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USGS2019

Refinement of eDNA as an early monitoring tool at the landscape-level: Study design considerations

Natural resource managers use data on the spatial range of species to guide management decisions. These data come from survey or monitoring efforts that use a wide variety of tools. Environmental DNA (eDNA) is a surveillance tool that uses genetic markers for detecting species and holds potential as a tool for large-scale monitoring programs. Two challenges of eDNA-based studies are uncertainties created by imperfect capture of eDNA in collection samples (e.g., water field samples) and imperfect detection of eDNA using molecular methods (e.g., quantitative PCR). Occurrence models can be used to address these challenges, thus we use an occurrence model to address two objectives: First, determine how many samples were required to detect species using eDNA; Second, examine when and where to take samples. We collected water samples from three different habitat types in the Upper Mississippi River when both Bighead Carp and Silver Carp were known to be present based on telemetry detections. Each habitat type (backwater, tributary, and impoundment) was sampled during April, May and November. Detections of eDNA for both species varied across sites and months, but were generally low, 0 - 19.3% of samples were positive for eDNA. Overall, we found that eDNA-based sampling holds promise to be a powerful monitoring tool for resource managers, however, limitations of eDNA-based sampling include different biological and ecological characteristics of target species such as seasonal habitat usage patterns as well as aspects of different physical environments that impact the implementation of these methods such as water temperature.

Ecological Applications↗

USGS2021

Multiple lines of evidence for identifying potential hazards to fish from contaminants of emerging concern in Great Lakes tributaries

Contaminants of emerging concern (CECs; e.g., pharmaceuticals, flame retardants, pesticides, and industrial chemicals) are omnipresent throughout tributaries to the Great Lakes. Furthermore, CECs are often present at concentrations that are potentially hazardous to aquatic species. Since 2010, we characterized the presence of CECs at 309 sites within 47 Great Lakes tributaries and characterized responses of fathead minnow ( Pimephales promelas ) exposed to river water at a subset of 26 sites within four tributaries. Our work resulted in three independent lines of evidence related to the potential hazards of CEC exposure to fish. First, vulnerability (where vulnerability refers to likelihood) of surface waters to CEC presence was predicted using select watershed characteristics. Second, hazard to fish (where hazard means the potential for adverse biological responses) was predicted using screening values for a subset of CECs. Third, biological responses of fathead minnow exposed to river water in streamside exposures were measured. We assessed the congruence of these three lines of evidence for identifying sites with elevated hazards to CEC exposure. Predicted vulnerability and hazards agreed at 66% of all sites. Where the two indices did not agree, vulnerability often underestimated predicted hazard. When compared with measured biological responses from streamside exposures, predicted hazards agreed for 42% of samples. Furthermore, when predicted hazards for specific effect categories were compared with similar measured biomarkers, 26% and 46% of samples agreed for reproductive and physiological effect categories, respectively. Overall, vulnerability and hazard predictions tended to overestimate the measured biological responses, providing a protective estimate of the potential hazards of CEC exposure to fish. When used together, these three approaches can help resource managers prioritize management activities in minimizing hazards of CEC exposure and can be used by researchers to prioritize studies focused on understanding the hazards of CEC exposure to fish. Integr Environ Assess Manag 2022;18:1246–1259. © 2021 The Authors. Integrated Environmental Assessment and Management published by Wiley Periodicals LLC on behalf of Society of Environmental Toxicology & Chemistry (SETAC). This article has been contributed to by US Government employees and their work is in the public domain in the USA.

Great Lakes↗

USGS2012

Using persuasive messages to encourage hunters to support regulation of lead shot

Lead shot from hunting adds the toxic metal to environments worldwide. The United States banned lead shot for hunting waterfowl in 1991 and 26 states have lead shot restrictions beyond those mandated for waterfowl hunting. The Minnesota Department of Natural Resources (MDNR) was interested in studying hunter attitudes about expanded restrictions on the use of lead shot for hunting small game to understand what communication strategies might increase public support for potential restrictions on lead shot. We mailed messages about lead shot, including 1,200 control messages and 400 of each of 9 treatment messages, and surveys to 4,800 resident small game hunters. We compared attitudes and intentions related to a possible ban among control and treatment groups. Compared to the control message, all treatment messages elicited more positive attitudes and intentions to support a ban. A basic factual message, messages with references to Ducks Unlimited, and a first-person narrative message generated the strongest support for a ban. Results also demonstrated a substantial relationship between the use of lead shot and response to persuasive messages supporting a ban.

