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At least 775 records · Page 43Linked to original sources
USGS2006

A global perspective on the use, sales, exposure pathways, occurrence, fate and effects of veterinary antibiotics (VAs) in the environment

Veterinary antibiotics (VAs) are widely used in many countries worldwide to treat disease and protect the health of animals. They are also incorporated into animal feed to improve growth rate and feed efficiency. As antibiotics are poorly adsorbed in the gut of the animals, the majority is excreted unchanged in faeces and urine. Given that land application of animal waste as a supplement to fertilizer is often a common practice in many countries, there is a growing international concern about the potential impact of antibiotic residues on the environment. Frequent use of antibiotics has also raised concerns about increased antibiotic resistance of microorganisms. We have attempted in this paper to summarize the latest information available in the literature on the use, sales, exposure pathways, environmental occurrence, fate and effects of veterinary antibiotics in animal agriculture. The review has focused on four important groups of antibiotics (tylosin, tetracycline, sulfonamides and, to a lesser extent, bacitracin) giving a background on their chemical nature, fate processes, occurrence, and effects on plants, soil organisms and bacterial community. Recognising the importance and the growing debate, the issue of antibiotic resistance due to the frequent use of antibiotics in food-producing animals is also briefly covered. The final section highlights some unresolved questions and presents a way forward on issues requiring urgent attention.

Chemosphere↗
USGS2020

History and evolution of seepage meters for quantifying flow between groundwater and surface water: Part 1 – Freshwater settings

More than 75 years after its introduction, the seepage meter remains the only device for directly quantifying exchange across the sediment-water interface between groundwater and surface water. This device, first presented in the literature in the 1940s, has been in a state of near-constant improvement and design change, necessitating a review of the history and evolution of the device and a description of current best-measurement practices. Part 1 of this two-part review documents the evolution of seepage meters deployed in freshwater settings, including a listing of suggestions for best-measurement and deployment practices. Part 2 covers the same scope for seepage meters deployed in marine settings. Traditional seepage meters isolate a portion of the sediment bed; seepage commonly is determined by routing the volume of flow across that isolated interface to or from a submerged measurement bag over a known time interval. The time-integrated volume is then divided by the bed area covered by the meter to obtain a seepage flux expressed in distance per time. Both the instrument and the measurement are deceptively simple, leading some early users to question the viability of the measurement. Numerous sources of error have been identified and addressed over the decades, resulting in large improvements in measurement consistency and accuracy. Duration of each measurement depends on the seepage rate and can vary from minutes to days, leading to the erroneous and yet common assumption that seepage is relatively stable over time. Designs that replace the measurement bag with a flowmeter eliminate bag-related errors and provide much finer temporal resolution. Resulting data indicate seepage is highly variable in many settings and responds to numerous sub-daily processes, including evapotranspiration, rainfall, seiches and waves. Combining direct measurements from seepage meters with other measurements, such as vertical hydraulic gradients and vertical temperature profiles, provides far better understanding of the processes that control exchange between groundwater and surface water.

Earth-Science Reviews↗
USGS2008

Environmental drivers in mangrove establishment and early development: A review

Mangroves have a global distribution within coastal tropical and subtropical climates, and have even expanded to some temperate locales. Where they do occur, mangroves provide a plethora of goods and services, ranging from coastal protection from storms and erosion to direct income for human societies. The mangrove literature has become rather voluminous, prompting many subdisciplines within a field that earlier in the 20th century received little focus. Much of this research has become diffuse by sheer numbers, requiring detailed syntheses to make research results widely available to resource managers. In this review, we take an inclusive approach in focusing on eco-physiological and growth constraints to the establishment and early development of mangrove seedlings in the intertidal zone. This is a critical life stage for mangroves, i.e., the period between dispersal and recruitment to the sapling stage. We begin with some of the research that has set the precedent for seedling-level eco-physiological research in mangroves, and then we focus on recent advances (circa. 1995 to present) in our understanding of temperature, carbon dioxide, salinity, light, nutrient, flooding, and specific biotic influences on seedling survival and growth. As such, we take a new approach in describing seedling response to global factors (e.g., temperature) along with site-specific factors (e.g., salinity). All variables will strongly influence the future of seedling dynamics in ways perhaps not yet documented in mature forests. Furthermore, understanding how different mangrove species can respond to global factors and regional influences is useful for diagnosing observed mortality within mangrove wetlands, managed or natural. This review provides an updated eco-physiological knowledge base for future research and reforestation activity, and for understanding important links among climate change, local physico-chemical condition, and establishment and early growth of mangrove seedlings.

