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At least 757 records · Page 42Linked to original sources
USGS2006

Early Cretaceous terrestrial ecosystems in East Asia based on food-web and energy-flow models

In recent years, there has been global interest in the environments and ecosystems around the world. It is helpful to reconstruct past environments and ecosystems to help understand them in the present and the future. The present environments and ecosystems are an evolving continuum with those of the past and the future. This paper demonstrates the contribution of geology and paleontology to such continua. Using fossils, we can make an estimation of past population density as an ecosystem index based on food-web and energy-flow models. Late Mesozoic nonmarine deposits are distributed widely on the eastern Asian continent and contain various kinds of fossils such as fishes, amphibians, reptiles, dinosaurs, mammals, bivalves, gastropods, insects, ostracodes, conchostracans, terrestrial plants, and others. These fossil organisms are useful for late Mesozoic terrestrial ecosystem reconstruction using food-web and energy-flow models. We chose Early Cretaceous fluvio-lacustrine basins in the Choyr area, southeastern Mongolia, and the Tetori area, Japan, for these analyses and as a potential model for reconstruction of other similar basins in East Asia. The food-web models are restored based on taxa that occurred in these basins. They form four or five trophic levels in an energy pyramid consisting of rich primary producers at its base and smaller biotas higher in the food web. This is the general energy pyramid of a typical ecosystem. Concerning the population densities of vertebrate taxa in 1 km2 in these basins, some differences are recognized between Early Cretaceous and the present. For example, Cretaceous estimates suggest 2.3 to 4.8 times as many herbivores and 26.0 to 105.5 times the carnivore population. These differences are useful for the evaluation of past population densities of vertebrate taxa. Such differences may also be caused by the different metabolism of different taxa. Preservation may also be a factor, and we recognize that various problems occur in past ecosystem reconstructions. Counts of small numbers of confirmed species and estimates of maximum numbers of species present in the basin are used for the analysis and estimation of energy flow. This approach applies the methods of modern ecosystem analysis. ?? 2005 Elsevier Ltd. All rights reserved.

Cretaceous Research↗
USGS2024

Neonatal antipredator tactics shape female movement patterns in large herbivores

Caring for newborn offspring hampers resource acquisition of mammalian females, curbing their ability to meet the high energy expenditure of early lactation. Newborns are particularly vulnerable, and large herbivores have evolved a continuum of neonatal anti-predator tactics, ranging from immobile hider to highly mobile follower offspring. How these tactics constrain female movements around parturition is unknown, particularly within the current context of increasing habitat fragmentation and earlier plant phenology caused by global warming. Using a analysis across 54 populations of 23 species of large herbivores, we show that mothers adjust their movements to variation in resource productivity and heterogeneity according to their offspring’s neonatal tactic. Mothers with hider offspring are unable to exploit environments where the variability of resources occurs at a broad scale, which might alter resource allocation compared to mothers with follower offspring. Our findings reveal that the overlooked neonatal tactic plays a key role for predicting how species are coping with environmental variation.

Nature Ecology & Evolution↗
USGS2017

Using carbon dioxide in fisheries and aquatic invasive species management

To restore native fish populations, fisheries programs often depend on active removal of aquatic invasive species. Chemical removal can be an effective method of eliminating aquatic invasive species, but chemicals can induce mortality in nontarget organisms and persist in the environment. Carbon dioxide (CO 2 ) is an emerging alternative to traditional chemical control agents because it has been demonstrated to be toxic to fish, but is naturally occurring and readily neutralized. In addition, CO 2 is a commercially available gas, is highly soluble, and has high absorption efficiency. When these characteristics are paired with advances in modern, large-scale gas delivery technologies, opportunities to use CO 2 in natural or artificial (e.g., canals) waters to manage fish become increasingly feasible. Our objective is to describe the history of CO 2 use in fisheries and outline potential future applications of CO 2 to suppress and manipulate aquatic species in field and aquaculture settings.

Fisheries↗
USGS1997

The disappearance of Guam's wildlife: New insights for herpetology, evolutionary ecology, and conservation

The wealth of data generated from intensive study of the brown tree snake as a result of the need to control introduced populations of this pest species allow several important conclusions. First, that the snakes on Guam are extraordinary in terms of their absolute abundance and in terms of their ability to exploit a broad prey base. Our data suggest an exceptionally high reproductive success on Guam for a snake with an otherwise unnoteworthy reproductive capability and life history (i.e. small clutch size, typical ontogenetic shift from small heterothermic prey to larger homeotherms). Especially important was the snakes versatility in taking advantage of extremely common prey on islands; population expansion was slow but survival was maximal, ultimately leading to high population levels. The brown tree snake shares many attributes with other snakes that could cause similar biodiversity crises in a wide variety of contexts in which they lack coevolutionary histories (especially formerly snake-free island environments). As opposed to their relatively poor history as over-water dispersers, snakes may be especially problematic as travelers in increasing ship and air traffic between widely separated geographic regions of the world.

