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At least 811 records · Page 45Linked to original sources
USGS2017

Taxonomic revision of the South American catfish genus Ageneiosus (Siluriformes: Auchenipteridae) with the description of four new species

The catfish genus Ageneiosus in the exclusively Neotropical family Auchenipteridae is revised. Species of Ageneiosus are widely distributed in all major South American continental drainages except the São Francisco River basin and small rivers along the Brazilian east coast. The taxonomic revision was based on examination of available type specimens, additional museum material and comparisons of original descriptions. A suite of morphometric, meristic and qualitative characters of internal and external anatomy were used to diagnose valid species and determine synonyms. Thirteen valid species are recognized in the genus Ageneiosus , some of which are widely distributed across South America. Ageneiosus pardalis is the only trans-Andean species in the genus. Ageneiosus polystictus and Ageneiosus uranophthalmus are more widely distributed than previously reported. Ageneiosus marmoratus is a junior synonym of Ageneiosus inermis . Ageneiosus dentatus is a valid species and its name is removed from the synonymy of Ageneiosus ucayalensis . Four new species are described: Ageneiosus akamai , Ageneiosus apiaka , Ageneiosus intrusus and Ageneiosus lineatus , all from the Amazon River basin. A dichotomous key for all 13 valid species of Ageneiosus species is provided.

Journal of Fish Biology↗
USGS2021

Identification of Aphanomyces invadans, the cause of epizootic ulcerative syndrome, in smallmouth bass (Micropterus dolomieu) from the Cheat River, West Virginia, USA

The oomycete Aphanomyces invadans (Saprolegniales, Oomycetes), the cause of epizootic ulcerative syndrome (EUS), is an OIE (World Organization for Animal Health) reportable pathogen, capable of infecting many fish species worldwide in both freshwater and estuarine environments (Iberahim et al. 2018). Since the discovery of EUS in Japan in 1971 (Egusa and Masuda 1971), it has spread globally and caused substantial fish mortalities and economic losses (Lilley et al. 1998). Cases in the United States have included lesions initially named ulcerative mycosis of Atlantic menhaden Brevoortia tyrannus (Noga et al. 1988) along the Atlantic coast and later confirmed as A. invadans in menhaden from the Chesapeake Bay (Blazer et al. 1999). It has also been reported in several freshwater and estuarine fishes from Florida, including largemouth bass Micropterus salmoides (Sosa et al. 2007) and channel catfish, black bullhead, and bluegill from recreational ponds in Louisiana (Hawke et al. 2003).This communication reports the finding of A. invadans in smallmouth bass Micropterus dolomieu from the Cheat River, West Virginia. During fish health assessments in October 2020, smallmouth bass with grossly observable skin lesions were determined to be infected with A. invadans . We believe this is the first report of A. invadans infection in smallmouth bass and it was not observed during previous health assessments in this region.

West Virginia↗
USGS2013

Woody vegetation communities of tidal freshwater swamps in South Carolina, Georgia and Florida (US) with comparisons to similar systems in the US and South America

Questions What are the general tree communities found in tidal freshwater swamps along four large coastal rivers in the southeastern United States (US)? How do these communities compare to other tidal freshwater swamps in the US and South America? Locations Tidal floodplains of major rivers along the Atlantic and Gulf coasts of the southeastern US: Savannah, Altamaha, Suwannee and Apalachicola Rivers. Methods An extensive survey of trees and shrubs was conducted to describe the communities from a range of tidal freshwater swamps. River basins studied include micro-tidal (Gulf coast) and meso-tidal (Atlantic coast) regimes, and study areas were located both near and distant to primary channels. A total of 128 plots (100 m2 each) were inventoried, distributed evenly over the Savannah and Altamaha Rivers along the Atlantic coast, and the Suwannee and Apalachicola Rivers along the Gulf coast. Multivariate statistics helped discern communities and the significant indicator species in each. Results Four general communities were characterized and named according to the strongest individual indicator species in each: Water Tupelo (Nyssa aquatica) Community, Swamp Tupelo (Nyssa biflora) Community, Dwarf Palmetto (Sabal minor) Community and Cabbage Palm (Sabal palmetto) Community. Conclusions Descriptions of most tidal freshwater swamps in the southeastern US fit within the communities described in this study. Because studies that make inferences between environmental drivers (e.g. salinity, hydroperiod, hurricanes) and specific community types are best applied to the same communities (but perhaps different river systems), this work provides a framework by which tidal freshwater forested wetlands can be accurately compared based on their tree communities. We suggest that, within the broad range of our inventories, the four communities described identify the primary associations that should be tracked within most tidal freshwater swamps of the US. However, we identify some river basins in the US that do not fit this construct. Diversity of major tree communities in tidal freshwater swamps outside the US is generally much lower (with the notable exception of Amazonian hardwood tidal várzea), as are basal area values.