Aquatic Botany↗
USGS1994

New records of Ergasilus (Copepoda: Ergasilidae) in the Laurentian Great Lakes, including a lakewide review of records and host associations

Ergasilus nerkae was found infecting ninespine stickleback (Pungitius pungitius) in lakes Huron, Michigan, and Superior and threespine stickleback (Gasterosteus aculeatus) and round whitefish (Prosopium cylindraceum) in Lake Huron. Based upon the literature and study of archived material, we propose that E. nerkae is enzootic to the Great Lakes and that ninespine stickleback are a preferred host in Lake Huron. Prevalence of E. nerkae on ninespine stickleback increased from 17% in June to 68% in September, but mean intensity remained light. Prevalence and mean intensity increased with host length. Ergasilus luciopercarum is also reported on lake trout (Salvelinus namaycush) and largemouth bass (Micropterus salmoides) for the first time. Host-parasite records of Ergasilus spp. in North America are reviewed, biology and taxonomy are summarized, and a checklist of Great Lakes host-parasite-locality records is provided. At present, eight species of Ergasilus are known to infect 42 Great Lakes fish species.

Canadian Journal of Zoology↗
USGS2018

Size, growth, and density data for shallow-water sea urchins from Mexico to the Aleutian Islands, Alaska, 1956–2016

Size, growth, and density have been studied for North American Pacific coast sea urchins Strongylocentrotus purpuratus , S. droebachiensis, S. polyacanthus , Mesocentrotus (Strongylocentrotus) franciscanus , Lytechinus pictus , Centrostephanus coronatus , and Arbacia stellata by various workers at diverse sites and for varying lengths of time from 1956 to present. Numerous peer-reviewed publications have used some of these data but some data have appeared only in graduate theses or the gray literature. There also are data that have never appeared outside original data sheets. Motivation for studies has included fisheries management and environmental monitoring of sewer and power plant outfalls as well as changes associated with disease epidemics. Studies also have focused on kelp restoration, community effects of sea otters, basic sea urchin biology, and monitoring. The data sets presented here are a historical record of size, density, and growth for a common group of marine invertebrates in intertidal and nearshore environments that can be used to test hypotheses concerning future changes associated with fisheries practices, shifts of predator distributions, climate and ecosystem changes, and ocean acidification along the Pacific Coast of North America and islands of the north Pacific.

Pacific Coast↗
USGS2018

Regeneration of Salicaceae riparian forests in the Northern Hemisphere: A new framework and management tool

Human activities on floodplains have severely disrupted the regeneration of foundation riparian shrub and tree species of the Salicaceae family ( Populus and Salix spp.) throughout the Northern Hemisphere. Restoration ecologists initially tackled this problem from a terrestrial perspective that emphasized planting. More recently, floodplain restoration activities have embraced an aquatic perspective, inspired by the expanding practice of managing river flows to improve river health (environmental flows) . However, riparian Salicaceae species occupy floodplain and riparian areas, which lie at the interface of both terrestrial and aquatic ecosystems along watercourses . Thus, their regeneration depends on a complex interaction of hydrologic and geomorphic processes that have shaped key life-cycle requirements for seedling establishment . Ultimately, restoration needs to integrate these concepts to succeed. However, while regeneration of Salicaceae is now reasonably well-understood, the literature reporting restoration actions on Salicaceae regeneration is sparse, and a specific theoretical framework is still missing. Here, we have reviewed 105 peer-reviewed published experiences in restoration of Salicaceae forests, including 91 projects in 10 world regions, to construct a decision tree to inform restoration planning through explicit links between the well-studied biophysical requirements of Salicaceae regeneration and 17 specific restoration actions, the most popular being planting (in 55% of the projects), land contouring (30%), removal of competing vegetation (30%), site selection (26%), and irrigation (24%). We also identified research gaps related to Salicaceae forest restoration and discuss alternative, innovative and feasible approaches that incorporate the human component.

