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USGS2022

Circumpolar patterns of Arctic freshwater fish biodiversity: A baseline for monitoring

Climate change, biological invasions, and anthropogenic disturbance pose a threat to the biodiversity and function of Arctic freshwater ecosystems. Understanding potential changes in fish species distribution and richness is necessary, given the great importance of fish to the function of freshwater ecosystems and as a resource to humans. However, information gaps limit large-scale studies and our ability to determine patterns and trends in space and time. This study takes the first step in determining circumpolar patterns of fish species richness and composition, which provides a baseline to improve both monitoring and conservation of Arctic freshwater biodiversity. Information on species presence/absence was gathered from the Circumpolar Biodiversity Monitoring Program's Freshwater Database and used to examine patterns of freshwater fish γ-, α-, and β-diversity across 234° of longitude in the Arctic. The metrics of diversity provided information on species richness and composition across hydrobasins, ecoregions, and Arctic zones. Circumpolar patterns of fish species biodiversity varied with latitude, isolation, and coarse ecoregion characteristics; patterns were consistent with historic and contemporary barriers to colonisation and environmental characteristics. Gamma-diversity was lower in the high Arctic compared to lower latitude zones, but α-diversity did not decrease with increasing latitude below 71°N, reflecting glacial history. Alpha-diversity was reduced to a single species, Arctic charr Salvelinus alpinus , in ecoregions above 71°N, where γ-diversity was the lowest. Beta-diversity indicated little variation in the composition and richness of species across the High Arctic; at lower latitudes, ecoregions contained more species, although species composition turned over across large spatial extents. In an analysis of five ecoregions in the circumpolar Arctic, physical isolation, and ecoregion area and topography were identified as strong drivers of γ-, α-, and β-diversity. Physical isolation reduced the γ- and α-diversity, and changes in β-diversity between adjacent locations were due mainly to losses in species richness, rather than due to differences in species composition. Heterogeneity of habitats, environmental gradients, and geographic distance probably contributed to patterns of fish dissimilarity within and across ecoregions. This study presents the first analysis of large-scale patterns of freshwater fish biodiversity in the circumpolar Arctic. However, information gaps in space, time, and among taxonomic groups remain. Future inclusion of extensive archive and new data will allow future studies to test for changes and drivers of the observed patterns of biodiversity. This is important given the potential impacts of ongoing and accelerating climate change, land use, and biotic exchange on Arctic fish biodiversity.

Freshwater Biology↗

USGS2009

Analysis of Dissolved Selenium Loading from Surface Water and Groundwater to Sweitzer Lake, Colorado, 2006-07

Elevated selenium concentrations in streams are a water-quality concern in western Colorado. Sweitzer Lake was placed on the State 303(d) list as impaired with respect to dissolved selenium. In Colorado, the Water Quality Control Division of the Colorado Department of Public Health and Environment is required to develop total maximum daily loads of selenium for the 303(d) list segments. The U.S. Geological survey, in cooperation with the Colorado Department of Public Health and Environment, summarized selenium loading from surface water and ground water to Sweitzer Lake to support the total maximum daily loads development process. Surface-water and groundwater data were collected to quantify selenium concentrations and loads to Sweitzer Lake from October 2006 to October 2007. These data were used to determine the amount of selenium load (pounds annually) that would need to be reduced for the contributing sources (surface water and groundwater) to meet the State chronic aquatic-life standard of 4.6 micrograms per liter for dissolved selenium, herein referred to as 'a load reduction.' Selenium concentration data were also compared to the State acute aquatic-life standard of 18.4 micrograms per liter for dissolved selenium. Both surface-water and groundwater-quality samples collected during this study were found to exceed the chronic standard. Surface-water quantity and quality data were collected at Garnet Canal Diversion and Diversion Drain. Groundwater flux data were collected at 10 seepage-meter sires in Sweitzer Lake, and groundwater-quality data were collected at a groundwater seep and inferred from a January 2007 sample collected at Garnet Canal Diversion. Selenium concentrations and loads were greater at Garnet Canal Diversion than those observed at Diversion Drain. Approximately one-third of Garnet Canal Diversion-s Streamflow originates from Loutzenhizer Arroyo. Selenium concentrations observed during previous studies at Loutzenhizer Arroyo indicate high selenium concentrations and high selenium loads. All selenium concentrations in samples from Garnet Canal Diversion were greater than the chronic standard and were less that the acute standard during the irrigation season. Seventy-three percent of the annual selenium load at Garnet Canal Diversion would need to be reduced in order to meet the chronic standard. All daily mean selenium concentrations and selenium-concentration samples were greater than the chronic standard at Diversion Drain, but less than the acute standard during the irrigation season. Forty percent of the mean annual selenium loads at Diversion Drain would need to be reduced in order to meet the chronic standard. Estimated groundwater selenium loads and reductions of selenium loads to Sweitzer Lake were estimated using ranges of lake-bottom areas with positive groundwater flux and groundwater selenium concentrations. Estimated annual groundwater selenium load reductions ranged from 0.900 pound of the 1.17 pounds of annual load to 86.3 points of the 88.3 pounds of annual load for the selenium concentration scenarios over the range of lake-bottom areas. Groundwater selenium load and load reductions determined from this study identify the probably minimum and maximum values for these parameters. Further data collection and analysis could refine the range of groundwater selenium loads and load reductions.

