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At least 775 records · Page 43Linked to original sources

USGS1994

The volcanic, sedimentologic, and paleolimnologic history of the Crater Lake caldera floor, Oregon:Evidence for small caldera evolution

Apparent phreatic explosion craters, caldera-floor volcanic cones, and geothermal features outline a ring fracture zone along which Mount Mazama collapsed to form the Crater Lake caldera during its climactic eruption about 6,850 yr B.P. Within a few years, subaerial deposits infilled the phreatic craters and then formed a thick wedge (10-20 m) of mass flow deposits shed from caldera walls. Intense volcanic activity (phreatic explosions, subaerial flows, and hydrothermal venting) occurred during this early postcaldera stage, and a central platform of subaerial andesite flows and scoria formed on the caldera floor. Radiocarbon ages suggest that deposition of Iacustrine hemipelagic sediment began on the central platform about 150 yr after the caldera collapse. This is the minimum time to fill the lake halfway with water and cover the platform assuming present hydrologic conditions of precipitation and evaporation but with negligible leakage of lake water. Wizard Island formed during the final part of the 300-yr lake-filling period as shown by its (1) upper subaerial lava flows from 0 to -70 m below present water level and lower subaqueous lava flows from -70 to -500 m and by (2) lacustrine turbidite sand derived from Wizard Island that was deposited on the central platform about 350 yr after the caldera collapse. Pollen stratigraphy indicates that the warm and dry climate of middle Holocene time correlates with the early lake deposits. Diatom stratigraphy also suggests a more thermally stratified and phosphate-rich environment associated respectively with this climate and greater hydrothermal activity during the early lake history. Apparent coarse-grained and thick-bedded turbidites of the early lake beds were deposited throughout northwest, southwest, and eastern basins during the time that volcanic and seismic activity formed the subaqueous Wizard Island, Merriam Cone, and rhyodacite dome. The last known postcaldera volcanic activity produced a subaqueous rhyodacite ash bed and dome about 4,240 yr B.P. The late lake beds with base-of-slope aprons and thin, fine-grained basin-plain turbidites were deposited during the volcanically quiescent period of the past 4,000 yr. Deposits in Crater Lake and on similar caldera floors suggest that four stages characterize the postcaldera evolution of smaller (≤10 km in diameter) terrestrial caldera lake floors: (1) initial-stage caldera collapse forms the ring fracture zone that controls location of the main volcanic eruptive centers and sedimentary basin depocenters on the caldera floor; (2) early-stage subaerial sedimentation rapidly fills ring-fracture depressions and constructs basin-floor debris fans from calderawall landslides; (3) first-stage subaqueous sedimentation deposits thick flat-lying lake turbidites throughout basins, while a thin blanket of hemipelagic sediment covers volcanic edifices that continue to form concurrently with lake sedimentation; and (4) second-stage subaqueous sedimentation after the waning of major volcanic activity and the earlier periods of most rapid sedimentation develops small sili-ciclastic basin base-of-slope turbidite aprons and central basin plains. Renewed volcanic activity or lake destruction could cause part or all of the cycle to repeat.

Oregon↗

USGS2009

Sand resources, regional geology, and coastal processes of the Chandeleur Islands Coastal System: An evaluation of the Breton National Wildlife Refuge