BioScience↗
USGS1971

Distribution of copper, lead, zinc, mercury, and arsenic in the surface sediments off the coast of northwestern Alaska

Increasing interest in potentially harmful substances utilized and discarded by man has raised question about the normal distribution of chemical elements in the natural environment. This interest prompted a baseline study of a pristine region off the northern coast of Alaska. Information was gathered on currents, water clarity, nutrients, temperature and salinity, zooplakton, benthic communities, neritic fauna, bird and mammal population and pesticide residues, sediment composition and chemistry of the sediments and their interstitial waters. This information will provide a base for ascertaining and evaluating future changes and for assessment of the potential hazard in this region and ecosystems elsewhere.

Alaska↗
USGS2008

The Global Flows of Metals and Minerals

This paper provides a preliminary review of the trends in worldwide metals and industrial minerals production and consumption based on newly developed global metals and minerals Material Flow Accounts (MFA). The MFA developed encompass data on extraction and consumption for 25 metal and mineral commodities, on a country-by-country and year-by-year basis, for the period 1970 to 2004. The data-base, jointly developed by the authors, resides with the U.S. Geological Survey (USGS) as individual commodity Excel workbooks and within a Filemaker data management system for use in analysis. Numerous national MFA have been developed to provide information on the industrial metabolism of individual countries. These MFA include material flows associated with the four commodity categories of goods that are inputs to a country's economy, agriculture, forestry, metals and minerals, and nonrenewable organic material. In some cases, the material flows associated with the creation and maintenance of the built infrastructure (such as houses, buildings, roads, airports, dams, and so forth) were also examined. The creation of global metals and industrial minerals flows is viewed as a first step in the creation of comprehensive global MFA documenting the historical and current flows of all of the four categories of physical goods that support world economies. Metals and minerals represent a major category of nonrenewable resources that humans extract from and return to the natural ecosystem. As human populations and economies have increased, metals and industrial minerals use has increased concomitantly. This dramatic growth in metals and minerals use has serious implications for both the availability of future resources and the health of the environment, which is affected by the outputs associated with their use. This paper provides an overview of a number of the trends observed by examining the database and suggests areas for future study.

Open-File Report↗
USGS2025

Pleistocene porcupine (Erethizontidae) records in arid southwestern North America and comparisons with the modern distribution of Erethizon dorsatum in southern California and Arizona

he North American porcupine ( Erethizon dorsatum ) is widely distributed throughout many ecosystems on the continent from northern Mexico to the Arctic Ocean, except for the southeastern portion of the United States. Habi­tats include the arid Desert Southwest region where modern records are generally sparse. The paleogeographic range in the Desert Southwest is not unlike the modern distribution of Erethizon , with some exceptions. Although there are early Pleistocene records of Erethizon for southern California, no late Pleistocene records (Rancholabrean North American Land Mammal Age [NALMA]) are known for Imperial, Inyo, Riverside, or San Bernardino Counties in southern California or in Mexico. This is surprising given late-Pleistocene records in Arizona, Nevada, and New Mexico and modern records from southern California and Mexico. Pleistocene habitats for porcupines were similar to those occupied today, just at different elevations due to differing climates. Modern preferred habitats in the Desert Southwest include conifer-clad high-elevation areas and associated pinyon pine / juniper belts, and occasionally riparian corridors in desert environments. The overall rarity of porcupines today in arid parts of the Desert Southwest is likely due to the combination of increasing aridity in the region during the Holocene, past persecution by humans, and increasing predator populations.

Arizona, California↗
USGS2012

Evidence for occurrence, persistence, and growth potential of Escherichia coli and enterococci in Hawaii’s soil environments

High densities of Escherichia coli and enterococci are common in freshwaters on Oahu and other Hawaiian Islands. Soil along stream banks has long been suspected as the likely source of these bacteria; however, the extent of their occurrence and distribution in a wide range of soils remained unknown until the current investigation. Soil samples representing the seven major soil associations were collected on the island of Oahu and analyzed for fecal coliforms, E. coli , and enterococci by the most probable number method. Fecal coliforms, E. coli , and enterococci were found in most of the samples analyzed; log mean densities (MPN ± SE g soil −1 ) were 1.96±0.18, n =61; 1.21±0.17, n =57; and 2.99±0.12, n =62, respectively. Representative, presumptive cultures of E. coli and enterococci collected from the various soils were identified and further speciated using the API scheme; at least six species of Enterococcus , including Enterococcus faecalis and Enterococcus faecium , were identified. In mesocosm studies, E. coli and enterococci increased by 100-fold in 4 days, after mixing sewage-spiked soil (one part) with autoclaved soil (nine parts). E. coli remained metabolically active in the soil and readily responded to nutrients, as evidenced by increased dehydrogenase activity. Collectively, these findings indicate that populations of E. coli and enterococci are part of the natural soil microflora, potentially influencing the quality of nearby water bodies.