Scientific Investigations Report↗

USGS2018

Provenance of invaders has scale-dependent impacts in a changing wetland ecosystem

Exotic species are associated with a variety of impacts on biodiversity, but it is unclear whether impacts of exotic species differ from those of native species with similar growth forms or native species invading disturbed sites. We compared presence and abundance of native and exotic invaders with changes in wetland plant species diversity over a 28-year period by re-surveying 22 ponds to identify factors correlated with observed changes. We also compared communities found within dense patches of native and exotic emergent species with similar habits. Within patches, we found no categorical diversity differences between areas dominated by native or exotic emergent species. At the pond scale, the cover of the exotic grass Phragmites australis best predicted change in diversity and evenness over time, likely owing to its significant increase in coverage over the study period. These changes in diversity and evenness were strongest in younger, less successionally-advanced ponds. Changes associated with cover of P. australis in these ponds were not consistent with expected diversity decreases, but instead with a dampening of diversity gains, such that the least-invaded ponds increased in diversity the most over the study period. There were more mixed effects on evenness, ranging from a reduction in evenness gains to actual losses of evenness in the ponds with highest invader cover. In this wetland complex, the habit, origin and invasiveness of species contribute to diversity responses in a scale- and context-dependent fashion. Future efforts to preserve diversity should focus on preventing the arrival and spread of invaders that have the potential to cover large areas at high densities, regardless of their origin. Future studies should also investigate more thoroughly how changes in diversity associated with species invasions are impacted by other ongoing ecosystem changes.