Georgia;Florida;South Carolina↗
USGS2017

Biocrust ecology: Unifying micro- and macro-scales to confront global change

Biological soil crusts (biocrusts) are communities of microbes, lichens and bryophytes living at the soil surface in drylands (Fig. 1; Belnap et al ., 2016). Biocrusts occur on all continents and can comprise a majority of cover in some systems (Belnap et al ., 2016). While species diversity and distributions have long been a research focus, interest in controls on community composition and cover has expanded as biocrusts are increasingly recognized for their roles in ecosystem functioning (Deane-Coe and Stanton, 2017). For example, biocrust organisms can stabilize soils (Belnap et al ., 2016; Faist et al ., 2017), fix atmospheric carbon (C) (Sancho et al ., 2016), and serve as the foremost source of ‘new’ soil nitrogen (N) in drylands, via N 2 fixation (Barger et al ., 2016) These contributions to gross primary production and soil fertility could be quite large, as high-end estimates suggest biocrusts and similar communities of bryophytes and lichens might account for 10% of terrestrial C- and 50% of N-fixation globally (Elbert et al ., 2012). Yet verifying these and other biocrust roles in ecosystem functioning is complicated by limited knowledge of biocrust cover and composition across the vast dryland biome (Ferrenberg et al ., 2017). It was against this backdrop that ‘Biocrust3: the 3 rd International workshop on biological soil crusts’ was held in Moab, UT, USA, on 26-30 September 2016. The workshop brought together over 50 scientists from 21 countries and six continents, and included numerous biocrust science pioneers (Fig. 2). The meeting was notable for its cross-scale focus, discussion of novel molecular and imaging techniques, and sessions on mapping and restoring biocrusts in a changing world. Here, we synthesize a central theme that emerged from Biocrust3, namely the potential for combining cutting edge tools with studies focused on organismal traits, ecosystem functions, and global change biology to advance the frontier of biocrust ecology.

New Phytologist↗
USGS2018

Ancient Martian aeolian processes and palaeomorphology reconstructed from the Stimson formation on the lower slope of Aeolis Mons, Gale crater, Mars

Reconstruction of the palaeoenvironmental context of Martian sedimentary rocks is central to studies of ancient Martian habitability and regional palaeoclimate history. This paper reports the analysis of a distinct aeolian deposit preserved in Gale crater, Mars, and evaluates its palaeomorphology, the processes responsible for its deposition, and its implications for Gale crater geological history and regional palaeoclimate. Whilst exploring the sedimentary succession cropping out on the northern flank of Aeolis Mons, Gale crater, the Mars Science Laboratory rover Curiosity encountered a decametre‐thick sandstone succession, named the Stimson formation, unconformably overlying lacustrine deposits of the Murray formation. The sandstone contains sand grains characterized by high roundness and sphericity, and cross‐bedding on the order of 1 m in thickness, separated by sub‐horizontal bounding surfaces traceable for tens of metres across outcrops. The cross‐beds are composed of uniform thickness cross‐laminations interpreted as wind‐ripple strata. Cross‐sets are separated by sub‐horizontal bounding surfaces traceable for tens of metres across outcrops that are interpreted as dune migration surfaces. Grain characteristics and presence of wind‐ripple strata indicate deposition of the Stimson formation by aeolian processes. The absence of features characteristic of damp or wet aeolian sediment accumulation indicate deposition in a dry aeolian system. Reconstruction of the palaeogeomorphology suggests that the Stimson dune field was composed largely of simple sinuous crescentic dunes with a height of ca 10 m, and wavelengths of ca 150 m, with local development of complex dunes. Analysis of cross‐strata dip‐azimuths indicates that the general dune migration direction and hence net sediment transport was towards the north‐east. The juxtaposition of a dry aeolian system unconformably above the lacustrine Murray formation represents starkly contrasting palaeoenvironmental and palaeoclimatic conditions. Stratigraphic relationships indicate that this transition records a significant break in time, with the Stimson formation being deposited after the Murray formation and stratigraphically higher Mount Sharp group rocks had been buried, lithified and subsequently eroded.

