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At least 775 records · Page 43Linked to original sources

Opposing resonses to ecological gradients structure amphibian and reptile communities across a temperate grassland-savanna-forest landscape

Temperate savannas are threatened across the globe. If we prioritize savanna restoration, we should ask how savanna animal communities differ from communities in related open habitats and forests. We documented distribution of amphibian and reptile species across an open-savanna–forest gradient in the Midwest U.S. to determine how fire history and habitat structure affected herpetofaunal community composition. The transition from open habitats to forests was a transition from higher reptile abundance to higher amphibian abundance and the intermediate savanna landscape supported the most species overall. These differences warn against assuming that amphibian and reptile communities will have similar ecological responses to habitat structure. Richness and abundance also often responded in opposite directions to some habitat characteristics, such as cover of bare ground or litter. Herpetofaunal community species composition changed along a fire gradient from infrequent and recent fires to frequent but less recent fires. Nearby (200-m) wetland cover was relatively unimportant in predicting overall herpetofaunal community composition while fire history and fire-related canopy and ground cover were more important predictors of composition, diversity, and abundance. Increased developed cover was negatively related to richness and abundance. This indicates the importance of fire history and fire related landscape characteristics, and the negative effects of development, in shaping the upland herpetofaunal community along the native grassland–forest continuum.

Indiana↗

Optimization of nested polymerase chain reaction assays for identification of Aeromonas salmonicida, Yersinia ruckeri and Flavobacterium psychrophilum

Nested polymerase chain reaction (PCR) assays were developed using first-round primers complementary to highly conserved regions within the bacterial 16S ribosomal RNA (rRNA) gene (universal eubacterial primers) and second-round primers specific for sequences within the 16S rRNA genes of Aeromonas salmonicida , Yersinia ruckeri , and Flavobacterium psychrophilum . Following optimization of the MgCl 2 concentration and primer annealing temperature, PCR employing the universal eubacterial primers was used to amplify a 1,500-base-pair (bp) product visible in agarose gels stained with ethidium bromide. The calculated detection limit of this single-round assay was less than 1.4 × 10 4 colony-forming units (CFU) per reaction for all bacterial species tested. Single-round PCR using primer sets specific for A. salmonicida , Y. ruckeri , and F. psychrophilum amplified bands of 271, 575, and 1,100 bp, respectively, with detection limits of less than 1.4 × 10 4 , 1.4 × 10 5 , and 1.4 × 10 5 CFU per reaction. Using the universal eubacterial primers in the first round and the species-specific primer sets in the second round of nested PCR assays improved the detection ability by approximately four orders of magnitude to fewer than 14 CFU per sample for each of the three bacterial species. Such nested assays could be adapted to a wide variety of bacterial fish pathogens for which 16S sequences are available.

Journal of Aquatic Animal Health↗

Extreme drought and adaptive resource selection by a desert mammal

When animals select areas to occupy, decisions involve trade-offs between the fitness benefits of obtaining critical resources and minimizing costs of biotic and abiotic factors that constrain their use. These processes can be more dynamic and complex for species inhabiting desert environments, where highly variable spatial and temporal distribution of precipitation can create high intra- and inter-annual variability in forage conditions and water availability, and thermal constraints can differ significantly among seasons and diel periods. We examined resource selection in desert bighorn sheep ( Ovis canadensis mexicana ) in Cabeza Prieta National Wildlife Refuge, Arizona, USA, at multiple spatial and temporal scales to gain insight into how a desert mammal responds to variations in climatic conditions. We used resource selection functions to test topographic, forage, and environmental features among seasons and diel periods, and between non-drought and drought conditions at the population and home-range scale. When precipitation was average, sheep selected for topographic features that were beneficial for predator avoidance (i.e., escape terrain—steep, rugged areas with high visibility) and locations near perennial water. When drought occurred, they ranged further from preferred escape terrain and perennial water, perhaps seeking forage conditions suitable to meet their nutritional requirements. On early (April–June) and late (July–September) summer days, sheep selected for more northerly aspects and locations with lower solar radiation, and in some periods, selection for these cooler areas coincided with periods when forage covariates, proximity to perennial water, and several topographic features were uninformative in resource selection models. These choices may be necessary trade-offs, foregoing good escape terrain and foraging areas, and access to water, for improved thermoregulation. This study highlights the importance of identifying resource selection at variable spatial and temporal scales when investigating the interrelationship between species and their environment. It provides insight into the dynamics of resource selection in desert mammals, and how they respond to constraints imposed on them by their environment. This work can serve to inform strategies for managing and conserving species living in arid environments when faced with climate change.