NeoBiota↗

USGS2021

A more representative community of ecologists

Ecologists play a crucial role in providing solutions to the challenges facing the world. For most of the history of the field, however, the science of ecology has been pursued by white men, and increasingly, by white women. This lack of diversity is untenable today, not only because it is socially unjust, but also because solving environmental problems requires diversity. Ecology as a science is an extremely rewarding and fun career choice for many, but how can the field recruit a more diverse workforce to do this important and gratifying work? Attracting and retaining future ecologists of color is the focus of this Forum. How do young people choose a career in ecology and environmental sciences? For many ecologists, environmental scientists and managers, and future natural resource professionals, an early field experience provides a crucial introduction and gateway. A sojourn at a field station, an extended field trip, or field expedition has introduced many of today’s professionals to their fields, but at the same time, a growing literature documents problematic behavior, discrimination, and other forms of harassment that have been far too frequently reported, and little attention has been given to conscious or implicit exclusion of students from diverse backgrounds. In their lead article, Bowser and Cid, two leading researchers and long-time champions of diversity in ecology, build on experience in long-running programs as well as the literature to diagnose challenges facing diverse youth, and present approaches to encourage, rather than discourage, further engagement. They describe affirmative and creative measures that foster a sense of inclusion and community among young scholars; this sense of belonging and empowerment allows many to advance to studies and careers in ecology and environmental science. In the subsequent six papers, authors explore topics either responding to, or inspired by, the lead paper. They explore alternatives to a field experience as a gateway to a career in ecology or environmental sciences through, for example, data science or the social sciences. Other comment papers describe challenges faced in the next phases of an academic career, barriers faced by specific cultural groups and the approaches, challenges, and outcomes of programs aiming to increase the diversity of the environmental STEM workforce. All responses sound a clarion call for change to hear and value different voices and perspectives to be heard and valued. These include (1) structural and cultural change to our institutions and reward structures; (2) developing and nurturing personal relationships among students and their mentors, within teams and in internships; (3) making entry to ecology inviting and making advancement in ecology free from systemic barriers; and (4) broadening our vision of ecology, and the ways we learn about the world’s ecosystems. The Ecological Society of America, the home for Ecological Applications , is committed to the diversity, equity and inclusion needed to tackle environmental challenges in unity (https://www.esa.org/esablog/2020/09/24/time-for-action-esa-initiates-a-diversity-equity-inclusion-and-justice-deij-task-force/). The world needs all available talent and perspectives to meet environmental challenges today. Ecological Applications has long published occasional papers on the profession of ecology and never ones more important or timely than these. The editorial team is proud to provide an outlet for the voices of our field, in all its current, if inadequate, diversity and honored to host the passionate and committed views of our authors.

Ecological Applications↗

USGS2021

The role of habitat heterogeneity and canyon processes in structuring sediment macrofaunal communities associated with hard substrate habitats in Norfolk Canyon, USA

Topographic and hydrodynamic complexity in submarine canyons promotes steep gradients in food availability and geophysical parameters which affect ecological assemblages and beta diversity. While habitat heterogeneity in submarine canyons is known to support diverse and abundant megafaunal communities, due to difficulty in sampling little is known about infaunal communities adjacent to hard substrate habitats, their contribution to canyon assemblages, and overall deep-sea diversity. Sediments were collected in three distinct habitat types: within Norfolk Canyon (western Atlantic) adjacent to hard substrate habitats including canyon walls and large boulders, along the main axis of the canyon, and on the adjacent continental slope to quantify macrofaunal (>300 μm) density, diversity and community composition, and sediment geochemical parameters including grain size, organic content, and stable isotope composition. While macrofaunal densities were similar among habitats sampled at comparable depths, diversity was higher near the hard substrate environments. Discrete communities were present in each habitat type, while annelid functional composition was similar between hard substrate adjacent and canyon axis habitats. Although diversity and abundance of hard substrate adjacent sediment communities did not change with depth, communities were driven by sediments with low organic matter content, whereas canyon and slope community assemblages were best explained by depth and higher organic content. Beta diversity among hard substrate adjacent sediments and canyon axis communities was high, with 27% of canyon taxa and 10% of regional taxa only occurring in hard substrate habitats. Given the thousands of submarine canyons worldwide, our results highlight the overall importance of substrate habitat heterogeneity within canyons in supporting deep-sea benthic diversity and suggest that both within-canyon and regional diversity are underestimated.

Norfolk Canyon↗

USGS2018

Individual species–area relationships in temperate coniferous forests

Questions What drives individual species–area relationships in temperate coniferous forests? Location Two 25.6‐ha forest plots on the Pacific Slope of North America, one in California, and one in Washington State. Methods We mapped all trees ≥1 cm in diameter and examined tree species diversity of their local neighbourhoods by calculating the individual species–area relationship for each species and for each of three diameter classes (saplings, mature trees and large‐diameter trees). Results In the California plot, small trees in four of the five major species occurred in neighbourhoods with higher levels of diversity than would be expected at random. In the Washington plot, small trees for four of five abundant species had neighbourhoods with lower than expected diversity at distances ≤5 m for small trees. However, at distances >5 m, all five species showed higher than expected diversity in their neighbourhoods. Larger trees at both plots tended to occur in neighbourhoods with lower than expected diversity, and no large‐diameter focal species had neighbourhoods with higher than expected diversity. Conclusion Diversity and co‐existence in temperate conifer‐dominated forests do not appear to be the result of random processes. Competitive interactions appear to dominate for the largest trees of most species, resulting in neighbourhoods with lower diversity. For smaller trees, we suggest that a positive response to environmental heterogeneity is the likely driver of neighbourhoods with higher than expected diversity, although we cannot rule out the possibility that facilitation or conspecific negative density dependence (CNDD) also play a role.