Sedimentology↗
USGS2019

Evidence for plunging river plume deposits in the Pahrump Hills member of the Murray formation, Gale crater, Mars

Recent robotic missions to Mars have offered new insights into the extent, diversity and habitability of the Martian sedimentary rock record. Since the Curiosity rover landed in Gale crater in August 2012, the Mars Science Laboratory Science Team has explored the origins and habitability of ancient fluvial, deltaic, lacustrine and aeolian deposits preserved within the crater. This study describes the sedimentology of a ca 13 m thick succession named the Pahrump Hills member of the Murray formation, the first thick fine‐grained deposit discovered in situ on Mars. This work evaluates the depositional processes responsible for its formation and reconstructs its palaeoenvironmental setting. The Pahrump Hills succession can be sub‐divided into four distinct sedimentary facies: (i) thinly laminated mudstone; (ii) low‐angle cross‐stratified mudstone; (iii) cross‐stratified sandstone; and (iv) thickly laminated mudstone–sandstone. The very fine grain size of the mudstone facies and abundant millimetre‐scale and sub‐millimetre‐scale laminations exhibiting quasi‐uniform thickness throughout the Pahrump Hills succession are most consistent with lacustrine deposition. Low‐angle geometric discordances in the mudstone facies are interpreted as ‘scour and drape’ structures and suggest the action of currents, such as those associated with hyperpycnal river‐generated plumes plunging into a lake. Observation of an overall upward coarsening in grain size and thickening of laminae throughout the Pahrump Hills succession is consistent with deposition from basinward progradation of a fluvial‐deltaic system derived from the northern crater rim into the Gale crater lake. Palaeohydraulic modelling constrains the salinity of the ancient lake in Gale crater: assuming river sediment concentrations typical of floods on Earth, plunging river plumes and sedimentary structures like those observed at Pahrump Hills would have required lake densities near freshwater to form. The depositional model for the Pahrump Hills member presented here implies the presence of an ancient sustained, habitable freshwater lake in Gale crater for at least ca 10 3 to 10 7 Earth years.

Sedimentology↗
USGS2020

GeoNat v1.0: A dataset for natural feature mapping with artificial intelligence and supervised learning

Machine learning allows “the machine” to deduce the complex and sometimes unrecognized rules governing spatial systems, particularly topographic mapping, by exposing it to the end product. Often, the obstacle to this approach is the acquisition of many good and labeled training examples of the desired result. Such is the case with most types of natural features. To address such limitations, this research introduces GeoNat v1.0, a natural feature dataset, used to support artificial intelligence‐based mapping and automated detection of natural features under a supervised learning paradigm. The dataset was created by randomly selecting points from the U.S. Geological Survey’s Geographic Names Information System and includes approximately 200 examples each of 10 classes of natural features. Resulting data were tested in an object‐detection problem using a region‐based convolutional neural network. The object‐detection tests resulted in a 62% mean average precision as baseline results. Major challenges in developing training data in the geospatial domain, such as scale and geographical representativeness, are addressed in this article. We hope that the resulting dataset will be useful for a variety of applications and shed light on training data collection and labeling in the geospatial artificial intelligence domain.