Arizona↗

Valuation of rangeland ecosystem services

Economic valuation lends itself well to the anthropocentric orientation of ecosystem services. An economic perspective on ecosystems portrays them as natural assets providing a flow of goods and services valuable to individuals and society collectively. A few examples include the purification of drinking water, reduced risk from flooding and other extreme events, pollination of agricultural crops, climate regulation, and recreation opportunities from plant and animal habitat maintenance, among many others. Once these goods and services are identified and quantified, they can be monetized to complete the valuation process. The monetization of ecosystem goods and services (in the form of dollars) provides a common metric that allows for cross-comparison of attributes and evaluation of differing ecological scenarios. Complicating the monetization process is the fact that most of these goods and services are public and non-market in nature; meaning they are non-rival and non-exclusive and are typically not sold in a traditional market setting where monetary values are revealed. Instead, one must employ non-market valuation techniques, with primary valuation methods typically being very time and resource consuming, intimidating to non-economists, and often impractical. For these reasons, benefit transfer methods have gained popularity. This methodology harnesses the primary collection results of existing studies to make inferences about the economic values of non-market goods and services at an alternative policy site (in place and/or in time). For instance, if a primary valuation study on oak reestablishment on rangelands in southern California yielded a value of $30 per-acre associated with water regulation, this result can be transferred, with some adjustments, to say something about the value of an acre of oaks on rangelands in northern portions of the state. The economic valuation of rangeland ecosystem services has many roles. Economic values may be used as input into analyzing the costs and benefits associated with policies being proposed, or possibly already implemented. For example, with monetized values acting as a common metric, one could compare the 'benefits' of converting a rangeland ecosystem for commercial development (perhaps estimated at the market value of the developed land) with the foregone ecosystem service values (in addition to any land income lost) resulting from that land conversion. Similarly, ecosystem service values can be used to determine the level of return on an investment. rhis is a primary objective for private land conservation organizations who typically have very limited resources. Ecosystem service valuation can also have a role in damage assessments from incidents that require compensation such as oil spills. Additionally, valuation can be very informative when investigating regulatory programs that trade ecological assets such as wetland mitigation programs. Typically these programs are based simply on an 'acre for acre' criterion, and do not take into consideration varying welfare values associated with that ecosystem. Lastly, and most fundamental, ecosystem service valuation serves as a recognition tool for people of all backgrounds. Identifying and valuing ecosystem goods and services on rangelands brings to light the value these natural assets have to human welfare that often remain hidden do to their public and non-market attributes. This type of recognition is vital to the preservation of rangeland ecosystems in the future and the many ecological benefits they provide.

Conference Paper↗

Trends in suspended-sediment concentration at selected stream sites in Kansas, 1970–2002

Knowledge of erosion, transport, and deposition of sediment relative to streams and impoundments is important to those involved directly or indirectly in the development and management of water resources. Monitoring the quantity of sediment in streams and impoundments is important because: (1) sediment may degrade the water quality of streams for such uses as municipal water supply, (2) sediment is detrimental to the health of some species of aquatic animals and plants, and (3) accumulation of sediment in water-supply impoundments decreases the amount of storage and, therefore, water available for users. One of the objectives of the Kansas Water Plan is to reduce the amount of sediment in Kansas streams by 2010. During the last 30 years, millions of dollars have been spent in Kansas watersheds to reduce sediment transport to streams. Because the last evaluation of trends in suspended-sediment concentrations in Kansas was completed in 1985, 14 sediment sampling sites that represent 10 of the 12 major river basins in Kansas were reestablished in 2000. The purpose of this report is to present the results of time-trend analyses at the reestablished sediment data-collection sites for the period of about 1970–2002 and to evaluate changes in the watersheds that may explain the trends. Time-trend tests for 13 of 14 sediment sampling sites in Kansas for the period from about 1970 to 2002 indicated that 3 of the 13 sites tested had statistically significant decreasing suspended-sediment concentrations; however, only 2 sites, Walnut River at Winfield and Elk River at Elk Falls, had trends that were statistically significant at the 0.05 probability level. Increasing suspended-sediment concentrations were indicated at three sites although none were statistically significant at the 0.05 probability level. Samples from five of the six sampling sites located upstream from reservoirs indicated decreasing suspended-sediment concentrations. Watershed impoundments located in the respective river basins may contribute to the decreasing suspended-sediment trends exhibited at most of the sampling sites because the impoundments are designed to trap sediment. Both sites that exhibited statistically significant decreasing suspended-sediment concentrations have a large number of watershed impoundments located in their respective drainage basins. The relation between percentage of the watershed affected by impoundments and trend in suspended-sediment concentration for 11 sites indicated that, as the number of impoundments in the watershed increases, suspended-sediment concentration decreases. Other conservation practices, such as terracing of farm fields and contour farming, also may contribute to the reduced suspended-sediment concentrations if their use has increased during the period of analysis. Regression models were developed for 13 of 14 sediment sampling sites in Kansas and can be used to estimate suspended-sediment concentration if the range in stream discharge for which they were developed is not exceeded and if time trends in suspended-sediment concentrations are not significant. For those sites that had a statistically significant trend in suspended-sediment concentration, a second regression model was developed using samples collected during 2000–02. Past and current studies by the U.S. Geological Survey have shown that regression models can be developed between in-stream measurements of turbidity and laboratory-analyzed sediment samples. Regression models were developed for the relations between discharge and suspended-sediment concentration and turbidity and suspended-sediment concentration for 10 sediment sampling sites using samples collected during 2000–02.