Breton National Wildlife Refuge, the Chandeleur Islands chain in Louisiana, provides habitat and nesting areas for wildlife and is an initial barrier protecting New Orleans from storms. The U.S. Geological Survey (USGS) in partnership with the University of New Orleans Pontchartrain Institute for Environmental Sciences undertook an intensive study that included (1) an analysis of island change based on historical maps and remotely sensed shoreline and topographic data; (2) a series of lidar surveys at 3- to 4-month intervals after Hurricane Katrina to determine barrier island recovery potential; (3) a discussion of sea level rise and effects on the islands; (4) an analysis of sea floor evolution and sediment dynamics in the refuge over the past 150 years; (5) an assessment of the local sediment transport and sediment resource availability based on the bathymetric and subbottom data; (6) a carefully selected core collection effort to groundtruth the geophysical data and more fully characterize the sediments composing the islands and surrounds; (7) an additional survey of the St. Bernard Shoals to assess their potential as a sand resource; and (8) a modeling study to numerically simulate the potential response of the islands to the low-intensity, intermediate, and extreme events likely to affect the refuge over the next 50 years. Results indicate that the islands have become fragmented and greatly diminished in subaerial extent over time: the southern islands retreating landward as they reorganize into subaerial features, the northern islands remaining in place. Breton Island, because maintenance of the Mississippi River-Gulf Outlet (MRGO) outer bar channel requires dredging, is deprived of sand sufficient to sustain itself. Regional sediment transport trends indicate that large storms are extremely effective in transporting sand and controlling the shoreline development and barrier island geometry. Sand is transported north and south from a divergent zone near Monkey Bayou at the southern end of the Chandeleur Islands. Numerical simulation of waves and sediment transport supports the geophysical results and indicates that vast areas of the lower shoreface are affected and are undergoing erosion during storm events, that there is little or no fair weather mechanism to rework material into the littoral system, and that as a result, there is a net loss of sediment from the system. Lidar surveys revealed that the island chain immediately after Hurricane Katrina lost about 84 percent of its area and about 92 percent of its prestorm volume. Marsh platforms that supported the islands’ sand prior to the storm were reduced in width by more than one-half. Repeated lidar surveys document that in places the shoreline has retreated about 100 m under the relatively low-energy waves since Hurricanes Katrina and Rita; however, this retreat is nonuniform. Recent high-resolution geophysical surveys of the sea floor and subsurface within 5–6 km of the Chandeleur Islands during 2006 and 2007 show that, in addition to the sand that is rebuilding portions of the island chain, a large volume of sand is contained in Hewes Point, in an extensive subtidal spit platform that has formed at the northern end of the Chandeleur Islands. Hewes Point appears to be the depositional terminus of the alongshore transport system. In the southern Chandeleurs, sand is being deposited in a broad tabular deposit near Breton Island called the southern offshore sand sheet. These two depocenters account for approximately 70 percent of the estimated sediment volume located in potential borrow sites. An additional large potential source of sand for restoration lies in the St. Bernard Shoals, which are estimated to contain approximately 200 × 10 6 m 3 of sand. Successful restoration planning for the Breton National Wildlife Refuge should mimic the natural processes of early stages of barrier island evolution including lateral transport to the flanks of the island chain from a centralized sand source that will ultimately enhance the ability of the islands to naturally build backbarrier marsh, dunes, and a continuous sandy shoreline. Barrier island sediment nourishment should be executed with the understanding that gulf shoreline erosion is inevitable but that island area can be maintained and enhanced during retreat (thus significantly prolonging the life of the island chain) with strategic sand placement.

Louisiana↗

USGS2007

Steeply dipping heaving bedrock, Colorado: Part 3 - Environmental controls and heaving processes

This paper examines the environmental processes and mechanisms that govern differential heaving in steeply dipping claystone bedrock near Denver, Colorado. Three potential heave mechanisms and causal processes were evaluated: (1) rebound expansion, from reduced overburden stress; (2) expansive gypsum-crystal precipitation, from oxidation of pyrite; and (3) swelling of clay minerals, from increased ground moisture. First, we documented the effect of short-term changes in overburden stress, atmospheric exposure, and ground moisture on bedrock at various field sites and in laboratory samples. Second, we documented differential heaving episodes in outcrops and at construction and developed sites. We found that unloading and exposure of the bedrock in construction-cut areas are essentially one-time processes that result in drying and desiccation of the near-surface bedrock, with no visible heaving response. In contrast, wetting produces a distinct swelling response in the claystone strata, and it may occur repeatedly as natural precipitation or from lawn irrigation. We documented 2.5 to 7.5 cm (1 to 3 in.) of differential heaving in 24 hours triggered by sudden infiltration of water at the exposed ground surface in outcrops and at construction sites. From these results, we interpret that rebound and pyrite weathering, both of which figure strongly into the long-term geologic evolution of the geologic framework, do not appear to be major heave mechanisms at these excavation depths. Heaving of the claystone takes two forms: (1) hydration swelling of dipping bentonitic beds or zones, and (2) hydration swelling within bedrock blocks accommodated by lateral, thrust-shear movements, along pre-existing bedding and fracture planes.

