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USGS2017

Studies of wolf x coyote hybridization via artificial insemination

Following the production of western gray wolf ( Canis lupus ) x western coyote ( Canis latrans ) hybrids via artificial insemination (AI), the present article documents that the hybrids survived in captivity for at least 4 years and successfully bred with each other. It further reports that backcrossing one of the hybrids to a male gray wolf by AI also resulted in the birth of live pups that have survived for at least 10 months. All male hybrids (F 1 and F 2 ) produced sperm by about 10 months of age, and sperm quality of the F 1 males fell within the fertile range for domestic dogs, but sperm motility and morphology, in particular, were low in F 2 males at 10 months but improved in samples taken at 22 months of age. These studies are relevant to a long-standing controversy about the identity of the red wolf ( Canis rufus ), the existence of a proposed new species ( Canis lycaon ) of gray wolf, and to the role of hybridization in mammalian evolution.

PLoS ONE↗

USGS2018

AMModels: An R package for storing models, data, and metadata to facilitate adaptive management

Agencies are increasingly called upon to implement their natural resource management programs within an adaptive management (AM) framework. This article provides the background and motivation for the R package, AMModels . AMModels was developed under R version 3.2.2. The overall goal of AMModels is simple: To codify knowledge in the form of models and to store it, along with models generated from numerous analyses and datasets that may come our way, so that it can be used or recalled in the future. AMModels facilitates this process by storing all models and datasets in a single object that can be saved to an .RData file and routinely augmented to track changes in knowledge through time. Through this process, AMModels allows the capture, development, sharing, and use of knowledge that may help organizations achieve their mission. While AMModels was designed to facilitate adaptive management, its utility is far more general. Many R packages exist for creating and summarizing models, but to our knowledge, AMModels is the only package dedicated not to the mechanics of analysis but to organizing analysis inputs, analysis outputs, and preserving descriptive metadata. We anticipate that this package will assist users hoping to preserve the key elements of an analysis so they may be more confidently revisited at a later date.

PLoS ONE↗

USGS2018

Dynamic minimum set problem for reserve design: Heuristic solutions for large problems

Conversion of wild habitats to human dominated landscape is a major cause of biodiversity loss. An approach to mitigate the impact of habitat loss consists of designating reserves where habitat is preserved and managed. Determining the most valuable areas to preserve in a landscape is called the reserve design problem. There exists several possible formulations of the reserve design problem, depending on the objectives and the constraints. In this article, we considered the dynamic problem of designing a reserve that contains a desired area of several key habitats. The dynamic case implies that the reserve cannot be designed in one time step, due to budget constraints, and that habitats can be lost before they are reserved, due for example to climate change or human development. We proposed two heuristics strategies that can be used to select sites to reserve each year for large reserve design problem. The first heuristic is a combination of the Marxan and site-ordering algorithms and the second heuristic is an augmented version of the common naive myopic heuristic. We evaluated the strategies on several simulated examples and showed that the augmented greedy heuristic is particularly interesting when some of the habitats to protect are particularly threatened and/or the compactness of the network is accounted for.

PLoS ONE↗

USGS2025

Exploring the science and data foundation for Federal public lands decisions

Public lands provide diverse resources, values, and services worldwide. Laws and policies typically require consideration of science in public lands decisions, and resource managers are committed to science-informed decision-making. However, it can be challenging for managers to use, and document the use of, science and data in their decisions. To better understand science and data use in Federal public lands decisions in the United States, we assessed the number, type, and age of documents cited in 70 Environmental Assessments (EAs) completed by the Bureau of Land Management (BLM) in Colorado from 2015–2019. We focused on the BLM, as they manage the largest area of public lands in the United States. We selected Colorado as our study area, as actions proposed on BLM lands in Colorado are representative of those across the nation. Fifty percent of citations were categorized as science and 23% as data. EAs contained an average of 17 citations (range 0–111), with documents analyzing effects of oil and gas development and recreation actions including the highest and lowest mean number of citations (41 and 6, respectively). Of individual resource analysis sections within EAs, 24% contained ≥1 science citation and 21% contained ≥1 data citation. Journal articles were the most cited type of document (26% of citations) followed by non-BLM inventories (13%). Forty-seven percent of citations were relatively recent (2010 or later); the oldest citation was from 1927. Commonly analyzed resources with the highest mean number of citations were socioeconomics, mineral resources, and noise. Fourteen of 33 commonly analyzed resources included <1 citation on average. Actions and resources with no or few citations represent opportunities for strengthening the transparent use of science and data in public lands decision-making.