Journal of Wildlife Management↗

USGS2021

An attention U-Net model for detection of fine-scale hydrologic streamlines

Surface water is an irreplaceable resource for human survival and environmental sustainability. Accurate, finely detailed cartographic representations of hydrologic streamlines are critically important in various scientific domains, such as assessing the quantity and quality of present and future water resources, modeling climate changes, evaluating agricultural suitability, mapping flood inundation, and monitoring environmental changes. Conventional approaches to detecting such streamlines cannot adequately incorporate information from the complex three-dimensional (3D) environment of streams and land surface features. Such information is vital to accurately delineate streamlines. In recent years, high accuracy lidar data has become increasingly available for deriving both 3D information and terrestrial surface reflectance. This study develops an attention U-net model to take advantage of high-accuracy lidar data for finely detailed streamline detection and evaluates model results against a baseline of multiple traditional machine learning methods. The evaluation shows that the attention U-net model outperforms the best baseline machine learning method by an average F1 score of 11.25% and achieves significantly better smoothness and connectivity between classified streamline channels. These findings suggest that our deep learning approach can harness high-accuracy lidar data for fine-scale hydrologic streamline detection, and in turn produce desirable benefits for many scientific domains.

North Carolina↗

USGS2005

The challenges associated with developing science-based landscape scale management plans

Planning activities over large landscapes poses a complex of challenges when trying to balance the implementation of a conservation strategy while still allowing for a variety of consumptive and nonconsumptive uses. We examine a case in southeast Alaska to illustrate the breadth of these challenges and an approach to developing a science-based resource plan. Not only was the planning area, the Tongass National Forest, USA, exceptionally large (approximately 17 million acres or 6.9 million ha), but it also is primarily an island archipelago environment. The water system surrounding and going through much of the forest provides access to facilitate the movement of people, animals, and plants but at the same time functions as a barrier to others. This largest temperate rainforest in the world is an exceptional example of the complexity of managing at such a scale but also illustrates the role of science in the planning process. As we enter the 21st century, the list of questions needing scientific investigation has not only changed dramatically, but the character of the questions also has changed. Questions are contentious, cover broad scales in space and time, and are highly complex and interdependent. The provision of unbiased and objective information to all stakeholders is an important step in informed decision-making.

Landscape and Urban Planning↗

USGS2015

Forecasting wildlife response to rapid warming in the Alaskan Arctic

Arctic wildlife species face a dynamic and increasingly novel environment because of climate warming and the associated increase in human activity. Both marine and terrestrial environments are undergoing rapid environmental shifts, including loss of sea ice, permafrost degradation, and altered biogeochemical fluxes. Forecasting wildlife responses to climate change can facilitate proactive decisions that balance stewardship with resource development. In this article, we discuss the primary and secondary responses to physical climate-related drivers in the Arctic , associated wildlife responses, and additional sources of complexity in forecasting wildlife population outcomes. Although the effects of warming on wildlife populations are becoming increasingly well documented in the scientific literature, clear mechanistic links are often difficult to establish. An integrated science approach and robust modeling tools are necessary to make predictions and determine resiliency to change. We provide a conceptual framework and introduce examples relevant for developing wildlife forecasts useful to management decisions. © 2015 Published by Oxford University Press on behalf of the American Institute of Biological Sciences 2014. This work is written by US Government employees and is in the public domain in the US.

Alaska↗

USGS2018

Common hydraulic fracturing fluid additives alter the structure and function of anaerobic microbial communities

The development of unconventional oil and gas (UOG) resources results in the production of large volumes of wastewater containing a complex mixture of hydraulic fracturing chemical additives and components from the formation. The release of these wastewaters into the environment poses potential risks that are poorly understood. Microbial communities in stream sediments form the base of the food chain and may serve as sentinels for changes in stream health. Iron-reducing organisms have been shown to play a role in the biodegradation of a wide range of organic compounds, and so to evaluate their response to UOG wastewater, we enriched anaerobic microbial communities from sediments collected upstream (background) and downstream (impacted) of an UOG wastewater injection disposal facility in the presence of hydraulic fracturing fluid (HFF) additives: guar gum, ethylene glycol, and two biocides, 2,2-dibromo-3-nitrilopropionamide (DBNPA) and bronopol (C 3 H 6 BrNO 4 ). Iron reduction was significantly inhibited early in the incubations with the addition of biocides, whereas amendment with guar gum and ethylene glycol stimulated iron reduction relative to levels in the unamended controls. Changes in the microbial community structure were observed across all treatments, indicating the potential for even small amounts of UOG wastewater components to influence natural microbial processes. The microbial community structure differed between enrichments with background and impacted sediments, suggesting that impacted sediments may have been preconditioned by exposure to wastewater. These experiments demonstrated the potential for biocides to significantly decrease iron reduction rates immediately following a spill and demonstrated how microbial communities previously exposed to UOG wastewater may be more resilient to additional spills.