Environmental & Engineering Geoscience↗

USGS2026

Semantic segmentation of light-toned veins in multimodal ChemCam data

Since the Mars Science Laboratory landed in 2012, the ChemCam instrument aboard the rover has collected in-situ laser-induced breakdown spectroscopy (LIBS) data and context images along more than 35 km of the Gale Crater traverse, providing valuable observations including diagenetic features such as light-toned veins. These veins are of particular scientific interest because they are interpreted as indicators of past fluid circulation on Mars and provide insights into the evolution of habitability on Mars. Their identification, however, currently relies on manual visual inspection of Remote Micro Imager (RMI) images, a process that is time-consuming and sensitive to differences in human interpretation. To address this issue, in this paper we introduce a novel pixel-level labeled, multimodal dataset of ChemCam observations specifically tailored for vein detection, along with customized U-Net models to integrate both textural (RMI) and chemical (LIBS) modalities. To further ensure trustworthy scientific use, we incorporate the Learn-Then-Test (LTT) framework to provide statistical control of the false discovery rate without requiring model retraining. The experimental results demonstrate that the proposed customized U-Net models trained on the developed dataset, combined with risk-controlled prediction, increases the efficiency of pixel-level vein identification through automation and produces statistically reliable predictions for multimodal ChemCam data.

Scientific Reports↗

USGS2019

Landscape genetics reveals unique and shared effects of urbanization for two sympatric pool-breeding amphibians

Metapopulation-structured species can be negatively affected when landscape fragmentation impairs connectivity. We investigated the effects of urbanization on genetic diversity and gene flow for two sympatric amphibian species, spotted salamanders ( Ambystoma maculatum ) and wood frogs ( Lithobates sylvaticus ), across a large (>35,000 km 2 ) landscape in Maine, USA, containing numerous natural and anthropogenic gradients. Isolation-by-distance (IBD) patterns differed between the species. Spotted salamanders showed a linear and relatively high variance relationship between genetic and geographic distances ( r = .057, p < .001), whereas wood frogs exhibited a strongly nonlinear and lower variance relationship ( r = 0.429, p < .001). Scale dependence analysis of IBD found gene flow has its most predictable influence (strongest IBD correlations) at distances up to 9 km for spotted salamanders and up to 6 km for wood frogs. Estimated effective migration surfaces revealed contrasting patterns of high and low genetic diversity and gene flow between the two species. Population isolation, quantified as the mean IBD residuals for each population, was associated with local urbanization and less genetic diversity in both species. The influence of geographic proximity and urbanization on population connectivity was further supported by distance-based redundancy analysis and multiple matrix regression with randomization. Resistance surface modeling found interpopulation connectivity to be influenced by developed land cover, light roads, interstates, and topography for both species, plus secondary roads and rivers for wood frogs. Our results highlight the influence of anthropogenic landscape features within the context of natural features and broad spatial genetic patterns, in turn supporting the premise that while urbanization significantly restricts interpopulation connectivity for wood frogs and spotted salamanders, specific landscape elements have unique effects on these two sympatric species.