Colorado↗

USGS2021

Hyperspectral narrowband data propel gigantic leap in the earth remote sensing

Hyperspectral narrowbands (HNBs) capture data as nearly continuous “spectral signatures” rather than a “few spectral data points” along the electromagnetic spectrum as with multispectral broadbands (MBBs). Almost all of satellite remote sensing of the Earth in the twentieth century was conducted using MBB data from sensors such as the Landsat-series, Advanced Very High-Resolution Radiometer (AVHRR), SPOT (Système Pour l’Observation de la Terre), and the Indian Remote Sensing (IRS) satellites. These systems typically provide 4 to 9 broad spectral wavebands spread from 400 to 2500 nm, often with one or two additional bands in the thermal range. Significant advances in the study of the Earth have been made based on these data [Thenkabail et al., 2018a,b,c,d; Thenkabail et al., 2015a,b,c]. Possibilities of great advances that can be made using HNB data over MBB data are well established based on studies conducted using hyperspectral sensors such as the hand-held spectroradiometers, the Airborne Visible/Infrared Imaging Spectrometer (AVIRIS), and spaceborne Earth Observing -1 (EO-1) Hyperion [Thenkabail 2018a,b,c,d]. The twenty-first century is already seeing the dawn of hyperspectral imaging data from sensors such as the German Aerospace Center’s (DLR’s) DESIS (DLR Earth Sensing Imaging Spectrometer) onboard the MUSES (Multi-User System for Earth Sensing) platform on the International Space Station (ISS), the polar-orbiting Italian Space Agency’s (ASI) PRISMA (PRecursore IperSpettrale della Missione Applicativa), and many other upcoming sensors such as the NASA Surface Biology and Geology (SBG) [Thenkabail et al., 2018a,b,c,d]. These satellites acquire data in hundreds of narrow spectral bands of 1 to 10 nm width, typically between 400 to 2500 nm; also future planned missions will be extending HNBs to the thermal (9,000 to 14,000 nm) electromagnetic spectrum. This expansion creates a quantum leap in new data, new information, and myriad possible new applications in the study of the Earth in addition to great advances in existing applications. Given the above, the objective of this article is to provide insights on the gigantic leap in our understanding, modeling, mapping, and monitoring of the Earth that can be made using HNB relative to MBB by focusing on agricultural and vegetation applications. We will address this in four aspects: 1. Comparison between HNB and MBB data; 2. Spectral libraries of agricultural crops; 3. HNB data analysis in general; and 4. HNB analysis using machine learning (ML) and cloud computing.

Photogrammetric Engineering and Remote Sensing.↗

USGS2022

Newly documented behavior of free-ranging Arctic wolf pups

Whereas much is known about the behavior and development of captive young wolf ( Canis lupus ) pups, less detail has been published about some aspects of free-ranging wolf pup behavior. This article synthesizes 42 observations of free-ranging Arctic wolf pups from ages 13 through 52 days made during 10 summers from 1987 through 2006 on Ellesmere Island, Nunavut, Canada. Besides listing key behaviors such as howling and caching, I record unique observations of ages of pup urination without adult stimulation (22, 33, 42, 52 days), knowledge of which is important to studies of wolf domestication, and of a 48-day-old pup that traveled 39 km during a 12 h and 19 min round trip between the den and a prey carcass, including a 26.5 km trek in 5 h. These observations should lead to a deeper and more complete understanding of this critical period of pup growth and development.

Nunavut↗

USGS2023

Reference materials for phase equilibrium studies. 2. Solid–liquid equilibria (IUPAC Technical Report)

This article is the second of three projected IUPAC Technical Reports on reference materials for phase equilibrium studies. The goal of this project was to select reference systems with critically evaluated property values for the verification of instruments and techniques used in phase equilibrium studies of mixtures. This report proposes seven systems for solid–liquid equilibrium studies, covering the four most common categories of binary mixtures: aqueous systems with organic solutes, aqueous systems with inorganic solutes, non-aqueous systems, and systems with low solubility. For each system, the available literature sources, accepted data, smoothing equations, and estimated uncertainties are given.

Pure and Applied Chemistry↗

USGS2009

Toward immunogenetic studies of amphibian chytridiomycosis: Linking innate and acquired immunity

Recent declines in amphibian diversity and abundance have contributed significantly to the global loss of biodiversity. The fungal disease chytridiomycosis is widely considered to be a primary cause of these declines, yet the critical question of why amphibian species differ in susceptibility remains unanswered. Considerable evidence links environmental conditions and interspecific variability of the innate immune system to differential infection responses, but other sources of individual, population, or species-typical variation may also be important. In this article we review the preliminary evidence supporting a role for acquired immune defenses against chytridiomycosis, and advocate for targeted investigation of genes controlling acquired responses, as well as those that functionally bridge the innate and acquired immune systems. Immunogenetic data promise to answer key questions about chytridiomycosis susceptibility and host-pathogen coevolution, and will draw much needed attention to the importance of considering evolutionary processes in amphibian conservation management and practice. ?? 2009 by American Institute of Biological Sciences.