Applied and Environmental Microbiology↗

USGS2016

The social, economic, and environmental importance of inland fish and fisheries

Though reported capture fisheries are dominated by marine production, inland fish and fisheries make substantial contributions to meeting the challenges faced by individuals, society, and the environment in a changing global landscape. Inland capture fisheries and aquaculture contribute over 40% to the world’s reported finfish production from less than 0.01% of the total volume of water on earth. These fisheries provide food for billions and livelihoods for millions of people worldwide. Herein, using supporting evidence from the literature, we review 10 reasons why inland fish and fisheries are important to the individual (food security, economic security, empowerment), to society (cultural services, recreational services, human health and well-being, knowledge transfer and capacity building), and to the environment (ecosystem function and biodiversity, as aquatic “canaries”, the “green food” movement). However, the current limitations to valuing the services provided by inland fish and fisheries make comparison with other water resource users extremely difficult. This list can serve to demonstrate the importance of inland fish and fisheries, a necessary first step to better incorporating them into agriculture, land-use, and water resource planning, where they are currently often underappreciated or ignored.

Environmental Reviews↗

USGS2008

Geologic resource evaluation of Kaloko-Honokohau National Historical Park, Hawai'i: Geology and coastal landforms

Geologic resource inventories of lands managed by the National Park Service (NPS) are important products for the parks and are designed to provide scientific information to better manage park resources. Park-specific geologic reports are used to identify geologic features and processes that are relevant to park ecosystems, evaluate the impact of human activities on geologic features and processes, identify geologic research and monitoring needs, and enhance opportunities for education and interpretation. These geologic reports are planned to provide a brief geologic history of the park and address specific geologic issues that link the park geology and the resource manager. The Kona coast National Parks of the Island of Hawai'i are intended to preserve the natural beauty of the Kona coast and protect significant ancient structures and artifacts of the native Hawaiians. Pu'ukohola Heiau National Historic Site (PUHE), Kaloko-Honokohau National Historical Park (KAHO), and Pu'uhonua O Honaunau National Historical Park (PUHO) are three Kona parks studied by the U.S. Geological Survey (USGS) Coastal and Marine Geology Team in cooperation with the National Park Service. This report is one of six related reports designed to provide geologic and benthic-habitat information for the three Kona parks. Each geology and coastal-landform report describes the regional geologic setting of the Hawaiian Islands, gives a general description of the geology of the Kona coast, and presents the geologic setting and issues for one of the parks. The related benthic-habitat mapping reports discuss the marine data and habitat classification scheme, and present results of the mapping program. Kaloko-Honokohau National Historical Park (KAHO) was established in 1978 in order to preserve and protect traditional native Hawaiian culture and cultural sites. The park is the site of an ancient Hawaiian settlement, occupies 469 ha and is considered a locale of considerable cultural and historical significance. Cultural resources include fishponds, petroglyphs and a heiau (religious site). The fishponds are also recognized as exceptional birding areas and are important wetlands for migratory birds. The ocean and reef have been designated as a Marine Area Reserve, where green sea turtles commonly come ashore to rest. The park is also a valuable recreational resource, with approximately 4 km of coastline and a protective cove ideal for snorkeling and swimming. KAHO park boundaries extend beyond the mean high tide line and include the adjacent marine environment. An accompanying report for KAHO presents the results of benthic habitat mapping of the offshore waters, from the shoreline to approximately 40 m water depth. Ground-water quality and potential downslope impacts created by development around the park are of concern to Park management.