Maine↗

USGS2019

The integrated monarch monitoring program: From design to implementation

Steep declines in North American monarch butterfly ( Danaus plexippus ) populations have prompted continent-wide conservation efforts. While monarch monitoring efforts have existed for years, we lack a comprehensive approach to monitoring population vital rates integrated with habitat quality to inform adaptive management and effective conservation strategies. Building a geographically and ecologically representative dataset of monarchs and their habitat will improve these efforts. These data will help track long-term changes in the distribution and abundance of monarchs and their habitats, refine population and habitat models, and illuminate how conservation activities affect monarchs and their habitats. The Monarch Conservation Science Partnership developed the Integrated Monarch Monitoring Program (IMMP) to profile breeding habitats and their use by monarchs in North America. A spatially balanced random sampling framework guides site selection, while also allowing opportunistic inclusion of sites chosen by participants, such as conservation areas. The IMMP weaves new protocols together with those from existing monitoring programs to improve data compatibility for assessing milkweed (Asclepias spp.) density, nectar resources, monarch reproduction and survival, and adult monarch habitat use. Participants may select a protocol subset according to interests or local monitoring objectives, thereby maximizing contributions. Conservation partners, including public and private land managers, academic researchers, and citizen scientists contribute data to a national dataset available for analyses at multiple scales. We describe the program and its development, implementation elements that make the program robust and feasible, participation to date, and how IMMP data can advance research and conservation for monarchs, pollinators, and their habitats.

North America↗

USGS2020

Evolution of faulting induced by deep fluid injection, Paradox Valley, Colorado

High‐pressure fluid injection into a subhorizontal confined aquifer at 4.3–4.6 km depth induced > 7000 "> > 7000 >7000 earthquakes between 1991 and 2012 within once seismically quiescent Paradox Valley in Colorado, with magnitudes up to M w "> M w Mw 3.9. Earthquake hypocenters expanded laterally away from the well with time, defining the margins of the aquifer pressurized by injection at the well. Within 5 km of the well, alignment of earthquake hypocenters defines strikes of nine vertical fault zones. Previous studies show that these fault zones predate injection, producing left‐stepping offsets in the normal faults of the Wray‐Mesa fault system that cradles Paradox Valley. Hypocenters, rakes, and strikes of 2041 well‐constrained focal mechanisms show that most injection‐related earthquakes occur where these vertical faults intersect the pressurized aquifer. Well‐defined focal mechanisms show that this induced seismicity consists of Riedel shear faults at acute angles to the strikes of these fault zones. These small faults develop an anastomosing fault structure of focal planes along each planar fault zone, as fluid injection continues, even as their hypocenters define a single planar fault zone. Failure conditions at each hypocenter are found using a fully coupled poroelastic analysis of stress induced by fluid injection, and this analysis indicates a minimum Coulomb failure condition of 0.1 MPa. This failure condition is primarily a result of aquifer pore‐fluid pressurization, as almost all well‐located seismicity is within the pressurized aquifer. Reducing the rate of injection and frequent well shutdowns in the second decade nearly eliminated induced seismicity, except very near the well where gradients in pressurization are the largest. Despite these decreases in failure conditions and seismicity, some fault zones continued to produce earthquakes larger than M 3 as injection continued.

California↗

USGS1988

Acetylene as a substrate in the development of primordial bacterial communities

The fermentation of atmospheric acetylene by anaerobic bacteria is proposed as the basis of a primordial heterotrophic food chain. The accumulation of fermentation products (acetaldehyde, ethanol, acetate and hydrogen) would create niches for sulfate-respiring bacteria as well as methanogens. Formation of acetylene-free environments in soils and sediments would also alter the function of nitrogenase from detoxification to nitrogen-fixation. The possibility of an acetylene-based anaerobic food chain in Jovian-type atmospheres is discussed. ?? 1988 Kluwer Academic Publishers.

Origins of Life and Evolution of the Biosphere↗

USGS2023

Alternative measures of trait–niche relationships: A test on dispersal traits in saproxylic beetles

