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At least 793 records · Page 44Linked to original sources

USGS1902

Fossil flora of the John Day basin, Oregon

For a number of years I have been gradually accumulating material for a thorough revision of the Tertiary floras of the Pacific slope. Fossil plants are known to occur at numerous points within this area, and their study and identification has already furnished valuable data bearing on the geological history of the region, and when still further exploited it is confidently expected that they will afford more exact data for the use of geologists. This investigation is progressing satisfactorily, and at no distant day it is hoped to have it in form for final publication. From time to time various members of the United States Geological Survey, as well as others not connected with this organization, have sent in small collections of fossil plants for determination. These have been studied and reported upon as fully as the condition of the problem permitted, so that the determinations could be immediately available to geologists, but with the reservation that none of the questions could be fully settled until all known material had been studied and properly correlated. The rich fossil plant deposits in the John Day Basin, as set forth more fully in the historical account which follows, have been known for a period of nearly fifty years, but their study has been carried on in a more or less desultory manner. There has also been considerable confusion as to the horizons whence these plants came. As various species of plants described originally from the John Day region were detected in various other localities in Oregon, and in surrounding areas, as central Washington, western Idaho, and northern California, it became more than ever apparent that a thorough study of all material obtainable from this type area would be necessary before any definite or satisfactory conclusions could be reached. The immediate incentive for this revision was furnished by the receipt of a considerable collection of plants, made by Dr. John C. Merriam in 1900 while he was in charge of an expedition into this region made under the auspices of the University of California. When these plants were submitted to me for study, it was thought possible to present their description, together with a revision of our knowledge of the previously known forms, within a space sufficiently small to permit the publication of the matter as an appendix to a paper on the general geology of the area, then in preparation by Dr. Merriam. But it soon became apparent that this could not be adequately done within the space available, and a short preliminary report was prepared for and published by Dr. Merriam. The results of a complete restudy of all available fossil plant material from the John Day Basin are now presented. I wish to record my great indebtedness to Dr. Merriam, who not only accompanied me at a considerable personal sacrifice on a trip through the region in 1901, but placed unreservedly at my disposal all material bearing in any way on the problem then in the paleontological museum of the University of California. To Dr. Arthur Hollick I am indebted for the loan of all material from the John Day region belonging to Columbia University, and now deposited in the New York Botanical Garden at Bronx Park. This material, together with the rich collections belonging to the United States National Museum, represents practically all now known to have come from the John Day Basin.

Oregon↗

USGS2022

Compilation of existing data for sand resource studies in Federal and California State Waters of the San Francisco, Oceanside, and Silver Strand littoral cell study areas along the continental shelf of California—Strategy for field studies and sand resource assessment

Executive Summary The Sand Resources Project was established through collaborative agreements between the U.S. Geological Survey (USGS), the Bureau of Ocean Energy Management (BOEM), and the California Ocean Protection Council (OPC) with the purpose of evaluating sand and gravel resources in Federal and California State Waters for potential use in future beach-nourishment projects. Project partners worked in collaboration with California Coastal Sediment Management Workgroup (CSMW) members to define priority study areas for this work based on the potential for finding sand within the broader region and the needs for this sand as shown by beach erosion areas of concern in the adjacent littoral cells. The final study areas were defined to be (1) the San Francisco Littoral Cell, (2) the Oceanside Littoral Cell, and (3) the Silver Strand Littoral Cell. A two-stage approach was used to assess the study areas. This report addresses the initial stage, which is a synthesis of the existing geophysical and sediment-sampling data in each area. This allowed for evaluations of the data availability, data gaps, and general patterns of sediment thickness and grain size. This report provides a description of the methods and results of this synthesis. The findings from this work were used to refine study area boundaries and develop sampling plans for stage two of the project. Stage two of the project, the results of which will be published separately, will be the collection, processing, and synthesis of new data, including high-resolution geophysical surveys and sediment cores within the three study areas. The data collected will provide new information about the three study areas including sediment thickness, grain-size distributions, and total organic carbon. The description and results of stage two of the work is included in another USGS report (Warrick and others, 2022).

California↗

USGS1999

A list of Michigan Corixidae (Hemiptera) with four new state records from the Great Lakes of Michigan

Corisella tarsalis , Sigara lineata , Trichocorixa borealis , and Trichocorixa kanza were recently identified from Michigan and constitute new state records. These four species were collected from two of the Great Lakes or their connecting rivers and increase the number of corixids for Michigan to 47 species. We newly report the genus Corisella for Michigan. Although most abundant in the western United States and Canada, scattered Corisella records in the Midwest (Wisconsin, Ohio and Ontario, Canada) indicated there was a good probability of its occurrence in Michigan. Finally, we provide an updated list of Michigan Corixidae.

