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At least 811 records · Page 45Linked to original sources

Comparison of physical to numerical mixing with different tracer advection schemes in estuarine environments

The numerical simulation of estuarine dynamics requires accurate prediction for the transport of tracers such as temperature and salinity. During the simulation of these processes, all numerical models introduce two kinds of tracer mixing: 1) by parameterizing the tracer eddy diffusivity through turbulence models leading to a source of physical mixing and 2) discretization of the tracer advection term that leads to numerical mixing. Both physical and numerical mixing vary with the choice of horizontal advection schemes, grid resolution, and time step. By simulating four idealized cases, this study compares physical and numerical mixing for three different tracer advection schemes. Idealized domains involving only physical and numerical mixing are used to verify the implementation of mixing terms by equating them to total tracer variance. Among the three horizontal advection schemes, the scheme that causes the least numerical mixing while maintaining a sharp front also results in larger physical mixing. Instantaneous spatial comparison of mixing components shows that physical mixing is dominant in regions of large vertical gradients while numerical mixing dominates at sharp fronts that contain large horizontal tracer gradients. In the case of estuaries, numerical mixing may dominate locally over physical mixing; however, the amount of volume integrated numerical mixing through the domain compared to integrated physical mixing remains relatively small for this particular modeling system.

Journal of Marine Science and Engineering↗

Prevalence of pure versus mixed snow cover pixels across spatial resolutions in alpine environments: implications for binary and fractional remote sensing approaches

Remote sensing of snow-covered area (SCA) can be binary (indicating the presence/absence of snow cover at each pixel) or fractional (indicating the fraction of each pixel covered by snow). Fractional SCA mapping provides more information than binary SCA, but is more difficult to implement and may not be feasible with all types of remote sensing data. The utility of fractional SCA mapping relative to binary SCA mapping varies with the intended application as well as by spatial resolution, temporal resolution and period of interest, and climate. We quantified the frequency of occurrence of partially snow-covered (mixed) pixels at spatial resolutions between 1 m and 500 m over five dates at two study areas in the western U.S., using 0.5 m binary SCA maps derived from high spatial resolution imagery aggregated to fractional SCA at coarser spatial resolutions. In addition, we used in situ monitoring to estimate the frequency of partially snow-covered conditions for the period September 2013–August 2014 at 10 60-m grid cell footprints at two study areas with continental snow climates. Results from the image analysis indicate that at 40 m, slightly above the nominal spatial resolution of Landsat, mixed pixels accounted for 25%–93% of total pixels, while at 500 m, the nominal spatial resolution of MODIS bands used for snow cover mapping, mixed pixels accounted for 67%–100% of total pixels. Mixed pixels occurred more commonly at the continental snow climate site than at the maritime snow climate site. The in situ data indicate that some snow cover was present between 186 and 303 days, and partial snow cover conditions occurred on 10%–98% of days with snow cover. Four sites remained partially snow-free throughout most of the winter and spring, while six sites were entirely snow covered throughout most or all of the winter and spring. Within 60 m grid cells, the late spring/summer transition from snow-covered to snow-free conditions lasted 17–56 days and averaged 37 days. Our results suggest that mixed snow-covered snow-free pixels are common at the spatial resolutions imaged by both the Landsat and MODIS sensors. This highlights the additional information available from fractional SCA products and suggests fractional SCA can provide a major advantage for hydrological and climatological monitoring and modeling, particularly when accurate representation of the spatial distribution of snow cover is critical.

Remote Sensing↗

Non-native Pond Sliders cause long-term decline of native Sonora Mud Turtles: A 33-year before-after study in an undisturbed natural environment

Using a before-after study design in a stable, largely undisturbed pond habitat and a dataset spanning 33 years, we document and describe the decline of native Sonora mud turtles (Kinosternon sonoriense) after the introduction of non-native pond sliders (Trachemys scripta). The Sonora mud turtle population in Montezuma Well in central Arizona, USA, declined to less than 25% of previous numbers, from 372 ± 64 in 1983 to 80 ± 21 in 2011. We trapped and removed the non-native turtles between 2007 and 2012 and after removal of the non-natives, the Sonora mud turtle population increased to 139 ± 34 in 2015. The native turtles also significantly increased basking activity after removal of the non-natives, paralleling results of small-scale mesocosm studies showing that pond sliders negatively affect basking rates of native turtle species. Reproductive rates of female Sonora mud turtles (numbers of females with eggs) were lower during the period of peak non-native turtle abundance, and increased after removal of the non-native turtles. We hypothesize that the reduction in effective reproductive rate links interference competition (reflected in reduced basking rates) to the long-term decline of the native mud turtles. Results from the undisturbed natural system of Montezuma Well provide new insights on the overall occurrence, magnitude, and mechanisms of negative effects of introduced pond sliders on native turtle species. Sonora mud turtles are very different in their morphology, behavior, and ecology from pond sliders and from native turtles in other studies, suggesting that impacts of non-native pond sliders are more pervasive than previously thought.