Journal of Environmental Management↗
USGS2021

Detrital zircon record of magmatism and sediment dispersal across the North American Cordilleran arc system (28-48°N)

As zircon U-Pb geochronology has become a leading method in sediment provenance studies and basin analysis over the past 20 years, the volume of detrital zircon data made available in published literature has enabled researchers to go beyond source-to-sink provenance studies to explore increasingly complex geologic problems. In this review, we utilize the growing body of detrital zircon data acquired from Jurassic-Paleocene forearc and foreland basin strata of the North American Cordillera to investigate the Mesozoic to earliest Cenozoic evolution of the arc and its associated basins between 28°N and 48°N. Our compilation includes 830 detrital zircon samples (101,898 individual ages) from 70 studies published between 2000 and 2020. For comparative purposes, we also compile 1307 igneous zircon U-Pb ages that characterize the magmatic history of the arc. We place primary emphasis on detrital zircon ages between 251 and 56 Ma that we infer to be uniquely derived from magmatic sources in the arc. Informed by existing knowledge of magmatic, structural, and sedimentological processes that acted on the orogen, we investigate spatial and temporal trends in these “arc-derived zircon” to establish a detrital record of arc magmatism, investigate source-to-sink relationships between the arc and adjacent basins, and discuss controls on sediment dispersal across the orogen. Our review shows that compilations of detrital zircon data from the Cordilleran forearc and foreland basin systems are excellent proxies for arc magmatism because the basins are enriched in arc-derived zircon and compilations provide space- and time-integrated records of crystallization ages. The compiled detrital zircon data support a history of continuous arc magmatism throughout Mesozoic and earliest Cenozoic time, characterized by low-volume magmatism from Triassic-Early Jurassic time (~251–174 Ma) and episodic higher-volume magmatism from Middle Jurassic-Late Cretaceous time (~174–66 Ma). These trends elucidate the initiation and timing of magmatic events at the orogen-scale and corroborate our understanding of cyclic arc behavior. Detrital zircon distributions are spatially and temporally variable both within and across basins, which we discuss relative to topographic development of the orogen and attendant responses of sediment dispersal systems. Detrital zircon distributions in the forearc signal rapid transfer of sediment from the arc to basins dominantly via fluvial processes. In contrast, detrital zircon distributions across the foreland reflect the presence of topographic barriers in the hinterland region of the arc that effectively isolated parts of the foreland. The presence of hinterland topography in turn highlights the important role of ash-fall events in delivering arc-derived zircon to the foreland, underscoring the need to consider ash-fall processes in paleodrainage reconstructions. These broad regional trends, and in general the close linkage between orogenic process and sediment dispersal, emerge from our compilation because it averages out much of the local variability observed in studies of more limited geographic or temporal extent.

North American Cordilleran arc system↗
USGS2008

Errors and parameter estimation in precipitation-runoff modeling: 1. Theory

Errors in complex conceptual precipitation-runoff models may be analyzed by placing them into a statistical framework. This amounts to treating the errors as random variables and defining the probabilistic structure of the errors. By using such a framework, a large array of techniques, many of which have been presented in the statistical literature, becomes available to the modeler for quantifying and analyzing the various sources of error. A number of these techniques are reviewed in this paper, with special attention to the peculiarities of hydrologic models. Known methodologies for parameter estimation (calibration) are particularly applicable for obtaining physically meaningful estimates and for explaining how bias in runoff prediction caused by model error and input error may contribute to bias in parameter estimation.