Transactions in GIS↗
USGS2021

Comparing geometric differences between Landsat Collection 1 to Collection 2 level-1 products

In late 2020 the U.S. Geological Survey (USGS) began the distribution of Landsat products associated with their collection 2 reprocessing of the archive. Several changes were implemented within the Landsat Product Generation System (LPGS) and the calibration parameters applied to the Landsat imagery for the collection 2 processing. When comparing between collection 1 and collection 2 products, radiometric and geometric differences will be present. One of the most substantial changes between the two collections was an adjustment to the ground control which made the control more accurate from an absolute and relative perspective. Some of the other changes associated with collection 2 processing were to the Digital Elevation Model (DEM) used in terrain correction, the Thermal Infrared Sensor (TIRS) relative gains, TIRS absolute calibration, Operational Land Imagery (OLI) absolute gain model, OLI relative gain, and OLI bias calculation to name a few. Although these changes also have an effect on the differences between the product associated with these two collections, the change in the ground control, although typically less than one 30-meter multispectral pixel in magnitude, will have the largest effect on the differences between the products. This change in ground control is also a spatially dynamic change that although is low in spatial frequency, is nonlinear and is not a change that can be modeled on a global or even on a local Worldwide Reference System-2 (WRS-2) path and row scale. The effects of these ground control changes will be discussed and demonstrated within this paper along with examples showing their effect on specific datasets. This paper demonstrates some of these geometric differences associated with the ground control through both the registration statistics created during product generation and through an example comparison of a set of collection 1 and collection 2 products.

Conference Paper↗
USGS2003

The ecology of arsenic

Arsenic is a metalloid whose name conjures up images of murder. Nonetheless, certain prokaryotes use arsenic oxyanions for energy generation, either by oxidizing arsenite or by respiring arsenate. These microbes are phylogenetically diverse and occur in a wide range of habitats. Arsenic cycling may take place in the absence of oxygen and can contribute to organic matter oxidation. In aquifers, these microbial reactions may mobilize arsenic from the solid to the aqueous phase, resulting in contaminated drinking water. Here we review what is known about arsenic-metabolizing bacteria and their potential impact on speciation and mobilization of arsenic in nature.

Science↗
USGS1960

Emphasis on holotype (?)

The description of new species should not be confined to physical description of a holotype. One specimen cannot include all characters or be typical of any taxon. The holotype serves only a nomenclatural function and might also be termed the name-bearer (nomenifer) to avoid confusion of "type specimen" with "typical specimen.".

Science↗
USGS1966

Geomagnetic polarity epochs: A new polarity event and the age of the Brunhes-Matuyama boundary

Recent paleomagnetic-radiometric data from six rhyolite domes in the Valles Caldera, New Mexico, indicate that the last change in polarity of the earth's magnetic field from reversed to normal (the Brunhes-Matuyama boundary) occurred at about 0.7 million years ago. A previously undiscovered geomagnetic polarity event, herein named the "Jaramillo normal event," occurred about 0.9 million years ago.

