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At least 829 records · Page 46Linked to original sources
USGS2022

Quantifying the effects of tides, river flow, and barriers on movements of Chinook Salmon smolts at junctions in the Sacramento–San Joaquin River Delta using multistate models

Successful migration of Chinook Salmon ( Oncorhynchus tshawytscha ) smolts seaward in the Sacramento – San Joaquin River Delta (hereafter, Delta) requires navigating a network of numerous branching channels. Within the Delta, several key junctions route smolts either towards more direct paths to the ocean or towards the interior Delta, an area associated with decreased survival. Movements within these junctions that determine route choice can be influenced by numerous behavioral and environmental factors, including the complex interplay between tidal and riverine hydraulics. Here, we apply continuous time multistate Markov models to examine the influence of tidal and riverine hydraulics, behavioral factors, and management actions on smolt movements. These models incorporate more information from acoustic telemetry data compared with previous approaches to modeling smolt movements in the Delta. By decomposing modeled flows into tidal and net flow signals we elucidate how each component influences movements into and out of distributary channels. Increasing net flows generally increased movement rates, while flood tides decreased seaward movement rates. Similarly, ebb tides increased downstream movements as fish go with the flow. We found less support for diel movement behaviors compared to flow metrics. Additionally, we quantify the effects of a large management action, the placement of a physical barrier, which was effective at decreasing entrainment into the interior Delta. Together, these results help inform management of Chinook Salmon and increase our understanding of the major factors driving smolt movements within these key junctions.

California↗
USGS1998

Nutrient loading and selected water-quality and biological characteristics of Dickinson Bayou near Houston, Texas, 1995-97

Data were collected at 10 stations in the Dickinson Bayou watershed near Houston, Texas, from March 1995 through February 1997 to estimate the concentrations, loads, and yields of selected nutrients that enter the bayou; to characterize the effects on nutrient concentrations of flow conditions, seasonality, and land use; and to identify nutrient sources (point or nonpoint) inferred from the occurrence and abundance of algal species in the benthic algal community. These data included rainfall samples, streamflow measurements, stream-water-quality samples, and biological samples, in addition to quality-assurance/quality-control samples. Estimates of loads of selected nutrients for the 106-square-mile watershed during the study were made for point sources and nonpoint sources. Point-source loading data are available only for ammonia nitrogen. Approximately 21.3 pounds per day of ammonia nitrogen is estimated from point sources during the study period. Nonpoint-source loads are estimated for eight nutrient forms: 7.84 pounds per day of dissolved ammonia nitrogen, 5.79 pounds per day of dissolved nitrite nitrogen, 215 pounds per day of dissolved Kjeldahl nitrogen, 350 pounds per day of total Kjeldahl nitrogen, 40.1 pounds per day of dissolved nitrite plus nitrate nitrogen, 67.6 pounds per day of total phosphorus, 46.6 pounds per day of dissolved phosphorus, and 42.8 pounds per day of dissolved orthophosphate. Rainfall-deposition rates also are estimated for comparison with point- and nonpoint-source loads. Deposition rates are 110 pounds per day of dissolved ammonia nitrogen, 120 pounds per day of dissolved nitrate nitrogen, and 15.8 pounds per day of dissolved phosphorus. Statistical tests were used to determine whether there are significant differences between nutrient concentrations during low-flow and during high-flow conditions. For basins with rural/mixed and urban land uses, nutrient concentrations generally are significantly different (greater) during storm events than during low flow, indicating accumulation in the watershed and subsequent washoff of nutrients. However, nutrient concentrations in storm-event samples consisting predominantly of runoff from a pasture are not significantly greater than those in low-flow samples. Statistical tests for seasonality indicate that dissolved ammonia nitrogen is significantly different in at least one season for all land uses (rural/residential, rural/mixed, and pasture) except urban. Concentrations tend to increase in the spring and early summer months, possibly from fertilizer application and subsequent washoff. Constituent-yield data were used to make direct comparisons of the nonpoint-source load contributions from four stations with watersheds of different land use. These comparisons lead to three conclusions: (1) For all nutrient species except orthophosphate, urban land use is the largest nonpoint-source contributor, (2) Kjeldahl nitrogen is the most abundant nutrient species, and (3) organic nitrogen accounts for the major part of the Kjeldahl nitrogen. Algal samples were collected at seven stations and were analyzed for periphyton identification and enumeration, and chlorophyll a and chlorophyll b concentrations. The large relative abundance of soil algae at stations in the middle of the watershed likely indicates the cumulative effects on water quality of agricultural nonpoint sources. Farther downstream near the State Highway 3 bridge, and downstream of three major tributary inflows, the increase in abundance of soil algae to a larger-than-expected level might reflect water-quality influences from predominantly urban nonpoint sources in the drainage basins of the three major tributary inflows. Nutrient concentrations do not appear to limit algal production in the upper (non-tidal) reach of Dickinson Bayou; but nutrient concentrations could have been limiting benthicalgal production in the lower (tidal) reach of the bayou during the time of the synoptic survey. If nitrogen is the limiting resource for algal productivity in the tidal reach of Dickinson Bayou, eutrophication of the system could be (at least partially) mitigated if nonpoint-source nutrient loads into the Bayou were reduced.