Entomological News↗

USGS1979

North American Paleozoic land snails, with a summary of other Paleozoic nonmarine snails

Land snails from the Paleozoic of North America are known from the coal fields of eastern Canada, from the Dunkard basin west of the Allegheny Mountains, and from the western margin of the Illinois basin. The earliest finds were made about 125 years ago; essentially no new information has been recorded for a century. Large collections of Anthracopupa from the Dunkard basin sparked inquiry into the land snails from the other two areas. Studies using the SEM (scanning electron microscope) have provided considerable insight into microdetails of shell structure, which allow systematic assignment of these gastropods. All may be assigned to extant families, except one, for which insufficient material allows only superfamily assignment. The prosobranch Dawsonella is confirmed as being a terrestrial neritacean gastropod. To date, it is known only from the upper Middle Pennsylvanian of Illinois and Indiana. All the other Paleozoic land snails are stylommatophoran pulmonates; their current classification as nonmarine cyclophoraceans is not correct. Restudy of material from the Joggins section of Nova Scotia indicates that representatives of two ordinal groups of pulmonates appeared simultaneously in upper Lower Pennsylvanian strata; the oldest land prosobranch is found in only very slightly younger rocks. Zonites (Conulus) priscus is reassigned to the new genus Protodiscus in the extant family Discidae. Dendropupa is placed within the family Enidae, Anthraaopupa is placed in the family Tornatellinidae, and 'Pupa' bigsbii is assigned to the superfamily Pupillacea. All four of these family-level taxa are diverse and belong to two orders within the superorder Stylommatophora, heretofore considered a derived rather than an ancestral stock. Anthracopupa ohioensis Whitfield is a highly variable species, and two other species Naticopsis (?) diminuta and A.(?) dunkardona, both named by Stauffer and Schroyer, are placed in synonymy with it. To obtain taxonomic data to support the family placement of Anthracopupa, growth forms of modern pupillid and tornatellinid snails have been distinguished. The apertural barriers in Anthracopupa are identical in placement and growth pattern with those of living Tornatellinidae and independently confirm the family placement derived from study of the general form. One new species, A. sturgeoni, has been named. Anthracopupa is found most commonly in thin limestones interpreted as having been deposited in pools into which the small shells floated. Dendropupa is most commonly found in erect tree stumps that were covered by rapid sedimentation. Both environments are similar to those in which the shells of allied living species may be found today, and the fossils support environmental interpretations made entirely from lithology. A survey of the few European occurrences of Paleozoic land snails indicates that both Anthracopupa and Dendropupa occur in Lower Permian strata; Anthracopupa is known from beds as old as Westphalian B. These genera cannot be used for determining the Carboniferous-Permian boundary. Both the long local stratigraphic range of A. brittanica and D. vetusta reported in the literature and the moderately long range and great variability of A. ohioensis suggest that the land snails have little stratigraphic utility. On the other hand, the occurrence of these land snails in the late Paleozoic of the Northern Hemisphere provides further fossil evidence suggestive of a closed Atlantic Ocean at that time. A comparison of the Paleozoic and the present distributions of land -snail families on both sides of the Atlantic provides some interesting data on geographic shifts of organisms. Finally, the assignment of the earliest land snails to extant taxa at the family level indicates that the subclass Pulmonata has been very conservative in its evolution after initial radiation. A few notes on Paleozoic freshwater snails complete this survey.

Professional Paper↗

USGS2014

U.S. Geological Survey Karst Interest Group Proceedings, Carlsbad, New Mexico, April 29-May 2, 2014

