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USGS2010

Simulation of streamflow, evapotranspiration, and groundwater recharge in the lower San Antonio River Watershed, South-Central Texas, 2000-2007

The U.S. Geological Survey (USGS), in cooperation with the San Antonio River Authority, the Evergreen Underground Water Conservation District, and the Goliad County Groundwater Conservation District, configured, calibrated, and tested a watershed model for a study area consisting of about 2,150 square miles of the lower San Antonio River watershed in Bexar, Guadalupe, Wilson, Karnes, DeWitt, Goliad, Victoria, and Refugio Counties in south-central Texas. The model simulates streamflow, evapotranspiration (ET), and groundwater recharge using rainfall, potential ET, and upstream discharge data obtained from National Weather Service meteorological stations and USGS streamflow-gaging stations. Additional time-series inputs to the model include wastewater treatment-plant discharges, withdrawals for cropland irrigation, and estimated inflows from springs. Model simulations of streamflow, ET, and groundwater recharge were done for 2000-2007. Because of the complexity of the study area, the lower San Antonio River watershed was divided into four subwatersheds; separate HSPF models were developed for each subwatershed. Simulation of the overall study area involved running simulations of the three upstream models, then running the downstream model. The surficial geology was simplified as nine contiguous water-budget zones to meet model computational limitations and also to define zones for which ET, recharge, and other water-budget information would be output by the model. The model was calibrated and tested using streamflow data from 10 streamflow-gaging stations; additionally, simulated ET was compared with measured ET from a meteorological station west of the study area. The model calibration is considered very good; streamflow volumes were calibrated to within 10 percent of measured streamflow volumes. During 2000-2007, the estimated annual mean rainfall for the water-budget zones ranged from 33.7 to 38.5 inches per year; the estimated annual mean rainfall for the entire watershed was 34.3 inches. Using the HSPF model it was estimated that for 2000-2007, less than 10 percent of the annual mean rainfall on the study watershed exited the watershed as streamflow, whereas about 82 percent, or an average of 28.2 inches per year, exited the watershed as ET. Estimated annual mean groundwater recharge for the entire study area was 3.0 inches, or about 9 percent of annual mean rainfall. Estimated annual mean recharge was largest in water-budget zone 3, the zone where the Carrizo Sand outcrops. In water-budget zone 3, the estimated annual mean recharge was 5.1 inches or about 15 percent of annual mean rainfall. Estimated annual mean recharge was smallest in water-budget zone 6, about 1.1 inches or about 3 percent of annual mean rainfall. The Cibolo Creek subwatershed and the subwatershed of the San Antonio River upstream from Cibolo Creek had the largest and smallest basin yields, about 4.8 inches and 1.2 inches, respectively. Estimated annual ET and annual recharge generally increased with increasing annual rainfall. Also, ET was larger in zones 8 and 9, the most downstream zones in the watershed. Model limitations include possible errors related to model conceptualization and parameter variability, lack of data to quantify certain model inputs, and measurement errors. Uncertainty regarding the degree to which available rainfall data represent actual rainfall is potentially the most serious source of measurement error.

Texas↗

USGS2010

Simulation of Streamflow, Evapotranspiration, and Groundwater Recharge in the Lower San Antonio River Watershed, South-Central Texas, 2000-2007

Open-File Report↗

USGS2005

Studies of the Chesapeake Bay impact structure - Introduction and discussion

The late Eocene Chesapeake Bay impact structure on the Atlantic margin of Virginia is the largest known impact crater in the United States, and it may be the Earth's best preserved example of a large impact crater that formed on a predominantly siliciclastic continental shelf. The 85-kilometer-wide (53-milewide) crater also coincides with a region of saline ground water. It has a profound influence on ground-water quality and flow in an area of urban growth. The USGS-NASA Langley corehole at Hampton , Va., is the first in a series of new coreholes being drilled in the crater, and it is the first corehole to penetrate the entire crater-fill section and uppermost crystalline basement rock. The Langley corehole is located in the southwestern part of the crater's annular trough. A comprehensive effort to understand the crater's materials, architecture, geologic history , and formative processes, as well as its influence on ground water, includes the drilling of coreholes accompanied by high-resolution seismic-reflection and seismic-refraction surveys, audio-magnetotelluric surveys, and related multidisciplinary research. The studies of the core presented in this volume provide detailed information on the outer part of the crater, including the crystalline basement , the overlying impact -modified and impact -generated sediments (physical geology, paleontology, shocked minerals, and crystalline ejecta), and the upper Eocene to Quaternary postimpact sedimentary section (stratigraphy, paleontology, and paleoenvironments). The USGS-NASA Langley corehole has a total depth below land surface of 635.1 meters (m; 2,083.8 feet (ft)). The deepest unit in the corehole is the Neoproterozoic Langley Granite. The top of this granite at 626.3 m (2,054.7 ft) depth is overlain by 390.6 m (1,281.6 ft) of impact -modified and impact -generated siliciclastic sediments. These crater-fill materials are preserved beneath a 235.6-m-thick (773.12-ft-thick) blanket of postimpact sediments. A high-resolution seismic-reflection and seismic-refraction profile that crosses the Langley drill site is tied to the core by borehole geophysical logs, and it reveals the details of extensional collapse structures in the western annular trough. Electrical cross sections based on audio-magnetotelluric (AMT) soundings image a nearly vertical zone of high resistivity at the outer margin of the annular trough, possibly indicating fresh ground water at that location, and they show impedance trends that match the curvature of the structure . They also image the subsurface contact between conductive sediments and resistive crystalline basement , showing that the depth to crystalline basement is relatively constant in the western part of the annular trough. Chemical and isotopic data indicate that saline ground water of the Virginia inland saltwater wedge or bulge is a mixture of freshwater and seawater, and evidence for a mixing zone at the crater's outer margin supports the concept of differential flushing of residual seawater to create the bulge. Ground-water brine in the central part of the crater was produced by evaporation, and brine production from the heat of the impact is at least theoretically possible.

Chesapeake Bay↗

USGS2013

National wildlife refuge visitor survey 2012--Individual refuge results

The National Wildlife Refuge System (Refuge System), established in 1903 and managed by the U.S. Fish and Wildlife Service (Service), is the leading network of protected lands and waters in the world dedicated to the conservation of fish, wildlife and their habitats. There are 560 national wildlife refuges and 38 wetland management districts nationwide, encompassing more than 150 million acres. The Refuge System attracts nearly 45 million visitors annually, including 34.8 million people who observe and photograph wildlife, 9.6 million who hunt and fish, and nearly 675,000 teachers and students who use refuges as outdoor classrooms. Understanding visitor perceptions of refuges and characterizing their experiences on refuges are critical elements of managing these lands and meeting the goals of the Refuge System. The Service collaborated with the U.S. Geological Survey to conduct a national survey of visitors regarding their experiences on national wildlife refuges. The purpose of the survey was to better understand visitor experiences and trip characteristics, to gauge visitors’ levels of satisfaction with existing recreational opportunities, and to garner feedback to inform the design of programs and facilities. The survey results will inform performance, planning, budget, and communications goals. Results will also inform Comprehensive Conservation Plans (CCPs), visitor services, and transportation planning processes. This Data Series consists of 25 separate data files. Each file describes the results of the survey for an individual refuge and contains the following information: • Introduction: An overview of the Refuge System and the goals of the national surveying effort. • Methods: The procedures for the national surveying effort, including selecting refuges, developing the survey instrument, contacting visitors, and guidance for interpreting the results.• Refuge Description: A brief description of the refuge location, acreage, purpose, recreational activities, and visitation statistics, including a map (where available) and refuge website link. • Sampling at This Refuge: The sampling periods, locations, and response rate for the refuge. • Selected Survey Results: Key findings for the refuge, including: o Visitor and trip characteristics o Visitor spending in the local communities o Visitors opinions about the refuge o Visitor opinions about National Wildlife Refuge System topics • Conclusion • References Cited • Survey Frequencies (Appendix A): The survey instrument with frequency results for the refuge. • Visitor Comments (Appendix B): The verbatim responses to the open-ended survey questions for the refuge.Individual-refuge results for the 53 participating refuges in the 2010-2011 national effort are available at http://pubs.usgs.gov/ds/643/ as part of USGS Data Series 643. Combined results for the 53 participating refuges in the 2010-2011 national effort are available at http://pubs.usgs.gov/ds/685/ as part of USGS Data Series 685.