Texas↗
USGS2015

Wind River subbasin restoration: Annual report of U.S. Geological Survey activities January 2014 through December 2014

Executive Summary The Wind River subbasin in southwest Washington State provides habitat for a population of wild Lower Columbia River steelhead Oncorhynchus mykiss , which are listed as threatened under the Endangered Species Act. No hatchery steelhead have been planted in the Wind River subbasin since 1994, and hatchery adults are estimated to be less than one percent of adults in any year (Thomas Buehrens, Washington Department of Fish and Wildlife, personal communication). Numerous restoration actions have been implemented in the subbasin, including the removal of Hemlock Dam on Trout Creek in 2009. We used Passive Integrated Transponder (PIT) tagging and a series of instream PIT-tag interrogation systems (PTIS) to investigate life-histories, populations, and efficacy of habitat restoration actions for these steelhead. Data from our study, and companion work by Washington Department of Fish and Wildlife (WDFW), will contribute to Bonneville Power Administration’s (BPA) Research Monitoring and Evaluation (RM&E) Program Strategy of Fish Population Status Monitoring ( www.cbfish.org/ProgramStrategy.mvc/ViewProgramStrategySummary/1 ), specifically the sub-strategies of: 1) Assessing the Status and Trends of Diversity of Natural Origin Fish Populations and to Uncertainties Research regarding differing life histories of a wild steelhead population, 2) Assessing the Status and Trend of Adult Natural Origin Fish Populations, and 3) Monitoring and Evaluating the Effectiveness of Tributary Habitat Actions Relative to Environmental, Physical, or Biological Performance Objectives. During summer 2014, we PIT-tagged steelhead parr in headwater areas of the Wind River subbasin to investigate life-history diversity, specifically to compare fate of those juvenile steelhead that move downstream prior to smolting with those that remain in their natal areas until smolting. A series of instream PTISs monitored movement of these fish. We added a new multi-antenna PTIS on Trout Creek and made improvements to two of our smaller tributary PTISs during 2014. Detections at the instream PTISs showed trends of parr emigration during summer and fall, in addition to the expected movement of parr and smolts in spring. Long-term monitoring of PIT-tagged fish will provide information on contribution of various life-history strategies to smolt production and adult returns, as well as helping to identify factors influencing parr movement. Movements of PIT-tagged adult steelhead were tracked with our instream PTISs. These data will contribute to a better understanding of timing and distribution of spawning by this population of wild steelhead within the Wind River subbasin. Additionally, these data have provided information on timing of adult movements to various parts of the watershed, which is allowing us to assess adult use of tributary watersheds within the Wind River subbasin. These data are contributing to evaluating steelhead response to the removal of Hemlock Dam from Trout Creek. Hemlock Dam, which was located at rkm 2.0 of Trout Creek, was removed in summer 2009 and had contributed to hydrologic impairment of Trout Creek and potentially caused some deterrent to upstream adult steelhead migration. Evaluating restoration efforts is of interest to many managers and agencies so that funding and time are allocated for best results. The evaluation of various life-histories of Lower Columbia River steelhead within the Wind River subbasin provides information to better track populations, and more effectively direct habitat restoration and water allocation planning. Increasingly detailed Viable Salmonid Population information (Crawford and Rumsey 2009), such as that provided by PIT-tagging and instream PTISs networks like those we build and operate in the Wind River subbasin, provide data to better inform policy and management, as life-history strategies and production bottlenecks are identified and understood.

Washington↗
USGS2026

How wildlife respond to tropical cyclones: Short-term tactics and long-term impacts

From butterflies to lizards and from sharks to seabirds, wildlife exhibit tactics to survive the impacts of tropical cyclones, also known as hurricanes, cyclones, or typhoons depending on where they occur. Some species seek refuge during the storm by moving, some remain in place and ride it out, and others move longer distances, avoiding the main impacts of the storm altogether. Tropical cyclones can have direct impacts on wildlife (e.g. mortality) but can also have indirect effects by altering resources and habitat, with downstream impacts on abundance and recruitment. Using examples from across taxa and ecosystems, we explore the pathways by which tropical cyclones can influence wildlife populations and communities. We describe tactics demonstrated by wildlife that enable them to survive the immediate impacts of the storm, as well as the longer-term impacts after the storm. We give examples of tropical cyclones as a selective pressure and as a facilitator for the introduction of invasive species. We also describe how tropical cyclones may provide a net benefit to some native species. The ecological and evolutionary impacts of tropical cyclones on wildlife can be complex, as they are often intertwined with concurrent pressures from land-use change, human development, and climate change. As the frequency of intense tropical cyclones is predicted to increase globally, identifying the mechanisms by which wildlife cope with such disturbances can aid in understanding and mitigating the impacts of climate change on wildlife.