Karst aquifer systems are present throughout parts of the United States and some of its territories, and have developed in carbonate rocks (primarily limestone and dolomite) that span an interval of time encompassing more than 550 million years. The depositional environments, diagenetic processes, post-depositional tectonic events, and geochemical weathering processes that form karst aquifers are varied and complex, and involve biological, chemical, and physical changes. These factors, combined with the diverse climatic regimes under which karst development in these rocks has taken place, result in the unique dual- or triple-porosity nature of karst aquifers. These complex hydrogeologic systems typically represent challenging and unique conditions to scientists attempting to study groundwater flow and contaminant transport in these terrains. The dissolution of carbonate rocks and the subsequent development of distinct and beautiful landscapes, caverns, and springs has resulted in the most exceptional karst areas of the United States being designated as national or state parks; commercial caverns and known privately owned caves number in the tens of thousands. Both public and private properties provide access for scientists to study the flow of groundwater in situ. Likewise, the range and complexity of landforms and groundwater flow systems associated with karst terrains are enormous, perhaps more than for any other aquifer type. Karst aquifers and landscapes that form in tropical areas, such as the cockpit karst along the north coast of Puerto Rico, differ greatly from karst landforms in more arid climates, such as the Edwards Plateau in west-central Texas or the Guadalupe Mountains near Carlsbad, New Mexico, where hypogenic processes have played a major role in speleogenesis. Many of these public and private lands also contain unique flora and fauna associated with these karst hydrogeologic systems. As a result, numerous federal, state, and local agencies have a strong interest in the study of karst terrains. Many of the major springs and aquifers in the United States have developed in carbonate rocks, such as the Floridan aquifer system in Florida and parts of Alabama, Georgia, and South Carolina; the Ozark Plateaus aquifer system in parts of Arkansas, Kansas, Missouri, and Oklahoma; and the Edwards-Trinity aquifer system in west-central Texas. These aquifers, and the springs that discharge from them, serve as major water-supply sources and as unique ecological habitats. Competition for the water resources of karst aquifers is common, and urban development and the lack of attenuation of contaminants in karst areas can impact the ecosystem and water quality of these aquifers. The concept for developing a platform for interaction among scientists within the U.S. Geological Survey (USGS) working on karst-related studies evolved from the November 1999 National Ground-Water Meeting of the USGS. As a result, the Karst Interest Group (KIG) was formed in 2000. The KIG is a loose-knit, grass-roots organization of USGS and non-USGS scientists and researchers devoted to fostering better communication among scientists working on, or interested in, karst science. The primary mission of the KIG is to encourage and support interdisciplinary collaboration and technology transfer among scientists working in karst areas. Additionally, the KIG encourages collaborative studies between the different mission areas of the USGS as well as other federal and state agencies, and with researchers from academia and institutes. The KIG also encourages younger scientists by participation of students in the poster and oral sessions. To accomplish its mission, the KIG has organized a series of workshops that are held near nationally important karst areas. To date (2014) six KIG workshops, including the workshop documented in this report, have been held. The workshops typically include oral and poster sessions on selected karst-related topics and research, as well as field trips to local karst features. Proceedings of the workshops are published by the USGS and are available online at http://water.usgs.gov/ogw/karst/kig . The first KIG workshop was held in St. Petersburg, Florida, February 13–16, 2001, in the vicinity of the large springs and other karst features of the Floridan aquifer system. The second KIG workshop was held August 20–22, 2002, in Shepherdstown, West Virginia, in proximity to the carbonate aquifers of the northern Shenandoah Valley and highlighted an invited presentation on karst literature by the late Barry F. Beck of P.E. LaMoreaux and Associates. The third KIG workshop was held September 12–15, 2005, in Rapid City, South Dakota, nearby to karst features in evaporites and limestones of the Madison Group in the Black Hills of South Dakota, including Wind Cave National Park and Jewel Cave National Monument. The workshop also included a featured presentation by Thomas Casadevall, Central Region Director, USGS, on the status of earth science at the USGS and evening trips to Jewel Cave led by Mike Wiles, National Park Service (NPS) and Wind Cave led by Rod Horrocks, NPS. The fourth KIG workshop was held May 27–29, 2008, and hosted by the Hoffman Environmental Research Institute and Center for Cave and Karst Studies at Western Kentucky University in Bowling Green, Kentucky, near Mammoth Cave National Park and karst features of the Chester Upland and Pennyroyal Plateau. The workshop featured a late-night field trip into Mammoth Cave with Rickard Toomey and Rick Olsen, NPS. The fifth workshop was held April 26–29, 2011, and was a joint meeting of the USGS KIG and University of Arkansas HydroDays, hosted by the Department of Geosciences at the University of Arkansas in Fayetteville. The workshop featured an outstanding field trip to the unique karst terrain along the Buffalo National River of the southern Ozarks and a keynote presentation on paleokarst in the United States by Art and Peggy Palmer. This sixth and current 2014 KIG workshop is hosted by the National Cave and Karst Research Institute (NCKRI) in Carlsbad, New Mexico, with Director of NCKRI, George Veni, serving as co-chair of the workshop with Eve Kuniansky, USGS. The session planning committee for this sixth workshop includes Van Brahana, USGS retired and University of Arkansas Professor Emeritus; Tom Byl, USGS and Tennessee State University; Zelda Bailey, former Director of NCKRI and retired Director, National Institute of Standards and Technology, Boulder Laboratory, Colorado; Patrick Tucci, USGS retired; and Mike Bradley, Allan Clark, Geoff Delin, Daniel Doctor, James Kaufmann, Eve Kuniansky, Randy Orndorff, Larry Spangler, and Dave Weary of the USGS. The karst hydrology field trip on Thursday will be led by Lewis Land (NCKRI karst hydrologist) and the optional Friday field trip on the geology of Carlsbad Caverns National Park will be led by George Veni. The keynote speaker is Dr. Penelope Boston, Director of Cave and Karst Studies at New Mexico Tech, Socorro, and Academic Director at NCKRI, who will address the future of karst research. Additionally, there is a featured presentation “Irish karst and its management,” by Caoimhe Hickey, The Geological Survey of Ireland, preceding a panel discussion on “Collaboration During Times of Limited Resources.” The extended abstracts of USGS authors were peer reviewed and approved for publication by the U.S. Geological Survey. Articles submitted by university researchers and other federal and state agencies did not go through the formal USGS peer review and approval process, and therefore may not adhere to our editorial standards or stratigraphic nomenclature and is not research conducted or data collected by the USGS. However, all articles had at a minimum of two peer reviews, and all articles were edited for consistency of appearance in the published Proceedings. The use of trade, firm or product names in any article is for descriptive purposes only and does not imply endorsement by the U.S. Government. The USGS, Office of Groundwater, provides technical support for the Karst Interest Group website and public availability of the Proceedings from these workshops, and the USGS Groundwater Resources Program funds the publication costs. Finally, the cover illustration is the work of Ann Tihansky, USGS, used since the first KIG workshop in 2000.