Hawaii↗

USGS2015

Benthic response to water quality and biotic pressures in lower south San Francisco Bay, Alviso Slough, and Coyote Creek

Benthic invertebrate communities are monitored because the composition of those communities can effect and be affected by the water quality of an aquatic system. Benthic communities use and sometimes regulate the cycling of essential elements (for example, carbon). Benthic invertebrate taxa may also indicate acutely and chronically stressful environments because they are mostly sessile, accumulate contaminants, and sometimes respond dramatically to oligotrophic as well as eutrophic conditions. Benthic communities can in turn affect water quality by grazing pelagic food resources and increasing the rate of nutrient regeneration through feeding and bioturbating the sediment. South San Francisco Bay is a system dependent on phytoplankton as the base to the food web. Despite abundant nutrients, south San Francisco Bay has had limited phytoplankton production in the last several decades owning to poor light conditions and high grazing losses from the water column by benthic invertebrates. The south San Francisco Bay achieves a balance of biogeochemical conditions in most springs to accommodate a short phytoplankton bloom. This balance has maintained the phytoplankton in south San Francisco Bay at low biomass levels relative to other high-nutrient urban estuaries. The role that benthic invertebrates play in this balance, in these episodic spring events, and in other seasons within the estuary remains of great interest to water-quality and biological resource managers. Our primary objective in this study is to quantify current (2014) benthic-community structure and function in the south San Francisco Bay sloughs and to compare those communities temporally over decadal time scales with a unique long-term dataset. The study area (fig. 1) is inclusive of the area south of the Dumbarton Bridge (DB) including Alviso and Guadalupe Sloughs and Coyote Creek. The following are results highlighted in this report: The benthic communities of Coyote Creek and Alviso, Guadalupe, and Artesian Sloughs were dominated by different organisms but similar functional groups in March, June, and September 2014. Coyote Creek stations (D3 and CC1) had a similar increase in Potamocorbula amurensis biomass followed by a decline in 2014, as was observed annually in the south San Francisco Bay since 1999. The lack of grazing pressure owing to the observed declines in these taxa in 2014 may allow the sloughs to become sources of phytoplankton in spring. Bivalve biomass is elevated in summer and fall relative to the spring and winter except in Artesian Slough, where bivalves did not establish a signifcant presence. Presence of certain species contributes to the prey value of the community to predators. Potamocorbula amurensis is a shallow-burrowing bivalve and hence is easy prey for bottom-feeding predators. In contrast, Macoma petalum is a deposit feeder and can burrow deeper into the substrate than Potamocorbula amurensis , making it harder to be preyed upon. The quantitative importance of such predator-prey relationships on phytoplankton dynamics requires further investigation. There were also more amphipods in the sloughs in March 2014; this group is another potential contributor to the benthic-pelagic biomass balance. There is no observed reason for Artesian Slough to have low bivalve biomass values and high amphipod abundances.

California↗

USGS2017

The Wetland and Aquatic Research Center strategic science plan

Introduction The U.S. Geological Survey (USGS) Wetland and Aquatic Research Center (WARC) has two primary locations (Gainesville, Florida, and Lafayette, Louisiana) and field stations throughout the southeastern United States and Caribbean. WARC’s roots are in U.S. Fish and Wildlife Service (USFWS) and National Park Service research units that were brought into the USGS as the Biological Research Division in 1996. Founded in 2015, WARC was created from the merger of two long-standing USGS biology science Centers—the Southeast Ecological Science Center and the National Wetlands Research Center—to bring together expertise in biology, ecology, landscape science, geospatial applications, and decision support in order to address issues nationally and internationally. WARC scientists apply their expertise to a variety of wetland and aquatic research and monitoring issues that require coordinated, integrated efforts to better understand natural environments. By increasing basic understanding of the biology of important species and broader ecological and physiological processes, this research provides information to policymakers and aids managers in their stewardship of natural resources and in regulatory functions. This strategic science plan (SSP) was developed to guide WARC research during the next 5–10 years in support of Department of the Interior (DOI) partnering bureaus such as the USFWS, the National Park Service, and the Bureau of Ocean Energy Management, as well as other Federal, State, and local natural resource management agencies. The SSP demonstrates the alignment of the WARC goals with the USGS mission areas, associated programs, and other DOI initiatives. The SSP is necessary for workforce planning and, as such, will be used as a guide for future needs for personnel. The SSP also will be instrumental in developing internal funding priorities and in promoting WARC’s capabilities to both external cooperators and other groups within the USGS.