Biological Reviews↗
USGS2010

Invasion and production of New Zealand mud snails in the Colorado River, Glen Canyon

Species invasions are often associated with large-scale human alteration of ecosystems. One classic example is the increasing dominance of non-native taxa below and above dams on large rivers. These dams substantially alter the physical template of river ecosystems, and exotic taxa often proliferate with potentially large impacts on coexisting taxa and ecosystem processes. Here we document the invasion of New Zealand mud snails ( Potamopyrgus antipodarum ) in the Colorado River directly below Lake Powell in Glen Canyon, Arizona, USA. We also quantified the magnitude and variability in growth and secondary production of P. antipodarum during 2006–2007 to gain a functional measure of their role in the ecosystem. Snails were first detected in Glen Canyon in 1995, and have since become a dominant component of the invertebrate fauna. Throughout the invasion of P. antipodarum , biomass of other dominant taxa was variable and did not appear to be positively or negatively influenced by the presence of P. antipodarum . Specific growth rates of P. antipodarum were moderate (0.001–0.030 day −1 ) and strongly related to body size. Mean annual habitat-weighted biomass and production were relatively high (biomass: 4.4 g/m 2 ; secondary production: 13.3 g m −2 year −1 ) and similar among habitats. Mean monthly biomass and daily secondary production were much more variable, with highest values occurring in autumn. We show that invasion of a productive aquatic consumer to a highly disturbed river ecosystem had little detectable influence on the biomass of other invertebrate taxa. However, additional research will be necessary to fully understand and predict effects of P. antipodarum on coexisting taxa.

Arizona↗
USGS2021

Hydrographic and benthic mapping—St. Croix National Scenic Riverway—Osceola landing

High-resolution topographic and bathymetric mapping can assist in the analysis of river habitat. The National Park Service has been planning to relocate a boat ramp along the St. Croix River in Minnesota, across the river from the town of Osceola, Wisconsin, to improve visitor safety, improve operations for commercial use, enhance the overall visitor experience, and eliminate deferred maintenance at the landing. This landing grants access to the St. Croix River, which is a part of the National Park Service St. Croix National Scenic Riverway. Hydrographic and topographic surveys were needed to determine where the new location should be. The objective for these surveys was to provide baseline information in order to assess the direct effects of the landing relocation on physical habitat in areas adjacent to Osceola, Wisconsin. The study area for these surveys was about 18.5 hectares and located directly off the existing landing. Although the existing boat launch is referred to as the Osceola landing, it is located on the Minnesota side of the river and is the busiest National Park Service landing on the St. Croix River (National Park Service St. Croix National Scenic Riverway, 2020). This report documents methods and results of aquatic benthic mapping in a small area of the St. Croix River. The hydroacoustic and topographic surveys were collected from October 16–17, 2019. The hydrographic surveys consisted of multibeam and sidescan sound navigation and ranging (sonars). The topographic shoreline survey consisted of light detection and ranging (lidar) captured by boat adjacent to riverbanks. Additionally, an acoustic Doppler current profiler was used to measure flow velocities. The water level was higher than normal, and therefore had faster flow during the hydroacoustic surveys. Multibeam, lidar, and sidescan surveys occurred the first day, and the velocity mapping and ground truthing was conducted the second day. Multibeam and lidar provided derivative datasets that included bathymetry and a topobathy with a spatial resolution of 1 foot. From these data, additional data could be measured including slope and terrain ruggedness. Sidescan (acoustic reflectance measures) provided imagery that was used to help with interpretation of the river bottom. Outcomes from these combined datasets were substrate and bedform maps. Much of the area was covered in sand ripples or small dunes. A small area running adjacent to the deeper valley or cut down the river consisted of harder substrates, such as cobble and gravel. Large woody debris piles were found throughout the study area. Multiple stationary moving-bed tests were completed, and no corrections were recommended for the conditions occurring during survey. Mussel presence was noted in some of the underwater videos. The physical parameters of depth, flow, bedforms, and substrate derived from the datasets provided baseline measures for a benthic habitat map. Further analysis of benthic habitat might be possible with additional biological and chemical data.