Functional trait approaches are common in ecology, but a lack of clear hypotheses on how traits relate to environmental gradients (i.e., trait–niche relationships) often makes uncovering mechanisms difficult. Furthermore, measures of community functional structure differ in their implications, yet inferences are seldom compared among metrics. Community-weighted mean trait values (CWMs), a common measure, are largely driven by the most common species and thus do not reflect community-wide trait–niche relationships per se. Alternatively, trait–niche relationships can be estimated across a larger group of species using hierarchical joint species distribution models (JSDMs), quantified by a parameter Γ. We investigated how inferences about trait–niche relationships are affected by the choice of metric. Using deadwood-dependent (saproxylic) beetles in fragmented Finnish forests, we followed a protocol for investigating trait–niche relationships by (1) identifying environmental filters (climate, forest age, and deadwood volume), (2) relating these to an ecological function (dispersal ability), and (3) identifying traits related to this function (wing morphology). We tested 18 hypothesized dispersal relationships using both CWM and Γ estimates across these environmental gradients. CWMs were more likely than Γ to show support for trait–niche relationships. Up to 13% of species' realized niches were explained by dispersal traits, but the directions of effects were consistent with fewer than 11%–39% of our 18 trait–niche hypotheses (depending on the metric used). This highlights the difficulty in connecting morphological traits and ecological functions in insects, despite the clear conceptual link between landscape connectivity and flight-related traits. Caution is thus warranted in hypothesis development, particularly where apparent trait–function links are less clear. Inferences differ when CWMs versus Γ estimates are used, necessitating the choice of a metric that reflects study questions. CWMs help explain the effects of environmental gradients on community trait composition, whereas the effects of traits on species' niches are better estimated using hierarchical JSDMs.

Ecology and Evolution↗

USGS2002

Analysis of long-period events recorded at Mount Etna (Italy) in 1992, and their relationship to eruptive activity

Seismic activity recorded at Mount Etna during 1992 was characterized by long-period (LP) events and tremor with fluctuating amplitudes. These signals were associated with the evolution of the eruptive activity that began on December 14, 1991. Following the occurrence of numerous volcano-tectonic earthquakes at the onset of the eruption, LP events dominated the overall seismicity starting in January, 1992. The LP activity occurred primarily in swarms, which were temporally correlated with episodic collapses of the crater floor in the Northeast Crater. Source depths determined for selected LP events suggest a source region located slightly east of Northeast Crater and extending from the surface to a depth of 2000 m. Based on the characteristic signatures of the time series, four families of LP events are identified. Each family shares common spectral peaks independent of azimuth and distance to the source. These spectral features are used to develop a fluid-filled crack model of the source. We hypothesize that the locus of the LP events represents a segment of the magma feeding system connecting a depressurizing magma body with a dike extending in the SSE direction along the western wall of Valle del Bove, toward the site of the Mount Etna eruption. We surmise that magma withdrawal from the source volume beneath Northeast Crater may have caused repeated collapses of the crater floor. Some collapse events may have produced pressure transients in the subjacent dike which acted as seismic wave sources for LP events.

Mount Etna, Sicily↗

USGS1988

Pyrolysis g.c.-m.s. of a series of degraded woods and coalified logs that increase in rank from peat to subbituminous coal

Xylem tissue from degraded wood and coalified logs or stems was examined by pyrolysis g.c.-m.s. to improve understanding of the coalification process. The pyrolysis data, when combined with solid-state 13 C n.m.r. data for the same samples, show several stages of evolution during coalification. The first stage, microbial degradation in peat, involves the selective degradation of cellulosic components and preservation of lignin-like components. As coalification increases, the lignin structural units undergo a series of defunctionalization reactions. The first of these involve loss of methoxyl groups, with replacement by phenolic hydroxyls such that catechol-like structures are produced. As the xylem tissue is converted to subbituminous coal, the persistence of phenols and methylated phenols in pyrolysis g.c.-m.s. data of subbituminous coal suggests that the catechol-like structures are being converted to phenol-like structures. The ability to discern detailed changes in the chemical structural composition of a genetically and histologically related series of samples provides an ideal method for developing models of coal structure, especially that of low-rank coal.

Fuel↗

USGS2008

Simulation of the Quantity, Variability, and Timing of Streamflow in the Dennys River Basin, Maine, by Use of a Precipitation-Runoff Watershed Model