Journal of Vegetation Science↗

USGS2006

Genetic Considerations for the Restoration of Smooth Cordgrass (Spartina alterniflora) Within Its Native Range

In order to remain viable over many generations, plant populations require the ability to respond adaptively to a changing environment. Such adaptive potential is directly controlled by underlying genetic variation, which can be measured in terms of both heterozygosity at the individual level and clonal, or genotypic diversity at the population level. This report summarizes research relating to the importance of genetic diversity in the restoration of salt marsh smooth cordgrass, Spartina alterniflora, a dominant member of low elevation intertidal marshes throughout the northern Gulf of Mexico and Atlantic Coasts of North America. Recent research has indicated that S. alterniflora is a partially clonal species characterized by the recruitment of seedlings exclusively during the initial colonization phase of population establishment. A major consequence of this finding is that clonal diversity generally peaks rather early in the development of a restored marsh, depending on the rate of natural immigration and/or the clonal diversity of planting units, and then undergoes a steady decline over geological time spans because of stochastic mortality and intraspecific competition. Low levels of clonal diversity resulting from restricted immigration or clonally depauperate planting materials in turn places strict limits on opportunities for outcrossing in a species known to suffer from severe inbreeding depression. Low clonal diversity may further lead to declining levels of heterozyosity of individual clones, which directly affects competitive ability. In addition, the planting of genetically diverse plant materials should take into account the genetic and adaptive differentiation that takes place when plant populations are widely separated in space and/or dwell under varying sets of environmental conditions. Thus, steps should be taken to ensure that S. alterniflora clones developed for restorative plantings are both genetically diverse and sufficiently pre-adapted to environmental conditions at the proposed restoration site. This can be achieved by growing plant materials collected from local sources and by either taking care to maintain relatively high levels of clonal diversity or by planting clones at sufficiently low densities that they will not quickly grow to monopolize a restoration site without first producing several generations of sexual recruits through crosses with nearby native populations.

