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USGS2003

Water quality of selected rivers in the New England Coastal Basins in Maine, Massachusetts, New Hampshire, and Rhode Island, 1998-2000

Nine rivers were monitored routinely for a variety of field conditions, dissolved ions, and nutrients during 1998-2000 as part of the New England Coastal Basins (NECB) study of the U.S. Geological Survey (USGS) National Water-Quality Assessment (NAWQA) Program. The nine rivers, located primarily in the Boston metropolitan area, represented a gradient of increasing urbanization from 1 to 68 percent urban land use. Additional water samples were collected and analyzed for pesticides and volatile organic compounds at two of the nine rivers. Specific conductance data from all rivers were correlated with urban land use; specific conductance values increased during winter at some sites indicating the effect of road de-icing applications. In the more intensely urbanized basins, concentrations of sodium and chloride were high during winter and likely are attributed to road de-icing applications. Concentrations of total nitrogen and the various inorganic and organic nitrogen species were correlated with the percentage of urban land in the drainage basin. Total phosphorus concentrations also were correlated with urbanization in the drainage basin, but only for rivers draining less than 50 square miles. Preliminary U.S. Environmental Protection Agency total nitrogen and total phosphorus criteria for the rivers in the area were frequently exceeded at many of the rivers sampled. At the two sites monitored for pesticides and volatile organic compounds, the Aberjona and Charles Rivers near Boston, greater detection frequencies of pesticides were in samples from the spring and summer when pesticide usage was greatest. At both sites, herbicides were detected more commonly than insecticides. The herbicides prometon and atrazine and the insecticide diazinon were detected in over 50 percent of all samples collected from both rivers. No water samples contained pesticide concentrations exceeding any U.S. Environmental Protection Agency drinking-water standard or criteria for protecting freshwater aquatic life. The volatile organic compounds trichloroethylene, tetrachloroethylene, and cis-1,2- dichloroethylene--all solvents and de-greasers--were detected in all water samples from both rivers. The gasoline oxygenate methyl tert-butyl ether (MTBE) and the disinfection by-product chloroform were detected in all but one water sample from the two rivers. Two water samples from the Charles River had trichloroethylene concentrations that exceeded the U.S. Environmental Protection Agency Maximum Contaminant Level of 5 micrograms per liter for drinking water. Selected water-quality data from two NCEB rivers in the Boston metropolitan area were compared to two similarly sized intensely urban rivers in another NAWQA study area in the New York City metropolitan area and to other urban rivers sampled as part of the NAWQA Program nationally. Nutrient total nitrogen and total phosphorus concentrations and yields were less in the NECB study area than in the other study areas. In addition, the pesticides atrazine, carbaryl, diazinon, and prometon were detected less frequently and at lower concentrations in the two NECB rivers than in the New York City area streams or in the other urban NAWQA streams. Concentrations of the insecticides diazinon and carbaryl were detected more frequently and at higher concentrations in the NECB study area than in the other urban rivers sampled by NAWQA nationally. Detection frequency and concentrations of volatile organic compounds generally were higher in the two NECB streams than in the New York City area streams or in other urban NAWQA streams.

Water-Resources Investigations Report↗

USGS2002

Ground-water quality in the West Salt River Valley, Arizona, 1996–98 — Relations to hydrogeology, water use, and land use