Wisconsin↗
USGS2012

A general theory of multimetric indices and their properties

1. Stewardship of biological and ecological resources requires the ability to make integrative assessments of ecological integrity. One of the emerging methods for making such integrative assessments is multimetric indices (MMIs). These indices synthesize data, often from multiple levels of biological organization, with the goal of deriving a single index that reflects the overall effects of human disturbance. Despite the widespread use of MMIs, there is uncertainty about why this approach can be effective. An understanding of MMIs requires a quantitative theory that illustrates how the properties of candidate metrics relates to MMIs generated from those metrics. 2. We present the initial basis for such a theory by deriving the general mathematical characteristics of MMIs assembled from metrics. We then use the theory to derive quantitative answers to the following questions: Is there an optimal number of metrics to comprise an index? How does covariance among metrics affect the performance of the index derived from those metrics? And what are the criteria to decide whether a given metric will improve the performance of an index? 3. We find that the optimal number of metrics to be included in an index depends on the theoretical distribution of signal of the disturbance gradient contained in each metric. For example, if the rank-ordered parameters of a metric-disturbance regression can be described by a monotonically decreasing function, then an optimum number of metrics exists and can often be derived analytically. We derive the conditions by which adding a given metric can be expected to improve an index. 4. We find that the criterion defining such conditions depends nonlinearly of the signal of the disturbance gradient, the noise (error) of the metric and the correlation of the metric errors. Importantly, we find that correlation among metric errors increases the signal required for the metric to improve the index. 5. The theoretical framework presented in this study provides the basis for understanding the properties of MMIs. It can also be useful throughout the index construction process. Specifically, it can be used to aid understanding of the benefits and limitations of combining metrics into indices; it can inform selection/collection of candidate metrics; and it can be used directly as a decision aid in effective index construction.

Methods in Ecology and Evolution↗
USGS2010

Relation of urbanization to stream habitat and geomorphic characteristics in nine metropolitan areas of the United States

The relation of urbanization to stream habitat and geomorphic characteristics was examined collectively and individually for nine metropolitan areas of the United States?Portland, Oregon; Salt Lake City, Utah; Denver, Colorado; Dallas?Forth Worth, Texas; Milwaukee?Green Bay, Wisconsin; Birmingham, Alabama; Atlanta, Georgia; Raleigh, North Carolina; and Boston, Massachusetts. The study was part of a larger study conducted by the U.S. Geological Survey from 1999 to 2004 to examine the effects of urbanization on the physical, chemical, and biological components of stream ecosystems. The objectives of the current study were to determine how stream habitat and geomorphic characteristics relate to different aspects of urbanization across a variety of diverse environmental settings and spatial scales. A space-for-time rural-to-urban land-cover gradient approach was used. Reach-scale habitat data and geomorphic characteristic data were collected once during low flow and included indicators of potential habitat degradation such as measures of channel geometry and hydraulics, streambed substrate, low-flow reach volume (an estimate of base-flow conditions), habitat complexity, and riparian/bank conditions. Hydrologic metrics included in the analyses were those expected to be altered by increases in impervious surfaces, such as high-flow frequency and duration, flashiness, and low-flow duration. Other natural and human features, such as reach-scale channel engineering, geologic setting, and slope, were quantified to identify their possible confounding influences on habitat relations with watershed-scale urbanization indicators. Habitat and geomorphic characteristics were compared to several watershed-scale indicators of urbanization, natural landscape characteristics, and hydrologic metrics by use of correlation analyses and stepwise linear regression. Habitat and geomorphic characteristics were related to percentages of impervious surfaces only in some metropolitan areas and environmental settings. The relations between watershed-scale indicators of urbanization and stream habitat depended on physiography and climate, hydrology, pre-urban channel alterations, reach-scale slope and presence of bedrock, and amount of bank stabilization and grade control. Channels increased in size with increasing percentages of impervious surfaces in southeastern and midwestern metropolitan areas regardless of whether the pre-existing land use was forest or agriculture. The amount of enlargement depended on annual precipitation and frequency of high-flow events. The lack of a relation between channel enlargement and increasing impervious surfaces in other metropolitan areas was thought to be confounded by pre-urbanization hydrologic and channel alterations. Direct relations of channel shape and streambed substrate to urbanization were variable or lacking, probably because the type, amount, and source of sediment are dependent on the phase of urbanization. Reach-scale slope also was important for determining variations in streambed substrate and habitat complexity (percentage of riffles and runs). Urbanization-associated changes in reach-scale riparian vegetation varied geographically, partially depending on pre-existing riparian vegetation characteristics. Bank erosion increased in Milwaukee?Green Bay and Boston urban streams, and bank erosion also increased with an increase in a streamflow flashiness index. However, potential relations likely were confounded by the frequent use of channel stabilization and bank protection in urban settings. Low-flow reach volume did not decrease with increasing urbanization, but instead was related to natural landscape characteristics and possibly other unmeasured factors. The presence of intermittent bedrock in some sampled reaches likely limited some geomorphic responses to urbanization, such as channel bed erosion. Results from this study emphasize the importance of including a wide range of landscape variables at m

Scientific Investigations Report↗
USGS2011

Variation in spring migration routes and breeding distribution of northern pintails Anas acuta that winter in Japan