BioScience↗

USGS2009

An incomplete analysis

Niles and colleagues (2009) do not present all of the data relevant to the issues they address in the article they wrote for BioScience. They reference unnamed sources for pre-1997 horseshoe crab harvest to conclude that recent harvest exceeds historic harvest. In fact, reported landings from New Jersey, Delaware, Maryland, and Virginia in 2006 (352 metric tons [mt]) were between landings in 1989 (365 mt) and 1990 (232 mt) (www.st.nmfs.noaa.gov/st1/commercial/inaex.html), despite nonmandatory reporting coastwide before 1998 (Kreamer and Michels 2009). They present egg densities from New Jersey beaches only. Of the 11 Delaware beaches sampled, eggs in the top 5 centimeters exceeded their monitoring target of 50,000 per square meter at 5 in 2006 and at 6 in 2007 (Kalasz et al. 2008). They rely on the Delaware trawl survey for historic trends. Nine fishery-independent surveys have been used to assess trends in the Delaware Bay region, and several began before 1990 (Smith et al. 2009a).

BioScience↗

USGS2011

Perceptions of strengths and deficiencies: Disconnects between graduate students and prospective employers

The US Botanical Capacity Assessment Project (BCAP) was initiated as a first step to gauge the nation's collective ability to meet the environmental challenges of the 21st century. The project, in which the authors of this article are involved, specifically aimed to identify multisector contributions to and gaps in botanical capacity in order to develop growth opportunities to address research and management problems. One of the primary gaps revealed by the BCAP surveys was that the skills graduate students identified as their greatest strengths closely matched the areas future employers (government and private sectors) identified as needing greatest improvement. Although our survey focused on only one discipline (botany), we suspect that the results are applicable throughout the science, technology, engineering, and mathematics disciplines. We suggest that it is critical for university faculty and administrators to team with professionals from government, nonprofit, and for-profit organizations to identify critical and desired knowledge and skill sets and implement the necessary curriculum changes to provide graduates with the tools they need.

BioScience↗

USGS2012

Extinction rates in North American freshwater fishes, 1900-2010

Widespread evidence shows that the modern rates of extinction in many plants and animals exceed background rates in the fossil record. In the present article, I investigate this issue with regard to North American freshwater fishes. From 1898 to 2006, 57 taxa became extinct, and three distinct populations were extirpated from the continent. Since 1989, the numbers of extinct North American fishes have increased by 25%. From the end of the nineteenth century to the present, modern extinctions varied by decade but significantly increased after 1950 (post-1950s mean = 7.5 extinct taxa per decade). In the twentieth century, freshwater fishes had the highest extinction rate worldwide among vertebrates. The modern extinction rate for North American freshwater fishes is conservatively estimated to be 877 times greater than the background extinction rate for freshwater fishes (one extinction every 3 million years). Reasonable estimates project that future increases in extinctions will range from 53 to 86 species by 2050.

BioScience↗

USGS2003

An introduction to the San Francisco Estuary tidal wetlands restoration series

Restoration of tidal wetlands may provide an important tool for improving ecological health and water management for beneficial uses of the San Francisco Estuary (hereafter “Estuary”). Given the large losses of tidal wetlands from San Francisco Bay and the Sacramento-San Joaquin Delta in the last 150 years, it seems logical to assume that restoring tidal wetlands will have benefits for a variety of aquatic and terrestrial native species that have declined during the same time period. However, many other changes have also occurred in the Estuary concurrent with the declines of native species. Other factors that might be important in species declines include the effects of construction of upstream dams, large and small water diversions within the Sacramento-San Joaquin Delta, agricultural pesticides, trace elements from industrial and agricultural activities, and invasions of alien species. Discussions among researchers, managers, and stakeholders have identified a number of uncertainties regarding the potential benefits of tidal wetland restoration. The articles of the Tidal Wetlands Restoration Series address four major issues of concern. Stated as questions, these are: 1. Will tidal wetland restoration enhance populations of native fishes? 2. Will wetland restoration increase rates of methylation of mercury? 3. Will primary production and other ecological processes in restored tidal wetlands result in net export of organic carbon to adjacent habitats, resulting in enhancement of the food web? Will the carbon produced contribute to the formation of disinfection byproducts when disinfected for use as drinking water? 4. Will restored tidal wetlands provide long-term ecosystem benefits that can be sustained in response to ongoing physical processes, including sedimentation and hydrodynamics? Reducing the uncertainty surrounding these issues is of critical importance because tidal wetland restoration is assumed to be a critical tool for enhancement of native species and ecosystem processes in the Estuary.