Scientific Investigations Report↗

USGS2007

Rotational Seismology Workshop of February 2006

Introduction A successful workshop titled 'Measuring the Rotation Effects of Strong Ground Motion' was held simultaneously in Menlo Park and Pasadena via video conference on 16 February 2006. The purpose of the Workshop and this Report are to summarize existing data and theory and to explore future challenges for rotational seismology, including free-field strong motion, structural strong motion, and teleseismic motions. We also forged a consensus on the plan of work to be pursued by this international group in the near term. At this first workshop were 16 participants in Menlo Park, 13 in Pasadena, and a few on the telephone. It was organized by William H. K. Lee and John R. Evans and chaired by William U. Savage in Menlo Park and by Kenneth W. Hudnut in Pasadena. Its agenda is given in the Appendix. This workshop and efforts in Europe led to the creation of the International Working Group on Rotational Seismology (IWGoRS), an international volunteer group providing forums for exchange of ideas and data as well as hosting a series of Workshops and Special Sessions. IWGoRS created a Web site, backed by an FTP site, for distribution of materials related to rotational seismology. At present, the FTP site contains the 2006 Workshop agenda (also given in the Appendix below) and its PowerPoint presentations, as well as many papers (reasonable-only basis with permission of their authors), a comprehensive citations list, and related information. Eventually, the Web site will become the sole authoritative source for IWGoRS and shared information: http://www.rotational-seismology.org ftp://ehzftp.wr.usgs.gov/jrevans/IWGoRS_FTPsite/ With contributions from various authors during and after the 2006 Workshop, this Report proceeds from the theoretical bases for making rotational measurements (Graizer, Safak, Trifunac) through the available observations (Huang, Lee, Liu, Nigbor), proposed suites of measurements (Hudnut), a discussion of broadband teleseismic rotational seismology (Cochard, Igel, Schreiber, Teisseyre, Wassermann, Majewski), sensor-calibration issues (Evans, Hutt), and finally the summary and conclusions (Savage). As a direct result of the 2006 Workshop and the formation of IWGoRS, we held a special session at the Fall 2006 AGU meeting (convened by H. Igel, W.H.K. Lee, and M.I. Todorovska). Currently, the first formal Workshop of the IWGoRS is being organized by W.H.K. Lee, M. Celebi, and M. I. Todorovska with sponsorship by the USGS and assistance from many others; this First International Workshop on Rotational Seismology and Engineering Applications will be held in September 2007 at Menlo Park, California (http://pubs.usgs.gov/of/2007/1144/). The following summarizes presentations and discussions during and shortly after the informal Workshop of February 2006.

Open-File Report↗

USGS2008

Mercury concentrations in salmonids from western U.S. National Parks and relationships with age and macrophage aggregates

Mercury accumulation in aquatic foodwebs and its effects on aquatic biota are of growing concern both for the health of the fish and the piscivores that prey upon them. This is of particular concern for western U.S. National Parks because it is known that mountainous and Arctic areas are sinks for some contaminants. The Western Airborne Contaminants Assessment Project seeks, in part, to ascertain mercury concentrations and evaluate effects of contaminants on biota in 14 lakes from 8 National Parks or Preserves. In this paper we report that mercury has accumulated to concentrations in trout that may negatively impact some piscivorous wildlife, indicating potential terrestrial ecosystem effects. Additionally, we show that mercury concentrations increase with age in 4 species of trout, providing evidence of bioaccumulation. Finally, we demonstrate that mercury is associated with tissue damage in the kidney and spleen, as indicated by increases in macrophage aggregates. This finding suggests that mercury, and possibly other contaminants, are negatively affecting the trout that inhabit these remote and protected ecosystems. Our results indicate that mercury is indeed a concern for the U.S. National Parks, from an organismic and potentially an ecosystem perspective. ?? 2008 American Chemical Society.

Environmental Science & Technology↗

USGS1992

Transfer of computer software technology through workshops: The case of fish bioenergetics modeling

I recommend a three-part program to promote the availability and use of computer software packages to fishery managers and researchers. The three-part approach consists of journal articles that announce new technologies, technical reports that serve as user's guides, and hands-on workshops that provide direct instruction to new users. Workshops, which allow experienced users to directly instruct novices in software operation and application, are an important, but often neglected, final step in this process. My experience with organizing and conducting bioenergetics modeling workshops suggests the optimal workshop would take 2 days, have 10–15 participants, one computer for every two users, and one instructor for every 5–6 people.