Data Series↗

USGS2004

Conceptualization and simulation of the Edwards aquifer, San Antonio region, Texas

A new numerical ground-water-flow model (Edwards aquifer model) that incorporates important components of the latest information and plausible conceptualization of the Edwards aquifer was developed. The model includes both the San Antonio and Barton Springs segments of the Edwards aquifer in the San Antonio region, Texas, and was calibrated for steady-state (1939–46) and transient (1947–2000) conditions, excluding Travis County. Transient simulations were conducted using monthly recharge and pumpage (withdrawal) data. The model incorporates conduits simulated as continuously connected (other than being separated in eastern Uvalde and southwestern Medina Counties), one-cell-wide (1,320 feet) zones with very large hydraulic-conductivity values (as much as 300,000 feet per day). The locations of the conduits were based on a number of factors, including major potentiometric-surface troughs in the aquifer, the presence of sinking streams, geochemical information, and geologic structures (for example, faults and grabens). The simulated directions of flow in the Edwards aquifer model are most strongly influenced by the presence of simulated conduits and barrier faults. The simulated flow in the Edwards aquifer is influenced by the locations of the simulated conduits, which tend to facilitate flow. The simulated subregional flow directions generally are toward the nearest conduit and subsequently along the conduits from the recharge zone into the confined zone and toward the major springs. Structures simulated in the Edwards aquifer model influencing groundwater flow that tend to restrict flow are barrier faults. The influence of simulated barrier faults on flow directions is most evident in northern Medina County. A water budget is an accounting of inflow to, outflow from, and storage change in the aquifer. For the Edwards aquifer model steady-state simulation, recharge (from seepage losses from streams and infiltration of rainfall) accounts for 93.5 percent of the sources of water to the Edwards aquifer, and inflow through the northern and northwestern model boundaries contributes 6.5 percent. The largest discharges are springflow (73.7 percent) and ground-water withdrawals by wells (25.7 percent). The principal source of water to the Edwards aquifer for the Edwards aquifer model transient simulation was recharge, constituting about 60 percent of the sources of water (excluding change in storage) to the Edwards aquifer during 1956, a drought period, and about 97 percent of the sources (excluding change in storage) during 1975, a period of above-normal rainfall and recharge. The principal discharges from the Edwards aquifer for the transient simulation were springflow and withdrawals by wells. During 1956, representing drought conditions, the change in storage (net water released from storage) was much greater than recharge, accounting for 75.9 percent of the total flow compared to 14.5 percent for recharge. Conversely, during 1975, representing above-normal rainfall and recharge conditions, recharge constituted 79.9 percent of the total flow, compared to 7.1 percent for the change in storage (net water added to storage). A series of sensitivity tests was made to ascertain how the model results were affected by variations greater than and less than the calibrated values of input data. Simulated hydraulic heads in the Edwards aquifer model were most sensitive to recharge, withdrawals, hydraulic conductivity of the conduit segments, and specific yield and were comparatively insensitive to spring-orifice conductance, northern boundary inflow, and specific storage. Simulated springflow in the Edwards aquifer model was most sensitive to recharge, withdrawals, hydraulic conductivity of the conduit segments, specific yield, and increases in northern boundary inflow and was comparatively insensitive to spring-orifice conductance and specific storage.

Texas↗

USGS2013

Hydrology and water quality of Shell Lake, Washburn County, Wisconsin, with special emphasis on the effects of diversion and changes in water level on the water quality of a shallow terminal lake

Shell Lake is a relatively shallow terminal lake (tributaries but no outlets) in northwestern Wisconsin that has experienced approximately 10 feet (ft) of water-level fluctuation over more than 70 years of record and extensive flooding of nearshore areas starting in the early 2000s. The City of Shell Lake (City) received a permit from the Wisconsin Department of Natural Resources in 2002 to divert water from the lake to a nearby river in order to lower water levels and reduce flooding. Previous studies suggested that water-level fluctuations were driven by long-term cycles in precipitation, evaporation, and runoff, although questions about the lake’s connection with the groundwater system remained. The permit required that the City evaluate assumptions about lake/groundwater interactions made in previous studies and evaluate the effects of the water diversion on water levels in Shell Lake and other nearby lakes. Therefore, a cooperative study between the City and U.S. Geological Survey (USGS) was initiated to improve the understanding of the hydrogeology of the area and evaluate potential effects of the diversion on water levels in Shell Lake, the surrounding groundwater system, and nearby lakes. Concerns over deteriorating water quality in the lake, possibly associated with changes in water level, prompted an additional cooperative project between the City and the USGS to evaluate efeffects of changes in nutrient loading associated with changes in water levels on the water quality of Shell Lake. Numerical models were used to evaluate how the hydrology and water quality responded to diversion of water from the lake and historical changes in the watershed. The groundwater-flow model MODFLOW was used to simulate groundwater movement in the area around Shell Lake, including groundwater/surface-water interactions. Simulated results from the MODFLOW model indicate that groundwater flows generally northward in the area around Shell Lake, with flow locally converging toward the lake. Total groundwater inflow to Shell Lake is small (approximately 5 percent of the water budget) compared with water entering the lake from precipitation (83 percent) and surface-water runoff (13 percent). The MODFLOW model also was used to simulate average annual hydrologic conditions from 1949 to 2009, including effects of the removal of 3 billion gallons of water during 2003–5. The maximum decline in simulated average annual water levels for Shell Lake due to the diversion alone was 3.3 ft at the end of the diversion process in 2005. Model simulations also indicate that although water level continued to decline through 2009 in response to local weather patterns (local drought), the effects of the diversion decreased after the diversion ceased; that is, after 4 years of recovery (2006–9), drawdown attributable to the diversion alone decreased by about 0.6 ft because of increased groundwater inflow and decreased lake-water outflow to groundwater caused by the artificially lower lake level. A delayed response in drawdown of less than 0.5 ft was transmitted through the groundwater-flow system to upgradient lakes. This relatively small effect on upgradient lakes is attributed in part to extensive layers of shallow clay that limit lake/groundwater interaction in the area. Data collected in the lake indicated that Shell Lake is polymictic (characterized by frequent deep mixing) and that its productivity is limited by the amount of phosphorus in the lake. The lake was typically classified as oligotrophic-mesotrophic in June, mesotrophic in July, and mesotrophic-eutrophic in August. In polymictic lakes like Shell Lake, phosphorus released from the sediments is not trapped near the bottom of the lake but is intermittently released to the shallow water, resulting in deteriorating water quality as summer progresses. Because the productivity of Shell Lake is limited by phosphorus, the sources of phosphorus to the lake were quantified, and the response in water quality to changes in phosphorus inputs were evaluated by means of eutrophication models. During 2009, the total input of phosphorus to Shell Lake was 1,730 pounds (lb), of which 1,320 lb came from external sources (76 percent) and 414 lb came from internal loading from sediments in the lake (24 percent). The largest external source was from surface-water runoff, which delivered about 52 percent of the total phosphorus load compared with about 13 percent of the water input. The second largest source was from precipitation (wetfall and dryfall), which delivered 19 percent of the load compared to about 83 percent of the water input. Contributions from septic systems and groundwater accounted for about 3 and 2 percent, respectively. Increased runoff raises water levels in the lake but does not necessarily increase phosphorus loading because phosphorus concentrations in the tributaries decline during increased flow, possibly because of shorter retention times in upstream wetlands. Phosphorus loading to the lake in 2009 represented what occurred after a series of dry years; therefore, this information was combined with data from 2011, a wet year, to estimate phosphorus loading during a range of hydrologic conditions by estimating loading from each component of the phosphorus budget for each year from 1949 to 2011. Comparisons of historical water-quality records with historical water levels and applications of a hydrodynamic model (Dynamic Lake Model, DLM) and empirical eutrophication models were used to understand how changes in water level and the coinciding changes in phosphorus loading affect the water quality of Shell Lake. DLM simulations indicate that large changes in water level (approximately 10 ft) affect the persistence of stratification in the lake. During periods with low water levels, the lake is a well-mixed, polymictic system, with water quality degrading slightly as summer progresses. During periods with high water levels, the lake is more stratified, and phosphorus from internal loading is trapped in the hypolimnion and released later in summer, which results in more extreme seasonality in water quality and better clarity in early summer. Results of eutrophication model simulations using a range in external phosphorus inputs illustrate how water quality in Shell Lake (phosphorus and chlorophyll a concentrations and Secchi depths) responds to changes in external phosphorus loading. Results indicate that a 50-percent reduction in external loading from that measured in 2009 would be required to change phosphorus concentrations from 0.018 milligram per liter (mg/L) (measured in 2009) to 0.012 mg/L (estimated for the mid-1800s from analysis of diatoms in sediment cores). Such reductions in phosphorus loading cannot be accomplished by targeting septic systems or internal loading alone because septic systems contribute only about 3 percent of the phosphorus input to the lake, and internal loading from the sediments of Shell Lake contributes only about 25 percent of phosphorus input. Complete elimination of phosphorus from septic systems and internal loading would decrease the phosphorus concentrations in the lake by 0.003–0.004 mg/L. Therefore, reducing phosphorus concentration in the lake more than by 0.004 mg/L requires decreasing phosphorus loading from surface-water contributions, primarily runoff to the lake. Reconstructed changes in water quality from 1860 to 2010, based on changes in the diatom communities archived in the sediments and eutrophication model simulations, suggest that anthropogenic changes in the watershed (sawmill construction in 1881; the establishment of the village of Shell Lake; and land-use changes in the 1920s, including increased agriculture) had a much larger effect on water quality than the natural changes associated with fluctuations in water level. Although the effects of natural changes in water level on water quality appear to be small, changes in water level do have a modest effect on water quality, primarily manifested as small improvements during higher water levels. Fluctuations in water level, however, have a larger effect on the seasonality of water-quality patterns, with better water quality, especially increased Secchi depths, in early summer during years with high water levels.