Hawai'i↗
USGS2011

Report on the 2010 Chilean earthquake and tsunami response

In July 2010, in an effort to reduce future catastrophic natural disaster losses for California, the American Red Cross coordinated and sent a delegation of 20 multidisciplinary experts on earthquake response and recovery to Chile. The primary goal was to understand how the Chilean society and relevant organizations responded to the magnitude 8.8 Maule earthquake that struck the region on February 27, 2010, as well as how an application of these lessons could better prepare California communities, response partners and state emergency partners for a comparable situation. Similarities in building codes, socioeconomic conditions, and broad extent of the strong shaking make the Chilean earthquake a very close analog to the impact of future great earthquakes on California. To withstand and recover from natural and human-caused disasters, it is essential for citizens and communities to work together to anticipate threats, limit effects, and rapidly restore functionality after a crisis. The delegation was hosted by the Chilean Red Cross and received extensive briefings from both national and local Red Cross officials. During nine days in Chile, the delegation also met with officials at the national, regional, and local government levels. Technical briefings were received from the President’s Emergency Committee, emergency managers from ONEMI (comparable to FEMA), structural engineers, a seismologist, hospital administrators, firefighters, and the United Nations team in Chile. Cities visited include Santiago, Talca, Constitución, Concepción, Talcahuano, Tumbes, and Cauquenes. The American Red Cross Multidisciplinary Team consisted of subject matter experts, who carried out special investigations in five Teams on the (1) science and engineering findings, (2) medical services, (3) emergency services, (4) volunteer management, and (5) executive and management issues (see appendix A for a full list of participants and their titles and teams). While developing this delegation, it was clear that a multidisciplinary approach was required to properly analyze the emergency response, technical, and social components of this disaster. A diverse and knowledgeable delegation was necessary to analyze the Chilean response in a way that would be beneficial to preparedness in California, as well as improve mitigation efforts around the United States. By most standards, the Maule earthquake was a catastrophe for Chile. The economic losses totaled $30 billion USD or 17% of the GDP of the country. Twelve million people, or ¾ of the population of the country, were in areas that felt strong shaking. Yet only 521 fatalities have been confirmed, with 56 people still missing and presumed dead in the tsunami. The Science and Technology Team evaluated the impacts of the earthquake on built environment with implications for the United States. The fires following the earthquake were minimal in part because of the shutdown of the national electrical grid early in the shaking. Only five engineer-designed buildings were destroyed during the earthquake; however, over 350,000 housing units were destroyed. Chile has a law that holds building owners liable for the first 10 years of a building’s existence for any losses resulting from inadequate application of the building code during construction. This law was cited by many our team met with as a prime reason for the strong performance of the built environment. Overall, this earthquake demonstrated that strict building codes and standards could greatly reduce losses in even the largest earthquakes. In the immediate response to the earthquake and tsunami, first responders, emergency personnel, and search and rescue teams handled many challenges. Loss of communications was significant; many lives were lost and effective coordination to support life-sustaining efforts was gravely impacted due to a lack of inter- and intra-agency coordination. The Health and Medical Services Team sought to understand the medical disaster response strategies and operations of Chilean agencies, including perceived or actual failures in disaster preparation that impacted the medical disaster response; post-disaster health and medical interventions to save lives and limit suffering; and the lessons learned by public health and medical personnel as a result of their experiences. Despite devastating damage to the health care and civic infrastructure, the health care response to the Chilean earthquake appeared highly successful due to several factors. Like other first responders, the medical community had the ability and resourcefulness to respond without centralized control in the early response phase. The health care community maintained patient care under austere conditions, despite many obstacles that could have prevented such care. National and international resources were rapidly mobilized to support the medical response. The Emergency Services Team sought to collect information on all phases of emergency management (preparedness, mitigation, response, and recovery) and determine what worked well and what could be improved upon. The Chileans reported being surprised that they were not as ready for this event as they thought they were. The use of mass care sheltering was limited, given the scope of the disaster, because of the resiliency of the population. The impacts of the earthquake and the tsunami were quite different, as were the needs of urban and rural dwellers, necessitating different response activities. The Volunteer Services Team examined the challenges faced in mobilizing a large number of volunteers to assist in the aftermath of a disaster of this scale. One of the greatest challenges expressed was difficulty in communication; the need for redundancy in communication mechanisms was cited. The flexibility and ability to work autonomously by the frontline volunteers was a significant factor in effective response. It was also important for volunteer leadership to know the emergency plans. These plans need to be flexible, include alternative options, and be completed in conjunction with local officials and other volunteers. The Executive/Red Cross Management Team took a broad look at the impacts of the earthquake and the implications for California. Some of the most important preparation for the disaster came from relationships formed before the event. The communities with strong connections between different government services generally fared well. The initial response and resilience of individuals and communities was another important component. Communication system failures limited the ability of a central government to assist impacted communities, or to issue tsunami warnings. It also delayed the response since the government did not know (in some case for several days) the impact and needs of local governments. In general, plans for congregate care shelters existed but were little used as most people chose to stay at damaged homes or with relatives. Looting was a surprise to response officials as well as social scientists, but both public and private sector organizations, including NGOs (Non-Governmental Organizations), must consider security for damaged businesses as a priority in California’s multihazard planning. Class and ethnic divisions that become heightened during some cases of actual or perceived injustice may also emerge in natural disasters in California. Several factors contributed overall to the low casualty rate and rapid recovery. A major factor is the strong building code in Chile and its comprehensive enforcement. In particular, Chile has a law that holds building owners accountable for losses in a building they build for 10 years. A second factor was the limited number of fires after the earthquake. In the last few California earthquakes, 60% of the fires were started by electrical problems, so the rarity of fires may have been affected by the shut down of the electricity grid early in the earthquake. Third, in many areas, the local emergency response was very effective. The most effective regions had close coordination between emergency management, fire, and police and were empowered to respond without communication with the capital. The fourth factor was the overall high level of knowledge about earthquakes and tsunamis by much of the population that helped them respond more appropriately after the event.