Open-File Report↗

USGS2022

California Deepwater Investigations and Groundtruthing (Cal DIG) I, volume 3 — Benthic habitat characterization offshore Morro Bay, California

Coastal and Marine Ecological Classification Standard (CMECS) geoform, substrate, and biotic component geographic information system (GIS) products were developed for the U.S. Exclusive Economic Zone (U.S. EEZ) of south-central California in the region of Santa Lucia Bank motivated by interest in development of offshore wind-energy capacity and infrastructure. The Bureau of Ocean Energy Management (BOEM), in coordination with the State of California and many other members of the California Task Force, issued calls for information in 2018 for the study area offshore of Morro Bay, California. The study area is in depths of 500 to 1,200 meters (m) and adjacent to a decommissioned nuclear power plant with a developed electric grid connection, and in an area of high wind resource. BOEM is the lead agency responsible for planning and leasing in the U.S. EEZ and funded this project to assess baseline conditions of, and the potential effects on, the seafloor environment. This project, carried out by the U.S. Geological Survey (USGS), resulted in three reports: one on biological analysis of seafloor video data, one on analysis of the geologic framework and hazards, and this report on seafloor habitat. The study area consists of 8,424 square kilometers (km 2 ) of multibeam echo sounder (MBES) data acquired during five surveys from 2016 to 2019. Remotely operated vehicle (ROV) video was acquired in 2019 to supervise the classification of the MBES data into habitats. Derivatives of the MBES data were classified into 16 unique biotopes, 6 substrate types, 28 modifier groups, and 22 geoforms. The study area substrate is predominantly soft sediment (mud and fine sand) covering 7,804 km 2 (92.7 percent) of the area. Mixed substrate areas on rocky banks, channel scarps, and the shelf break comprise 404 km 2 (4.8 percent) of the study area. Hard substrate areas are found predominantly on the tops and flanks of banks and on bank ridges that separate canyons incising the banks. Hard substrates comprise 211 km 2 of the study area (2.5 percent). After the bathymetry and backscatter raster images (rasters) were classified, manual editing was also done to remove noise artifacts. This effort was not completely successful and there are numerous erroneous small areas in the rasters that have been passed on to the CMECS polygon product. Nearly 120,000 annotations of organisms and their habitat were made from 25 video transects selected from 185 hours of ROV video. In total, 2,714 km 2 of seafloor were successfully assigned to biotopes. Some biotopes were assigned to separate areas spatially distant from the transects that define the biotope. Expected relations between physical habitat and biota such as the number of species and the substrate induration and rugosity were verified. Slope is typically a predictive variable and was used in the classification of habitat, but the ground truth used for biotic component analysis included very little steeply sloping area. Ground-truth ROV operations were reduced by the sea state; additional ground truth could improve the biotic results and increase confidence in the spatial distribution of classifications reported here.

California↗

USGS2000

Thinking outside the lines: Parks and the quality of life in area communities

Many national parks, national forests, and other public land units exist in highly changeable regional environments. Often the parks and forests themselves serve as important catalysts of change in the levels of tourism, outdoor recreation participation, and contribution of traveling publics to local and regional economies. Resource managers are called upon to protect lands in their jurisdictions while juggling a variety of inputs and expectations. In each agency, resource decisions are bound by law and agency policy. In this context, the decision space of the national park manager is quite different from that of those in multiple-use land management agencies. Management actions must stand up, not only to law and policy and to scientific scrutiny, but they must also be sensitive to the needs of residents in surrounding communities, to county and state governing bodies, and to visitors from across the nation and around the world. Balancing these needs while protecting resources in an ongoing challenge made more difficult as the mix of stakeholders growsa?|