New Mexico↗
USGS1974

Molluscan phylogeny: The paleontological viewpoint

Stasek theorized that the extant mollusks are the progeny of three separate lineages that separated before the phylum was well established. He wrote that no known intermediate forms, fossil or living, bridge the "enormous gaps between any two of the three lineages," and therefore treated each as a separate subphylum. These subphyla are (i) the subphylum Aculifera Hatscheck 1891, containing only the class Aplacophora, derived from the most primitive ancestors of the Mollusca; (ii) the subphylum Placophora von Jhering 1876, containing only the class Polyplacophora, and emphasizing the pseudometamerism of its more advanced premollusk ancestor; and (iii) the subphylum Conchifera Gegenbaur 1878, containing the Monoplacophora and the other classes derived from it. We point out that the Polyplacophora may be derived from the Monoplacophora instead of a more primitive ancestral stock. We also suggest that the Conchifera can be separated into two major lineages, each worthy of the rank of subphylum. The fossil record indicates that the Monoplacophora gave rise to the Gastropoda, Cephalopoda, Rostroconchia, and possibly Polyplacophora, and that the Pelecypoda and Scaphopoda are derived from the Rostroconchia. These last three classes thus form a lineage that diverged from the Monoplacophora in the Early Cambrian. They emphasized a shell form that in all groups is primitively open at both ends, allowing the gut to remain relatively straight, with an anterior mouth and posterior anus. They became burrowing (infaunal) deposit or filter feeders. We coin the term Diasoma (through-body) for the subphylum containing these three classes (Rostroconchia, Pelecypoda, and Scaphopoda). The remaining three classes (Monoplacophora, Gastropoda, and Cephalopoda) emphasize a conical univalved shell, usually twisted into a spiral. The relatively small single aperture forces the anus to lie close to the mouth, and the gut is bent into a "U." Most are surface-dwelling (epifaunal) grazers or carnivores. We coin the name Cyrtosoma (hunchback-body) for the subphylum containing these three classes. Strictly speaking, the cyrtosomes are the ancestors of the diasomes but, in fact, both subphyla appeared and began to diversify within a few million years in the Early Cambrian.

Science↗
USGS1980

Seabed minerals and the law of the sea

If, as seems likely, a comprehensive law-of-the-sea treaty is successfully concluded, minerals of the continental margins would be almost entirely controlled by coastal nations, and the right to produce minerals of the deep ocean floor would be licensed by an International Seabed Authority. Mineral production from the continental margins is likely to increase and diversify with time. The only minerals from the deep ocean floor for which there are reasonably good prospects of production within the next decade are the metalliferous muds from some of the deeps in the Red Sea (which lie within what is likely to be the jurisdiction of Saudi Arabia and Sudan) and nodules in the northeastern equatorial Pacific that contain recoverable metals, namely nickel, copper, cobalt, and possibly manganese, molybdenum, and vanadium.

Science↗
USGS1984

Deposit from a giant wave on the island of Lanai, Hawaii

Limestone-bearing gravel, the newly named Hulopoe Gravel, blankets the coastal slopes on Lanai. The deposit, which reaches a maximum altitude of 326 meters, formerly was believed to have been deposited along several different ancient marine strandlines, but dated submerged coral reefs and tide-gauge measurements indicate that the southeastern Hawaiian Islands sink so fast that former worldwide high stands of the sea now lie beneath local sea level. Evidence indicates that the Hulopoe Gravel and similar deposits on nearby islands were deposited during the Pleistocene by a giant wave generated by a submarine landslide on a sea scarp south of Lanai.

Hawaii↗
USGS1989

Voyager 2 at Neptune: Imaging science results

Voyager 2 images of Neptune reveal a windy planet characterized by bright clouds of methane ice suspended in an exceptionally clear atmosphere above a lower deck of hydrogen sulfide or ammonia ices. Neptune's atmosphere is dominated by a large anticyclonic storm system that has been named the Great Dark Spot (GDS). About the same size as Earth in extent, the GDS bears both many similarities and some differences to the Great Red Spot of Jupiter. Neptune's zonal wind profile is remarkably similar to that of Uranus. Neptune has three major rings at radii of 42,000, 53,000, and 63,000 kilometers. The outer ring contains three higher density arc-like segments that were apparently responsible for most of the ground-based occultation events observed during the current decade. Like the rings of Uranus, the Neptune rings are composed of very dark material; unlike that of Uranus, the Neptune system is very dusty. Six new regular satellites were found, with dark surfaces and radii ranging from 200 to 25 kilometers. All lie inside the orbit of Triton and the inner four are located within the ring system. Triton is seen to be a differentiated body, with a radius of 1350 kilometers and a density of 2.1 grams per cubic centimeter; it exhibits clear evidence of early episodes of surface melting. A now rigid crust of what is probably water ice is overlain with a brilliant coating of nitrogen frost, slightly darkened and reddened with organic polymer material. Streaks of organic polymer suggest seasonal winds strong enough to move particles of micrometer size or larger, once they become airborne. At least two active plumes were seen, carrying dark material 8 kilometers above the surface before being transported downstream by high level winds. The plumes may be driven by solar heating and the subsequent violent vaporization of subsurface nitrogen.