Wisconsin↗

USGS2010

Seasonal and Spatial Distribution of Freshwater Flow and Salinity in the Ten Thousand Islands Estuary, Florida, 2007-2009

The watershed of the Ten Thousand Islands (TTI) estuary has been substantially altered through the construction of canals and roads for the Southern Golden Gate Estates (SGGE), Barron River Canal, and U.S. 41 (Tamiami Trail). Two restoration projects designed to improve freshwater delivery to the estuary are the Picayune Strand Restoration Project, which includes the Southern Golden Gate Estates, and the Tamiami Trail Culverts Project; both are part of the Comprehensive Everglades Restoration Plan. To address hydrologic information needs critical for monitoring the effects of these restoration projects, the U.S. Geological Survey initiated a study in October 2006 to characterize freshwater outflows from the rivers, internal circulation and mixing within the estuary, and surface-water exchange between the estuary and Gulf of Mexico. The effort is conducted in cooperation with the South Florida Water Management District and complemented by monitoring performed by the Rookery Bay National Estuarine Research Reserve. Surface salinity was measured during moving boat surveys using a flow-through system that operated at planing speeds averaging 20 miles per hour. The data were logged every 10 seconds by a data recorder that simultaneously logged location information from a Global Positioning System. The major rivers, bays, and nearshore Gulf of Mexico region of the TTI area were surveyed in approximately 5 hours by two boats traversing about 200 total miles. Salinity and coordinate data were processed using inverse distance weighted interpolation to create salinity contour maps of the entire TTI region. Ten maps were created from salinity surveys performed between May 2007 and May 2009 and illustrate the dry season, transitional, and wet season salinity patterns of the estuarine rivers, inner bays, mangrove islands, and Gulf of Mexico boundary. The effects of anthropogenic activities are indicated by exceptionally low salinities associated with point discharge into the estuary from the Faka Union Canal and Barron River during the wet season. Low salinities in Faka Union Bay may cause reduced diversity and density of submerged aquatic vegetation, fish, and benthic organisms compared with neighboring Fakahatchee Bay. The Faka Union Canal System reduced the size of the watershed for the western TTI estuary, resulting in increased wet season salinities compared to those for the eastern TTI estuary, the watershed of which is composed of the relatively pristine Fakahatchee Strand Preserve State Park. Minimal river discharge and high evaporation caused hypersaline conditions to develop throughout the entire TTI region during the dry season. The 2007-2008 drought and passage of Tropical Storm Fay on August 18-19, 2008, demonstrated the effects of seasonal rainfall on salinity patterns, with substantially higher salinities observed during the 2007 wet season compared to those for the 2008 wet season. The salinity maps, coupled with data from the monitoring stations, provide baseline information of seasonal and spatial distribution of freshwater flow and salinity in the TTI estuary, and a means of monitoring the effects of restoration in improving freshwater delivery to the estuary.

Data Series↗

USGS2009

The Farm Process Version 2 (FMP2) for MODFLOW-2005 - Modifications and Upgrades to FMP1

The ability to dynamically simulate the integrated supply-and-demand components of irrigated agricultural is needed to thoroughly understand the interrelation between surface water and groundwater flow in areas where the water-use by vegetation is an important component of the water budget. To meet this need, the computer program Farm Process (FMP1) was updated and refined for use with the U.S. Geological Survey's MODFLOW-2005 groundwater-flow model, and is referred to as MF2005-FMP2. The updated program allows the simulation, analysis, and management of nearly all components of human and natural water use. MF2005-FMP2 represents a complete hydrologic model that fully links the movement and use of groundwater, surface water, and imported water for water consumption of irrigated agriculture, but also of urban use, and of natural vegetation. Supply and demand components of water use are analyzed under demand-driven and supply-constrained conditions. From large- to small-scale settings, the MF2005-FMP2 has the unique set of capabilities to simulate and analyze historical, present, and future conditions. MF2005-FMP2 facilitates the analysis of agricultural water use where little data is available for pumpage, land use, or agricultural information. The features presented in this new version of FMP2 along with the linkages to the Streamflow Routing (SFR), Multi-Node Well (MNW), and Unsaturated Zone Flow (UZF) Packages prevents mass loss to an open system and helps to account for 'all of the water everywhere and all of the time'. The first version, FMP1 for MODFLOW-2000, is limited to (a) transpiration uptake from unsaturated root zones, (b) on-farm efficiency defined solely by farm and not by crop type, (c) a simulation of water use and returnflows related only to irrigated agriculture and not also to non-irrigated vegetation, (d) a definition of consumptive use as potential crop evapotranspiration, (e) percolation being instantly recharged to the uppermost active aquifer, (f) automatic routing of returnflow from runoff either to reaches of tributary stream segments adjacent to a farm or to one reach nearest to the farm's lowest elevation, (g) farm-well pumping from cell locations regardless of whether an irrigation requirement from these cells exists or not, and (h) specified non-routed water transfers from an undefined source outside the model domain. All of these limitations are overcome in MF2005-FMP2. The new features include (a) simulation of transpiration uptake from variably saturated, fully saturated, or ponded root zones (for example, for crops like rice or riparian vegetation), (b) definition of on-farm efficiency not only by farm but also by crop, (c) simulation of water use and returnflow from non-irrigated vegetation (for example, rain-fed agriculture or native vegetation), (d) use of crop coefficients and reference evapotranspiration, (e) simulation of the delay between percolation from farms through the unsaturated zone and recharge into the uppermost active aquifer by linking FMP2 to the UZF Package, (f) an option to manually control the routing of returnflow from farm runoff to streams, (g) an option to limit pumping to wells located only in cells where an irrigation requirement exists, and (h) simulation of water transfers to farms from a series of well fields (for example, recovery well field of an aquifer-storage-and-recovery system, ASR). In addition to the output of an economic budget for each farm between irrigation demand and supply ('Farm Demand and Supply Budget' in FMP1), a new output option called 'Farm Budget' was created for FMP2, which allows the user to track all physical flows into and out of a water accounting unit at all times. Such a unit can represent individual farms, farming districts, natural areas, or urban areas. The example model demonstrates the application of MF2005-FMP2 with delayed recharge through an unsaturated zone, rejected infiltration in a riparian area, changes in de

Techniques and Methods↗

USGS2026

Wind River subbasin restoration: Annual report of U.S. Geological Survey activities January 2024 through December 2024