Fisheries↗

USGS2019

Calibration analysis and noise estimates of WWSSN Station ALQ (Albuquerque, New Mexico)

World‐Wide Standardized Seismograph Network (WWSSN) records contain daily calibration pulses that can be used to retrieve the magnification as well as the response of the instrument for a given day record. We analyze a select number of long‐period vertical (LPZ) records from WWSSN station ALQ (Albuquerque, New Mexico). Although we find that the response of this instrument varies widely throughout time, we show that in most cases, we are able to estimate a pole‐zero response that has a root mean square error of < 10 % "> <10% ⁠ . The variability of responses in historical networks has been reported elsewhere because a large number of adjustments of the galvanometer and seismometer were necessary. Using our derived responses, we estimate noise levels for a number of 1 hr digitized traces. We find that noise levels for the LPZ ALQ records are lower than previously reported, suggesting that these records can resolve smaller amplitude signals than previously suggested. We also find that although care must be taken in the digitization and calibration analysis, we are not limited by noise introduced in the digitization process. Finally, we see that to retrieve the full secondary microseism amplitude, we must use both the LPZ and short‐period components because the LPZ component is limited by system noise at periods less than ∼ 5    s "> ∼5 s ⁠ .

New Mexico↗

USGS1996

The Fox River PCB transport study: Stepping stone to a healthy Great Lakes ecosystem

Polychlorinated Biphenyls (PCBs) in the Great Lakes Despite being banned since the 1970's, polychlorinated biphenyls (PCBs) continue to pose a threat to the environment because of their persistence and toxicity to organisms ranging from minute algae to fish, waterfowl, and human beings. PCBs, a set of 209 related chlorinated organic compounds, had various industrial uses such as in hydraulic fluids, cutting oils, sealants, and pesticides. Despite the manufacturing ban in the mid-1970's, PCBs remain ubiquitous in the environment. In the Laurentian Great Lakes of the Midwest. PCBs and other toxic compounds contaminate bottom sediments at almost all designated "areas of concern" (AOC)(figure 1, upper left inset). The International Joint Commission, a binational group from Canada and the United States, has identified these AOCs in their efforts to restore and protect Great Lakes ecosystems. One such area, the Fox River which flows into Green Bay, has been the focus of much scientific study in an effort to improve not only that river but to apply lessons learned to other AOCs. The final goal is a healthy Great Lakes food chain with fish and waterfowl that are safe to consume.

Fox River, Great Lakes, Lake Winnebago↗

USGS2002

Porphyry copper deposits of the world: Database, maps, and preliminary analysis

Mineral deposit models are important in exploration planning and quantitative resource assessments for two reasons: (1) grades and tonnages among deposit types are significantly different, and (2) many types occur in different geologic settings that can be identified from geologic maps. Mineral deposit models are the keystone in combining the diverse geoscience information on geology, mineral occurrences, geophysics, and geochemistry used in resource assessments and mineral exploration. Far too few thoroughly explored mineral deposits are available in most local areas for reliable identification of the important geoscience variables or for robust estimation of undiscovered deposits—thus we need mineral-deposit models. Globally based deposit models, such as those presented here, allow recognition of important features because the global models demonstrate how common different features are. Well-designed and -constructed deposit models allow geologists to know from observed geologic environments the possible mineral deposit types that might exist, and allow economists to determine the possible economic viability of these resources in the region. Thus, mineral deposit models play the central role in transforming geoscience information to a form useful to policy makers. The foundation of mineral deposit models is information about known deposits—the purpose of this publication is to make this kind of information available in digital form for a group of porphyry copper deposits. This publication contains a computer file of information on porphyry copper deposits around the world. It also presents new grade and tonnage models for three subtypes of porphyry copper deposits, maps showing locations and general ages of these deposits, and a preliminary analysis with a number of figures summarizing many of the properties of these porphyry-style deposits. These summaries can be considered a new, quantified, form of most parts of descriptive models such as those in Cox and Singer (1986). The value of this information and analyses depends critically on the consistent manner of data gathering. For this reason, we first discuss the rules used in this compilation. Next the fields of the data file are considered. Finally, we discuss some of the things that can be done with the data.

Open-File Report↗

USGS2026

Appendix 6: Overview of iPOM 2.0: Updates to wolf abundance estimation in Montana