California↗

USGS2015

Sturgeon in the Sacramento-San Joaquin watershed: new insights to support conservation and management

The goal of a day-long symposium on March 3, 2015, Sturgeon in the Sacramento–San Joaquin Watershed: New Insights to Support Conservation and Management, was to present new information about the physiology, behavior, and ecology of the green (Acipenser medirostris) and white sturgeon (Acipenser transmontanus) to help guide enhanced management and conservation efforts within the Sacramento–San Joaquin watershed. This symposium identified current unknowns and highlighted new electronic tracking technologies and physiological techniques to address these knowledge gaps. A number of presentations, each reviewing ongoing research on the two species, was followed by a round-table discussion, in which each of the participants was asked to share recom-mendations for future research on sturgeon in the watershed. This article presents an in-depth review of the scientific information presented at the sympo-sium with a summary of recommendations for future research.

California↗

USGS2003

The U.S. Geological Survey land remote sensing program

The U.S. Geological Survey has been a provider of remotely sensed information for decades. As the availability and use of satellite data has grown, USGS has placed increasing emphasis on expanding the knowledge about the science of remote sensing and on making remotely sensed data more accessible. USGS encourages widespread availability and distribution of these data and through its programs, encourages and enables a variety of research activities and the development of useful applications of the data. The science of remote sensing has great potential for assisting in the monitoring and assessment of the impacts of natural disasters, management and analysis of environmental, biological, energy, and mineral investigations, and supporting informed public policy decisions. By establishing the Land Remote Sensing Program (LRS) as a major unit of the USGS Geography Program, USGS has taken the next step to further increase support for the accessibility, understanding, and use of remotely sensed data. This article describes the LRS Program, its mission and objectives, and how the program has been structured to accomplish its goals.

Cartography and Geographic Information Science↗

USGS2013

Map design and production issues for the Utah Gap Analysis Project

The cartographic preparation and printing of four maps for the Utah GAP Project presented a wide range of challenges in cartographic design and production. In meeting these challenges, the map designers had to balance the purpose of the maps together with their legibility and utility against both the researchers' desire to show as much detail as possible and the technical limitations inherent in the printing process. This article describes seven design and production issues in order to illustrate the challenges of making maps from a merger of satellite data and GIS databases, and to point toward future investigation and development.

Utah↗

USGS1989

Comprehensive technologies and decision-making: Reflections on the instream flow incremental methodology

The controversy surrounding the Instream Flow Incremental Methodology is briefly discussed. A 1968 article by James Schlesinger on the likely success of systems analysis in aiding decision-makers is used to illustrate some pitfalls involving comprehensive technologies. The lessons of systems analysis are drawn together with the literature on instream flow methods to illustrate that there is no one best way to perform an instream flow analysis. It is argued that technology should be employed only with an extensive knowledge of assumptions and purposes.

Fisheries↗

USGS1992

Transfer of computer software technology through workshops: The case of fish bioenergetics modeling

I recommend a three-part program to promote the availability and use of computer software packages to fishery managers and researchers. The three-part approach consists of journal articles that announce new technologies, technical reports that serve as user's guides, and hands-on workshops that provide direct instruction to new users. Workshops, which allow experienced users to directly instruct novices in software operation and application, are an important, but often neglected, final step in this process. My experience with organizing and conducting bioenergetics modeling workshops suggests the optimal workshop would take 2 days, have 10–15 participants, one computer for every two users, and one instructor for every 5–6 people.

Fisheries↗

USGS2005

Predatory fish removal and native fish recovery in the Colorado River mainstem: What have we learned?

Mechanical predator removal programs have gained popularity in the United States and have benefited the recovery of several native trout and spring fish. These successes have been limited to headwater streams and small, isolated ponds or springs. Nevertheless, these same approaches are being applied to large river systems on the belief that any degree of predator removal will somehow benefit natives. This attitude is prevalent in the Colorado River mainstem where recovery and conservation programs are struggling to reverse the decline of four endangered fish species. Predator removal and prevention are major thrusts of that work but unfortunately, after 10 years and the removal of >1.5 million predators, we have yet to see a positive response from the native fish community. This leads to the obvious question: is mechanical removal or control in large (>100 cfs base flow) western streams technically or politically feasible? If not, recovery for some mainstem fishes may not be practical in the conventional sense, but require innovative management strategies to prevent their extirpation or possible extinction. This article examines (1) what has been attempted, (2) what has worked, and (3) what has not worked in the Colorado River mainstem and provides recommendations for future efforts in this critical management area.

Fisheries↗