We sampled juvenile wild Oncorhynchus mykiss (Steelhead Trout) in headwater streams of the Wind River, Washington, to characterize population attributes and investigate life-history metrics, particularly migratory patterns, and early life-stage survival. Additionally, this sampling provides an index of abundance of non-native Brook Trout Salvelinus confluentus . We used passive integrated transponder (PIT) tagging and a series of instream PIT-tag interrogation systems (PTISs) to track juveniles and adults. The Wind River subbasin is considered a wild Steelhead refuge by Washington Department of Fish and Wildlife (WDFW). No hatchery Steelhead Trout have been released in the Wind River subbasin since 1997, and hatchery adults are estimated at less than one percent of spawners in most years. Over 25 years of Steelhead Trout status and trend monitoring and research in the subbasin is contributing to understanding of population response to numerous restoration actions in the subbasin, including removal of Hemlock Dam from Trout Creek in 2009, which had an inadequate adult ladder and contributed to increased water temperatures, to near lethal levels for salmonids. Data from our study, and companion work by WDFW, are contributing to the Columbia Basin Fish and Wildlife Program (2009) Research, Monitoring, and Evaluation (RM&E) Strategy of Fish Population Status Monitoring. Specifically, this work addresses the sub-strategies of 1) Assessing the Status and Trends of Diversity of Natural Origin Fish Populations and Uncertainties Research regarding differing life histories of a wild Steelhead Trout population, 2) Assessing the Status and Trend of Adult Natural Origin Fish Populations, and 3) Monitoring and Evaluating the Effectiveness of Tributary Habitat Actions Relative to Environmental, Physical, or Biological Performance Objectives. During summer and fall 2024, we PIT-tagged 2,075 Steelhead Trout parr (age-0 and age-1), in the Trout Creek and upper Wind River watersheds. Age-0 and age-1 parr were at high abundance due to strong spawner numbers in 2023 and 2024 (Estimate of 932 in 2023; and a moderate number of spawners in 2024 though an estimate is not available at this time; 24-year median = 619; Charlie Cochran, WDFW Fish Biologist, personal commun., 2025). An additional 100 parr (age-0 and age-2 or older) were tagged to provide fish for estimating detection efficiencies at PTISs. Steelhead Trout parr were recaptured and detected through repeat headwater sampling, smolt trapping, instream PTISs and Columbia River mainstem PIT-tag detection. We maintained and upgraded six instream PTISs to detect PIT-tagged Steelhead Trout parr, smolts, and adults, providing data for population assessments, and life-cycle research. Detection data from PIT-tagged adult Steelhead Trout at our four primary PTISs allow assessment of adult escapement to tributary watersheds within the Wind River subbasin. Most adult Steelhead detected were tagged by WDFW at an adult trap in the lower Wind River and some as smolts at screw traps. Adult Steelhead Trout detection efficiency estimates at our primary PTIS in Trout Creek have been greater than 99 percent during eight of the past ten years and have exceeded 97% at our primary PTIS in the Wind River during nine of the past ten years. Adult escapement estimates to tributary watersheds are helping evaluate the efficacy of the 2009 removal of Hemlock Dam from rkm 2.0 of Trout Creek. Detections at the instream PTISs have shown trends of age-0 and age-1 Steelhead Trout parr emigration from natal areas during summer and fall, in addition to the expected movement of parr and smolts in spring. Our data suggest that most fish from a cohort that migrate downstream will do so at age-1 for additional rearing in the subbasin. We have estimated that from 15% to 56% of parr tagged as age-0 fish in headwater areas make downstream migrations at age-1 for additional rearing (median = 29%). We have estimated that from 1% to 27% of Steelhead Trout parr, tagged as age-1 fish, make downstream migrations during fall (median = 3.5%): this is especially pronounced in the upper Wind River portion of the watershed (median 10%). These findings raise questions about parr rearing habitat and whether migrations are density- or habitat-quality driven, and answers to such questions are long-term goals of this study as active and passive habitat restoration occurs. Repeat sampling at sites in the subbasin within and between years has enabled assessment of juvenile Steelhead Trout growth patterns. Growth rates (relative change in weight) of age-0 PIT-tagged parr during summer have been similar across the subbasin, though slightly lower in the Trout Creek watershed (Trout Creek sites, 0.57 - 1.25%/day, Wind River sites = 0.94 – 2.48%/day). Summer growth rates have been lower for age-1 parr in the Trout Creek watershed than the upper Wind River watershed (Trout Creek sites, = 0.03 - 0.14%/day, Wind River sites = 0.05 – 0.19%/day). Yearly relative growth was similar across the subbasin for both age-0 and age-1 tagged parr. During 2024 range of mean daily relative change in weight from the previous year for age-0 tagged fish was: Trout Creek sites = 0.96 – 1.41%/day, Wind River sites = 0.80 – 1.30 %/day; and for age1 tagged fish was: Trout Creek sites = 0.37 - 0.50 %/day, Wind River sites = no age-1 tagged recaptures. Non-native Brook Trout are present in the subbasin, chiefly the Trout Creek watershed. Mean percent-of-catch that is Brook Trout, at four sample sites in Trout Creek, has declined from the period 1998 – 2003 to the period 2011 – 2024 (range of decrease = 19 - 82%). Percent-of-catch (of 64 samples, 52 < 10%; 3 > 20%) and number of Brook Trout at the Trout Creek sites from 2011 through 2024, though variable, have generally declined. Habitat restoration evaluation efforts are critical to ensure efficient use of money and resources but require long-term monitoring of population metrics. Detailed viable salmonid population and life-history data, such as that provided by PIT-tagging and instream PTIS networks inform fisheries policy and management and enable assessment of long-term effects of habitat restoration actions such as the removal of Hemlock Dam on Trout Creek and proposed major instream habitat restoration in the upper Wind River.

Washington↗

USGS2005

Classification of hydrogeologic areas and hydrogeologic flow systems in the basin and range physiographic province, southwestern United States

The hydrogeology of the Basin and Range Physiographic Province in parts of Arizona, California, New Mexico, Utah, and most of Nevada was classified at basin and larger scales to facilitate information transfer and to provide a synthesis of results from many previous hydrologic investigations. A conceptual model for the spatial hierarchy of the hydrogeology was developed for the Basin and Range Physiographic Province and consists, in order of increasing spatial scale, of hydrogeologic components, hydrogeologic areas, hydrogeologic flow systems, and hydrogeologic regions. This hierarchy formed a framework for hydrogeologic classification. Hydrogeologic areas consist of coincident ground-water and surface-water basins and were delineated on the basis of existing sets of basin boundaries that were used in past investigations by State and Federal government agencies. Within the study area, 344 hydrogeologic areas were identified and delineated. This set of basins not only provides a framework for the classification developed in this report, but also has value for regional and subregional purposes of inventory, study, analysis, and planning throughout the Basin and Range Physiographic Province. The fact that nearly all of the province is delineated by the hydrogeologic areas makes this set well suited to support regional-scale investigations. Hydrogeologic areas are conceptualized as a control volume consisting of three hydrogeologic components: the soils and streams, basin fill, and consolidated rocks. The soils and streams hydrogeologic component consists of all surface-water bodies and soils extending to the bottom of the plant root zone. The basin-fill hydrogeologic component consists of unconsolidated and semiconsolidated sediment deposited in the structural basin. The consolidated-rocks hydrogeologic component consists of the crystalline and sedimentary rocks that form the mountain blocks and basement rock of the structural basin. Hydrogeologic areas were classified into 19 groups through a cluster analysis of 8 characteristics of each area's hydrologic system. Six characteristics represented the inflows and outflows of water through the soils and streams, basin fill, and consolidated rocks, and can be used to determine the hydrogeologic area's position in a hydrogeologic flow system. Source-, link-, and sink-type hydrogeologic areas have outflow but not inflow, inflow and outflow, and inflow but not outflow, respectively, through one or more of the three hydrogeologic components. Isolated hydrogeologic areas have no inflow or outflow through any of the three hydrogeologic components. The remaining two characteristics are indexes that represent natural recharge and discharge processes and anthropogenic recharge and discharge processes occurring in the hydrogeologic area. Of the 19 groups of hydrogeologic areas, 1 consisted of predominantly isolated-type hydrogeologic areas, 7 consisted of source-type hydrogeologic areas, 9 consisted of link-type hydrogeologic areas, and 2 consisted of sink-type hydrogeologic areas. Groups comprising the source-, link-, and sink-type hydrogeologic areas can be distinguished between each other on the basis of the hydrogeologic component(s) through which interbasin flow occurs, as well as typical values for the two indexes. Conceptual models of the hydrologic systems of a representative hydrogeologic area for each group were developed to help distinguish groups and to synthesize the variation in hydrogeologic systems in the Basin and Range Physiographic Province. Hydrogeologic flow systems consist of either a single isolated hydrogeologic area or a series of multiple hydrogeologic areas that are hydraulically connected through interbasin flows. A total of 54 hydrogeologic flow systems were identified and classified into 9 groups. One group consisted of single isolated hydrogeologic areas. The remaining eight groups consisted of multiple hydrogeologic areas and were distinguished o

Professional Paper↗

USGS2020

Hydrogeology and groundwater geochemistry of till confining units and confined aquifers in glacial deposits near Litchfield, Cromwell, Akeley, and Olivia, Minnesota, 2014–18