Montana Fish, Wildlife and Parks (MFWP) uses the integrated Patch Occupancy Model (iPOM) to estimate statewide and regional wolf abundance. During the early years of recovery, wolf abundance was tracked using minimum counts. As the population increased, limitations of this method became apparent, motivating development of a model-based approach for estimating abundance. iPOM development began in 2006, was operationalized in 2013, and has been used in its current form (iPOM 1.0) since 2021. Since its inception, iPOM has been developed and presented as an adaptive modeling framework intended to evolve as new data and analytical methods become available1. Here, we briefly present ongoing work to produce the next iteration of iPOM, hereafter iPOM 2.0, and summarize major model updates and resulting preliminary wolf abundance estimates. iPOM uses models for occupancy, territory size, and pack size, along with monitoring data collected by MFWP wolf specialists and potential wolf sightings reported by deer and elk hunters during the 5-week general rifle season each Nov-Dec. These monitoring data, wolf sightings, and covariates for habitat and survey effort are used to model occupancy of packs on a statewide grid of 600-km 2 cells. The area used by wolves is then estimated as each cell’s occupancy estimate multiplied by grid cell area. iPOM estimates pack abundance by dividing this area by predicted territory sizes, and in-pack wolf abundance by multiplying pack abundance by estimated group size. This is combined with a lone wolf rate to estimate total wolf abundance (see Sells et al. 1 for a full description of iPOM 1.0). This technical summary provides a high-level overview of the proposed iPOM updates and their implications for wolf abundance estimates. The estimates presented here represent results as of June 2026 and are provided to inform upcoming discussions surrounding harvest management and regulations (e.g., season dates, quotas, methods). Results are preliminary and remain subject to final model refinement and peer review.

Montana↗

USGS2003

Interim Progress Report on the Application of an Independent Components Analysis-based Spectral Unmixing Algorithm to Beowulf Computers

This report describes work done to implement an independent-components-analysis (ICA) -based blind unmixing algorithm on the Eastern Region Geography (ERG) Beowulf computer cluster. It gives a brief description of blind spectral unmixing using ICA-based techniques and a preliminary example of unmixing results for Landsat-7 Thematic Mapper multispectral imagery using a recently reported1,2,3 unmixing algorithm. Also included are computer performance data. The final phase of this work, the actual implementation of the unmixing algorithm on the Beowulf cluster, was not completed this fiscal year and is addressed elsewhere. It is noted that study of this algorithm and its application to land-cover mapping will continue under another research project in the Land Remote Sensing theme into fiscal year 2004.

Open-File Report↗

USGS2011

Quantifying viruses and bacteria in wastewater—Results, interpretation methods, and quality control

Membrane bioreactors (MBR), used for wastewater treatment in Ohio and elsewhere in the United States, have pore sizes small enough to theoretically reduce concentrations of protozoa and bacteria, but not viruses. Sampling for viruses in wastewater is seldom done and not required. Instead, the bacterial indicators Escherichia coli (E. coli) and fecal coliforms are the required microbial measures of effluents for wastewater-discharge permits. Information is needed on the effectiveness of MBRs in removing human enteric viruses from wastewaters, particularly as compared to conventional wastewater treatment before and after disinfection. A total of 73 regular and 28 quality-control (QC) samples were collected at three MBR and two conventional wastewater plants in Ohio during 23 regular and 3 QC sampling trips in 2008-10. Samples were collected at various stages in the treatment processes and analyzed for bacterial indicators E. coli, fecal coliforms, and enterococci by membrane filtration; somatic and F-specific coliphage by the single agar layer (SAL) method; adenovirus, enterovirus, norovirus GI and GII, rotavirus, and hepatitis A virus by molecular methods; and viruses by cell culture. While addressing the main objective of the study-comparing removal of viruses and bacterial indicators in MBR and conventional plants-it was realized that work was needed to identify data analysis and quantification methods for interpreting enteric virus and QC data. Therefore, methods for quantifying viruses, qualifying results, and applying QC data to interpretations are described in this report. During each regular sampling trip, samples were collected (1) before conventional or MBR treatment (post-preliminary), (2) after secondary or MBR treatment (post-secondary or post-MBR), (3) after tertiary treatment (one conventional plant only), and (4) after disinfection (post-disinfection). Glass-wool fiber filtration was used to concentrate enteric viruses from large volumes, and small volume grab samples were collected for direct-plating analyses for bacterial indicators and coliphage. After filtration, the viruses were eluted from the filter and further concentrated. The final concentrated sample volume (FCSV) was used for enteric virus analysis by use of two methods-cell culture and a molecular method, polymerase chain reaction (PCR). Quantitative PCR (qPCR) for DNA viruses and quantitative reverse-transcriptase PCR (qRT-PCR) for RNA viruses were used in this study. To support data interpretations, the assay limit of detection (ALOD) was set for each virus assay and used to determine sample reporting limits (SRLs). For qPCR and qRT-PCR the ALOD was an estimated value because it was not established according to established method detection limit procedures. The SRLs were different for each sample because effective sample volumes (the volume of the original sample that was actually used in each analysis) were different for each sample. Effective sample volumes were much less than the original sample volumes because of reductions from processing steps and (or) from when dilutions were made to minimize the effects from PCR-inhibiting substances. Codes were used to further qualify the virus data and indicate the level of uncertainty associated with each measurement. Quality-control samples were used to support data interpretations. Field and laboratory blanks for bacteria, coliphage, and enteric viruses were all below detection, indicating that it was unlikely that samples were contaminated from equipment or processing procedures. The absolute value log differences (AVLDs) between concurrent replicate pairs were calculated to identify the variability associated with each measurement. For bacterial indicators and coliphage, the AVLD results indicated that concentrations <10 colony-forming units or plaque-forming units per 100 mL can differ between replicates by as much as 1 log, whereas higher concentrations can differ by as much as 0.3 log. The AVLD results for viruses indicated that differences between replicates can be as great as 1.2 log genomic copies per liter, regardless of the concentration of virus. Relatively large differences in molecular results for viruses between replicate pairs were likely due to lack of precision for samples with small effective volumes. Concentrations of E. coli, fecal coliforms, enterococci, and somatic and F-specific coliphage in post-secondary and post-tertiary samples in conventional plants were higher than those in post-MBR samples. In post-MBR and post-secondary samples, concentrations of somatic coliphage were higher than F-specific coliphage. In post-disinfection samples from two MBR plants (the third MBR plant had operational issues) and the ultraviolet conventional plant, concentrations for all bacterial indicators and coliphage were near or below detection; from the chlorine conventional plant, concentrations in post-disinfection samples were in the single or double digits. All of the plants met the National Pollutant Discharge Elimination System required effluent limits established for fecal coliforms. Norovirus GII and hepatitis A virus were not detected in any samples, and rotavirus was detected in one sample but could not be quantified. Adenovirus was found in 100 percent, enterovirus in over one-half, and norovirus GI in about one-half of post-preliminary wastewater samples. Adenovirus and enterovirus were detected throughout the treatment processes, and norovirus GI was detected less often than the other two enteric viruses. Culturable viruses were detected in post-preliminary samples and in only two post-treatment samples from the plant with operational issues.