In North America, spring migration routes and breeding distribution of northern pintails Anas acuta vary because some individuals opportunistically nest at mid-latitudes in years when ephemeral prairie wetlands are available, whereas others regularly nest in arctic and sub-arctic regions where wetland abundance is more constant. Less was known about migration routes and breeding distribution of pintails in East Asia. From 2007–2009 we marked 198 pintails on their wintering areas in Japan with satellite transmitters to: 1) document spring migration routes and summer distribution, 2) evaluate migratory connections and breeding season sympatry with North American pintails, and 3) determine if pintails used the same migration routes in fall as in spring. Most pintails (67%) migrated to the Kamchatka or Chukotka peninsulas in eastern Russia either directly from Japan or via Sakhalin Island, Russia. Remaining pintails primarily migrated to the Magadan region or Kolyma River Basin in eastern Russia via Sakhalin Island. The Chukotka Peninsula was the most common summer destination, with highest densities in the Anadyr Lowlands; a region also used by pintails that migrate from North America. One pintail migrated to St. Lawrence Island, Alaska, in spring and another briefly migrated to the western coast of Alaska in fall. Autumn migration routes generally mirrored spring migration although most pintails bypassed Sakhalin Island in fall. Compared to North American pintails, pintails that winter in Japan exhibited less variation in migration routes and breeding distribution, and nested at higher latitudes. In the Russian Far East there is no region with habitats comparable in extent to the ephemeral mid-latitude wetlands of North America. Consequently, East Asian pintails mainly nest in arctic and sub-arctic regions where annual consistency in wetlands promotes constancy in migration routes and breeding distribution. Breeding season sympatry between pintails from different continents results more from North American pintails migrating to eastern Russia than from Japanese pintails migrating to North America.

Journal of Avian Biology↗
USGS2014

New insight into the spawning behavior of lake trout, Salvelinus namaycush , from a recovering population in the Laurentian Great Lakes

Spawning behavior of lake trout, Salvelinus namaycush , is poorly understood, relative to stream-dwelling salmonines. Underwater video records of spawning in a recovering population from the Drummond Island Refuge (Lake Huron) represent the first reported direct observations of lake trout spawning in the Laurentian Great Lakes. These observations provide new insight into lake trout spawning behavior and expand the current conceptual model. Lake trout spawning consisted of at least four distinct behaviors: hovering, traveling, sinking, and gamete release. Hovering is a new courtship behavior that has not been previously described. The apparent concentration of hovering near the margin of the spawning grounds suggests that courtship and mate selection might be isolated from the spawning act (i.e., traveling, sinking, and gamete release). Moreover, we interpret jockeying for position displayed by males during traveling as a unique form of male-male competition that likely evolved in concert with the switch from redd-building to itinerant spawning in lake trout. Unlike previous models, which suggested that intra-sexual competition and mate selection do not occur in lake trout, our model includes both and is therefore consistent with evolutionary theory, given that the sex ratio on spawning grounds is skewed heavily towards males. The model presented in this paper is intended as a working hypothesis, and further revision may become necessary as we gain a more complete understanding of lake trout spawning behavior.

Environmental Biology of Fishes↗
USGS2024

Infection–nutrition feedbacks: Fat supports pathogen clearance but pathogens reduce fat in a wild mammal

Though far less obvious than direct effects (clinical disease or mortality), the indirect influences of pathogens are difficult to estimate but may hold fitness consequences. Here, we disentangle the directional relationships between infection and energetic reserves, evaluating the hypotheses that energetic reserves influence infection status of the host and that infection elicits costs to energetic reserves. Using repeated measures of fat reserves and infection status in individual bighorn sheep ( Ovis canadensis ) in the Greater Yellowstone Ecosystem, we documented that fat influenced ability to clear pathogens ( Mycoplasma ovipneumoniae ) and infection with respiratory pathogens was costly to fat reserves. Costs of infection approached, and in some instances exceeded, costs of rearing offspring to independence in terms of reductions to fat reserves. Fat influenced probability of clearing pathogens, pregnancy and over-winter survival; from an energetic perspective, an animal could survive for up to 23 days on the amount of fat that was lost to high levels of infection. Cost of pathogens may amplify trade-offs between reproduction and survival. In the absence of an active outbreak, the influence of resident pathogens often is overlooked. Nevertheless, the energetic burden of pathogens likely has consequences for fitness and population dynamics, especially when food resources are insufficient.