Confined (or buried) aquifers of glacial origin overlain by till confining units provide drinking water to hundreds of thousands of Minnesota residents. The sustainability of these groundwater resources is not well understood because hydraulic properties of till that control vertical groundwater fluxes (leakage) to underlying aquifers are largely unknown. The U.S. Geological Survey, Iowa State University, Minnesota Geological Survey, and Minnesota Department of Health investigated hydraulic properties and groundwater flow through till confining units using field studies and heuristic MODFLOW simulations. Till confining units in the following late-Wisconsinan stratigraphic units (with locations in parentheses) were characterized: Des Moines lobe till of the New Ulm Formation (Litchfield, Minnesota), Superior lobe till of the Cromwell and Aitkin Formations (Cromwell, Minn.), and Wadena lobe till of the Hewitt Formation (hydrogeology field camp [HFC] near Akeley, Minn.). Pre-Illinoian till of the Good Thunder formation (Olivia, Minn.) was also characterized. Hydraulic and geochemical field data were collected from sediment cores and a series of five piezometer nests. Each nest consisted of five to eight piezometers screened at short vertical intervals in hydrostratigraphic units including (if present) surficial aquifers, till confining units, confined/buried aquifers, and underlying bedrock. Till hydraulic conductivity was estimated from slug tests (horizontal [ K h ]) and constant-rate aquifer tests in the confined aquifer (vertical [ K v ]). Travel times through the till were evaluated with Darcy’s law and stable isotope concentrations. A series of heuristic MODFLOW simulations were used to evaluate groundwater fluxes through till across the range of till hydraulic properties and pumping rates observed at the field sites. The field data demonstrated variability in hydraulic properties between and within till stratigraphic units horizontally and vertically. The variability in hydraulic properties within and between sites resulted in substantial differences in groundwater flux through till. A conceptual understanding that emerges from the vertical till profiles is that they are not homogeneous hydrostratigraphic units with uniform properties; rather, each vertical sequence is a heterogeneous mixture of glacial sediment with differing abilities to transmit water. Till thicknesses varied from 60 to 166 feet, and till textures ranged from a sandy loam (Hewitt Formation, HFC site) to a silt loam/clay loam (Good Thunder formation, Olivia site). Till Kh varied by one to three orders of magnitude within each piezometer nest. Four piezometer nests had downward hydraulic gradients ranging from 0.04 to 0.56, and one nest had a slight upward hydraulic gradient of 0.02. The Cromwell, HFC, and Litchfield 1 sites were examples of “leaky” tills with high Kv (0.001 to 1.1 feet per day [ft/d]) and geometric mean Kh (0.03 to 0.07 ft/d) and extensive vertical hydraulic connectivity between the confined aquifer and the overlying till. Estimated groundwater travel times through these sites ranged from 1 to 81 years, and two of these sites had tritium throughout their till profiles. The tills at the other two sites, Olivia and Litchfield 2, were effective confining units that had low Kv (0.001 to 0.0005 ft/d) and geometric mean Kh (0.0002 to 0.004 ft/d). The till piezometers at these sites had no drawdown response to short-term (up to 10 hours for Olivia and up to 5 days for Litchfield) high-capacity pumping from the confined aquifer. Estimated groundwater travel times through the tills at these sites ranged from 165 to nearly 1,800 years, and tritium was only detected in the upper one-third of these till profiles. Across all sites, the till vertical anisotropy (ratio of K h to K v ) ranged by four orders of magnitude from 0.05 at the Cromwell nest to 70 at the Litchfield 1 nest. Stable isotopes of oxygen and hydrogen indicate that groundwater throughout all five till profiles is younger than the last glacial advance into Minnesota at about 11,000 years ago. The heuristic modeling demonstrated that, for understanding sustainability of groundwater pumping from confined aquifers, knowledge of till hydraulic properties is just as important as knowledge of aquifer hydraulic properties. Substantial differences in groundwater fluxes into and through till were observed across hydrogeologic settings representative of the field sites. Over long periods of time (hundreds of years), pumping-induced hydraulic gradients are established in confined aquifer systems and, even in low hydraulic conductivity tills, these pumping-induced hydraulic gradients increase leakage into and through till compared to ambient conditions. In conclusion, groundwater flowing vertically downward through till confining units (leakage) replenishes water pumped from confined aquifers. Till hydraulic properties, such as those presented in this report, provide important information that can be used to quantify leakage rates through till. Till hydraulic properties are variable over short distances and profoundly affect leakage rates, demonstrating the importance of site-specific till hydraulic data for evaluating the sustainability of groundwater withdrawals from confined aquifers.

Minnesota↗

USGS2020

Wind River subbasin restoration: Annual report of US..Geological Survey activities, January 2018 through December 2018

We sampled juvenile wild Steelhead Oncorhynchus mykiss in headwater streams of the Wind River, WA, to characterize populations and investigate life-history metrics, particularly migratory patterns. We used Passive Integrated Transponder (PIT)-tagging and a series of instream PIT-tag interrogation systems (PTISs) to track juveniles. The Wind River subbasin is considered a wild Steelhead refuge by Washington Department of Fish and Wildlife (WDFW). No hatchery Steelhead have been planted in the Wind River subbasin since 1997, and hatchery adults are estimated to be less than one percent of spawners in most years (pers comm. Thomas Buehrens, Washington Department of Fish and Wildlife). Our repeated headwater sampling of consistent sites in the Wind River subbasin has also allowed us to track relative abundance of Brook Trout, a non-native species to the Wind River. Our work is contributing to understanding of Steelhead population response to numerous restoration actions in the subbasin, including removal of Hemlock Dam from Trout Creek in 2009, where our PTISs are helping to quantify adult response. Data from our study, and companion work by Washington Department of Fish and Wildlife, are contributing to Bonneville Power Administration’s (BPA) Research Monitoring and Evaluation (RM&E) Program Strategy of Fish Population Status Monitoring (www.cbfish.org/ProgramStrategy.mvc/ViewProgramStrategySummary/1). Specifically this work addresses the sub-strategies of: 1) Assessing the Status and Trends of Diversity of Natural Origin Fish Populations and to Uncertainties Research regarding differing life histories of a wild Steelhead population, 2) Assessing the Status and Trend of Adult Natural Origin Fish Populations, and 3) Monitoring and Evaluating the Effectiveness of Tributary Habitat Actions Relative to Environmental, Physical, or Biological Performance Objectives. Our headwaters parr PIT tagging, WDFW parr, smolt, and adult tagging and our instream PTISs are providing data on movements and life histories of parr, smolt, and adult Steelhead. During summer 2018, we PIT-tagged 1,592 age-0 and age-1 Steelhead parr in headwater areas of the Wind River subbasin to characterize population traits and investigate life-history diversity, including growth and pre-smolt downstream movement. Repeat headwater sampling and smolt trap operations provide opportunities for recapture, and instream PTISs and Columbia River infrastructure provide opportunity for detection of PIT-tagged fish. Throughout the year, we maintained a series of six instream PTISs to monitor movement of tagged Steelhead parr, smolts, and adults. Detections at the instream PTISs have demonstrated trends of age-0 and age-1 parr emigration from natal areas during summer and fall, in addition to the expected movement of parr and smolts in spring. Substantial numbers of parr make downstream movements as age-1 fish. We have estimated that from 15 to 33 percent of parr tagged as age-0 fish make downstream migrations at age-1 for additional rearing. We have estimated that from 1 to 27 percent of parr tagged as age-1 fish make downstream migrations during fall. These findings raise many questions about parr rearing strategies, habitat use, and success of these migrants and suggest a need for broader monitoring of juvenile Steelhead in some river systems to fully document juvenile production. Long-term monitoring of PIT-tagged fish is providing information on contribution of various life-history strategies to smolt production and adult returns. Movements of PIT-tagged adult Steelhead were recorded at instream PTISs. These data have allowed assessment of adult returns to tributary watersheds within the Wind River subbasin. Detection efficiency of adult PIT-tagged Steelhead at our primary adult-monitoring PTIS in Trout Creek has been greater than 92 percent during 6 of the past 7 years. This is providing excellent data to estimate adult returns to this watershed. Determination of adult use of tributary watersheds is providing data to help evaluate the efficacy of the removal of Hemlock Dam on Trout Creek. Hemlock Dam, located at rkm 2.0 of Trout Creek, was removed in summer 2009. The dam contributed to hydrologic impairment of Trout Creek and had potential negative effects on Steelhead. The improvements made to the upper Wind River PTIS (site code WRU at rkm 28.3; better site characteristics and grid power) during 2016 and 2017, and a planned new site in the Mine Reach of the upper Wind River, will allow estimates of subbasin adult escapement like those in Trout Creek. During 2018, we also completed planning and permitting with U.S. Forest Service for a new PTIS site at rkm 36 of the Wind River (the Mine Reach, mentioned above). This site will replace two sites (one in Paradise Creek and one at rkm 41 of the Wind River), which had operational challenges due to lack of adequate solar power and winter difficulties. The new Mine Reach PTIS site at rkm 36, will have better solar exposure, fewer winter operations difficulties, and provide opportunity to detect fish from juvenile sampling sites that were downstream of the previous two PTISs. The more consistent operation of the new Mine Reach PTIS site will increase our ability to estimate migrant abundance as all the juveniles tagged upstream of it will be subject to the same potential detection history, instead of three different potential detection histories as before. Additionally, with the new Mine Reach PTIS site lower in the watershed, it will subject more PIT-tagged adult Steelhead to detection and provide ability to generate a nonbiased adult-detection efficiency estimate for the WRU PTIS at rkm 28.3 of the Wind River. This will provide the opportunity to estimate yearly adult Steelhead abundance to the upper Wind watershed area. Permitting is complete and some supplies have been purchased to build and install this new site in 2019. Repeat sampling at consistent locations in the subbasin has allowed investigation into juvenile Steelhead growth patterns. Growth rates (relative change in weight) of age-0 PIT-tagged parr during summer are similar across the subbasin, but lower for age-1 parr in the Trout Creek watershed than the upper Wind River watershed. Yearly growth for parr tagged at age-0 is similar across the subbasin. Yearly growth for parr tagged at age-1 is lowest in Martha Creek, but similar elsewhere. Non-native Brook Trout are present in portions of the subbasin, chiefly the Trout Creek watershed, and repeat sampling has allowed us to index their prevalence. Percentage of catch that is Brook Trout at each of four sample sites in Trout Creek have declined from the period 1998 – 2003 to the period 2011 – 2018. There was a pattern of decline in percent of catch and number of Brook Trout at the Trout Creek sites from 2011 through 2016, though a slight upward trend during 2017 and 2018 has been evident. Evaluating and planning restoration efforts are of interest to many managers and agencies to ensure efficient use of resources. The evaluation of various life-histories of Steelhead within the Wind River subbasin will provide information to better track populations, and to direct habitat restoration and water allocation planning. Movement of Steelhead parr raises many questions regarding estimating juvenile abundance, origin, and habitat use within watersheds. Improved PTISs and focused PIT tagging of age-0 and age-1 Steelhead parr are increasingly allowing us to investigate such questions. Increasingly detailed Viable Salmonid Population information, such as that provided by PIT-tagging and instream PTISs networks like those in the Wind River subbasin, provide data to inform policy and management, as life-history strategies and production bottlenecks are identified and understood.