Kansas↗

Environmental drivers of productivity explain population patterns of an Arctic-nesting goose across a half-century

Joint estimation of demographic rates and population size has become an essential tool in ecology because it enables evaluating mechanisms for population change and testing hypotheses about drivers of demography in a single modeling framework. This approach provides a comprehensive perspective on population dynamics and how animal populations will respond to global pressures in future years. However, long-term data for such analyses are often limited in quantity and quality. We developed an integrated population model combining data on demography and population size from nine different sources to understand the population ecology of the lesser snow goose ( Anser caerulescens caerulescens ) in the Pacific Flyway in North America from 1970 to 2022. We divided the flyway population into Wrangel Island and Western Arctic subpopulations and assessed demographic mechanisms for population change and environmental and anthropogenic drivers that influenced demography. During 1970–2022, the estimated spring population of snow geese in the Pacific Flyway increased from ~300,000 to ~2,300,000. Short-term changes in population growth rate were primarily driven by changes in productivity in the Western Arctic and productivity and immigration in Wrangel Island. Changes in hunting and natural mortality had less influence on short-term but likely contributed to the pronounced long-term population growth. Early snowmelt positively influenced per capita productivity in both regions, and warm, rainy weather during the non-breeding season was associated with high per capita productivity in the Western Arctic. In the Western Arctic, per capita productivity was negatively associated with population size, and adult natural mortality was positively associated with population size, indicating density-dependent regulation in this subpopulation. In Wrangel Island, warm weather in early fall decreased juvenile natural mortality. Our results demonstrate that per capita productivity and immigration, rather than adult survival, were the primary mechanisms of short-term population change in this long-lived species. Our results also indicate that environmental conditions and density-dependent effects can impact population dynamics more than harvest, even for a long-lived, commonly harvested species. We demonstrate that a warming climate can have multiple effects on demography, emphasizing the importance of assessing a variety of spatial and temporal factors when predicting how populations might respond to large-scale environmental changes. This emphasizes the importance of conservation plans that consider these environmental drivers, although this may complicate direct management of such populations.

Ecological Applications↗

Non-target effects of herbicides on the Zerene silverspot butterfly, a surrogate subspecies for the threatened Oregon silverspot butterfly

Herbicides are used as management tools to improve habitat for native plants and animals, but their application may also have harmful effects on the native community. The federally threatened Oregon silverspot butterfly ( Speyeria = Argynnis zerene hippolyta ) resides in remnant native grasslands along the Pacific Northwest coast. However, like many grasslands, many of these areas have high incidences of invasive plants, such as false dandelion ( Hypochaeris radicata ) and velvet grass ( Holcus lanatus ). These and other invasive plants severely limit the abundance of the Oregon silverspot’s larval host plant, the early blue violet ( Viola adunca ). Selective herbicides, such as clopyralid and fluazifop-P-butyl, can reduce invasive plant abundance. However, non-target effects of these herbicides, and of adjuvants applied with these herbicides, on Oregon silverspots are unknown. In our study, we applied herbicides and adjuvants to host plants and Zerene silverspot ( S. z. zerene ) larvae, a subspecies closely related to Oregon silverspots. Responses in silverspot larvae measured in two experiments included survival, sex ratio, development time, mass, morphology, fecundity, and behavior. Our results suggest that negative effects of herbicides, clopyralid and fluazifop-P-butyl, and adjuvants, Agri-Dex ® and Nu-Film ® -IR, are limited. However, we detected weak effects from clopyralid and fluazifop-P-butyl with and without Agri-Dex ® on larval and pupal development time and pupal mass.