Scientific Investigations Report↗

USGS2006

Concepts and procedures required for successful reduction of tensor magnetic gradiometer data obtained from an unexploded ordnance detection demonstration at Yuma Proving Grounds, Arizona

On March 12, 2003, data were gathered at Yuma Proving Grounds, in Arizona, using a Tensor Magnetic Gradiometer System (TMGS). This report shows how these data were processed and explains concepts required for successful TMGS data reduction. Important concepts discussed include extreme attitudinal sensitivity of vector measurements, low attitudinal sensitivity of gradient measurements, leakage of the common-mode field into gradient measurements, consequences of thermal drift, and effects of field curvature. Spatial-data collection procedures and a spin-calibration method are addressed. Discussions of data-reduction procedures include tracking of axial data by mathematically matching transfer functions among the axes, derivation and application of calibration coefficients, calculation of sensor-pair gradients, thermal-drift corrections, and gradient collocation. For presentation, the magnetic tensor at each data station is converted to a scalar quantity, the I2 tensor invariant, which is easily found by calculating the determinant of the tensor. At important processing junctures, the determinants for all stations in the mapped area are shown in shaded relief map-view. Final processed results are compared to a mathematical model to show the validity of the assumptions made during processing and the reasonableness of the ultimate answer obtained.

Open-File Report↗

USGS2010

Petrology and geochemistry of the 2006 eruption of Augustine Volcano

Deposits from the 2006 eruption of Augustine Volcano, Alaska, record a complex history of magma mixing before and during the eruption. The eruption produced five major lithologies: low-silica andesite scoria (LSAS; 56.5 to 58.7 weight percent SiO 2 ), mostly during the initial explosive phase; high-silica andesite pumice (HSA; 62.2 to 63.3 weight percent SiO 2 ), prevalent during the continuous phase; dense low-silica andesite (DLSA; 56.4 to 59.3 weight percent SiO 2 ), predominantly during the late effusive phase; and dense intermediate andesite (DIA) and banded clasts, present throughout the eruption but most abundant in the continuous phase. The DIA and banded clasts have compositions that fall between and partially overlap the ranges noted above. All rock types are phenocryst-rich (36 to 44 volume percent), containing plagioclase, orthopyroxene, augite, Fe-Ti oxides, olivine, and rare amphibole, apatite, and anhydrite. Glasses from tephra and flow-deposit clasts range from 66 to nearly 80 weight percent SiO 2 and represent highly evolved melt relative to the bulk rock compositions. Fe-Ti oxides recorded f O2 ~2 log units above the Ni-NiO buffer and temperatures of 904±47°C and 838±14°C from LSAS and HSA samples, respectively, with the intermediate lithologies falling in the middle of these ranges. The dense low-silica andesite and scoria (collectively LSA) are compositionally nearly identical, and trace-element patterns show that the HSA is not the result of shallow crustal fractionation of the LSA. The petrological and geochemical data indicate that two-component magma mixing between the LSA and HSA caused the compositional spread in eruptive products. The phenocryst population in the LSA suggests that it represents a hybrid formed from the HSA and an unerupted, basaltic “replenishing” magma. On the basis of petrological and geophysical observations reported here and elsewhere in this volume, the HSA was stored as a crystal-rich mush with its top at ~5-km depth. An influx of basalt remobilized and partially mixed with a portion of the mush, forming the hybrid LSA. The lower viscosity LSA ascended towards the surface as a dike, erupting during the explosive phase in mid-January 2006. In late January, a large explosion produced the first significant volumes of HSA, followed by several days of rapid HSA effusion during the eruption’s continuous phase. After a three-week hiatus marked by elevated gas output, signifying an open system, degassed LSA erupted during the final, effusive phase. Consistency in eruptive styles and compositions suggests that the HSA magma body may have been similarly rejuvenated during the past several eruptions.