Open-File Report↗
USGS1994

An overview of sea otter studies

The Exxron Valdez oil spill (EVOS) on 24 March 1989 threatened extensive areas of prime sea otter ( Enhydra lutris ) habitat along the coasts of south-central Alaska. The spill occurred in northeastern Prince William Sound (PWS), and oil moved rapidly south and west through PWS into the Gulf of Alaska. Much of the coastline of western PWS was heavily oiled, and the slick eventually spread as far southwest as Kodiak Island and the Alaska Peninsula (Galt and Payton 1990; Morris and Loughlin, Chapter 1). All coastal waters affected by the spill were inhabited by sea otters. Concern for the survival of sea otters following the oil spill was immediate and well founded. Sea otters are particularly vulnerable to oil contamination because they rely on pelage rather than blubber for insulation, and oiling drastically reduces the insulative value of the fur (Costa and Kooyman 1982; Siniff et al. 1982; Geraci and Williams 1990). Within days of the spill, recovery of oiled live otters and carcasses began. During the several months following the spill, sea otters became symbolic of the mortality associated with the spilled oil, and of the hope for rescue and recovery of injured wildlife (Batten 1990). An extensive sea otter rescue and rehabilitation effort was mounted in the weeks and months following the spill. Handling and treatment of the captive sea otters posed an enormous and difficult challenge, given the large number of otters held at the facilities and minimal prior experience in caring for oiled sea otters. Rehabilitation of sea otters was a separate effort from the postspill studies designed to evaluate injury to the otter populations and is not addressed in this chapter only as it relates to evaluation of damage assessment studies. Detailed information on the rehabilitation effort is presented in Bayha and Kormendy (1990) and Williams and Davis (1990). Sea otters retained a high profile in the Natural Resource Damage Assessment (NRDA) studies largely because the initial injury to the sea otter population was readily demonstrable, but also because of concerns about long-term damages. The scope of the postspill studies to assess oil-related damages to sea otters was extensive: From 1989 through 1993, more than $3,000,000 was spent, and more than 20 scientists were involved in a comprehensive research program. The studies were predominantly directed at sea otter populations in PWS. Damages to sea otters generally can be classified as either acute, defined as spill-related deaths occurring during the spill, or chronic, defined as longer term lethal or sublethal oil-related injuries. Studies of acute damages focused on estimating the total initial loss of sea otters. Characterization of the pathologies associated with exposure to oil was a secondary goal of studies of acute effects. Chronic or longer term damages may have resulted from sublethal initial exposure or continued exposure to hydrocarbons persisting in the environment. Studies of chronic effects included evaluating abundance and distribution, survival and reproduction rates, foraging behavior, and pathological, physiological, and toxicological changes in the years following the spill. The objective of this chapter is to review the studies conducted on sea otters in response to the EVOS and to synthesize the major findings of those studies relative to injury to the sea otter population associated with exposure to oil. We also provide recommendations for research to improve our understanding of the effects of future oil spills on Sea otter populations.