Journal of Insect Conservation↗

The changing dynamics of highly pathogenic avian influenza H5N1: Next steps for management & science in North America

Highly pathogenic avian influenza virus (HPAIV) H5N1 was introduced in North America in late 2021 through trans-Atlantic pathways via migratory birds. These introductions have resulted in an unprecedented epizootic, a widespread disease event in animals, heavily affecting poultry, wild birds, and recently mammals. The North American incursions occurred during the largest epidemic season (2021–2022) in Europe where H5N1 may now be endemic (i.e., continuously present). The continuing outbreak includes expansion into Mexico, Central and South America beginning in late 2022. Here, we provide an overview of the Eurasian origin H5N1 introduction to the Americas, including a significant shift in virus dynamics and severe disease in wild birds. Then, to investigate the global changes in confirmed detections in wild birds and poultry across time and geographic regions, we analyzed FAO's EMPRES-i + database. To examine the 2021 introduction and spread in North American wild birds and poultry, we collated publicly available data across USA and Canadian federal sources. Based on our assessment, the unique magnitude of the North American H5N1 spread indicates the need for effective decision framing to prioritize management needs and scientific inquiry, particularly for species at risk and interface areas for wildlife, poultry, and humans. We illustrate the rapidly occurring and likely increasing detrimental effects that this One Health issue has on wildlife, agriculture, and potentially human health, and we offer a reframing of HPAIV disease response towards a decision analytical context to guide scientific prioritization as a potentially valuable change in focus.

Biological Conservation↗

Connectivity among subpopulations of Louisiana black bears as estimated by a step selection function

Habitat fragmentation is a fundamental cause of population decline and increased risk of extinction for many wildlife species; animals with large home ranges and small population sizes are particularly sensitive. The Louisiana black bear ( Ursus americanus luteolus ) exists only in small, isolated subpopulations as a result of land clearing for agriculture, but the relative potential for inter-subpopulation movement by Louisiana black bears has not been quantified, nor have characteristics of effective travel routes between habitat fragments been identified. We placed and monitored global positioning system (GPS) radio collars on 8 female and 23 male bears located in 4 subpopulations in Louisiana, which included a reintroduced subpopulation located between 2 of the remnant subpopulations. We compared characteristics of sequential radiolocations of bears (i.e., steps) with steps that were possible but not chosen by the bears to develop step selection function models based on conditional logistic regression. The probability of a step being selected by a bear increased as the distance to natural land cover and agriculture at the end of the step decreased and as distance from roads at the end of a step increased. To characterize connectivity among subpopulations, we used the step selection models to create 4,000 hypothetical correlated random walks for each subpopulation representing potential dispersal events to estimate the proportion that intersected adjacent subpopulations (hereafter referred to as successful dispersals). Based on the models, movement paths for males intersected all adjacent subpopulations but paths for females intersected only the most proximate subpopulations. Cross-validation and genetic and independent observation data supported our findings. Our models also revealed that successful dispersals were facilitated by a reintroduced population located between 2 distant subpopulations. Successful dispersals for males were dependent on natural land cover in private ownership. The addition of hypothetical 1,000-m- or 3,000-m-wide corridors between the 4 study areas had minimal effects on connectivity among subpopulations. For females, our model suggested that habitat between subpopulations would probably have to be permanently occupied for demographic rescue to occur. Thus, the establishment of stepping-stone populations, such as the reintroduced population that we studied, may be a more effective conservation measure than long corridors without a population presence in between.

Louisiana↗

Feeding habits of sympatric aoudad (Ammotragus lervia) and desert bighorn sheep (Ovis canadensis mexicana) in West Texas