Washington↗

USGS2017

Variation and plasticity and their interaction with urbanization in Guadalupe Bass populations on and off the Edwards Plateau

The Colorado River Basin in Texas has experienced major alterations to its hydrologic regime due to changing land and water use patterns. These anthropogenic influences on hydrologic variability have had major implications for riparian and aquatic ecosystems and the species dependent upon them. However, impacts are often assessed at a limited temporal and spatial scale, tending to focus on relatively short and discrete periods or portions of a river basin. It is not clear how basin-wide alterations occurring over decades affect species. Guadalupe Bass Micropterus treculii are endemic to central Texas and are typically associated with shallow runs and riffles in small streams. However, Guadalupe Bass are found throughout the Colorado River Basin, including the mainstem portion of the lower river downstream of the city of Austin where they support a popular fishery. Because Guadalupe Bass exist across a wide range of stream orders within the basin, it is unclear whether populations respond similarly to anthropogenic disturbances or to conservation and restoration activities. Therefore, our objectives were to: Assess the effects of urbanization and hydrology on the population structure and dynamics of Guadalupe Bass. Evaluate the effects of environmental gradients on ecomorphological variation in Guadalupe Bass populations across multiple spatial scales. Describe the life history, habitat use, and behavior of the Guadalupe Bass population in the lower Colorado River and compare it to populations in more “typical” habitats. Results contribute to an understanding of the response of Guadalupe Bass to anthropogenic disturbances, including increased urbanization in central Texas and further assist in the conservation of the species. The ability of the population to not only persist, but flourish downstream of a heavily populated urban area presented a unique opportunity to investigate a native species response to anthropogenic disturbance. This research revealed differences in Guadalupe Bass habitat associations and movements, contrasts in age and growth, and morphological variation across a gradient of disturbance throughout the Colorado River Basin. Results of this work provide information on the potential effects of human population growth and increased water withdrawals on Guadalupe Bass populations. Additionally, this work adds to an understanding of the unique Guadalupe Bass population found in the lower Colorado River and how it differs from upstream tributary populations. Gathering additional population-level information facilitates conservation actions critical to preserving preferred habitat and promoting growth rates for Guadalupe Bass in streams of different sizes and flow conditions while highlighting interpopulation differences that may warrant consideration for stocking programs and other management strategies. Key findings of this study were: The similarity in response of growth rates to streamflow throughout the Colorado Basin suggests phenotypic plasticity in this trait rather than population-specific adaptations. Reductions in streamflows in the Colorado River Basin, whether due to increased frequency of drought or increased anthropogenic water withdrawal, will likely result in lower Guadalupe Bass growth rates with the potential to impact the structure of populations. Growth and recruitment showed a positive correlation with increased baseflows and mean monthly flows; however, continued assessment is necessary to determine a true relationship. We documented morphological divergence among Guadalupe Bass populations in response to spatial and temporal environmental variation. These ecomorphological differences among populations provide insight into the ability of Guadalupe Bass to respond to the differing in-stream habitat and flow conditions between small ‘typical’ tributary systems and the mainstem Colorado River. Morphological variation may be a population-level adaptation that potentially needs to be taken into consideration when choosing broodstock to maximize stocking success within a system. Understanding the morphological differences between Guadalupe Bass populations in response to local conditions could improve the success of restoration and supplemental stocking programs, especially in the ever-changing landscape of central Texas. We established a baseline for understanding the morphological response of Guadalupe Bass to increased population growth and the threats posed by increased water withdrawals and impervious surface. The mainstem population of Guadalupe Bass was generally more mobile, and more responsive to changes in streamflow, than tributary populations. The observed differences could influence the response of Guadalupe Bass populations to conservation and management actions, such as habitat restoration efforts. Continued monitoring of recruitment and angler exploitation may be beneficial to identify any changes that could negatively impact the population. Conservation initiatives solely focused on physical instream or riparian habitat are unlikely to be as beneficial to Guadalupe Bass as those focused on restoring or maintaining adequate streamflow

Cooperator Science Series↗

USGS2021

Optimization of the Idaho National Laboratory water-quality aquifer monitoring network, southeastern Idaho

Long-term monitoring of water-quality data collected from wells at the Idaho National Laboratory (INL) has provided essential information for delineating the movement of radiochemical and chemical wastes in the eastern Snake River Plain aquifer, southeastern Idaho. Since 1949, the U.S. Geological Survey, in cooperation with the U.S. Department of Energy, has maintained as many as 200 wells in the INL water-quality monitoring network. A network design tool, distributed as an R package, was developed to evaluate and optimize groundwater monitoring in the existing network based on water-quality data collected at 153 sampling sites since January 1, 1989. The objective of the optimization design tool is to reduce well monitoring redundancy while retaining sufficient data to reliably characterize water-quality conditions in the aquifer. A spatial optimization was used to identify a set of wells whose removal leads to the smallest increase in the deviation between interpolated concentration maps using the existing and reduced monitoring networks while preserving significant long-term trends and seasonal components in the data. Additionally, a temporal optimization was used to identify reductions in sampling frequencies by minimizing the redundancy in sampling events. Spatial optimization uses an islands genetic algorithm to identify near-optimal network designs removing 10, 20, 30, 40, and 50 wells from the existing monitoring network. With this method, choosing a greater number of wells to remove results in greater cost savings and decreased accuracy of the average relative difference between interpolated maps of the reduced-dataset and the full-dataset. The genetic search algorithm identified reduced networks that best capture the spatial patterns of the average concentration plume while preserving long-term temporal trends at individual wells. Concentration data for 10 analyte types are integrated in a single optimization so that all datasets may be evaluated simultaneously. A constituent was selected for inclusion in the spatial optimization problem when the observations were sufficient to (1) establish a two-range variability model, (2) classify at least one concentration time series as a continuous record block, and (3) make a prediction using the quantile-kriging interpolation method. The selected constituents include sodium, chloride, sulfate, nitrate, carbon tetrachloride, 1,1-dichloroethylene, 1,1,1-trichloroethane, trichloroethylene, tritium, strontium-90, and plutonium-238. In temporal optimization, an iterative-thinning method was used to find an optimal sampling frequency for each analyte-well pair. Optimal frequencies indicate that for many of the wells, samples may be collected less frequently and still be able to characterize the concentration over time. The optimization results indicated that the sample-collection interval may be increased by an of average of 273 days owing to temporal redundancy.