Alaska↗
USGS2011

Seafloor morphology and coral habitat variability in a volcanic environment: Kaloko-Honokohau National Park, Hawaii, USA

Kaloko–Honokohau National Historical Park (KAHO) is one of three National Park lands along the leeward, west, or Kona, coast of the island of Hawaii, USA. The park includes 596 acres (2.4 km2) of submerged lands and marine resources within its official boundaries. The offshore region of KAHO, part of the insular shelf of the island of Hawaii, comprises a volcanic embayment that extends nearly 3.5 km alongshore and varies in width between 120 and 875 m from the shoreline to the 40 m isobath, the limit of the high-resolution bathymetry. Multiple Holocene volcanic flows coalesce within Kaloko-Honokohau National Historical Park (KAHO) on the island of Hawaii to create a complex offshore morphology. The volcanic-dominated morphology includes flat to gently sloping volcanic benches, boulder fields, cliffs and ledges, pinnacles, ridges, arches, and steep shelf escarpments. Each of these environments provide distinct habitat zones for coral species, ranging from isolated heads of Porites lobata and Pocillopora meandrina to dense thickets of Porites compressa . In contrast to coral habitat elsewhere in the Hawaiian Islands, where coral typically populates relict carbonate platforms, coral cover in KAHO is typically only a thin veneer of live coral and rubble on exposed volcanic pavement. In only a few locations does coral or accreted carbonate reef obscure the underlying volcanic surface.

Book chapter↗
USGS1997

Influence of basin-scale physical variables on life history characteristics of cutthroat trout in Yellowstone Lake

Individual spawning populations of Yellowstone cutthroat trout Oncorhynchus clarki bouvieri differ in life history characteristics associated with broad spatial and temporal environmental patterns, but relationships between specific life history characteristics of Yellowstone cutthroat trout and physical aspects of the environment are poorly understood. We examined basin-scale physical characteristics of tributary drainages and subbasins of Yellowstone Lake in relation to timing (peak and duration) of lacustrine–adfluvial Yellowstone cutthroat trout spawning migrations and mean length of cutthroat trout spawners in 27 tributaries to the lake. Stream drainages varied along gradients that can be described by mean aspect, mean elevation, and drainage and stream size. Approximately two-thirds of the variation in the timing of the peak of the annual cutthroat trout spawning migrations and average length of spawners was explained by third-order polynomial regressions with mean aspect and basin area as predictor variables. Because most cutthroat trout ascend tributaries soon after peak runoff, it appears that the influence of basin-scale physical variables on the date of the migration peak is manifested by the pattern of stream discharge. Spawner length does not seem to be a direct function of stream size in the Yellowstone Lake watershed, and aspect of the tributary basin seems to have a greater influence on the body length of cutthroat trout spawners than does stream size. Mechanisms that explain how the interaction of basin-scale physical variables influence spawner length were not investigated directly; however, we found evidence of distinct aggregations of cutthroat trout that are related to physical and limnological characteristics of the lake subbasins, and there is some indication that lake residence may be related to tributary location.

Wyoming↗
USGS2008

General and specialized media routinely employed for primary isolation of bacterial pathogens of fishes

There are a number of significant diseases among cultured and free-ranging freshwater fishes that have a bacterial etiology; these represent a variety of gram-negative and gram-positive genera. Confirmatory diagnosis of these diseases involves primary isolation of the causative bacterium on bacteriologic media. Frequently used "general" bacteriologic media simply provide the essential nutrients for growth. For most of the major pathogens, however, there are differential and/or selective media that facilitate primary recovery. Some specialized media are available as "ready-to-use" from suppliers, while others must be prepared. Differential media employ various types of indicator systems, such as pH indicators, that allow diagnosticians to observe assimilation of selected substrates. An advantage to the use of differential media for primary isolation is that they hasten bacterial characterization by yielding the appropriate positive or negative result for a particular substrate, often leading to a presumptive identification. Selective media also incorporate agent(s) that inhibit the growth of contaminants typically encountered with samples from aquatic environments. Media that incorporate differential and/or selective components are ideally based on characters that are unique to the targeted bacterium, and their use can reduce the time associated with diagnosis and facilitate early intervention in affected fish populations. In this review, the concepts of general and differential/selective bacteriologic media and their use and development for fish pathogens are discussed. The media routinely employed for primary isolation of the significant bacterial pathogens of fishes are presented. ?? Wildlife Disease Association 2008.

Journal of Wildlife Diseases↗
USGS2011

Understanding the influence of predation by introduced fishes on juvenile salmonids in the Columbia River Basin: Closing some knowledge gaps. Interim Report of Research 2010