The U.S. Geological Survey collected and analyzed ground-water samples in the West Salt River Valley from 64 existing wells selected by a stratified-random procedure. Samples from an areally distributed group of 35 of these wells were used to characterize overall ground-water quality in the basin-fill aquifer. Analytes included the principal inorganic constituents, trace constituents, pesticides, and volatile organic compounds. Additional analytes were tritium, radon, and stable isotopes of hydrogen and oxygen. Analyses of replicate samples and blank samples provided evidence that the analyses of the ground-water samples were adequate for interpretation. The median concentration of dissolved solids in samples from the 35 wells was 560 milligrams per liter, which exceeded the U.S. Environmental Protection Agency Secondary Maximum Contaminant Level for drinking water. Eleven of the 35 samples had a nitrate concentration (as nitrogen) that exceeded the U.S. Environmental Protection Agency Maximum Contaminant Level for drinking water of 10 milligrams per liter. Pesticides were detected in eight samples; concentrations were below the Maximum Contaminant Levels. Deethylatrazine was most commonly detected. The pesticides were detected in samples from wells in agricultural or urban areas that have been irrigated. Concentrations of all trace constituents, except arsenic, were less than the Maximum Contaminant Levels. The concentration of arsenic exceeded the Maximum Contaminant Level of 50 micrograms per liter in two samples. Nine monitoring wells were constructed in an area near Buckeye to assess the effects of agricultural land use on shallow ground water. The median concentration of dissolved solids was 3,340 milligrams per liter in samples collected from these wells in August 1997. The nitrate concentration (as nitrogen) exceeded the Maximum Contaminant Level (10 milligrams per liter) in samples from eight of the nine monitoring wells in August 1997 and again in February 1998. Analyses of all samples collected from the monitoring wells indicated low concentrations of pesticides and volatile organic compounds. The most frequently detected pesticides were deethylatrazine and atrazine. Trichloromethane (chloroform) and tetrachloroethene (PCE) were the most frequently detected volatile organic compounds in the monitoring wells. Two compounds [dieldrin and 1,1-dichloro-2,2-bis(p-dichlorodiphenyl)ethylene (DDE)], decomposition products of two banned pesticides, aldrin and dichlorodiphenylethylene (DDT), were detected at low concentrations in samples analyzed for the agricultural land-use study. In the West Salt River Valley, a high concentration of the heavier oxygen isotope?oxygen-18?in ground water generally indicates effects of evaporation on recharge water from irrigation. Wells in undeveloped areas and wells that have openings beneath a confining bed generally yield ground water that is free of the effects of irrigation seepage. Samples from these wells did not contain detectable concentrations of pesticides. The median concentrations of nitrate (as nitrogen) and dissolved solids in samples from wells in undeveloped areas were 1.7 milligrams per liter and 257 milligrams per liter, respectively. The median concentrations of nitrate (as nitrogen) and dissolved solids in samples from wells that yield water from below confining beds were 2.0 and 747 milligrams per liter, respectively.

Arizona↗

USGS2020

Use of environmental DNA to detect the invasive aquatic plants Myriophyllum spicatum and Egeria densa in lakes

Environmental DNA (eDNA) analysis offers a promising tool for rapid and early detection of aquatic plant invasive species, but currently suffers from substantial unknowns that limit its widespread use in monitoring programs. We conducted the first study to test the factors related to eDNA-based detectability of 2 invasive aquatic plants, Egeria densa and Myriophyllum spicatum , over extended periods of time. Specifically, we examined how plant growth stage and abundance relate to detection in semi-natural and natural conditions. We conducted a mesocosm experiment over a 10-wk period to assess changes in eDNA detection as a function of plant growth and changing biomass. We also sampled lakes with varying species abundances and resampled a subset of lakes to test temporal variability in detection. We used multilevel occupancy modeling to determine factors associated with detection and generalized linear mixed effects modeling to assess important predictors of eDNA concentration. In mesocosm experiments, we found that detection was less reliable while plants were actively growing but improved as a function of increasing senescence. Plant abundance in tanks was a poor predictor of detection in water samples. These findings were supported by field sampling, which resulted in higher detections for E. densa during senescence periods and only weak or ambiguous relationships between eDNA and total plant abundance in lakes for both species. Within lakes, proximity to shallow photic zones and discrete plant patches were associated with increased detections and concentrations of eDNA. However, detection at the lake scale (based on 4 sampling stations) was typically successful only at the highest levels of plant abundance. Detection and concentrations of eDNA were consistently lower for M. spicatum than for E. densa in the mesocosm experiment and field sampling, suggesting that overall detectability of aquatic invasive plants varies by species. Our results support sampling during senescence periods to improve detection, but generally low levels of detection and weak relationships with plant abundance indicate that substantial hurdles remains to implement eDNA analysis for early detection of, and rapid response to, aquatic invasive plants.