Park Science↗

USGS1989

Geology and water resources of Owens Valley, California

Owens Valley, a long, narrow valley located along the east flank of the Sierra Nevada in east-central California, is the main source of water for the city of Los Angeles. The city diverts most of the surface water in the valley into the Owens River-Los Angeles Aqueduct system, which transports the water more than 200 miles south to areas of distribution and use. Additionally, ground water is pumped or flows from wells to supplement the surface-water diversions to the river-aqueduct system. Pumpage from wells needed to supplement water export has increased since 1970, when a second aqueduct was put into service, and local concerns have been expressed that the increased pumpage may have had a detrimental effect on the environment and the indigenous alkaline scrub and meadow plant communities in the valley. The scrub and meadow communities depend on soil moisture derived from precipitation and the unconfined part of a multilayered aquifer system. This report, which describes the hydrogeology of the aquifer system and the water resources of the valley, is one in a series designed to (1) evaluate the effects that ground-water pumping has on scrub and meadow communities and (2) appraise alternative strategies to mitigate any adverse effects caused by pumping. Two principal topographic features are the surface expression of the geologic framework--the high, prominent mountains on the east and west sides of the valley and the long, narrow intermountain valley floor. The mountains are composed of sedimentary, granitic, and metamorphic rocks, mantled in part by volcanic rocks as well as by glacial, talus, and fluvial deposits. The valley floor is underlain by valley fill that consists of unconsolidated to moderately consolidated alluvial fan, glacial and talus, and fluvial and lacustrine deposits. The valley fill also includes interlayered recent volcanic flows and pyroclastic rocks. The bedrock surface beneath the valley fill is a narrow, steep-sided graben that is structurally separated into the Bishop Basin to the north and the Owens Lake Basin to the south. These two structural basins are separated by (1) a bedrock high that is the upper bedrock block of an east-west normal fault, (2) a horst block of bedrock (the Poverty Hills), and (3) Quaternary basalt flows and cinder cones that intercalate and intrude the sedimentary deposits of the valley fill. The resulting structural separation of the basins allowed separate development of fluvial and lacustrine depositional systems in each basin. Nearly all the ground water in Owens Valley flows through and is stored in the saturated valley fill. The bedrock, which surrounds and underlies the valley fill, is virtually impermeable. Three hydrogeologic units compose the valley-fill aquifer system, a defined subdivision of the ground-water system, and a fourth represents the valley fill below the aquifer system and above the bedrock. The aquifer system is divided into horizontal hydrogeologic units on the basis of either (1) uniform hydrologic characteristics of a specific lithologic layer or (2) distribution of the vertical hydraulic head. Hydrogeologic unit 1 is the upper unit and represents the unconfined part of the system, hydrogeologic unit 2 represents the confining unit (or units), and hydrogeologic unit 3 represents the confined part of the aquifer system. Hydrogeologic unit 4 represents the deep part of the ground-water system and lies below the aquifer system. Hydrogeologic unit 4 transmits or stores much less water than hydrogeologic unit 3 and represents either a moderately consolidated valley fill or a geologic unit in the valley fill defined on the basis of geophysical data. Nearly all the recharge to the aquifer system is from infiltration of runoff from snowmelt and rainfall on the Sierra Nevada. In contrast, little recharge occurs to the system by runoff from the White and Inyo Mountains or from direct precipitation on the valley floor. Ground water flows from the margins of the valley towards the center of the valley; the ground water then flows south to the terminus of the system at Owens (dry) Lake. Ground water flows south from Bishop Basin to Owens Lake Basin through the narrows that constrict the flow opposite Poverty Hills. The aquifer system in the northern half of Owens Lake Basin is divided into east and west halves by the barrier effect caused by the Owens Valley fault. Discharge from the aquifer system is primarily by pumpage and evapotranspiration, and to a lesser extent by flowing wells, springs, underflow, and leakage to the Owens River-Los Angeles aqueduct system. Withdrawals from pumped or flowing wells is the largest component of discharge and accounts for about 50 percent of the outflow from the system. Transpiration by scrub and meadow plant communities, and to a lesser extent by irrigated alfalfa pasture, accounts for about 40 percent of the system's discharge. Natural hydraulic conductivity ranges from less than 400 to about 12,000 feet per day in the basalt flows, the more permeable material in the aquifer system. Where the basalts are fractured by explosives and drilling techniques, actual transmissivities can be greater than 1,000,000 feet squared per day. Hydraulic conductivities in sedimentary deposits of the aquifer system range from less than a few feet per day in lacustrine clays to more than 300 feet per day in gravel stringers and beach deposits in the transition zone between alluvial fan deposits and fluvial and lacustrine deposits. Degree of confinement in the aquifer system generally increases to the south and east in both the Bishop and Owens Lake Basins. The vertical hydraulic gradient across hydrogeologic unit 2 and confining beds in hydrogeologic units 1 and 3 is a function of (1) the asymmetric recharge and hydraulic head created by the dominant recharge from Sierra Nevada runoff and (2) the areal extent and thickness of the confining beds. Although most of the pumpage is from hydrogeologic unit 3, some coincident drawdown has been recorded in nonpumped wells that tap unit 1. Drawdown in hydrogeologic unit 1 is a function of changes in (1) lateral flow through hydrogeologic unit 1, (2) upward flow of ground water through the confining beds, (3) downward leakage of water from hydrogeologic unit 1 to unit 3 through wells, (4) direct withdrawal from well intervals open to hydrogeologic unit 1, and (5) increased evapotranspiration. The water in the aquifer system is generally of excellent quality for public supply and irrigation, with the exception of water stored in thick sequences of lacustrine silts and clays near Owens Lake. The water is principally a calcium bicarbonate type and dissolved-solids concentrations range from approximately 104 to 325 milligrams per liter. Water in the lacustrine sediments of Owens (dry) Lake is a sodium bicarbonate type and dissolved-solids concentrations are about 5,400 milligrams per liter.