Aoudad ( Ammotragus lervia ), native to northern Africa, were introduced as exotic game animals to the Chihuahuan Desert in West Texas, USA, and have become invasive. Aoudad and bighorn sheep ( Ovis canadensis mexicana ) are adapted to rugged terrain in arid climates, and both persist in desert regions with low primary productivity and limited perennial water availability, which suggests potential for competition for food and water resources. Aoudad are highly adaptable, which could make them more resilient to a changing environment with extreme conditions, providing a competitive edge over bighorn sheep. To evaluate the potential for exploitative competition between invasive aoudad and endemic desert bighorn sheep, we used genetic metabarcoding to assess diet composition using fecal samples collected from adults of each species in the Sierra Vieja Mountains in West Texas. We collected 32 composite samples from aoudad and 27 composite samples for bighorn sheep and identified 88 genera consumed. Bighorn sheep and aoudad diets (as inferred by genera) were most different during the warm-wet season (16 June–15 October; Kulczynski similarity index = 0.81) and most similar during the warm-dry season (16 February–15 June; Kulczynski similarity index = 1.05). During the warm-wet season, the 2 herbivores tended to consume different genera, suggesting the possibility of resource partitioning, with less likelihood of resource partitioning during the warm-dry season when forage was more limited and diets were similar. Diet diversity, measured by Shannon's diversity index, did not vary substantially between species, but for aoudad it was highest during the warm-wet season (1.1 ± 0.0.1 [SE]) and lowest during the cool-dry season (16 October–15 February, 0.9 ± 0.0.1). For bighorn sheep, diet richness was highest during the cool-dry season (1.1 ± 0.2) and lowest during the warm-dry season (0.8 ± 0.10). Bighorn sheep may specialize on high-quality forage species, particularly during the warm-wet season, while aoudad have a more generalist foraging strategy, although temporal windows for increased competition for food resources likely occur. Aoudad are well-adapted to low-quality forage and arid climates, which could increase their competitive ability and compromise bighorn sheep conservation efforts in areas of sympatry.

Texas↗

Crocodylus acutus (American Crocodile). Long distance juvenile movement

Crocodylus acutus (American Crocodile) is the most widely distributed New World crocodilian species with its range extending from Peru in the south to the southern tip of peninsular Florida in the north. Crocodylus acutus occupies primarily coastal brackish water habitat, however it also occurs in freshwater to hypersaline habitats (Thorbjarnarson 2010. In Crocodiles. Status Survey and Conservation Action Plan. [Third Edition], American Crocodile Crocodylus acutus, pp. 46–53 S.C. Manolis and C. Stevenson. Crocodile Specialist Group, Darwin). There is limited literature on long distance movements of juvenile crocodilians worldwide and no literature on juvenile crocodiles in Florida. However, adult C. acutus in Florida have been documented to make seasonal movements of 5–15 km from preferred foraging habitat to nesting beaches (Mazzotti 1983. The Ecology of Crocodylus acutus in Florida. PhD Dissertation. The Pennsylvania State University, University Park, Pennsylvania. 161pp), and one adult was documented making a 35 km trip from her nest site to preferred foraging habitat (Cherkiss et. al. 2006. Herpetol. Rev. 38:72–73). Rodda (1984. Herpetologica 40:444–451) reported on juvenile C. acutus movement in Gatun Lake, Panama, and found that juveniles stayed within 1 km of their nest site for the first month. Movements of juvenile Crocodylus porosus (Saltwater Crocodile) in a river system in Northern Australia showed a maximum movement of 38.9 km from a known nest site, with the majority of the crocodiles staying within 15.6 km downstream to 6.8 km upstream (Webb and Messel 1978. Aust. Wildlife Res. 5:263–283). Juvenile movement of Crocodylus niloticus (Nile Crocodile) in Lake Ngezi, Zimbabwe showed crocodiles restricted their movements from 1.0 km up to 4.5 km through the wet and dry seasons (Hutton 1989. Am. Zool. 29:1033–1049). Long distance movements of alligators were recorded for sizes ranging from 28 cm to 361 cm in a coastal refuge in Louisiana, where the distance traveled ranged from 0.3 km to 90.2 km. The data showed that the smaller alligators moved greater distance than larger ones (Lance et al. 2011. Southeast Nat. 10:389–398). An ongoing 30 year mark and recapture study for Crocodylus acutus in Florida allowed us to look at long distance movement (>30 km) of juveniles (30km). Initial and most recent captures as a juvenile were used to analyze distances moved (Fig. 1). These distances were measured linearly between capture locations. Maximum linear distances of 76.3 km and 69.6 km were recorded for animals 4838 and 6662. All crocodiles moved from nesting habitat through potentially optimal nursery habitat prior to reaching their recapture locations. These juvenile long distance movements could be due to larger crocodiles facilitating their dispersal from the nest location (Lance et al. 2011. op. cit.). These data (Table 1.) support that there is exchange of individuals among the nesting colonies and our ongoing efforts to monitor this threatened species allow us to make observations of how juvenile crocodiles are moving throughout the landscape in an ecosystem currently undergoing restoration.