Project overview Predation on juvenile salmonids by fish in the Columbia River Basin (CRB) has impacted salmon survival and is a topic that has received considerable attention over the last three decades. Some of the earliest and most detailed research focused on the food habits, consumption rates, abundance, and distribution of predaceous northern pikeminnow Ptychocheilus oregonensis , smallmouth bass Micropterus dolomieu , walleye Sander vitreus , and channel catfish Ictalurus punctatus in John Day Reservoir (Beamesderfer and Rieman 1991; Poe et al. 1991; Vigg et al. 1991). This group of researchers also estimated the loss of juvenile salmonids to predation by some of these predators (Rieman et al. 1991). Since this pioneering effort, others have evaluated various aspects of predation-related mortality on juvenile salmonids in the CRB, focusing mostly on northern pikeminnow and smallmouth bass (e.g., Tabor et al. 1993; Zimmerman 1999; Naughton et al. 2004). Perhaps the most significant finding coming from this body of research was that the native northern pikeminnow was the dominant predator of juvenile salmonids in the CRB. Indeed, Beamesderfer et al. (1996) estimated that northern pikeminnow consumed about 16 million (8%) of the estimated 200 million juvenile salmonids emigrating annually in the CRB, far surpassing the consumption of smallmouth bass, walleye, and channel catfish combined. Because of this, large-scale management fisheries (i.e., the northern pikeminnow management program, or NPMP; see Rieman and Beamesderfer 1990; Beamesderfer et al. 1996) have been implemented in the CRB since 1990 to achieve a 10%–20% exploitation rate on northern pikeminnow and reduce predation on juvenile salmonids. The NPMP has been a success, resulting in up to 38% potential reductions in predation (Friesen and Ward 1999; Knutsen and Ward 1999; Ward and Zimmerman 1999;). In contrast to the NPMP, Oregon and Washington state fish and wildlife agencies manage and enhance recreational fisheries for smallmouth bass and walleye by implementing size and harvest limit regulations. Recently, many biologists and fish managers have become concerned about the impact of non-native predaceous fishes on juvenile salmonid survival. For example, Poe et al. (1994) warned that smallmouth bass, walleye, and channel catfish were expanding their populations in some areas, that these fish could be significant predators on juvenile salmonids, and that they may compete with northern pikeminnow for common prey items, resulting in higher consumption rates of salmonids by the native predator. Sanderson et al. (2009) reported that the impact of non-indigenous species (including piscivorous fishes) on salmon survival within the CRB can be severe and suggested that managing nonindigenous species may be imperative for salmon recovery. Assessing the current ecological impacts of introduced fishes throughout the CRB will fill information gaps associated with their impact on salmonid survival and contribute to the description of CRB food webs. In response to these recent concerns about the potential predatory impact of non-native piscivores on salmon survival, the Bonneville Power Administration (BPA) and the Columbia Basin Fish and Wildlife Authority (CBFWA) co-hosted a workshop to address predation on juvenile salmonids in the CRB by non-native fish (Halton 2008). The purpose of the workshop was to review, evaluate, and develop strategies to reduce predation by non-native fishes on juvenile salmonids. In the end, discussion at the workshop and at subsequent meetings considered two potential ideas to reduce predation by non-native fish on juvenile salmonids; (1) understanding the role of juvenile American shad Alosa sapidissima in the diet of non-native predators in the fall; and (2) the effects of localized, intense reductions of smallmouth bass in areas of particularly high salmonid predation. In this report, we describe initial efforts to understand the influence of juvenile American shad as a prey item for introduced predators in the middle Columbia River. Our first objective, addressed in Chapter 1, was to evaluate the efficacy of nonlethal methods to describe the physiological condition of smallmouth bass, walleye, and channel catfish from late summer through late fall. Such information will be used to understand the contribution of juvenile American shad to the energy reserves of predaceous fish prior to winter. In Chapter 2, we describe the results of some limited sampling to document the food habits of smallmouth bass, walleye, and channel catfish in three reservoirs of the middle Columbia River during late fall. Collectively, we hope to increase our understanding of the contribution of juvenile American shad to the diets of introduced predators and the contribution of this diet to their energy reserves, growth, and perhaps over-winter survival. Managers should be able to use this information for deciding whether to control the population of American shad in the CRB or for managing introduced predaceous fish in the CRB.