Water Resources Research↗
USGS2025

Bridging theory and practice to inform seed selection for restoration

Introduction Land managers often face the critical decision of what plant materials to select for ecological restoration. Selection depends on factors that span ecological conditions and human interventions in the restoration process, which can strongly influence the recovery of a degraded ecosystem. Objectives To improve the seed selection process, we compared scientific literature and guidance from five federal agencies to bridge seed selection “theory” and “practice” in the interior western and central United States. Methods We extracted recurring themes and keywords associated with abiotic, biotic, land management, and producer practices that influence seed selection and analyzed their proportional use between agency guidance and scientific literature. Results We identified significant overlap between key concepts in guidance and literature, highlighting the interconnectedness between science and management. However, nuanced patterns emerged across seed selection themes, including more focus in the literature on local adaptation and genetic structure, ramifications of introducing gene flow and artificial selection during plant production, and provenancing strategies to address changing climatic conditions. In contrast, agency guidance focused on genetically appropriate and environmentally suitable seed selection and practical concerns, including seed cost, availability, and diversity. Seed selection studies in the literature were concentrated in the Great Basin and Colorado Plateau, scattered in the Great Plains, and were largely experimental. Conclusions Our review suggests new opportunities for co-production of science and decision-making frameworks among researchers, land managers, and seed producers to inform seed selection guidance for restoration.

Restoration Ecology↗
USGS2016

Book review: Foundations of wildlife diseases

A new textbook for practitioners and students of wildlife disease is available. Rick Botzler and Richard Brown have provided an excellent addition to the wildlife disease literature with Foundations of Wildlife Diseases . It has been 8 years since the last major wildlife disease book ( Wobeser 2006 ), and over 40 years since the first major wildlife disease compilation ( Page 1975 ), an edited summary of the 3rd International Wildlife Disease meeting in Munich, Germany. Many people interested in wildlife diseases have waited eagerly for this book, and they will not be disappointed. Book information: Foundations of Wildlife Diseases. By Richard G. Botzler and Richard N. Brown. University of California Press, Oakland, California, USA. 2014. 429 pp., viii preface material. ISBN: 9780520276093.

Journal of Wildlife Diseases↗
USGS1997

The future of scientific communication in the earth sciences: The impact of the internet

Publication on paper of research results following peer-review and editing has been the accepted means of scientific communication for several centuries. Today, the continued growth in the volume of scientific literature, the increased unit costs of archiving paper publications, and the rapidly increasing power and availability of electronic technology are creating tremendous pressures on traditional scientific communication. The earth sciences are not immune from these pressures, and the role of the traditional publication as the primary means of communication is rapidly changing. Electronic publications and network technology are radically altering the relationship between interpretative result and the underlying data. Earth science research institutions, including the Kansas Geological Survey, are experimenting with new forms of on-line publication that assure broad access to research and data and improve application of research results to societal problems. ?? 1997 Elsevier Science Ltd.

Computers & Geosciences↗
USGS2012

Cryptic extinction of a common Pacific lizard Emoia impar (Squamata, Scincidae) from the Hawaiian Islands.

Most documented declines of tropical reptiles are of dramatic or enigmatic species. Declines of widespread species tend to be cryptic. The early (1900s) decline and extinction of the common Pacific skink Emoia impar from the Hawaiian Islands is documented here through an assessment of literature, museum vouchers and recent fieldwork. This decline appears contemporaneous with the documented declines of invertebrates and birds across the Hawaiian Islands. A review of the plausible causal factors indicates that the spread of the introduced big-headed ant Pheidole megacephala is the most likely factor in this lizard decline. The introduction and spread of a similar skink Lampropholis delicata across the islands appears to temporally follow the decline of E. impar , although there is no evidence of competition between these species. It appears that L. delicata is spreading to occupy the niche vacated by the extirpated E. impar . Further confusion exists because the skink E. cyanura , which is very similar in appearance to E. impar , appears to have been introduced to one site within a hotel on Kaua'i and persisted as a population at that site for approximately 2 decades (1970s–1990s) but is now also extirpated. This study highlights the cryptic nature of this early species extinction as evidence that current biogeographical patterns of non-charismatic or enigmatic reptiles across the Pacific may be the historical result of early widespread invasion by ants. Conservation and restoration activities for reptiles in the tropical Pacific should consider this possibility and evaluate all evidence prior to any implementation.