Herpetological Review↗

Island of misfit tortoises: Waif gopher tortoise health assessment following translocation

Translocation, the intentional movement of animals from one location to another, is a common management practice for the gopher tortoise ( Gopherus polyphemus ). Although the inadvertent spread of pathogens is a concern with any translocation effort, waif tortoises—individuals that have been collected illegally, injured and rehabilitated or have unknown origins—are generally excluded from translocation efforts due to heightened concerns of introducing pathogens and subsequent disease to naïve populations. However, repurposing these long-lived animals for species recovery is desirable when feasible, and introducing waif tortoises may bolster small populations facing extirpation. The objective of this study was to assess the health of waif tortoises experimentally released at an isolated preserve in Aiken County, SC, USA. Our assessments included visual examination, screening for 14 pathogens using conventional or quantitative polymerase chain reaction (qPCR) and haematological evaluation. Of the 143 individuals assessed in 2017 and 2018, most individuals (76%; n = 109 of 143) had no overt clinical evidence of disease and, when observed, clinical findings were mild. In both years, we detected two known tortoise pathogens, Mycoplasma agassizii and Mycoplasma testudineum , at a prevalence of 10.2–13.9% and 0.0–0.8%, respectively. Additionally, we found emydid Mycoplasma , a bacterium commonly found in box turtles ( Terrapene spp . ), in a single tortoise that showed no clinical evidence of infection. The presence of nasal discharge was an important, but imperfect, predictor of Mycoplasma spp. infection in translocated tortoises. Hemogram data were comparable with wild populations. Our study is the first comprehensive effort to assess pathogen prevalence and hemogram data of waif gopher tortoises following translocation. Although caution is warranted and pathogen screening necessary, waif tortoises may be an important resource for establishing or augmenting isolated populations when potential health risks can be managed.

Conservation Physiology↗

Using passive integrated transponder (PIT) systems for terrestrial detection of blue-spotted salamanders (Ambystoma laterale) in situ

Pure-diploid Blue-spotted Salamanders ( Ambystoma laterale ) are the smallest members of the family Ambystomatidae which makes tracking with radio-transmitters difficult because of small battery capacity. Passive integrated transponder (PIT) tags provide another tracking approach for small fossorial animals such as salamanders. We evaluated the use of portable PIT tag readers (PIT packs) to detect PIT tag-implanted pure-diploid Blue-spotted Salamanders in situ. We also examined the detection probability of salamanders with PIT tags held in enclosures in wetland and terrestrial habitats, as well as the underground detection range of PIT packs by scanning for buried tags not implanted into salamanders. Of the 532 PIT tagged salamanders, we detected 6.84% at least once during scanning surveys. We scanned systematically within a 13.37 ha area surrounding a salamander breeding pool on 34 occasions (~119 hours of survey time) and detected PIT tags 74 times. We detected 55% of PITs in tagged salamanders and 45%were expelled tags. We were able to reliably detect buried PIT tags from 1–22cm below the ground surface. Because nearly half the locations represented expelled tags, our data suggest this technique is inappropriate for future studies of pure-diploid Blue-spotted Salamanders, although it may be suitable for polyploid Blue-spotted Salamanders and other ambystomatid species, which are larger in size and may exhibit higher tag retention rates. It may also be prudent to conduct long-term tag retention studies in captivity before tagging and releasing salamanders for in situ study, and to double-mark individuals.

Herpetological Conservation and Biology↗

Biological diversity of a temporary pond herpetofauna in north Florida sandhills

From 1985 through 1990, the herpetofauna of a temporary pond in an uplands longleaf pine sandhills community in north-central Florida was monitored. A drift fence completely encircled the pond. Animals were captured in pitfall traps and marked as they entered and exited the pond basin. I captured 16 155 individuals of 42 species (16 amphibians, 26 reptiles). The species richness, diversity (using Margalef's Diversity Index) and dominance (using the Berger-Parker Index) varied among years. Between 62.5% and 87.5% of the amphibian species and 65% to 81% of the reptile species were captured in any one year. Daily amphibian capture was positively correlated with rainfall, whereas reptile capture was either not correlated or weakly negatively correlated with rainfall. Hydroperiod duration was not correlated with the numbers of either amphibians or reptiles captured. Neither the amphibian nor the reptile community showed any trends in diversity or dominance indices during the course of the study, although both communities were dominated by a few species. However, the species responsible for community dominance changed somewhat as the study progressed. Assessing the results of this study is hampered by the lack of comparable studies elsewhere, expected natural fluctuations of amphibian populations, and a prolonged drought, especially during the latter stages of the study. The herpetological community at Breezeway Pond does not appear to follow theoretical predictions of community response to stress. Temporary ponds are important centres of herpetofaunal biodiversity in uplands sandhills communities. Long-term studies are needed to monitor the composition, structure, and functional interactions of their resident species.