Freshwater Science↗

USGS2017

Challenges to oil spill assessment for seabirds in the deep ocean

We synthesize impediments for evaluating effects to seabirds from open ocean hydrocarbon releases. Effects on seabirds from ship discharges, spills, and well blowouts often are poorly detected and monitored far from land. Regulatory regimes for ocean spills can result in monitoring efforts that are not entirely transparent. We illustrate how interdisciplinary technologies address deficits that hamper individual or population level assessments for seabirds, and we demonstrate where emerging technologies might be engaged to bridge gaps in oil spill monitoring. Although acute mortality from direct oil exposure poses the greatest risk to seabirds, other hazards from light-attraction, flaring, collisions, chronic pollution, and hydrocarbon inhalation around oil infrastructure also may induce bird mortality in the deep ocean.

Archives of Environmental Contamination and Toxico↗

USGS2006

Intra-seasonal NDVI change projections in semi-arid Africa

Early warning systems (EWS) tend to focus on the identification of slow onset disasters such famine and epidemic disease. Since hazardous environmental conditions often precede disastrous outcomes by many months, effective monitoring via satellite and in situ observations can successfully guide mitigation activities. Accurate short term forecasts of NDVI could increase lead times, making early warning earlier. This paper presents a simple empirical model for making 1 to 4 month NDVI projections. These statistical projections are based on parameterized satellite rainfall estimates (RFE) and relative humidity demand (RHD). A quasi-global, 1 month ahead, 1° study demonstrates reasonable accuracies in many semi-arid regions. In Africa, a 0.1° cross-validated skill assessment quantifies the technique's applicability at 1 to 4 month forecast intervals. These results suggest that useful projections can be made over many semi-arid, food insecure regions of Africa, with plausible extensions to drought prone areas of Asia, Australia and South America.

Remote Sensing of Environment↗

USGS2010

Assessing allowable take of migratory birds

Legal removal of migratory birds from the wild occurs for several reasons, including subsistence, sport harvest, damage control, and the pet trade. We argue that harvest theory provides the basis for assessing the impact of authorized take, advance a simplified rendering of harvest theory known as potential biological removal as a useful starting point for assessing take, and demonstrate this approach with a case study of depredation control of black vultures (Coragyps atratus) in Virginia, USA. Based on data from the North American Breeding Bird Survey and other sources, we estimated that the black vulture population in Virginia was 91,190 (95% credible interval = 44,520?212,100) in 2006. Using a simple population model and available estimates of life-history parameters, we estimated the intrinsic rate of growth (rmax) to be in the range 7?14%, with 10.6% a plausible point estimate. For a take program to seek an equilibrium population size on the conservative side of the yield curve, the rate of take needs to be less than that which achieves a maximum sustained yield (0.5 x rmax). Based on the point estimate for rmax and using the lower 60% credible interval for population size to account for uncertainty, these conditions would be met if the take of black vultures in Virginia in 2006 was < 3,533 birds. Based on regular monitoring data, allowable harvest should be adjusted annually to reflect changes in population size. To initiate discussion about how this assessment framework could be related to the laws and regulations that govern authorization of such take, we suggest that the Migratory Bird Treaty Act requires only that take of native migratory birds be sustainable in the long-term, that is, sustained harvest rate should be < rmax. Further, the ratio of desired harvest rate to 0.5 x rmax may be a useful metric for ascertaining the applicability of specific requirements of the National Environmental Protection Act.

Journal of Wildlife Management↗

USGS2026

PFAS contamination in Florida estuarine fishes: Levels, patterns, and estimated human and ecological health risks

Per- and polyfluoroalkyl substances (PFAS) pose a significant health threat due to their environmental persistence and toxicity. While PFAS contamination is widespread in Florida, the state currently lacks fish consumption advisories (FCAs) for these compounds, despite existing FCAs for legacy pollutants. This study quantified 40 PFAS in edible muscle tissue from 264 fish (16 species) across four estuaries along Florida's Atlantic coast to assess ecological and human health risks. The highest concentrations of total PFAS were found in Red Drum ( Sciaenops ocellatus ; 0.209 – 51.6 ng/g wet weight) and Spotted Seatrout ( Cynoscion nebulosus; 2.01 – 24.3 ng/g ww) in the Indian River Lagoon, where up to 68% of Red Drum and 75% of Spotted Seatrout exceeded ecological quality standards, indicating potential impacts on predators. PFOS was the predominant PFAS, driving ecological and human health risks. Estimated daily intakes (EDIs) of PFOS exceeded the EPA reference dose (RfD) by up to 3 orders of magnitude, with the highest exposures concentrated in Red Drum and Spotted Seatrout from the Indian River Lagoon. These findings highlight that PFAS monitoring of tissue concentrations in fish across Florida's freshwater and marine systems would be needed for accurately quantifying exposure risks. Such efforts are fundamental to informing regulatory frameworks regarding FCAs and ensuring the long-term protection of aquatic ecosystems and human health.