California↗

USGS1991

Geology and water resources of Owens Valley, California

Water Supply Paper↗

USGS1989

Studies of geology and hydrology in the Basin and Range Province, Southwestern United States, for isolation of high-level radioactive waste - Basis of characterization and evaluation

The geologic and hydrologic factors in selected regions of the Basin and Range province were examined to identify prospective areas for further study that may provide isolation of high-level radioactive waste from the accessible environment. The six regions selected for study were characterized with respect to the following guidelines: (1) Potential repository media; (2) Quaternary tectonic conditions; (3) climatic change and geomorphic processes; (4) ground-water conditions; (5) ground-water quality; and (6) mineral and energy resources. The repository medium will function as the first natural barrier to radionuclide travel by virtue of associated slow ground-water velocity. The principal rock types considered as host media include granitic, intermediate, and mafic intrusive rocks; argillaceous rocks; salt and anhydrite; volcanic mudflow (laharic) breccias; some intrusive rhyolitic plugs and stocks; partially zeolitized tuff; and metamorphic rocks. In the unsaturated zone, the permeability and hydrologic properties of the rocks and the hydrologic setting are more important than the rock type. Media ideally should be permeable to provide drainage and should have a minimal water flux The ground-water flow path from a repository to the accessible environment needs to present major barriers to the transport of radionuclides. Factors considered in evaluating the ground-water conditions include ground-water traveltimes and quality, confining beds, and earth materials favorable for retardation of radionuclides. Ground-water velocities in the regions were calculated from estimated hydraulic properties of the rocks and gradients. Because site-specific data on hydraulic properties are not available, data from the literature were assembled and synthesized to obtain values for use in estimating ground-water velocities. Hydraulic conductivities for many rock types having granular and fracture permeability follow a log-normal distribution. Porosity for granular and very weathered crystalline rock tends to be normally distributed; porosity of fractured crystalline rock probably follows a log-normal distribution. The tectonic setting needs to prevent an increase in radionuclides to the accessible environment. Data on historic seismicity and heat flow, Quaternary faults, volcanism, and uplift were used to assess the tectonic conditions. Long-term late Cenozoic rates of vertical crustal movement in the Basin and Range province range from less than 2 meters per 104 years to greater than 20 meters per 104 years. Shortterm rates of vertical movement may be more than an order of magnitude greater, based on geodetic leveling. Changes in tectonic and climatic processes may potentially cause changes in hydrologic conditions and geomorphology that could affect the integrity of a deep, mined repository either adversely or beneficially. The transition from a full-glacial climate to the current interglacial condition has occurred within the past 15,000 years. Reconstructions of the last full-glacial climate indicate that, at that time, there was greater water availability for runoff and vegetation growth than there is now. Based on the increased water availability and depending on seasonal distribution of precipitation, on soil characteristics, on topography, and on other characteristics, ground-water recharge during the full-glacial climate is estimated to have been possibly 2 to 10 or more times the modern rate. During the full-glacial climate, more than 100 lakes occupied closed basins in the province. Any increase in ground-water recharge and refilling of Pleistocene lakes will tend to decrease the distance of ground-water flow and its time of travel. The unsaturated zone this zone is considered a potential host medium where the thickness is greater than 150 m will be decreased by these changes. In contrast, incision of streams and other geomorphic, tectonic, or climatically induced changes that lower the ground-water discharge level will tend to increase the thickness of the unsaturated zone. Aggradation in basinal troughs may either decrease or increase the thickness of the unsaturated zone. Aggradation in basins that causes the ground-water discharge level to rise will tend to decrease the thickness of unsaturated zone in the adjacent uplands; aggradation in basins where the ground-water discharge level remains the same or is lowered will increase the unsaturated thickness of basin fill. Records show that, throughout late Cenozoic time in the Basin and Range province, continued vertical crustal movements have tended to maintain mountain ranges and closed basins, whereas aggradation of the basins and erosion of the mountain ranges have tended to decrease the topographic relief. Maximum rates of denudation for small basins in areas climatically similar to the Basin and Range province are about 2 meters per 104 years. For sites unaffected by stream incision and scarp retreat, a conservative estimate of erosion affecting long-term changes in depth of burial would appear to be 2 meters per 104 years, or, equal to the long-term rate of vertical crustal movement where greater than 2 meters per 104 years. The response of the ground-water conditions to climatic and geomorphically induced boundary conditions is significant from the points of: (1) The potential maximum change in the ground-water flow system; (2) the time of response of the ground-water system; and (3) the present state of the ground-water system as a result of past changes. Effects of longterm climatic and tectonic changes on hydrologic and geomorphic conditions differ from area to area, and rates of change of geomorphic and hydrologic conditions may vary significantly. Therefore, sitespecific studies need to be made to assess the long-term integrity of deep, mined repositories.