The U.S. Geological Survey (USGS), in cooperation with the Maine Department of Marine Resources Bureau of Sea Run Fisheries and Habitat, began a study in 2004 to characterize the quantity, variability, and timing of streamflow in the Dennys River. The study included a synoptic summary of historical streamflow data at a long-term streamflow gage, collecting data from an additional four short-term streamflow gages, and the development and evaluation of a distributed-parameter watershed model for the Dennys River Basin. The watershed model used in this investigation was the USGS Precipitation-Runoff Modeling System (PRMS). The Geographic Information System (GIS) Weasel was used to delineate the Dennys River Basin and subbasins and derive parameters for their physical geographic features. Calibration of the models used in this investigation involved a four-step procedure in which model output was evaluated against four calibration data sets using computed objective functions for solar radiation, potential evapotranspiration, annual and seasonal water budgets, and daily streamflows. The calibration procedure involved thousands of model runs and was carried out using the USGS software application Luca (Let us calibrate). Luca uses the Shuffled Complex Evolution (SCE) global search algorithm to calibrate the model parameters. The SCE method reliably produces satisfactory solutions for large, complex optimization problems. The primary calibration effort went into the Dennys main stem watershed model. Calibrated parameter values obtained for the Dennys main stem model were transferred to the Cathance Stream model, and a similar four-step SCE calibration procedure was performed; this effort was undertaken to determine the potential to transfer modeling information to a nearby basin in the same region. The calibrated Dennys main stem watershed model performed with Nash-Sutcliffe efficiency (NSE) statistic values for the calibration period and evaluation period of 0.79 and 0.76, respectively. The Cathance Stream model had an NSE value of 0.68. The Dennys River Basin models make use of limited streamflow-gaging station data and provide information to characterize subbasin hydrology. The calibrated PRMS watershed models of the Dennys River Basin provide simulated daily streamflow time series from October 1, 1985, through September 30, 2006, for nearly any location within the basin. These models enable natural-resources managers to characterize the timing and quantity of water moving through the basin to support many endeavors including geochemical calculations, water-use assessment, Atlantic salmon population dynamics and migration modeling, habitat modeling and assessment, and other resource-management scenario evaluations. Characterizing streamflow contributions from subbasins in the basin and the relative amounts of surface- and ground-water contributions to streamflow throughout the basin will lead to a better understanding of water quantity and quality in the basin. Improved water-resources information will support Atlantic salmon protection efforts.

Scientific Investigations Report↗

USGS2015

General classification handbook for floodplain vegetation in large river systems

This handbook describes the General Wetland Vegetation Classification System developed as part of the U.S. Army Corps of Engineers’ Upper Mississippi River Restoration (UMRR) Program, Long Term Resource Monitoring (LTRM) element. The UMRR is a cooperative effort between the U.S. Army Corps of Engineers, U.S. Geological Survey, U.S. Fish and Wildlife Service, and the states of Illinois, Iowa, Minnesota, Missouri, and Wisconsin. The classification system consists of 31 general map classes and has been used to create systemic vegetation data layers throughout the diverse Upper Mississippi River System (UMRS), which includes the commercially navigable reaches of the Mississippi River from Minneapolis, Minnesota, in the north to Cairo, Illinois, in the south, the Illinois River, and navigable portions of the Kaskaskia, Black, St. Croix, and Minnesota Rivers. In addition, this handbook describes the evolution of the General Wetland Vegetation Classification System, discusses the process of creating a vegetation data layer, and describes each of the 31 map classes in detail. The handbook also acts as a pictorial guide to each of the map classes as they may appear in the field, as well as on color-infrared imagery. This version is an update to the original handbook published in 2004.

Techniques and Methods↗

USGS2009

Constraining earthquake source inversions with GPS data: 2. A two-step approach to combine seismic and geodetic data sets

We present a new method to combine static and wavefield data to image earthquake ruptures. Our combined inversion is a two-step procedure, following the work of Hernandez et al. (1999), and takes into account the differences between the resolutions of the two data sets. The first step consists of an inversion of the static field, which yields a map of slip amplitude. This inversion exploits a special irregular grid that takes into account the resolution of the static data. The second step is an inversion of the radiated wavefield; it results in the determination of the time evolution of slip on the fault. In the second step, the slip amplitude is constrained to resemble the static slip amplitude map inferred from the GPS inversion. Using this combined inversion, we study the source process of the 2004 M6 Parkfield, California, earthquake. We conclude that slip occurred in two main regions of the fault, each of which displayed distinct rupture behaviors. Slip initiated at the hypocenter with a very strong bilateral burst of energy. Here, slip was localized in a narrow area approximately 10 km long, the rupture velocity was very fast (???3.5 km/s), and slip only lasted a short period of time (<1 s). Then the rupture proceeded to a wider region 12-20 km northwest of the hypocenter. Here, the earthquake developed in a more moderated way: the rupture velocity slowed to ???3.0 km/s and slip lasted longer (1-2 s). The maximum slip amplitude was 0.45 m. Copyright 2009 by the American Geophysical Union.