Florida↗

USGS2002

Comparison of soil bacterial communities in rhizospheres of three plant species and the interspaces in an arid grassland

Soil bacteria are important contributors to primary productivity and nutrient cycling in arid land ecosystems, and their populations may be greatly affected by changes in environmental conditions. In parallel studies, the composition of the total bacterial community and of members of the Acidobacterium division were assessed in arid grassland soils using terminal restriction fragment length polymorphism (TRF, also known as T-RFLP) analysis of 16S rRNA genes amplified from soil DNA. Bacterial communities associated with the rhizospheres of the native bunchgrasses Stipa hymenoides and Hilaria jamesii , the invading annual grass Bromus tectorum , and the interspaces colonized by cyanobacterial soil crusts were compared at three depths. When used in a replicated field-scale study, TRF analysis was useful for identifying broad-scale, consistent differences in the bacterial communities in different soil locations, over the natural microscale heterogeneity of the soil. The compositions of the total bacterial community and Acidobacterium division in the soil crust interspaces were significantly different from those of the plant rhizospheres. Major differences were also observed in the rhizospheres of the three plant species and were most apparent with analysis of the Acidobacterium division. The total bacterial community and the Acidobacterium division bacteria were affected by soil depth in both the interspaces and plant rhizospheres. This study provides a baseline for monitoring bacterial community structure and dynamics with changes in plant cover and environmental conditions in the arid grasslands

Applied and Environmental Microbiology↗

USGS2011

The fecal bacteria

The Fecal Bacteria offers a balanced, integrated discussion of fecal bacteria and their presence and ecology in the intestinal tract of mammals, in the environment, and in the food supply. This new volume covers their use in examining and assessing water quality in order to offer protection from illnesses related to swimming in or ingesting contaminated water, in addition to discussing their use in engineering considerations of water quality, modeling, monitoring, and regulations. Fecal bacteria are additionally used as indicators of contamination of ready-to-eat foods and fresh produce. The intestinal environment, the microbial community structure of the gut microbiota, and the physiology and genomics of this broad group of microorganisms are explored in the book. With contributions from an internationally recognized group of experts, the book integrates medicine, public health, environmental, and microbiological topics in order to provide a unique, holistic understanding of fecal bacteria. Moreover, it shows how the latest basic science and applied research findings are helping to solve problems and develop effective management strategies. For example, readers will discover how the latest tools and molecular approaches have led to our current understanding of fecal bacteria and enabled us to improve human health and water quality. The Fecal Bacteria is recommended for microbiologists, clinicians, animal scientists, engineers, environmental scientists, food safety experts, water quality managers, and students. It will help them better understand fecal bacteria and use their knowledge to protect human and environmental health. They can also apply many of the techniques and molecular tools discussed in this book to the study of a broad range of microorganisms in a variety of habitats.

Book↗

USGS2026

Breeding shorebird surveys in the Arctic National Wildlife Refuge, Alaska, suggest population declines over two decades for most species