Biodiversity and Conservation↗

Mortality monitoring design for utility-scale solar power facilities

Introduction Solar power represents an important and rapidly expanding component of the renewable energy portfolio of the United States (Lovich and Ennen, 2011; Hernandez and others, 2014). Understanding the impacts of renewable energy development on wildlife is a priority for the U.S. Fish and Wildlife Service (FWS) in compliance with Department of Interior Order No. 3285 (U.S. Department of the Interior, 2009) to “develop best management practices for renewable energy and transmission projects on the public lands to ensure the most environmentally responsible development and delivery of renewable energy.” Recent studies examining effects of renewable energy development on mortality of migratory birds have primarily focused on wind energy (California Energy Commission and California Department of Fish and Game, 2007), and in 2012 the FWS published guidance for addressing wildlife conservation concerns at all stages of land-based wind energy development (U.S. Fish and Wildlife Service, 2012). As yet, no similar guidelines exist for solar development, and no published studies have directly addressed the methodology needed to accurately estimate mortality of birds and bats at solar facilities. In the absence of such guidelines, ad hoc methodologies applied to solar energy projects may lead to estimates of wildlife mortality rates that are insufficiently accurate and precise to meaningfully inform conversations regarding unintended consequences of this energy source and management decisions to mitigate impacts. Although significant advances in monitoring protocols for wind facilities have been made in recent years, there remains a need to provide consistent guidance and study design to quantify mortality of bats, and resident and migrating birds at solar power facilities (Walston and others, 2015). In this document, we suggest methods for mortality monitoring at solar facilities that are based on current methods used at wind power facilities but adapted for the unique conditions encountered at solar facilities. In particular, unlike at wind-power facilities, the unimpeded access to almost all areas within the facilities, the typically flat terrain, and general absence of thick vegetation allow distance-sampling techniques (Buckland and others, 2001, 2004) to be exploited to advantage at industrial solar sites. These protocols build on the work of Nicolai and others (2011), and as our understanding and techniques for monitoring improve, the methods may be further modified to incorporate improvements in the future. We present case studies based on monitoring methods currently implemented at different utility-scale solar facilities to illustrate how distance-sampling techniques may improve overall detectability without substantially increasing costs. Every facility is unique, and the protocols presented may be adapted based on specific monitoring objectives and conditions at each site. We provide guidance for designing monitoring programs whose objective it is to estimate the total number of bird and bat fatalities occurring at a facility over an extended period of time. We address spatial variation in causes of mortality, as well as potential sources of imperfect detection, for example, animals falling in or moving to unsearched areas, carcasses removed by predators, and carcasses missed by searchers. We suggest methods to estimate and account for each source of imperfect detection. This document focuses on monitoring design only and does not discuss approaches for estimating mortality from collected data. The development of statistically sound estimators relevant to the solar context is a current topic of research, although there are already strong foundations for estimation with distance-sampling methods in similar open, arid environments (Anderson and others, 2001; Freilich and others, 2005). Nonetheless, if protocols described in this document are followed, the resulting data will be adequate and sufficient for estimating mortality using newly formulated estimators.

Open-File Report↗

Hierarchical distance-sampling models to estimate population size and habitat-specific abundance of an island endemic

Population size and habitat-specific abundance estimates are essential for conservation management. A major impediment to obtaining such estimates is that few statistical models are able to simultaneously account for both spatial variation in abundance and heterogeneity in detection probability, and still be amenable to large-scale applications. The hierarchical distance-sampling model of J. A. Royle, D. K. Dawson, and S. Bates provides a practical solution. Here, we extend this model to estimate habitat-specific abundance and rangewide population size of a bird species of management concern, the Island Scrub-Jay ( Aphelocoma insularis ), which occurs solely on Santa Cruz Island, California, USA. We surveyed 307 randomly selected, 300 m diameter, point locations throughout the 250-km 2 island during October 2008 and April 2009. Population size was estimated to be 2267 (95% CI 1613-3007) and 1705 (1212-2369) during the fall and spring respectively, considerably lower than a previously published but statistically problematic estimate of 12 500. This large discrepancy emphasizes the importance of proper survey design and analysis for obtaining reliable information for management decisions. Jays were most abundant in low-elevation chaparral habitat; the detection function depended primarily on the percent cover of chaparral and forest within count circles. Vegetation change on the island has been dramatic in recent decades, due to release from herbivory following the eradication of feral sheep ( Ovis aries ) from the majority of the island in the mid-1980s. We applied best-fit fall and spring models of habitat-specific jay abundance to a vegetation map from 1985, and estimated the population size of A. insularis was 1400-1500 at that time. The 20-30% increase in the jay population suggests that the species has benefited from the recovery of native vegetation since sheep removal. Nevertheless, this jay's tiny range and small population size make it vulnerable to natural disasters and to habitat alteration related to climate change. Our results demonstrate that hierarchical distance-sampling models hold promise for estimating population size and spatial density variation at large scales. Our statistical methods have been incorporated into the R package unmarked to facilitate their use by animal ecologists, and we provide annotated code in the Supplement.