Wyoming↗
USGS1995

The ecology of cormorants: some research needs and recommendations

Concerns about Double-crested Cormorants (Phalacrocorax auritus) have arisen because of their rapid population increase across North America and their economic impact on several aquaculture and commercial fish industries. In spite of the concern for cormorants, little published research is available that addresses either basic population biology questions or management issues. Based on a literature review, I recommend that research be conducted in four areas. First, a large-scale banding and marking program should be initiated so that population models can be used to estimate age- and sex-specific survival and fecundity (as has been done for the Shag [P. aristotelis] in Europe). By marking individual birds, survival and movement rates can be estimated between nesting colonies, which will provide information about potential source versus sink colonies. Second, studies of movements during migration and winter are required. Presently, no data are available on habitat use during migration or on the length-of-stay by individual birds. This has important implications to how cormorants interact with other fish and wildlife species over a broad range. Studies of movements during winter with radio-marked birds should indicate whether the 'problem birds' at aquaculture sites are merely a few specialists. Third, limiting factors, such as contaminants and disease, should receive further investigation, especially in light of recent concerns over the outbreak of Newcastle disease. The relationship between contaminant levels and developmental abnormalities in young cormorants in certain areas of the Great Lakes in Canada and the United States remains equivocal. Fourth, further studies are needed to document the economic impacts of cormorants on Channel Catfish (Ictalurus punctatus) and other cultured fishes and to determine ways to reduce predation by fish-eating birds. Mesocosm experiments should be conducted to evaluate how different fish extraction rates affect final productivity of fish. Controlled experiments with different exclusion and scaring devices are needed. With radio-marked birds, it should be determined what the behavioral responses are to the different scaring devises. Also, providing alternative wetland feeding sites in regions of fish farm depredation might alleviate some of the pressure on farmers. Studies with radio-marked birds could evaluate effects of manipulation of 'natural' wetlands on use by birds during the winter period. Finally, any research directed at the Double-crested Cormorant should also evaluate its interactions with other fisheating waterbirds.

Book chapter↗
USGS2021

Native mammals lack resilience to invasive generalist predator

Invasive predators have caused catastrophic declines in native wildlife across the globe. Though research has focused on the initial establishment, rapid growth, and spread of invasive predators, our understanding of prey resilience to established invasive predators remains limited. As a direct result of invasive Burmese pythons ( Python molurus bivittatus ), medium- to large-bodied native mammals decreased drastically across much of southern Florida as early as 2003. By 2014, most of these mammal species were exceedingly rare within the core invasion area, while pythons expanded outward to newly invaded areas. We used python observations to delineate the core python invasion area from the more recently invaded invasion front, and we compared changes in mammal occurrence from 2014 to 2019 between these two areas. We surveyed mammal communities using camera traps and scat surveys and used these observations to quantify the changes in occurrence among mammal species. As expected, occurrence of medium- and large-bodied mammals declined within the invasion front. However, contrary to our expectation, we observed little evidence of resilience among mammals within the invasion core. Of the 15 species detected in 2019, invasive black rats were the only species to increase in occurrence within the invasion core. Additionally, we observed declines in occurrence among native rodents within the invasion core, which were previously thought to be resistant to the effects of pythons. The continued presence of invasive pythons appears to be shifting the diverse mammal communities of southern Florida to one primarily composed of invasive species.

Florida↗
USGS2018

El Niño/Southern Oscillation-driven rainfall pulse amplifies predation by owls on seabirds via apparent competition with mice

Most approaches for assessing species vulnerability to climate change have focused on direct impacts via abiotic changes rather than indirect impacts mediated by changes in species interactions. Changes in rainfall regimes may influence species interactions from the bottom-up by increasing primary productivity in arid environments, but subsequently lead to less predictable top-down effects. Our study demonstrates how the effects of an EL Niño/Southern Oscillation (ENSO)-driven rainfall pulse ricochets along a chain of interactions between marine and terrestrial food webs, leading to enhanced predation of a vulnerable marine predator on its island breeding grounds. On Santa Barbara Island, barn owls ( Tyto alba ) are the main predator of a nocturnal seabird, the Scripps's murrelet ( Synthliboramphus scrippsi ), as well as an endemic deer mouse. We followed the links between rainfall, normalized difference vegetation index and subsequent peaks in mouse and owl abundance. After the mouse population declined steeply, there was approximately 15-fold increase in the number of murrelets killed by owls. We also simulated these dynamics with a mathematical model and demonstrate that bottom-up resource pulses can lead to subsequent declines in alternative prey. Our study highlights the need for understanding how species interactions will change with shifting rainfall patterns through the effects of ENSO under global change.