Shorebird populations are declining globally but it generally remains unclear how those declines translate to changes at the regional scale. We conducted the first longitudinal surveys of breeding shorebirds in Alaska under the Program for Regional and International Shorebird Monitoring (PRISM), resurveying the Coastal Plain (1002 Area) of the Arctic National Wildlife Refuge (NWR) in 2019 and 2022 to compare with initial surveys conducted in 2002 and 2004. Our goals were to (1) estimate contemporary population sizes of breeding shorebirds across this 6,249 km 2 area, and (2) assess population trends for the species detected in both survey periods. We estimated population sizes for 16 species, with a combined total of 135,178 (95% CI: 113,532–156,824) in 2019 and 2022—a decline of approximately 17% (90% CI: –34% to + 3%) from 2002 and 2004 when the same survey methods were used. Four species showed a statistically significant decrease (α = 0.10): Calidris alpina arcticola (Dunlin), Limnodromus scolopaceus (Long-billed Dowitcher), Phalaropus lobatus (Red-necked Phalarope), and P. fulicarius (Red Phalarope). Only C. melanotos (Pectoral Sandpiper) showed a significant increase. Overall, 5 of 10 species—and all species combined—had a > 90% probability of decline. Population changes for the polygamous species (i.e., Phalaropus sp. and C. melanotos ), which show irruptive breeding and low breeding site fidelity, may reflect temporary immigration or emigration driven by annual environmental variation, rather than true population change. Nevertheless, the overall pattern of declines aligns with migration surveys outside the Arctic. These findings highlight the vulnerability of Arctic-breeding shorebirds to threats throughout their annual cycles and underscore the potential for sustained long-term monitoring in this rapidly changing region to inform effective, flyway-scale conservation strategies across the Western Hemisphere.

Alaska↗

USGS2009

An ecological risk assessment of the acute and chronic effects of the herbicide clopyralid to rainbow trout (Oncorhynchus mykiss)

Clopyralid (3,6-dichloro-2-pyridinecarboxylic acid) is a pyridine herbicide frequently used to control invasive, noxious weeds in the northwestern United States. Clopyralid exhibits low acute toxicity to fish, including the rainbow trout ( Oncorhynchus mykiss ) and the threatened bull trout ( Salvelinus confluentus ). However, there are no published chronic toxicity data for clopyralid and fish that can be used in ecological risk assessments. We conducted 30-day chronic toxicity studies with juvenile rainbow trout exposed to the acid form of clopyralid. The 30-day maximum acceptable toxicant concentration (MATC) for growth, calculated as the geometric mean of the no observable effect concentration (68 mg/L) and the lowest observable effect concentration (136 mg/L), was 96 mg/L. No mortality was measured at the highest chronic concentration tested (273 mg/L). The acute:chronic ratio, calculated by dividing the previously published 96-h acutely lethal concentration (96-h ALC 50 ; 700 mg/L) by the MATC was 7.3. Toxicity values were compared to a four-tiered exposure assessment profile assuming an application rate of 1.12 kg/ha. The Tier 1 exposure estimation, based on direct overspray of a 2-m deep pond, was 0.055 mg/L. The Tier 2 maximum exposure estimate, based on the Generic Exposure Estimate Concentration model (GEENEC), was 0.057 mg/L. The Tier 3 maximum exposure estimate, based on previously published results of the Groundwater Loading Effects of Agricultural Management Systems model (GLEAMS), was 0.073 mg/L. The Tier 4 exposure estimate, based on published edge-of-field monitoring data, was estimated at 0.008 mg/L. Comparison of toxicity data to estimated environmental concentrations of clopyralid indicates that the safety factor for rainbow trout exposed to clopyralid at labeled use rates exceeds 1000. Therefore, the herbicide presents little to no risk to rainbow trout or other salmonids such as the threatened bull trout.

Archives of Environmental Contamination and Toxico↗

USGS2013

The vegetation outlook (VegOut): a new method for predicting vegetation seasonal greenness

The vegetation outlook (VegOut) is a geospatial tool for predicting general vegetation condition patterns across large areas. VegOut predicts a standardized seasonal greenness (SSG) measure, which represents a general indicator of relative vegetation health. VegOut predicts SSG values at multiple time steps (two to six weeks into the future) based on the analysis of "historical patterns" (i.e., patterns at each 1 km grid cell and time of the year) of satellite, climate, and oceanic data over an 18-year period (1989 to 2006). The model underlying VegOut capitalizes on historical climate-vegetation interactions and ocean-climate teleconnections (such as El Niño and the Southern Oscillation, ENSO) expressed over the 18-year data record and also considers several environmental characteristics (e.g., land use/cover type and soils) that influence vegetation's response to weather conditions to produce 1 km maps that depict future general vegetation conditions. VegOut provides regionallevel vegetation monitoring capabilities with local-scale information (e.g., county to sub-county level) that can complement more traditional remote sensing-based approaches that monitor "current" vegetation conditions. In this paper, the VegOut approach is discussed and a case study over the central United States for selected periods of the 2008 growing season is presented to demonstrate the potential of this new tool for assessing and predicting vegetation conditions.