California↗

Submarine ground-water discharge and fate along the coast of Kaloko-Honokohau National Historical Park, Island of Hawai'i: Part 2, spatial and temporal variations in salinity, radium-isotope activity, and nutrient concentrations in coastal waters, December 2003 - April 2006

The aquatic resources of Kaloko-Honokohau National Historical Park, including rocky shoreline, fishponds, and anchialine pools, provide habitat to numerous plant and animal species and offer recreational opportunities to local residents and tourists. A considerable amount of submarine groundwater discharge was known to occur in the park, and this discharge was suspected to influence the park's water quality. Thus, the goal of this study was to characterize spatial and temporal variations in the quality and quantity of groundwater discharge in the park. Samples were collected in December 2003, November 2005, and April 2006 from the coastal ocean, beach pits, three park observation wells, anchialine pools, fishponds, and Honokohau Harbor. The activities of two Ra isotopes commonly used as natural ground-water tracers (223Ra and 224Ra), salinity, and nutrient concentrations were measured. Fresh ground water composed a significant proportion (8-47 volume percent) of coastal-ocean water. This percentage varied widely between study sites, indicating significant spatial variation in submarine groundwater discharge at small (meter to kilometer) scales. Nitrate + nitrite, phosphate, and silica concentrations were significantly higher in nearshore coastal-ocean samples relative to samples collected 1 km or more offshore, and linear regression showed that most of this difference was due to fresh ground-water discharge. High-Ra-isotope-activity, higher-salinity springs were a secondary source of nutrients, particularly phosphate, at Honokohau Harbor and Aiopio Fishtrap. Salinity, Ra-isotope activity, and nutrient concentrations appeared to vary in response to the daily tidal cycle, although little seasonal variation was observed, indicating that submarine ground-water discharge may buffer the park's water quality against the severe seasonal changes that would occur in a system where freshwater inputs were dominated by rivers and runoff. Ra-isotope-activity ratios indicated that the residence time of water in the coastal ocean at the study sites was less than 1.6 days. We calculated water and nutrient fluxes into the coastal ocean at each study site. This study provides a baseline description of submarine ground-water discharge in Kaloko-Honokohau National Historical Park and its effect on the park's aquatic resources. We hope that it will allow park managers to better assess potential future changes in ground-water quality and quantity and conserve the park's valuable resources.

Hawaii↗

Asynchronous movement patterns between breeding and stopover locations in a long-distance migratory songbird

The species-specific migratory patterns and strategies of many songbirds remain unknown or understudied, as research in animal ecology is biased toward the breeding period, with the fewest studies on the migratory period across taxa. Identifying large-scale spatiotemporal migratory patterns is challenging, as individuals within a species may vary in their migratory behavior and strategies. The Yellow Warbler ( Setophaga petechia ) is a Nearctic-Neotropical migrant that is relatively well studied during the breeding season, but its species-wide migratory patterns remain understudied. Our aim in studying Yellow Warbler movement ecology was to characterize temporal migration patterns during fall migration. We sought to determine the temporal migration pattern among breeding locations, as determined by the hydrogen stable isotope values in feather samples collected at disjunct (~2000 km) stopover sites in the Gulf of Maine (n = 50) and the Gulf of Mexico (n = 150). We used a similarity matrix to group individuals into a geographic cluster by breeding location, which was then used as the response variable in a modeling analysis. Our results provide evidence that Yellow Warblers exhibit an asynchronous, type 1 temporal migration pattern with southern breeding populations initiating migration prior to northern populations. Using hydrogen isotopes, we identified the temporal migration patterns between geographic clusters, representing an individual’s breeding location, and stopover sites along the Gulf of Maine and Gulf of Mexico, which fills a gap in understanding Yellow Warbler migration ecology.

Avian Conservation and Ecology↗