Arizona, California, Idaho, Nevada, New Mexico, Te↗

USGS2016

Does resolution of flow field observation influence apparent habitat use and energy expenditure in juvenile coho salmon?

This study investigated how the resolution of observation influences interpretation of how fish, juvenile Coho Salmon ( Oncorhynchus kisutch ), exploit the hydraulic environment in streams. Our objectives were to evaluate how spatial resolution of the flow field observation influenced: (1) the velocities considered to be representative of habitat units; (2) patterns of use of the hydraulic environment by fish; and (3) estimates of energy expenditure. We addressed these objectives using observations within a 1:1 scale physical model of a full-channel log jam in an outdoor experimental stream. Velocities were measured with Acoustic Doppler Velocimetry at a 10 cm grid spacing, whereas fish locations and tailbeat frequencies were documented over time using underwater videogrammetry. Results highlighted that resolution of observation did impact perceived habitat use and energy expenditure, as did the location of measurement within habitat units and the use of averaging to summarize velocities within a habitat unit. In this experiment, the range of velocities and energy expenditure estimates increased with coarsening resolution (grid spacing from 10 to 100 cm), reducing the likelihood of measuring the velocities locally experienced by fish. In addition, the coarser resolutions contributed to fish appearing to select velocities that were higher than what was measured at finer resolutions. These findings indicate the need for careful attention to and communication of resolution of observation in investigating the hydraulic environment and in determining the habitat needs and bioenergetics of aquatic biota.

Water Resources Research↗

USGS2016

Spatially explicit feedbacks between seagrass meadow structure, sediment and light: Habitat suitability for seagrass growth

In shallow coastal bays where nutrient loading and riverine inputs are low, turbidity, and the consequent light environment are controlled by resuspension of bed sediments due to wind-waves and tidal currents. High sediment resuspension and low light environments can limit benthic primary productivity; however, both currents and waves are affected by the presence of benthic plants such as seagrass. This feedback between the presence of benthic primary producers such as seagrass and the consequent light environment has been predicted to induce bistable dynamics locally. However, these vegetated areas influence a larger area than they footprint, including a barren adjacent downstream area which exhibits reduced shear stresses. Here we explore through modeling how the patchy structure of seagrass meadows on a landscape may affect sediment resuspension and the consequent light environment due to the presence of this sheltered region. Heterogeneous vegetation covers comprising a mosaic of randomly distributed patches were generated to investigate the effect of patch modified hydrodynamics. Actual cover of vegetation on the landscape was used to facilitate comparisons across landscape realizations. Hourly wave and current shear stresses on the landscape along with suspended sediment concentration and light attenuation characteristics were then calculated and spatially averaged to examine how actual cover and mean water depth affect the bulk sediment and light environment. The results indicate that an effective cover, which incorporates the sheltering area, has important controls on the distributions of shear stress, suspended sediment, light environment, and consequent seagrass habitat suitability. Interestingly, an optimal habitat occurs within a depth range where, if actual cover is reduced past some threshold, the bulk light environment would no longer favor seagrass growth.

Advances in Water Resources↗