Aquatic Invasions↗

Migratory behavior of Chinook salmon microjacks reared in artificial and natural environments

Emigration was evaluated for hatchery Chinook salmon ( Oncorhynchus tshawytscha ) microjacks (age-1 mature males) and immature parr (age-1 juveniles, both sexes) released from both a hatchery and a natural stream (fish released as fry). In the hatchery, volitional releases (&sim;14 to 15 months post-fertilization) to an adjacent river occurred during October&ndash;November. The hatchery release was monitored by using an experimental volitional release that diverted fish to a neighboring raceway. Fish captured during the experimental release (range 361&ndash;4,321 volitional migrants) were made up of microjacks and immature parr. Microjacks were found only in the migrant samples, averaged 18% (range 0&ndash;52%) of all migrants, and were rarely found in non-migrant samples. In comparison, immature parr were common in both the migrant and non-migrant samples. Microjacks were significantly longer (9%), heavier (36%), and had a greater condition factor (16%) than migrant immature parr (P<0.01). In addition, they differed significantly (P<0.01) from non-migrant immature parr; 10% longer, 44% heavier and 14% greater condition factor. In natural streams, microjacks were captured significantly earlier (P<0.01) than immature parr during the late-summer/fall migration and comprised 9&ndash;89% of all fish captured. Microjacks have the potential to contribute to natural spawning populations but can also represent a loss of productivity to hatchery programs or create negative effects by introducing non-native genes to wild populations and should be monitored by fishery managers.

Journal of Fish and Wildlife Management↗

Environment affects sucker catch rate, size structure, species composition, and precision in boat electrofishing samples

Catostomidae (catostomids) are suckers of the order Cypriniformes, and the majority of species are native to North America; however, species in this group are understudied and rarely managed. The popularity in bowfishing and gigging for suckers in the United States has increased concerns related to overfishing. Little information exists about the relative gear effectiveness for sampling catostomids. We sought to evaluate the relative effectiveness of boat electrofishing for sampling Black Redhorse Moxostoma duquesnei , Golden Redhorse M. erythrurum , Northern Hogsucker Hypentelium nigricans , White Sucker Catostomus commersonii , and Spotted Sucker Minytrema melanops populations in Lake Eucha, Oklahoma. We used an information theoretic approach to determine the abiotic variables related to sucker catch per effort ( C / f ). Our analysis indicated that sucker C / f was highest during the night and decreased with increasing water temperature. Sucker size structure was significantly different between daytime and nighttime samples; however, effect size estimates for size structure comparisons indicated that size distributions exhibited moderate overlap. Distributional comparisons indicated that daytime and nighttime samples were similar for fish greater than 180 mm in total length. Effect size estimates also indicated little association between the proportion of each species captured and time of day or water temperature. Night electrofishing in reservoirs at water temperatures from 16 to 25°C yielded the most precise C / f estimates, with the highest numbers of suckers collected at water temperatures from 6 to 15°C. Further study of the relationship between abiotic variables and catostomid catchability using various gears will be beneficial to agencies interested in these populations.

Oklahoma↗

Hydrodynamic control of phytoplankton loss to the benthos in an estuarine environment

Field experiments were undertaken to measure the influence of hydrodynamics on the removal of phytoplankton by benthic grazers in Suisun Slough, North San Francisco Bay. Chlorophyll a concentration boundary layers were found over beds inhabited by the active suspension feeders Corbula amurensis and Corophium alienense and the passive suspension feeders Marenzellaria viridis and Laonome sp. Benthic losses of phytoplankton were estimated via both the control volume and the vertical flux approach, in which chlorophyll a concentration was used as a proxy for phytoplankton biomass. The rate of phytoplankton loss to the bed was positively correlated to the bed shear stress. The maximum rate of phytoplankton loss to the bed was five times larger than estimated by laboratory-derived pumping rates for the active suspension feeders. Reasons for this discrepancy are explored including a physical mechanism whereby phytoplankton is entrained in a near-bed fluff layer where aggregation is mediated by the presence of mucus produced by the infaunal community.

California↗

A basin-scale approach for assessing water resources in a semiarid environment: San Diego region, California and Mexico