Journal of Geophysical Research B: Solid Earth↗

USGS2023

Inferring pathogen presence when sample misclassification and partial observation occur

Surveillance programmes are essential for detecting emerging pathogens and often rely on molecular methods to make inference about the presence of a target disease agent. However, molecular methods rarely detect target DNA perfectly. For example, molecular pathogen detection methods can result in misclassification (i.e. false positives and false negatives) or partial detection errors (i.e. detections with ‘ambiguous’, ‘uncertain’ or ‘equivocal’ results). Then, when data are to be analysed, these partial observations are either discarded or censored; this, however, disregards information that could be used to make inference about the true state of the system. There is a critical need for more direction and guidance related to how many samples are enough to declare a unit of interest ‘pathogen free’. Here, we develop a Bayesian hierarchal framework that accommodates false negative, false positive and uncertain detections to improve inference related to the occupancy of a pathogen. We apply our modelling framework to a case study of the fungal pathogen Pseudogymnoascus destructans (Pd) identified in Texas bats at the invasion front of white-nose syndrome. To improve future surveillance programmes, we provide guidance on sample sizes required to be 95% certain a target organism is absent from a site. We found that the presence of uncertain detections increased the variability of resulting posterior probability distributions of pathogen occurrence, and that our estimates of required sample size were very sensitive to prior information about pathogen occupancy, pathogen prevalence and diagnostic test specificity. In the Pd case study, we found that the posterior probability of occupancy was very low in 2018, but occupancy probability approached 1 in 2020, reflecting increasing prior probabilities of occupancy and prevalence elicited from the site manager. Our modelling framework provides the user a posterior probability distribution of pathogen occurrence, which allows for subjective interpretation by the decision-maker. To help readers apply and use the methods we developed, we provide an interactive RShiny app that generates target species occupancy estimation and sample size estimates to make these methods more accessible to the scientific community ( https://rmummah.shinyapps.io/ambigDetect_sampleSize ). This modelling framework and sample size guide may be useful for improving inferences from molecular surveillance data about emerging pathogens, non-native invasive species and endangered species where misclassifications and ambiguous detections occur.

Methods in Ecology and Evolution↗

USGS2022

Developing landslide chronologies using landslide-dammed lakes in the Oregon Coast Range

The Oregon Coast Range is a dynamic landscape that is continually shaped by shallow and deep-seated landslides that can have disastrous consequences to infrastructure and human lives. Searching for evidence of potentially coseismic mass wasting is incredibly difficult, particularly when historical observations are limited. Landslide-dammed lakes with submerged “ghost forests” in the Oregon Coast Range present the unique opportunity to establish landslide chronologies with subannual accuracy when dendrochronology is applied. This field guide will visit the unique landslide-dammed Klickitat Lake and explore a drowned ‘ghost forest’ to discuss methods used to establish a prehistoric landslide chronology in western Oregon, USA. After exploring the lake and exposing its geomorphic secrets, the guide will end with a stop on Marys Peak, a mafic volcanic intrusion composed of gabbroic dikes and pillow basalt that forms the highest point in the Oregon Coast Range. With the landscape of western Oregon laid out before us, we will discuss short- and long-term geomorphic evolution of the Oregon Coast Range and Willamette Valley.