California↗
USGS2014

Spectroscopy from Space

This chapter reviews detection of materials on solid and liquid (lakes and ocean) surfaces in the solar system using ultraviolet to infrared spectroscopy from space, or near space (high altitude aircraft on the Earth), or in the case of remote objects, earth-based and earth-orbiting telescopes. Point spectrometers and imaging spectrometers have been probing the surfaces of our solar system for decades. Spacecraft carrying imaging spectrometers are currently in orbit around Mercury, Venus, Earth, Mars, and Saturn, and systems have recently visited Jupiter, comets, asteroids, and one spectrometer-carrying spacecraft is on its way to Pluto. Together these systems are providing a wealth of data that will enable a better understanding of the composition of condensed matter bodies in the solar system. Minerals, ices, liquids, and other materials have been detected and mapped on the Earth and all planets and/or their satellites where the surface can be observed from space, with the exception of Venus whose thick atmosphere limits surface observation. Basaltic minerals (e.g., pyroxene and olivine) have been detected with spectroscopy on the Earth, Moon, Mars and some asteroids. The greatest mineralogic diversity seen from space is observed on the Earth and Mars. The Earth, with oceans, active tectonic and hydrologic cycles, and biological processes, displays the greatest material diversity including the detection of amorphous and crystalline inorganic materials, organic compounds, water and water ice. Water ice is a very common mineral throughout the Solar System and has been unambiguously detected or inferred in every planet and/or their moon(s) where good spectroscopic data has been obtained. In addition to water ice, other molecular solids have been observed in the solar system using spectroscopic methods. Solid carbon dioxide is found on all systems beyond the Earth except Pluto, although CO 2 sometimes appears to be trapped in other solids rather than as an ice on some objects. The largest deposits of carbon dioxide ice are found on Mars. Sulfur dioxide ice is found in the Jupiter system. Nitrogen and methane ices are common beyond the Uranian system. Saturn’s moon Titan probably has the most complex active extra-terrestrial surface chemistry involving organic compounds. Some of the observed or inferred compounds include ices of benzene (C 6 H 6 ), cyanoacetylene (HC 3 N), toluene (C 7 H 8 ), cyanogen (C 2 N 2 ), acetonitrile (CH 3 CN), water (H 2 O), carbon dioxide (CO 2 ), and ammonia (NH 3 ). Confirming compounds on Titan is hampered by its thick smoggy atmosphere, where in relative terms the atmospheric interferences that hamper surface characterization lie between that of Venus and Earth. In this chapter we exclude discussion of the planets Jupiter, Saturn, Uranus, and Neptune because their thick atmospheres preclude observing the surface, even if surfaces exist. However, we do discuss spectroscopic observations on a number of the extra-terrestrial satellite bodies. Ammonia was predicted on many icy moons but is notably absent among the definitively detected ices with possible exceptions on Charon and possible trace amounts on some of the Saturnian satellites. Comets, storehouses of many compounds that could exist as ices in their nuclei, have only had small amounts of water ice definitively detected on their surfaces from spectroscopy. Only two asteroids have had a direct detection of surface water ice, although its presence can be inferred in others.

Reviews in Mineralogy and Geochemistry↗
USGS2025

Characterization of the long-distance dispersal kernel of white-tailed deer and evaluating its impact on chronic wasting disease spread in Wisconsin

Chronic wasting disease (CWD) is a fatal neurodegenerative disease infecting cervids. It is highly contagious and caused by misfolded prions that propagate via templated conformational conversion of the cervid’s normal prion protein. Prevalence of CWD in free-ranging deer in North America is mostly low, but in some regions local prevalence has reached 80%. CWD prions can be transmitted via direct contact with infected individuals or indirectly through the environment. Infected individuals shed prions through feces, urine, saliva or carcasses, and prions have long environmental persistence. Long-distance dispersal of infected deer poses a significant risk for CWD spread. We propose an integrodifference equation (IDE) model to capture CWD dynamics and the consequences of long-distance dispersal behavior in white-tailed deer (WTD, Odocoileus virginianus ). A diffusion-settling model characterizes long-distance dispersal kernels, accommodating hypothetical dispersal behaviors through time-dependent settling rate functions. Three new closed-form dispersal kernels are approximated using Laplace’s method and parameterized with GPS location data collected from WTD in Wisconsin, USA. Settling rates reflecting ongoing sensitivity to stimuli which prompt deer to disperse from their natal home range give the most supported long-distance dispersal kernel. Impact of long-distance dispersal on CWD spread is quantified using the IDE model. At high population densities, long-distance dispersal can magnify CWD spread by a factor of four. At lower population densities single infected individuals cannot initiate an outbreak, but CWD may still spread due to the accumulation of environmental hazard from prions behind the wave of invasion, possibly presenting substantial management challenges.

Wisconsin↗
USGS2022

Global genetic diversity status and trends: Towards a suite of Essential Biodiversity Variables (EBVs) for genetic composition