Idaho↗

USGS2024

Wind River Subbasin Restoration Annual Report of USGS Activities January 2021 through December 2022

We sampled juvenile wild Steelhead Trout Oncorhynchus mykiss in headwater streams of the Wind River, WA, to characterize population attributes and investigate life-history metrics, particularly migratory patterns, and early life-stage survival. We used passive integrated transponder (PIT) tagging and a series of instream PIT-tag interrogation systems (PTISs) to track juveniles and adults. The Wind River subbasin is considered a wild Steelhead refuge by Washington Department of Fish and Wildlife (WDFW). No hatchery Steelhead Trout have been released in the Wind River subbasin since 1997, and hatchery adults are estimated at less than one percent of spawners in most years. Over twenty years of Steelhead Trout status and trend monitoring and research in the subbasin is contributing to understanding of population response to numerous restoration actions in the subbasin, including removal of Hemlock Dam from Trout Creek in 2009, which had an outdated adult ladder and contributed to increased water temperatures reducing performance of juvenile Steelhead Trout. Data from our study, and companion work by Washington Department of Fish and Wildlife, are contributing to Bonneville Power Administrations (BPA) Research, Monitoring, and Evaluation (RM&E) Program Strategy of Fish Population Status Monitoring (https://www.cbfish.org/ProgramStrategy.mvc/Index). Specifically, this work addresses the sub-strategies of 1) Assessing the Status and Trends of Diversity of Natural Origin Fish Populations and Uncertainties Research regarding differing life histories of a wild Steelhead Trout population, 2) Assessing the Status and Trend of Adult Natural Origin Fish Populations, and 3) Monitoring and Evaluating the Effectiveness of Tributary Habitat Actions Relative to Environmental, Physical, or Biological Performance Objectives. During summer and fall 2021 and 2022, we PIT-tagged 1,889 and 1,391 Steelhead parr (age-0 and age-1), respectively, in the Trout Creek and upper Wind River watersheds. Age-0 parr were at lower densities in 2022 than many years due to a poor return of adult Steelhead spawners in 2022. Steelhead Trout parr were recaptured and detected through repeat headwater sampling, smolt trap operations, and instream PTISs and Columbia River PIT-tag detection infrastructure. We maintained, and upgraded in 2022, a series of six instream PTISs to monitor movement of tagged Steelhead Trout parr, smolts, and adults, providing data to population assessments, and life-cycle research and modeling. We continue to improve our PTISs in the Wind River subbasin. The improvements in siting and addition of grid power to the upper Wind River PTIS (site code WRU, rkm 27.6) during 2016 and 2017, and the addition of the Mine Reach site (site code MIN, rkm 36.0) have much improved PIT-tagged fish monitoring in the upper Wind River watershed. The paired PTIS design in the upper Wind River watershed (sites WRU and MIN) matches that in the Trout Creek watershed (sites TRC, rkm 2.0; and TC4, rkm 11.5) and will allow comparisons of Steelhead Trout population metrics between the two watersheds as response to Hemlock Dam removal continues and future restoration efforts occur in Trout Creek. During summer 2022, we upgraded three PTISs with new transceivers and new or reconfigured antennas. We replaced the Biomark 1001 Multiplexing Transceivers with Biomark MTS IS1001 Master Controller and individual IS1001 Transceivers at WRU, TRC (Trout Creek, rkm 2.0), and TC4 (Trout Creek at 43 Road Bridge, rkm 11.5). These new transceivers and antennas will improve detection performance due to increased read range and decreased susceptibility to noise. We also installed an additional IS1001 Transceiver and 11-foot antenna at WRA in summer 2021 to increase cross-channel and water column coverage. Detection data from PIT-tagged adult Steelhead Trout at PTISs allow assessment of adult escapement to tributary watersheds within the Wind River subbasin. Adult Steelhead Trout detection efficiency estimates at our primary PTIS in Trout Creek have been greater than 99 percent during six of the past eight years and have exceeded 97% at our primary PTIS in the Wind River during seven of the past eight years. Adult escapement estimates to tributary watersheds are helping us evaluate the efficacy of the 2009 removal of Hemlock Dam from rkm 2.0 of Trout Creek. The dam had potential negative effects on Steelhead Trout populations in Trout Creek due to hydrologic impairment, increased temperatures, and adult passage issues. Hemlock Dam was laddered for adult passage, but not to modern standards, which likely resulted in avoidance by some adult Steelhead Trout. Detections at the instream PTISs have demonstrated trends of age-0 and age-1 parr emigration from natal areas during summer and fall, in addition to the expected movement of parr and smolts in spring. We have estimated that from 15 to 51% of parr tagged as age-0 fish in headwater areas make downstream migrations at age 1 for additional rearing. Downstream movement occurs primarily during spring but also in fall. We have estimated that up to 27% of Steelhead Trout parr, tagged as age-1 fish, make downstream migrations during fall. Fall migration of age-1 parr has been more common in the upper Wind River watershed than the Trout Creek watershed. These findings raise questions about where parr most successfully rear and whether migrations are density- or habitat-quality driven. Broader monitoring programs would give a more comprehensive understanding of juvenile Steelhead Trout production and rearing and contributions to adult recruitment from varied rearing strategies. Repeat sampling at consistent locations in the subbasin has enabled assessment of juvenile Steelhead Trout growth patterns. Growth rates (relative change in weight) of age-0 PIT-tagged parr during summer were similar across the subbasin, though slightly lower in the Trout Creek watershed. The greatest summer growth rate was in the mainstem of the Wind River (rkm 37 and 41). Summer growth rates were lower for age-1 parr in the Trout Creek watershed than the upper Wind River watershed. Yearly relative growth was similar across the subbasin for both age-0 and age-1 tagged parr. Lower Layout Creek had the highest yearly growth rate of parr from age-0 to age-1. Mainstem Wind River (rkm 37) had the highest yearly growth rate of parr from age-1 to age-2. Non-native Brook Trout Salvelinus fontinalis are present in the subbasin, chiefly the Trout Creek watershed, and repeat sampling provides an index of their prevalence. Mean percent-of-catch that is Brook Trout, at four sample sites in Trout Creek, has declined from the period 1998 2003 to the period 2011 2022. Percent-of-catch and number of Brook Trout at the Trout Creek sites from 2011 through 2022 has generally declined, though both metrics have been somewhat variable. Evaluation and planning of habitat restoration efforts are critical to ensure efficient use of money and resources. Assessing Steelhead Trout life history variation in the Wind River subbasin will inform research and tracking of many populations and help inform habitat restoration and water allocation planning. Movement of Steelhead Trout parr from natal areas to other rearing areas raises questions regarding juvenile abundance, origin, and habitat use within watersheds. Improved PTISs and focused PIT-tagging of age-0 and age-1 Steelhead Trout parr allow investigation of such questions. Increasingly detailed viable salmonid population information, such as that provided by PIT-tagging and instream PTIS networks like those in the Wind River, can provide data to inform fisheries policy and management and understand life-history strategies and limiting factors. Such efforts also enable assessment of long-term effects of habitat restoration actions such as the removal of Hemlock Dam on Trout Creek, and the proposed Stage-0 restoration effort for upper Trout Creek, which would be a large-scale effort to reset sections of stream within their floodplain, restoring connectivity and interaction with surrounding landscape.

Report↗

USGS1987

Results of a workshop concerning assessment of the functions of bottomland hardwoods