Hawai'i↗
USGS2017

Characterizing Golden Eagle risk to lead and anticoagulant rodenticide exposure: A review

Contaminant exposure is among the many threats to Golden Eagle ( Aquila chrysaetos ) populations throughout North America, particularly lead poisoning and anticoagulant rodenticides (AR). These threats may act in concert with others (e.g., lead poisoning and trauma associated with striking objects) to exacerbate risk. Golden Eagles are skilled hunters but also exploit scavenging opportunities, making them particularly susceptible to contaminant exposure from ingesting tissues of poisoned or shot animals. Lead poisoning has long been recognized as an important source of mortality for Golden Eagles throughout North America. More recently, ARs have been associated with both sublethal and lethal effects in raptor species worldwide. In this review, we examine the current state of knowledge for lead and AR exposure in Golden Eagles, drawing from the broader raptor contaminant ecology literature. We examine lead and AR sources within Golden Eagle habitats, exposure routes and toxicity, effects on individuals and populations, synergistic effects, and data and information needs. Continued research addressing data needs and information gaps will help with Golden Eagle conservation planning.

Journal of Raptor Research↗
USGS2023

Achieving water quality goals in the Chesapeake Bay: A comprehensive evaluation of system response

A Comprehensive Evaluation of System Response Achieving Water Quality Goals in the Chesapeake Bay: A Comprehensive Evaluation of System Response (CESR) includes an evaluation of why progress toward meeting the TMDL and water quality standards has been slower than expected and offers options for how progress can be accelerated. This report is a summation of a three year investigation into the 40 year effort to reduce nutrient loads to Chesapeake Bay. History The effort began as a STAC independent initiative in March 2019, after Kurt Stephenson, Zach Easton, and Brian Benham proposed the idea of a report that would identify gaps and uncertainties in system response—physical, chemical, biological, and socioeconomic—that impact efforts designed to attain water quality standards in Chesapeake Bay. As STAC Chair at the time, Benham facilitated the development of a collaborative process that would engage the entire committee. As a first step in approaching the long causal chain that links management actions to their eventual impact on water quality and living resources, workgroups were formed around the subsystems of this chain: nutrient and sediment reductions (watershed), water quality response to nutrient and sediment reductions (estuary) and living resource response to water quality (living resources). Each of these workgroups generated an independent document with a self-determined scope (i.e., workgroups were afforded flexibility to address issues beyond the original objectives). Because the content of each document was both unique and substantial, STAC chose to publish them as stand-alone documents with authorship attribution. In the second step, a steering committee developed a series of framing questions to guide the preparation of this report that would meet the objective of identifying gaps and uncertainties in achieving the Bay TMDL and water quality standards. Coeditors Stephenson and Wardrop, supported to great extent by a subgroup of the Steering Committee (Leonard Shabman, Zach Easton, Jeremy Testa, William Dennison, Kenny Rose, and Mark Monaco) were tasked with assembling ideas and contributions to write a single draft text, drawing material from the aforementioned resource documents, STAC and Chesapeake Bay Program reports, the scientific literature, and a limited amount of additional analyses performed in collaboration with Bay Program scientists. The resulting report was then submitted for several reviews by both steering committee members and the membership at-large to produce a consensus report.

Maryland, Virginia↗
USGS2014

The valid generic name for red-backed voles (Muroidea: Cricetidae: Arvicolinae): Restatement of the case for Myodes Pallas, 1811

In view of contradictions in the recent literature, the valid genus-group name to be applied to northern red-backed voles— Myodes Pallas, 1811, or Clethrionomys Tilesius, 1850—is reviewed. To develop the thesis that Myodes (type species, Mus rutilus Pallas, 1779) is the correct name, our discussion explores the 19th-century taxonomic works that bear on the relevant taxa, the transition in zoological codes apropos the identification of type species, and past nomenclatural habits in cases where no type species was originally indicated. We conclude that Myodes is the senior name to use for the genus-group taxon that includes the Holarctic species rutilus and frame this conclusion within a synonymy of the genus.