Biodiversity underlies ecosystem resilience, ecosystem function, sustainable economies, and human well-being. Understanding how biodiversity sustains ecosystems under anthropogenic stressors and global environmental change will require new ways of deriving and applying biodiversity data. A major challenge is that biodiversity data and knowledge are scattered, biased, collected with numerous methods, and stored in inconsistent ways. The Group on Earth Observations Biodiversity Observation Network (GEO BON) has developed the Essential Biodiversity Variables (EBVs) as fundamental metrics to help aggregate, harmonize, and interpret biodiversity observation data from diverse sources. Mapping and analyzing EBVs can help to evaluate how aspects of biodiversity are distributed geographically and how they change over time. EBVs are also intended to serve as inputs and validation to forecast the status and trends of biodiversity, and to support policy and decision making. Here, we assess the feasibility of implementing Genetic Composition EBVs (Genetic EBVs), which are metrics of within-species genetic variation. We review and bring together numerous areas of the field of genetics and evaluate how each contributes to global and regional genetic biodiversity monitoring with respect to theory, sampling logistics, metadata, archiving, data aggregation, modeling, and technological advances. We propose four Genetic EBVs: ( i ) Genetic Diversity; ( ii ) Genetic Differentiation; ( iii ) Inbreeding; and ( iv ) Effective Population Size ( N e ). We rank Genetic EBVs according to their relevance, sensitivity to change, generalizability, scalability, feasibility and data availability. We outline the workflow for generating genetic data underlying the Genetic EBVs, and review advances and needs in archiving genetic composition data and metadata. We discuss how Genetic EBVs can be operationalized by visualizing EBVs in space and time across species and by forecasting Genetic EBVs beyond current observations using various modeling approaches. Our review then explores challenges of aggregation, standardization, and costs of operationalizing the Genetic EBVs, as well as future directions and opportunities to maximize their uptake globally in research and policy. The collection, annotation, and availability of genetic data has made major advances in the past decade, each of which contributes to the practical and standardized framework for large-scale genetic observation reporting. Rapid advances in DNA sequencing technology present new opportunities, but also challenges for operationalizing Genetic EBVs for biodiversity monitoring regionally and globally. With these advances, genetic composition monitoring is starting to be integrated into global conservation policy, which can help support the foundation of all biodiversity and species' long-term persistence in the face of environmental change. We conclude with a summary of concrete steps for researchers and policy makers for advancing operationalization of Genetic EBVs. The technical and analytical foundations of Genetic EBVs are well developed, and conservation practitioners should anticipate their increasing application as efforts emerge to scale up genetic biodiversity monitoring regionally and globally.

Biological Reviews↗
USGS2006

Fish-assemblage variation between geologically defined regions and across a longitudinal gradient in the Monkey River Basin, Belize

Linkages between geology and fish assemblages have been inferred in many regions throughout the world, but no studies have yet investigated whether fish assemblages differ across geologies in Mesoamerica. The goals of our study were to: 1) compare physicochemical conditions and fish-assemblage structure across 2 geologic types in headwaters of the Monkey River Basin, Belize, and 2) describe basin-scale patterns in fish community composition and structure for the benefit of conservation efforts. We censused headwater-pool fishes by direct observation, and assessed habitat size, structure, and water chemistry to compare habitat and fish richness, diversity, evenness, and density between streams in the variably metamorphosed sedimentary geologic type typical of 80% of Belize’s Maya Mountains (the Santa Rosa Group), and an anomalous extrusive geologic formation in the same area (the Bladen Volcanic Member). We also collected species-presence data from 20 sites throughout the basin for analyses of compositional patterns from the headwaters to the top of the estuary. Thirty-nine fish species in 21 families were observed. Poeciliids were numerically dominant, making up 39% of individuals captured, followed by characins (25%), and cichlids (20%). Cichlidae was the most species-rich family (7 spp.), followed by Poeciliidae (6 spp.). Habitat size and water chemistry differed strongly between geologic types, but habitat diversity did not. Major fish-assemblage differences also were not obvious between geologies, despite a marked difference in the presence of the aquatic macrophyte, Marathrum oxycarpum (Podostemaceae), which covered 37% of the stream bottom in high-nutrient streams draining the Santa Rosa Group, and did not occur in the low-P streams draining the Bladen Volcanic Member. Correlation analyses suggested that distance from the sea and amount of cover within pools are important to fish-assemblage structure, but that differing abiotic factors may influence assemblage structure within each geologic type. The fauna showed weak compositional zonation into 3 groups (headwaters, coastal plain, and nearshore). Nearly 20% of the fish species collected have migratory life cycles (including Joturus pichardi , Agonostomus monticola , and Gobiomorus dormitor ) that use freshwater and marine habitats. Some of these species probably rely on a natural flow regime and longitudinal connectivity for reproduction and dispersal of young, and natural flow regime and longitudinal connectivity are important factors for maintenance of functional linkages between the uplands and the coast in the ridge-to-reef corridor where the Monkey River is located. Therefore, we suggest that the viability of migratory fish populations may be a good biological indicator of upland-to-estuary connectivity important both to fishes and coastal ecosystem function. We recommend follow-up studies to substantiate the relative strengths of relationships between community structure and abiotic factors in contrasting geologies and to examine potential bottom−up responses of stream biota to the higher nutrient levels that were observed in stream waters draining the Santa Rosa Group geologic type.

Journal of the North American Benthological Societ↗