The U.S. Environmental Protection Agency (EPA) is authorized under Section 404 of the Clean Water Act (33 U.S.C. 1344) to participate in the regulation of the discharge of dredged or fill material into waters of the United States. This regulatory authority is exercised in partnership with the U.S. Army Corps of Engineers, which has responsibility for permit issuance, and in consultation with the U.S. Fish and Wildlife Service and the National Marine Fisheries Service. Through amendments to the original statute, a series of legal actions and court decisions, and the development of operating guidance among the responsible agencies, Section 404 has evolved into the primary mechanism afforded Federal authorities for the protection of wetlands. EPA recognizes the importance of wetlands in achieving the goals of the Clean Water Act, which are to protect and maintain the chemical, physical, and biological integrity of the Nation’s waters. EPA Administrator Lee Thomas has identified wetlands protection as among the highest of Agency priorities. EPA recognizes that bottomland hardwood (BLH) wetlands have vital and unique attributes that, if lost, would severely impact the physical, chemical, and biological integrity of the Nation's waters. As part of a broad program to better protect the Nation's wetlands, EPA has therefore identified bottomland hardwood wetlands as a priority resource requiring special attention on a national basis. Recognizing the importance of implementing an effective, nationally consistent, and scientifically defensible regulatory program, EPA, in October 1984, issued Interim Operating Guidance to its field personnel for implementing the Section 404 regulatory program in bottomland hardwood wetlands. With the goal of improving and finalizing that guidance, EPA is sponsoring a series of workshops designed to answer key questions concerning BLH wetlands, based on the best scientific and technical information currently available. The first two workshops were directed toward summarizing existing scientific and technical knowledge concerning the functions of BLH ecosystems, the characteristics that are important to each function, and the impact of various development activities on those characteristics. The first workshop, which was held in St. Francisville, Louisiana, in December, 1984, examined a wetland zonation concept as a framework for gaining a greater understanding of BLH structure and function. The workshop set out to determine whether characterization of BLH resources as a series of relatively distinct zones, defined by concomitant variation in hydrologic regime, soils, and vegetation, might provide the basis for a useful and scientifically sound regulatory framework. For examp1e, if certain zones are of particular importance to one or more wetland functions that the Clean Water Act was intended to protect, then the zonation concept might be useful from the perspective of how various activities should be regulated. Discussions during the first workshop, however, indicated that the zonation concept provides, at best, only an incomplete picture of the structure and function of BLH ecosystems. In many cases, BLH functions are not limited to or closely correlated with particular zones and, furthermore, many factors other than zone are important determinants of BLH functions. With these responses in mind, the second workshop, held at Lake Lanier, Georgia, in July, 1985, was designed to elicit information on two questions. First, if zones are not an adequate framework for understanding the functions of BLH systems, what characteristics (predictors) can be used to assess the extent to which a particular site performs these functions? And second, what are the impacts of various development activities that often occur in BLH ecosystems on those characteristics and thus on the functions themselves? At the second workshop, individual workgroups dealing with particular subject areas (e.g., hydrology, water quality, fisheries, wildlife, ecosystem processes, and cultural/recreational/economic resources) were able to identify site characteristics that are important determinants of the performance of various functions. For example, the Hydrology Workgroup identified flood storage as one of three major hydrologic functions that BLH ecosystems perform. The workgroup then identified the most important characteristic (e.g., surface area of the site, soil saturation, and others) that determine flood storage and the likely impact of several common activities (e.g., conversion to soybean production and levee construction) on these characteristics. Some of the workgroups also provided estimates of the aggregate impact of activities, acting through all of the characteristics, on certain functions. The workgroups also identified key characteristics that could be used to identify high-value wetlands for various functions. In addition, the workgroups pointed out a number of topics needing further examination and discussion. First, all of the workgroups identified the need to develop the technical basis and information sources to address the problem of cumulative impacts in the regulatory process. Second, most of the workgroups noted the important of contextual variables in assessing the function of a particular site. For example, the location of a BLH site in relationship to other tracts of habitat is an important variable for many wildlife species. Similarly, the extent to which a site retains or transforms contaminants is depended not only on the characteristics of the site, but also on its position in a watershed relative to contaminant inputs. And finally, several of the workgroups pointed out that assessing the impact of an activity on a function is not as simple as "adding up" the impact on individual characteristics, but may depend instead on complex interactions among characteristics. Addressing these questions, as summarized in the objectives and discussions that follow, was the focus of the third workshop, the results of which are described in this report.

Report↗

USGS1999

Probability analysis of the relation of salinity to freshwater discharge in the St. Sebastian River, Florida

The St. Sebastian River lies in the southern part of the Indian River basin on the east coast of Florida. Increases in freshwater discharge due to urbanization and changes in land use have reduced salinity in the St. Sebastian River and, consequently, salinity in the Indian River, affecting the commercial fishing industry. Wind, water temperature, tidal flux, freshwater discharge, and downstream salinity all affect salinity in the St. Sebastian River estuary, but freshwater discharge is the only one of these hydrologic factors which might be affected by water-management practices. A probability analysis of salinity conditions in the St. Sebastian River estuary, taking into account the effects of freshwater discharge over a period from May 1992 to March 1996, was used to determine the likelihood (probability) that salinities, as represented by daily mean specific- conductance values, will fall below a given threshold. The effects of freshwater discharge on salinities were evaluated with a simple volumetric model fitted to time series of measured specific conductance, by using nonlinear optimization techniques. Specific-conductance values for two depths at monitored sites represent stratified flow which results from differences in salt concentration between freshwater and saltwater. Layering of freshwater and saltwater is assumed, and the model is applied independently to each layer with the assumption that the water within the layer is well mixed. The model of specific conductance as a function of discharge (a salinity response model) was combined with a model of residual variation to produce a total probability model. Flow distributions and model residuals were integrated to produce a salinity distribution and determine differences in salinity probabilities as a result of changes in water-management practices. Two possible management alternatives were analyzed: stormwater detention (reducing the peak rate of discharge but not reducing the overall flow volume) and stormwater retention (reducing peak discharges without later release). Detention of freshwater discharges increased the probability of specific- conductance values falling below a given limit (20,000 microsiemens per centimeter) for all sites but one. The retention of freshwater input to the system decreased the likelihood of falling below a selected limit of specific conductance at all sites. For limits of specific conductance (1,000 microsiemens per centimeter or 20,000 microsiemens per centimeter, depending on the site), the predicted days of occurrence below a limit decreased ranging from 17 to 68 percent of the predicted days of occurrence for unregulated flow. The primary finding to be drawn from the discharge-salinity analysis is that an empirical-response model alone does not provide adequate information to assess the response of the system to changes in flow regime. Whether a given level of discharge can produce a given response on a given day is not as important as the probability of that response on a given day and over a period of many days. A deterministic model of the St. Sebastian River estuary based only on discharge would predict that retention of discharge peaks should increase the average salinity conditions in the St. Sebastian River estuary. The probabilistic model produces a very different response indicating that salinity can decrease by a power of three as discharges increase, and that random factors can predominate and control salinity until discharges increase sufficiently to flush the entire system of saltwater.

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USGS2010

EAARL coastal topography-western Florida, post-Hurricane Charley, 2004: seamless (bare earth and submerged.

Project Description These remotely sensed, geographically referenced elevation measurements of lidar-derived seamless (bare-earth and submerged) topography were produced as a collaborative effort between the U.S. Geological Survey (USGS), Coastal and Marine Geology Program (CMGP), St. Petersburg, FL, and the National Aeronautics and Space Administration (NASA), Wallops Flight Facility, VA. This project provides highly detailed and accurate datasets of a portion of the western Florida coastline beachface, acquired post-Hurricane Charley on August 17 and 18, 2004. The datasets are made available for use as a management tool to research scientists and natural-resource managers. An innovative airborne lidar instrument originally developed at the NASA Wallops Flight Facility, and known as the Experimental Advanced Airborne Research Lidar (EAARL), was used during data acquisition. The EAARL system is a raster-scanning, waveform-resolving, green-wavelength (532-nanometer) lidar designed to map near-shore bathymetry, topography, and vegetation structure simultaneously. The EAARL sensor suite includes the raster-scanning, water-penetrating full-waveform adaptive lidar, a down-looking red-green-blue (RGB) digital camera, a high-resolution multispectral color infrared (CIR) camera, two precision dual-frequency kinematic carrier-phase GPS receivers, and an integrated miniature digital inertial measurement unit, which provide for sub-meter georeferencing of each laser sample. The nominal EAARL platform is a twin-engine Cessna 310 aircraft, but the instrument may be deployed on a range of light aircraft. A single pilot, a lidar operator, and a data analyst constitute the crew for most survey operations. This sensor has the potential to make significant contributions in measuring sub-aerial and submarine coastal topography within cross-environmental surveys. Elevation measurements were collected over the survey area using the EAARL system, and the resulting data were then processed using the Airborne Lidar Processing System (ALPS), a custom-built processing system developed in a NASA-USGS collaboration. ALPS supports the exploration and processing of lidar data in an interactive or batch mode. Modules for presurvey flight-line definition, flight-path plotting, lidar raster and waveform investigation, and digital camera image playback have been developed. Processing algorithms have been developed to extract the range to the first and last significant return within each waveform. ALPS is used routinely to create maps that represent submerged or sub-aerial topography. Specialized filtering algorithms have been implemented to determine the 'bare earth' under vegetation. For more information about similar projects, please visit the Decision Support for Coastal Science and Management website. Selected References Brock, J.C., Wright, C.W., Sallenger, A.H., Krabill, W.B., and Swift, R.N., 2002, Basis and methods of NASA airborne topographic mapper Lidar surveys for coastal studies: Journal of Coastal Research, v. 18, no. 1, p. 1-13. Crane, Michael, Clayton, Tonya, Raabe, Ellen, Stoker, Jason, Handley, Larry, Bawden, Gerald, Morgan, Karen, and Queija, Vivian, 2004, Report of the U.S. Geological Survey Lidar workshop sponsored by the Land Remote Sensing Program and held in St. Petersburg, FL, November 2002: U.S. Geological Survey Open-File Report 2004-1456, 72 p. Nayegandhi, Amar, Brock, J.C., and Wright, C.W., 2009, Small-footprint, waveform-resolving Lidar estimation of submerged and sub-canopy topography in coastal environments: International Journal of Remote Sensing, v. 30, no. 4, p. 861-878. Sallenger, A.H., Wright, C.W., and Lillycrop, Jeff, 2005, Coastal impacts of the 2004 hurricanes measured with airborne Lidar; initial results: Shore and Beach, v. 73, nos. 2-3, p. 10-14. Resources Included Readme.txt File

Data Series↗