GIScience and Remote Sensing↗

USGS2014

Statistical analysis of the water-quality monitoring program, Upper Klamath Lake, Oregon, and optimization of the program for 2013 and beyond

Upper Klamath Lake in south-central Oregon has become increasingly eutrophic over the past century and now experiences seasonal cyanobacteria-dominated and potentially toxic phytoplankton blooms. Growth and decline of these blooms create poor water-quality conditions that can be detrimental to fish, including two resident endangered sucker species. Upper Klamath Lake is the primary water supply to agricultural areas within the upper Klamath Basin. Water from the lake is also used to generate power and to enhance and sustain downstream flows in the Klamath River. Water quality in Upper Klamath Lake has been monitored by the Klamath Tribes since the early 1990s and by the U.S. Geological Survey (USGS) since 2002. Management agencies and other stakeholders have determined that a re-evaluation of the goals for water-quality monitoring is warranted to assess whether current data-collection activities will continue to adequately provide data for researchers to address questions of interest and to facilitate future natural resource management decisions. The purpose of this study was to (1) compile an updated list of the goals and objectives for long-term water-quality monitoring in Upper Klamath Lake with input from upper Klamath Basin stakeholders, (2) assess the current water-quality monitoring programs in Upper Klamath Lake to determine whether existing data-collection strategies can fulfill the updated goals and objectives for monitoring, and (3) identify potential modifications to future monitoring plans in accordance with the updated monitoring objectives and improve stakeholder cooperation and data-collection efficiency. Data collected by the Klamath Tribes and the USGS were evaluated to determine whether consistent long-term trends in water-quality variables can be described by the dataset and whether the number and distribution of currently monitored sites captures the full range of environmental conditions and the multi-scale variability of water-quality parameters in the lake. Also, current monitoring strategies were scrutinized for unnecessary redundancy within the overall network.

Oregon↗

USGS2012

Integrated monitoring of ecological conditions in wetland-upland landscapes

Landscapes of interwoven wetlands and uplands offer a rich set of ecosystem goods and services. Managing lands to maximize ecosystem services requires information that distinguishes change caused by local actions from broader-scale shifts in climate, land use, and other forms of global change. Satellite and airborne sensors collect valuable data for this purpose, especially when the data are analyzed along with data collected from ground-based sensors. The U.S. Geological Survey (USGS) is using remote sensing technology in this way as part of the Terrestrial Wetland Global Change Research Network to assess effects of climate change interacting with land-use change and other potential stressors along environmental gradients of wetland-upland landscapes in the United States and Canada.

Fact Sheet↗

USGS2007

Local and regional factors affecting atmospheric mercury speciation at a remote location

Atmospheric concentrations of elemental (Hg0), reactive gaseous (RGM), and particulate (PHg) mercury were measured at two remote sites in the midwestern United States. Concurrent measurements of Hg0, PHg, and RGM obtained at Devil's Lake and Mt. Horeb, located approximately 65 km apart, showed that Hg0 and PHg concentrations were affected by regional, as well as local sources, while RGM was mainly impacted by local sources. Plumes reaching the Devil's Lake site from a nearby coal-fired power plant significantly impacted SO2 and RGM concentrations at Devil's Lake, but had little impact on Hg0. Our findings suggest that traditional modeling approaches to assess sources of mercury deposited that utilize source emissions and large-scale grids may not be sufficient to predict mercury deposition at sensitive locations due to the importance of small-scale sources and processes. We suggest the use of a receptor-based monitoring to better understand mercury source-receptor relationships.