Oregon↗

USGS2007

Layered intrusions of the Duluth Complex, Minnesota, USA

The Duluth Complex and associated subvolcanic intrusions comprise a large (5,000 km 2 ) intrusive complex in northeastern Minnesota that was emplaced into comagmatic volcanics during the development of the 1.1 Ga Midcontinent rift in North America. In addition to anorthositic and felsic intrusions, the Duluth Complex is composed of many individual mafic layered intrusions of tholeiitic affinity. The cumulate stratigraphies and cryptic variations of six of the better exposed and better studied intrusions are described here to demonstrate the variability in their cumulus mineral paragenesis. Although the general paragenetic sequence is: O1(±Pl) → Pl+Ol → Pl+Cpx+Ox(±Ol±Opx) → Pl+Cpx+Ox+Ap(±Ol) considerable differences exist among the six intrusions in the relative order and timing of cumulus arrivals, most notably with regard to augite (Cpx) and Fe-Ti oxide (Ox). The various cumulate stratigraphies and cryptic variations represented by the six intrusions described here largely reflect differences in the degree of open-system behaviour to recharge, eruption, and country-rock assimilation, but also may have been influenced by differences in parent magma composition, in the efficiency of fractional crystallization, and in the conditions of crystallization ( e.g. P total , f O2 P H2O ). The Sonju Lake intrusion, wherein cumulus augite arrived before ilmenite, formed by essentially closed-system fractional crystallization. However, its compositional evolution may have been affected to an uncertain degree by assimilation of a granitic hanging-wall. The monotonous, thick troctolitic cumulate sequences of the lower parts of the South Kawishiwi and Partridge River Intrusions appear to represent the effects of frequent magma recharge coupled with in situ (or boundary layer) crystallization though other interpretations have been proposed. Extensive Cu-Ni sulphide mineralization at the base of these intrusions is attributed to country-rock contamination of the earliest intruded magmas. The cyclical progression of cumulates in the Layered Series at Duluth, wherein cumulus augite and oxide arrived nearly simultaneously, formed in a moderately open system characterized by periodic eruption and recharge. The Wilder Lake Intrusion is different from other intrusions in that cumulus ilmenite appears before augite and that olivine and augite composition define an inverted cryptic variation. The latter phenomenon may be related to a strong upward gradation toward lesser amounts of trapped liquid in the cumulates. Finally, the incomplete cumulate stratigraphy of the Bald Eagle Intrusion, which is composed of approximately equal thicknesses of troctolite (PO) and gabbro (PAO) adcumulates, is unique in that Fe-Ti oxide did not arrive as a cumulus phase despite prolonged crystallization of cumulus augite. These different cumulus parageneses probably produced a variety of derivative magmas, which may have contributed in part to the compositional diversity of the Midcontinent rift volcanics.

Developments in Petrology↗

USGS2011

Compositional zonation and cumulus processes in the Mount Mazama magma chamber, Crater Lake, Oregon

The 6845 ± 50 BP climactic eruption of Mount Mazama discharged 47 ± 9 km 3 of vertically zoned calc-alkaline magma, affording a virtually complete section through the chamber. Evidence for two andesitic parents with different trace-element (particularly Sr) and water contents is preserved in the ejecta. Prior to eruption, a dominant volume of rhyodacite was underlain successively by high-Sr andesite, high-Sr crystal mushes, and low-Sr crystal mushes. Intergranular liquids in the high-Sr magmas were probably richer in water than those in the low-Sr magmas. Thermal continuity throughout the ejecta favours eruption from a single, zoned reservoir. Insight into chamber development is given by preclimactic rhyodacitic lavas and tephra erupted between about 30,000 BP and the climactic eruption. The oldest of these lavas, contaminated derivatives of low-Sr magma, contain crystal-poor magmatic inclusions of low-Sr andesite; the youngest has inclusions of high-Sr andesite and, like rhyodacitic pumice in the climactic ejecta, is hybrid magma containing an admixed high-Sr component. A model for steady-state growth of the chamber is inferred whereby repeated recharge, first by low-Sr then high-Sr andesite (± basalt), builds up a cumulate succession, while derivative liquid fractionates convectively, segregates, and mixes with an incrementally growing silicic volume. The magma chamber at Mount Mazama may provide insight into the evolution of some granitoid plutons.

Oregon↗