Journal of Mammalogy↗
USGS2024

Designing count-based studies in a world of hierarchical models

Advances in hierarchical modeling have improved estimation of ecological parameters from count data, especially those quantifying population abundance, distribution, and dynamics by explicitly accounting for observation processes, particularly incomplete detection. Even hierarchical models that account for incomplete detection, however, cannot compensate for data limitations stemming from poorly planned sampling. Ecologists therefore need guidance for planning count-based studies that follow established sampling theory, collect appropriate data, and apply current modeling approaches to answer their research questions. We synthesize available literature relevant to guiding count-based studies. Considering the central historical and ongoing contributions of avian studies to ecological knowledge, we focus on birds as a case study for this review, but the basic principles apply to all populations whose members are sufficiently observable to be counted. The sequence of our review represents the thought process in which we encourage ecologists to engage 1) the research question(s) and population parameters to measure, 2) sampling design, 3) analytical framework, 4) temporal design, and 5) survey protocol. We also provide 2 hypothetical demonstrations of these study plan components representing different research questions and study systems. Mirroring the structure of hierarchical models, we suggest researchers primarily focus on the ecological processes of interest when designing their approach to sampling, and wait to consider logistical constraints of data collection and observation processes when developing the survey protocol. We offer a broad framework for researchers planning count-based studies, while pointing to relevant literature elaborating on particular tools and concepts.

Journal of Wildlife Management↗
USGS2024

A conceptual framework to assess post-wildfire water quality: State of the science and knowledge gaps

Wildfire substantially alters aquatic ecosystems by inducing moderate to catastrophic physical and chemical changes. However, the relations of environmental and watershed variables that drive those effects are complex. We present a Driver-Factor-Stressor-Effect (DFSE) conceptual framework to assess the current state of the science related to post-wildfire water-quality. We reviewed 64 peer-reviewed papers using the DFSE framework to identify drivers, factors, stressors, and effects associated with each study. A total of five drivers were identified and ranked according to their frequency of occurrence in the literature: atmospheric processes > fire characteristics > ecologic processes and characteristics > land surface characteristics > soil characteristics. Commonly reported stressors include increased nutrients, runoff, and sediment transport. Furthermore, although several different factors have been used at least once to explain water-quality effects, relatively few factors outside of precipitation and fire characteristics are frequently studied. We identified several gaps indicating the need for long-term monitoring, multi-factor studies, consideration of organic contaminants, consideration of groundwater, and inclusion of soil characteristics. This assessment expands on other reviews and meta-analyses by exploring causal linkages between influential variables and overall effects in post-wildfire watersheds. Information gathered from our assessment and the framework itself can be used to inform future monitoring plans and as a guide for modeling efforts focused on better understanding specific processes or to mitigate potential risks of post-wildfire water quality.

Water Resources Research↗
USGS2018

Critically assessing the utility of portable lead analyzers for wildlife conservation

Lead (Pb) exposure in wildlife is a widespread management and conservation concern. Quantitative determination of Pb concentrations in wildlife tissues is the foundation for estimating exposure and risk. Development of low‐cost, portable instruments has improved access and cost‐effectiveness of determining Pb concentrations in blood samples, while also facilitating the ability for wildlife researchers to conduct near real‐time Pb testing. However, these instruments, which use anodic stripping voltammetry (ASV) methodology, may produce an analytical bias in wildlife‐blood Pb concentrations. Additionally, their simplicity invites use without appropriate quality‐assurance–quality‐control measures. Together, these factors can reduce data quality and hamper the ability to evaluate it, raising concerns about use of these instruments to inform important conservation issues. We document the extent to which this bias is addressed in the wildlife toxicology literature, develop quantitative approaches for correcting the bias, and provide recommendations to ensure robust data quality when using these instruments. Of the 25 studies we reviewed that referenced ASV use for determining Pb exposure in wildlife, only 32% acknowledged the existence of bias from the instrument. Importantly, another 20% of the studies actually reported ASV and spectroscopic‐based results together without acknowledging their lack of equivalence. Using a multispecies data set of avian blood Pb concentrations, we found that ASV‐based estimates of paired blood Pb concentrations were 30–38% lower than those from standard spectrometric‐based methods. We provide regression equations based on this analysis of 453 blood samples to allow users of ASV instruments to adjust Pb concentrations to spectrometric‐equivalent values, and propose a series of guidelines to follow when using these instruments to improve data validity.

Wildlife Society Bulletin↗