Wisconsin↗

USGS2001

Understanding aquatic animal virus survival and trafficking and its role in risk assessment

The stability of infectious agents in different media and under different physical and chemical environments has been extensively studied for some viruses and virtually ignored for others. Gaps in our knowledge are due in part to difficulties in reproducing virus «life cycles» and determination if the agent is in fact inactive. Additionally, isolation of the agent under certain conditions can present significant challenges. Studies on the susceptibility of viruses to different physical or chemical parameters have often been conducted under artificial conditions and quantitative data on the rate of inactivation are lacking for many agents. Using infectious hematopoietic necrosis virus (IHNV) as an example, survival was assessed under different environmental conditions. Three IHNV isolates that exhibited antigenic and genetic differences were diluted either in freshwater collected from a spring, after it passed through a fish farm, or the river that received water from the fish farm. Each treatment was incubated at 15o C in a water bath and samples were removed daily. Virus concentrations were determined by plaque assay on EPC cells. Virus suspended in spring water survived longer than virus incubated in water obtained from a fish farm or the river. Virus suspended in river water exhibited a 99.99% reduction in virus concentrations in less than 24 h. Survival of IHNV was also evaluated at different temperatures. A 1982 isolate appeared to be less temperature sensitive than isolates collected in 1990. A preliminary study was also conducted to determine the genetic similarity of IHNV isolates present downstream in a river system from the state of Idaho. Isolates were analyzed using the RNase protection assay (RPA) and by nucleotide sequencing of RT-PCR products of specific isolates. Genetic typing of IHNV allows monitoring of virus traffic and may provide insight into the epizootiology and mechanisms of virus spread. These results illustrate the complexity in evaluating virus survival and trafficing and using this sort of information in risk assessment.

Conference Paper↗

USGS2019

Reducing sampling uncertainty in aeolian research to improve change detection

Measurements of aeolian sediment transport support our understanding of mineral dust impacts on Earth and human systems and assessments of aeolian process sensitivities to global environmental change. However, sample design principles are often overlooked in aeolian research. Here, we use high‐density field measurements of sediment mass flux across land use and land cover types to examine sample size and power effects on detecting change in aeolian transport. Temporal variances were 1.6 to 10.1 times the magnitude of spatial variances in aeolian transport for six study sites. Differences in transport were detectable for >67% of comparisons among sites using ~27 samples. Failure to detect change with smaller sample sizes suggests that aeolian transport measurements and monitoring are much more uncertain than recognized. We show how small and selective sampling, common in aeolian research, gives the false impression that differences in aeolian transport can be detected, potentially undermining inferences about process and impacting reproducibility of aeolian research.

Journal of Geophysical Research F: Earth Surface↗

USGS2006

USGS science in Menlo Park -- a science strategy for the U.S. Geological Survey Menlo Park Science Center, 2005-2015

In the spring of 2004, the U.S. Geological Survey (USGS) Menlo Park Center Council commissioned an interdisciplinary working group to develop a forward-looking science strategy for the USGS Menlo Park Science Center in California (hereafter also referred to as "the Center"). The Center has been the flagship research center for the USGS in the western United States for more than 50 years, and the Council recognizes that science priorities must be the primary consideration guiding critical decisions made about the future evolution of the Center. In developing this strategy, the working group consulted widely within the USGS and with external clients and collaborators, so that most stakeholders had an opportunity to influence the science goals and operational objectives. The Science Goals are to: Natural Hazards: Conduct natural-hazard research and assessments critical to effective mitigation planning, short-term forecasting, and event response. Ecosystem Change: Develop a predictive understanding of ecosystem change that advances ecosystem restoration and adaptive management. Natural Resources: Advance the understanding of natural resources in a geologic, hydrologic, economic, environmental, and global context. Modeling Earth System Processes: Increase and improve capabilities for quantitative simulation, prediction, and assessment of Earth system processes. The strategy presents seven key Operational Objectives with specific actions to achieve the scientific goals. These Operational Objectives are to: Provide a hub for technology, laboratories, and library services to support science in the Western Region. Increase advanced computing capabilities and promote sharing of these resources. Enhance the intellectual diversity, vibrancy, and capacity of the work force through improved recruitment and retention. Strengthen client and collaborative relationships in the community at an institutional level. Expand monitoring capability by increasing density, sensitivity, and efficiency and reducing costs of instruments and networks. Encourage a breadth of scientific capabilities in Menlo Park to foster interdisciplinary science. Communicate USGS science to a diverse audience.

Circular↗