Oregon, Washington↗
USGS2015

California State Waters map series — Offshore of Pigeon Point, California

Introduction In 2007, the California Ocean Protection Council initiated the California Seafloor Mapping Program (CSMP), designed to create a comprehensive seafloor map of high-resolution bathymetry, marine benthic habitats, and geology within the 3-nautical-mile limit of California’s State Waters. The CSMP approach is to create highly detailed seafloor maps through collection, integration, interpretation, and visualization of swath sonar data, acoustic backscatter, seafloor video, seafloor photography, high-resolution seismic-reflection profiles, and bottom-sediment sampling data. The map products display seafloor morphology and character, identify potential marine benthic habitats, and illustrate both the surficial seafloor geology and shallow subsurface geology. The Offshore of Pigeon Point map area is located in central California, on the Pacific Coast about 50 km south of San Francisco and 25 km northwest of Santa Cruz. The onshore part of the map area is sparsely populated. The nearest significant onshore cultural center is Pescadero, an unincorporated community with a population of well under 1,000. The hilly coastal area is virtually undeveloped, used primarily for agricultural or as grazing land for sheep and cattle. Agriculture is limited to the coastal uplifted Pleistocene marine terraces and upper Pleistocene alluvial fan deposits, which lie between the shoreline and the northwest-trending Santa Cruz Mountains. The map area is cut by the San Gregorio Fault Zone, and is located a few kilometers southwest of the San Andreas Fault Zone. Coastal uplift and folding in the map area has been attributed to a westward bend in the San Andreas Fault Zone and also to right-lateral movement along the San Gregorio Fault Zone. The irregular coastal geomorphology of this area, which consists of low, rocky cliffs and sparse, small pocket beaches backed by low, terraced hills, is partly attributable to this ongoing deformation. The shelf in the map area is underlain by variable amounts (0 to 20 m) of upper Quaternary nearshore and shelf sediments deposited as sea level fluctuated in the late Pleistocene. The southern part of the map is characterized by the presence of uplifted bedrock that has been linked to a local zone of transpression in the San Gregorio Fault Zone. This uplift, coupled with high wave energy, has resulted in little or no sediment cover in this area where exposures of bedrock are present at water depths of as much as 45 m. The thickest deposits of sediment are located in the northern part of the map area. Coastal sediment transport in the map area is characterized by north-to-south littoral transport of sediment that is derived mainly from streams in the Santa Cruz Mountains and also from local coastal erosion. Shoreline-change studies indicate long-term erosion; within the region between San Francisco and Davenport, the highest long- and short-term coastal-erosion rates occur in the map area, just north of Point Año Nuevo. During the last approximately 300 years, as much as 18 million cubic yards (14 million cubic meters) of sand-sized sediment has been eroded from the area between Año Nuevo Island and Point Año Nuevo and transported south. Once widened by this pulse of eroded sediment, beaches south of Point Año Nuevo are now narrowing as the tail end of this mass of sand progresses farther south. The Offshore of Pigeon Point map area lies within the cold-temperate biogeographic zone that is called either the “Oregonian province” or the “northern California ecoregion.” This biogeographic province is maintained by the long-term stability of the southward-flowing California Current, the eastern limb of the North Pacific subtropical gyre that flows from southern British Columbia to Baja California. At its midpoint off central California, the California Current transports subarctic surface (0–500 m deep) waters southward, about 150 to 1,300 km from shore. Seasonal northwesterly winds that are, in part, responsible for the California Current, generate coastal upwelling. The south end of the Oregonian province is at Point Conception (about 335 km south of the map area), although its associated phylogeographic group of marine fauna may extend beyond to the area offshore of Los Angeles in southern California. The ocean off of central California has experienced a warming over the last 50 years that is driving an ecosystem shift away from the productive subarctic regime towards a depopulated subtropical environment. Seafloor habitats in the Offshore of Pigeon Point map area lie within the Shelf (continental shelf) megahabitat. Significant rocky outcrops, which support kelp-forest communities in the nearshore and rocky-reef communities in deeper water, dominate the inner shelf waters. Biological productivity resulting from coastal upwelling supports populations of Sooty Shearwater, Western Gull, Common Murre, Cassin’s Auklet, and many other less populous bird species. In addition, an observable recovery of Humpback and Blue Whales has occurred in the area; both species are dependent on coastal upwelling to provide nutrients. The large extent of exposed inner shelf bedrock supports large forests of “bull kelp,” which is well adapted for high-wave-energy environments. Common fish species found in the kelp beds and rocky reefs include lingcod and various species of rockfish and greenling.

California↗
USGS2011

Removal of nonnative slider turtles (Trachemys scripta) and effects on native Sonora mud turtles (Kinosternon sonoriense) at Montezuma Well, Yavapai County, Arizona