Science↗
USGS2009

Ecophysiology of "halarsenatibacter silvermanii" strain SLAS-1 T , gen. nov., sp. nov., a facultative chemoautotrophic arsenate respirer from salt-saturated Searles Lake, California

Searles Lake occupies a closed basin harboring salt-saturated, alkaline brines that have exceptionally high concentrations of arsenic oxyanions. Strain SLAS-1 T was previously isolated from Searles Lake (R. S. Oremland, T. R. Kulp, J. Switzer Blum, S. E. Hoeft, S. Baesman, L. G. Miller, and J. F. Stolz, Science 308:1305-1308, 2005). We now describe this extremophile with regard to its substrate affinities, its unusual mode of motility, sequenced arrABD gene cluster, cell envelope lipids, and its phylogenetic alignment within the order Halanaero-bacteriales, assigning it the name "Halarsenatibacter silvermanii" strain SLAS-1 T . We also report on the substrate dynamics of an anaerobic enrichment culture obtained from Searles Lake that grows under conditions of salt saturation and whose members include a novel sulfate reducer of the order Desulfovibriales, the archaeon Halorhabdus utahensis, as well as a close homolog of strain SLAS-1 T . Copyright ?? 2009, American Society for Microbiology. All Rights Reserved.

Applied and Environmental Microbiology↗
USGS2004

Vulnerability of drinking-water wells in La Crosse, Wisconsin, to enteric-virus contamination from surface water contributions

Human enteric viruses can contaminate municipal drinking-water wells, but few studies have examined the routes by which viruses enter these wells. In the present study, the objective was to monitor the municipal wells of La Crosse, Wisconsin, for enteric viruses and determine whether the amount of Mississippi River water infiltrating the wells was related to the frequency of virus detection. From March 2001 to February 2002, one river water site and four wells predicted by hydrogeological modeling to have variable degrees of surface water contributions were sampled monthly for enteric viruses, microbial indicators of sanitary quality, and oxygen and hydrogen isotopes. 18O/ 16O and 2H/1H ratios were used to determine the level of surface water contributions. All samples were collected prior to chlorination at the wellhead. By reverse transcription-PCR (RT-PCR), 24 of 48 municipal well water samples (50%) were positive for enteric viruses, including enteroviruses, rotavirus, hepatitis A virus (HAV), and noroviruses. Of 12 river water samples, 10 (83%) were virus positive by RT-PCR. Viable enteroviruses were not detected by cell culture in the well samples, although three well samples were positive for culturable HAV. Enteroviruses detected in the wells by RT-PCR were identified as several serotypes of echoviruses and group A and group B coxsackieviruses. None of the well water samples was positive for indicators of sanitary quality, namely male-specific and somatic coliphages, total coliform bacteria, Escherichia coli, and fecal enterococci. Contrary to expectations, viruses were found in all wells regardless of the level of surface water contributions. This result suggests that there were other unidentified sources, in addition to surface water, responsible for the contamination.

Applied and Environmental Microbiology↗
USGS1969

Yersinia philomiragia sp. n., a new member of the Pasteurella group of bacteria, naturally pathogenic for the muskrat (Ondatra zibethica)

A bacterium experimentally pathogenic for muskrats ( Ondatra zibethica ), white mice, mountain voles ( Microtus montanus ), and deer mice ( Peromyscus maniculatus ) was isolated from the tissues of a sick muskrat captured on the Bear River Migratory Bird Refuge (Brigham City, Utah) and from four surface water samples collected within 15 miles of that point. In culture, the cells are chiefly coccoid, but in the tissues of muskrats and voles they resemble the bizarre forms of Yersinia pestis , except for their smaller size. The characteristics of the organism are described and the name Yersinia philomiragia sp. n. is proposed.

Utah↗