Many basins throughout the world have sparse hydrologic and geologic data, but have increasing demands for water and a commensurate need for integrated understanding of surface and groundwater resources. This paper demonstrates a methodology for using a distributed parameter water-balance model, gaged surface-water flow, and a reconnaissance-level groundwater flow model to develop a first-order water balance. Flow amounts are rounded to the nearest 5 million cubic meters per year. The San Diego River basin is 1 of 5 major drainage basins that drain to the San Diego coastal plain, the source of public water supply for the San Diego area. The distributed parameter water-balance model (Basin Characterization Model) was run at a monthly timestep for 1940–2009 to determine a median annual total water inflow of 120 million cubic meters per year for the San Diego region. The model was also run specifically for the San Diego River basin for 1982–2009 to provide constraints to model calibration and to evaluate the proportion of inflow that becomes groundwater discharge, resulting in a median annual total water inflow of 50 million cubic meters per year. On the basis of flow records for the San Diego River at Fashion Valley (US Geological Survey gaging station 11023000), when corrected for upper basin reservoir storage and imported water, the total is 30 million cubic meters per year. The difference between these two flow quantities defines the annual groundwater outflow from the San Diego River basin at 20 million cubic meters per year. These three flow components constitute a first-order water budget estimate for the San Diego River basin. The ratio of surface-water outflow and groundwater outflow to total water inflow are 0.6 and 0.4, respectively. Using total water inflow determined using the Basin Characterization Model for the entire San Diego region and the 0.4 partitioning factor, groundwater outflow from the San Diego region, through the coastal plain aquifer to the Pacific Ocean, is calculated to be approximately 50 million cubic meters per year. The area-scale assessment of water resources highlights several hydrologic features of the San Diego region. Groundwater recharge is episodic; the Basin Characterization Model output shows that 90 percent of simulated recharge occurred during 3 percent of the 1982–2009 period. The groundwater aquifer may also be quite permeable. A reconnaissance-level groundwater flow model for the San Diego River basin was used to check the water budget estimates, and the basic interaction of the surface-water and groundwater system, and the flow values, were found to be reasonable. Horizontal hydraulic conductivity values of the volcanic and metavolcanic bedrock in San Diego region range from 1 to 10 m per day. Overall, results establish an initial hydrologic assessment formulated on the basis of sparse hydrologic data. The described flow variability, extrapolation, and unique characteristics represent a realistic view of current (2012) hydrologic understanding for the San Diego region.

California↗

Quantitative and qualitative studies of gut flora in striped bass from estuarine and coastal marine environments

Examination of the intestinal contents of 130 striped bass ( Morone saxatilis ) collected from the Hudson River and Long Island Sound during May to October 1981 showed that opportunistic fish pathogens—especially Aeromonas hydrophila —predominated in samples from both locations. Other isolates from both groups of striped bass included Vibrio , pseudomonads, flavobacteria, Alcaligenes , and enterics. Small numbers of Micrococcus , Bacillus , Corynebacterium , and Acinetobacter were also isolated. Total numbers of bacteria in the intestines were 100 to 1,000 times higher in striped bass from the Hudson River than in those from Long Island Sound.

Journal of Wildlife Diseases↗

Response to heavy, non-floating oil spilled in a Great Lakes river environment: a multiple-lines-of-evidence approach for submerged oil assessment and recovery

The Enbridge Line 6B pipeline release of diluted bitumen into the Kalamazoo River downstream of Marshall, MI in July 2010 is one of the largest freshwater oil spills in North American history. The unprecedented scale of impact and massive quantity of oil released required the development and implementation of new approaches for detection and recovery. At the onset of cleanup, conventional recovery techniques were employed for the initially floating oil and were successful. However, volatilization of the lighter diluent, along with mixing of the oil with sediment during flooded, turbulent river conditions caused the oil to sink and collect in natural deposition areas in the river. For more than three years after the spill, recovery of submerged oil has remained the predominant operational focus of the response. The recovery complexities for submerged oil mixed with sediment in depositional areas and long-term oil sheening along approximately 38 miles of the Kalamazoo River led to the development of a multiple-lines-of-evidence approach comprising six major components: geomorphic mapping, field assessments of submerged oil (poling), systematic tracking and mapping of oil sheen, hydrodynamic and sediment transport modeling, forensic oil chemistry, and net environmental benefit analysis. The Federal On-Scene Coordinator (FOSC) considered this information in determining the appropriate course of action for each impacted segment of the river. New sources of heavy crude oils like diluted bitumen and increasing transportation of those oils require changes in the way emergency personnel respond to oil spills in the Great Lakes and other freshwater ecosystems. Strategies to recover heavy oils must consider that the oils may suspend or sink in the water column, mix with fine-grained sediment, and accumulate in depositional areas. Early understanding of the potential fate and behavior of diluted bitumen spills when combined with timely, strong conventional recovery methods can significantly influence response success.

Michigan↗

Effect of environment on reproduction and growth of Mysis relicta

Published and unpublished data were examined to determine whether the time to first reproduction, brood size, and growth rate of Mysis relicta are related to environmental conditions. Time to first reproduction ranged from 1 year in eutrophic lakes to 4 years in a ultraoligotrophic lake. Mysids in nutrient-rich lakes may have 45 eggs per brood, whereas those in less productive lakes had 10-12 eggs per brood. Growth rates ranged from 1.0 to 1.5 mm/month in productive lakes to only 0.2 mm/month in ultraoligotrophic Lake Tahoe. Some differences in reproduction and growth rate consistent with the above observation occurred between areas of Lakes Tahoe and Michigan that differed in trophic conditions.

American Fisheries Society Symposium↗