The National Park Service (NPS) estimates that 234 national parks contain nonnative, invasive animal species that are of management concern (National Park Service, 2004). Understanding and controlling invasive species is thus an important priority within the NPS (National Park Service, 1996). The slider turtle (Trachemys scripta) is one such invasive species. Native to the Southeastern United States (Ernst and Lovich, 2009), as well as Mexico, Central America, and portions of South America (Ernst and Barbour, 1989), the slider turtle has become established throughout the continental United States and in other locations around the world (Burke and others, 2000). Slider turtle introductions have been suspected to be a threat to native turtles (Holland 1994; da Silva and Blasco, 1995), however, there has not been serious study of their effects until recently. Cadi and Joly (2003) found that slider turtles outcompeted European pond turtles (Emys orbicularis) for preferred basking sites under controlled experimental conditions, demonstrating for the first time direct competition for resources between a native and an exotic turtle species. Similarly, Spinks and others (2003) suggested that competition for basking sites between slider turtles and Pacific pond turtles (Actinemys marmorata) was partly responsible for the decline of Pacific pond turtles observed at their study site in California. They concluded that the impact of introduced slider turtles was 'almost certainly negative' for the western pond turtle. In the most recent critical study to assess the effects of introduced slider turtles on native turtles, Cadi and Joly (2004) demonstrated that European pond turtles that were kept under experimentally controlled conditions with slider turtles lost body weight and exhibited higher rates of mortality than in control groups of turtles comprised of the same species, demonstrating potential population-level effects on native species. Slider turtles are not native to Arizona but have been introduced in several areas in the southern and central part of the State, including Montezuma Well (the Well). The only native turtle at the Well is the Sonora mud turtle (Kinosternon sonoriense). Interactions between sliders and mud turtles have not been investigated at the Well or elsewhere. However, basking sites preferred by aquatic turtles are rare at the Well, suggesting one potential avenue for resource competition between sliders and Sonora mud turtles. In this study, we collected data on both species to evaluate the possible effects of slider turtles on Sonora mud turtles at Montezuma Well. During live trapping in the spring, summer, and early fall of 2007 and 2008, we removed slider turtles that we captured in the Well. We also collected ecological data on the mud turtles captured in the trapping effort. Separate behavioral observations of the turtles in the Well provided additional information on the ecology of the two species in the unusual environment of the Well, and also of interactions between the sliders and mud turtles. In this report, we describe the results of 2 yr of study of the turtles of Montezuma Well. We incorporate older data on the mud turtles in the Well to assess long-term population trends and potential response to the introduced slider turtles. We also report on aspects of basic ecology for the poorly understood Sonora mud turtle. The National Park Service requested that we incorporate public outreach as part of this research effort, so we also describe the outreach efforts associated with the turtle study.

Open-File Report↗
USGS2024

The potential influence of genome-wide adaptive divergence on conservation translocation outcome in an isolated greater sage-grouse population

Conservation translocations are an important conservation tool commonly employed to augment declining or reestablish extirpated populations. One goal of augmentation is to increase genetic diversity and reduce the risk of inbreeding depression (i.e., genetic rescue). However, introducing individuals from significantly diverged populations risks disrupting coadapted traits and reducing local fitness (i.e., outbreeding depression). Genetic data are increasingly more accessible for wildlife species and can provide unique insight regarding the presence and retention of introduced genetic variation from augmentation as an indicator of effectiveness and adaptive similarity as an indicator of source and recipient population suitability. We used 2 genetic data sets to evaluate augmentation of isolated populations of greater sage-grouse ( Centrocercus urophasianus ) in the northwestern region of the species range (Washington, USA) and to retrospectively evaluate adaptive divergence among source and recipient populations. We developed 2 statistical models for microsatellite data to evaluate augmentation outcomes. We used one model to predict genetic diversity after augmentation and compared these predictions with observations of genetic change. We used the second model to quantify the amount of observed reproduction attributed to transplants (proof of population integration). We also characterized genome-wide adaptive divergence among source and recipient populations. Observed genetic diversity ( H O = 0.65) was higher in the recipient population than predicted had no augmentation occurred ( H O = 0.58) but less than what was predicted by our model ( H O = 0.75). The amount of shared genetic variation between the 2 geographically isolated resident populations increased, which is evidence of periodic gene flow previously assumed to be rare. Among candidate adaptive genes associated with elevated fixation index ( F ST ) (143 genes) or local environmental variables (97 and 157 genes for each genotype–environment association method, respectively), we found clusters of genes with related functions that may influence the ability of transplants to use local resources and navigate unfamiliar environments and their reproductive potential, all possible reasons for low genetic retention from augmentation.

Conservation Biology↗
USGS2023

Two new species of small-eared shrews of the Genus Cryptotis Pomel, 1848, from the Colombian Andes (Mammalia: Eulipotyphla: Soricidae)

Shrews (Mammalia: Eulipotyphla: Soricidae) reach the southern limit of their New World distribution in the Andes and eastern coastal highlands of northern South America. South of Honduras, the family is represented only by species of the genus Cryptotis Pomel, 1848. In South America, soricids are restricted to moist, high-elevation environments above 1000 m, and their distribution appears to be discontinuous. Study of specimens from a previous gap in the known geographical range of shrews in the Central Cordillera of southwestern Colombia reveals the presence of two unique populations that are distinguishable from each other and their congeners by a combination of morphological and morphometrical characters. They are described herein as, Cryptotis huttereri, n. sp. and Cryptotis andinus, n. sp. Both species are members of the Cryptotis thomasi group, one of five species groups of small-eared shrews defined partly on the basis of postcranial morphology and potential locomotor behavior. Although species in the C. thomasi group share similar postcranial architecture, as exemplified by the morphology of the forelimb, the group appears to be polyphyletic, implying convergence in locomotor behavior, possibly one uniquely adapted for Andean-type montane habitats. Recognition of C. huttereri and C. andinus brings the total number of known South American soricids to 19 species, with 11 species occurring in Colombia. Of those, seven species are endemic to that country.

Annals of the Carnegie Museum↗