Alaska↗

USGS1986

A model for the plastic flow of landslides

To further the understanding of the mechanics of landslide flow, we present a model that predicts many of the observed attributes of landslides. The model is based on an integration of the hyperbolic differential equations for stress and velocity fields in a two-dimensional, inclined, semi-infinite half-space of Coulomb plastic material under elevated pore pressure and gravity. Our landslide model predicts commonly observed features. For example, compressive (passive), plug, or extending (active) flow will occur under appropriate longitudinal strain rates. Also, the model predicts that longitudinal stresses increase elliptically with depth to the basal slide plane, and that stress and velocity characteristics, surfaces along which discontinuities in stress and velocity are propagated, are coincident. Finally, the model shows how thrust and normal faults develop at the landslide surface in compressive and extending flow.

Professional Paper↗

USGS2004

Geochemistry and Geochronology of Middle Tertiary Volcanic Rocks of the Central Chiricahua Mountains, Southeast Arizona

Middle Tertiary volcanic rocks of the central Chiricahua Mountains in southeast Arizona are the westernmost constituents of the Eocene-Oligocene Boot Heel volcanic field of southwestern New Mexico and southeastern Arizona. About two dozen volumetric ally and stratigraphically significant volcanic units are present in this area. These include large-volume, regionally distributed ash-flow tuffs and smaller volume, locally distributed lava flows. The most voluminous of these units is the Rhyolite Canyon Tuff, which erupted 26.9 million years ago from the Turkey Creek caldera in the central Chiricahua Mountains. The Rhyolite Canyon Tuff consists of 500-1,000 cubic kilometers of rhyolite that was erupted from a normally zoned reservoir. The tuff represents sequential eruptions, which became systematically less geochemically evolved with time, from progressively deeper levels of the source reservoir. Like the Rhyolite Canyon Tuff, other ashflow tuffs preserved in the central Chiricahua Mountains have equivalents in nearby, though isolated mountain ranges. However, correlation of these other tuffs, from range to range, has been hindered by stratigraphic discontinuity, structural complexity, and various lithologic similarities and ambiguities. New geochemical and geochronologic data presented here enable correlation of these units between their occurrences in the central Chiricahua Mountains and the remainder of the Boot Heel volcanic field. Volcanic rocks in the central Chiricahua Mountains are composed dominantly of weakly peraluminous, high-silica rhyolite welded tuff and rhyolite lavas of the high-potassium and shoshonitic series. Trace-element, and to a lesser extent, major-oxide abundances are distinct for most of the units studied. Geochemical and geochronologic data depict a time and spatial transgression from subduction to within-plate and extensional tectonic settings. Compositions of the lavas tend to be relatively homogeneous within particular units. In contrast, compositions of the ash-flow tuffs, including the Rhyolite Canyon Tuff, vary significantly owing to eruption from compositionally zoned reservoirs. Reservoir zonation is consistent with fractional crystallization of observed phenocryst phases and resulting residual liquid compositional evolution. Rhyolite lavas preserved in the moat of the Turkey Creek caldera depict compositional zonation that is the reverse of that expected of magma extraction from progressively deeper parts of a normally zoned reservoir. Presuming that the source reservoir was sequentially tapped from its top downward, development of reverse zonation in the rhyolite lava sequence may indicate that later erupted, more evolved magma contains systematically less wallrock contamination derived from the geochemically primitive margins of its incompletely mixed reservoir. New 40Ar/39Ar geochronology data indicate that the principal middle Tertiary volcanic rocks in the central Chiricahua Mountains were erupted between about 34.2 and 26.2 Ma, and that the 5.2 m.y. period between 33.3 and 28.1 Ma was amagmatic. The initial phase of eruptive activity in the central Chiricahua Mountains, between 34.2 and 33.3 Ma, was associated with a regional tectonic regime dominated by subduction along the west edge of North America. We infer that the magmatic hiatus, nearly simultaneous with a hiatus of similar duration in parts of the Boot Heel volcanic field east of the central Chiricahua Mountains, is related to a period of more rapid convergence and therefore shallower subduction that may have displaced subduction-related magmatic activity to a position east of the present-day Boot Heel volcanic field. The hiatus also coincides with a major plate tectonic reorganization along the west edge of North America that resulted in cessation of subduction and initiation of transform faulting along the San Andreas fault. The final period of magmatism in the central Chiricahua Mountains, between 28.1 and 23.2 Ma, ap

Professional Paper↗