Open-File Report↗

USGS2017

Genomics of Arctic cod

The Arctic cod (Boreogadus saida) is an abundant marine fish that plays a vital role in the marine food web. To better understand the population genetic structure and the role of natural selection acting on the maternally-inherited mitochondrial genome (mitogenome), a molecule often associated with adaptations to temperature, we analyzed genetic data collected from 11 biparentally-inherited nuclear microsatellite DNA loci and nucleotide sequence data from from the mitochondrial DNA (mtDNA) cytochrome b (cytb) gene and, for a subset of individuals, the entire mitogenome. In addition, due to potential of species misidentification with morphologically similar Polar cod (Arctogadus glacialis), we used ddRAD-Seq data to determine the level of divergence between species and identify species-specific markers. Based on the findings presented here, Arctic cod across the Pacific Arctic (Bering, Chukchi, and Beaufort Seas) comprise a single panmictic population with high genetic diversity compared to other gadids. High genetic diversity was indicated across all 13 protein-coding genes in the mitogenome. In addition, we found moderate levels of genetic diversity in the nuclear microsatellite loci, with highest diversity found in the Chukchi Sea. Our analyses of markers from both marker classes (nuclear microsatellite fragment data and mtDNA cytb sequence data) failed to uncover a signal of microgeographic genetic structure within Arctic cod across the three regions, within the Alaskan Beaufort Sea, or between near-shore or offshore habitats. Further, data from a subset of mitogenomes revealed no genetic differentiation between Bering, Chukchi, and Beaufort seas populations for Arctic cod, Saffron cod (Eleginus gracilis), or Walleye pollock (Gadus chalcogrammus). However, we uncovered significant differences in the distribution of microsatellite alleles between the southern Chukchi and central and eastern Beaufort Sea samples of Arctic cod. Finally, using ddRAD-Seq data, we identified species-specific markers and in conjunction with mitogenome data, identified an Arctic cod x Polar cod hybrid in western Canadian Beaufort Sea. Overall, the lack of genetic structure among Arctic cod within the Bering, Chukchi and Beaufort seas of Alaska is concordant with the absence of geographic barriers to dispersal and typical among marine fishes. Arctic cod may exhibit a genetic pattern of isolation-by-distance, whereby populations in closer geographic proximity are more genetically similar than more distant populations. As this signal is only found between our two fartherest localities, data from populations elsewhere in the species’ global range are needed to determine if this is a general characteristic. Further, tests for selection suggested a limited role for natural selection acting on the mitochondrial genome of Arctic cod, but do not exclude the possibility of selection on genes involved in nuclear-mitogenome interactions. Unlike previous genetic assessment of Arctic cod sampled from the Chukchi Sea, the high levels of genetic diversity found in Arctic cod assayed in this study, across regions, suggests that the species in the Beaufort and Chukchi seas does not suffer from low levels of genetic variation, at least at neutral genetic markers. The large census size of Arctic cod may allow this species to retain high levels of genetic diversity. In addition, we discovered the presence of hybridization between Arctic and Polar cod (although low in frequency). Hybridization is expected to occur when environmental changes modify species distributions that result in contact between species that were previously separated. In such cases, hybridization may be an evolutionary mechanism that promotes an increase in genetic diversity that may provide species occupying changing environments with locally-adapted genotypes and, therefore, phenotypes. Natural selection can only act on the standing genetic variation present within a population. Therefore, given its higher levels of genetic diversity in combination with a large population size, Arctic cod may be resilient to current and future environmental change, as high genetic diversity is expected to increase opportunities for positive selection to act on genetic variants beneficial in different environments, regardless of the source of that genetic variation.

OCS Study↗

USGS2019

Applying concepts of general resilience to large river ecosystems: A case study from the Upper Mississippi and Illinois rivers

Large floodplain-river ecosystems are often highly modified to provide services that society desires, yet these modifications can limit an ecosystem’s ability to adapt to changing conditions. The adaptive capacity of an ecosystem, its general resilience, is a conceptual framework for considering how a system will respond to such changes. We sought to apply aspects of three general resilience principles (diversity and redundancy, connectivity, and controlling variables) to our understanding of floodplain-river ecosystem structure and function. We demonstrate the applicability of this approach in a case study of the Upper Mississippi River System (UMRS). In doing so, we developed ten indicators that highlight important structural and functional aspects of this floodplain-river ecosystem, and likely underlie the capacity of large rivers to cope with environmental change and disturbance. We developed diversity and redundancy indicators for aquatic habitats, patterns of floodplain inundation, and fish communities. Connectivity indicators included metrics of longitudinal and lateral connections. Controlling variable indicators included deviations from historic water surface elevation fluctuations, water clarity, nutrient concentrations, and aquatic invasive species. This set of indicators provides a simple description of the adaptive capacity of four distinct reaches of the UMRS: Upper Impounded, Lower Impounded, Unimpounded Reaches of the Upper Mississippi River and the entire Illinois River. High aquatic habitat diversity and redundancy, fish functional diversity and redundancy, and water clarity, and the scarcity of invasive fish species are all factors that likely contribute to the high general resilience of the Upper Impounded Reach. However, the limited longitudinal connectivity and establishment of a minimum water level for navigation are factors that may inhibit the general resilience of this reach. In the Lower Impounded Reach, there is high within-reach variability for individual indicators such as aquatic habitat diversity, fish functional diversity and redundancy, and longitudinal and lateral connectivity. In the Unimpounded Reach, a high degree of longitudinal connectivity likely enhances its general resilience, but low aquatic habitat diversity, low lateral connectivity, and relatively high number of invasive fish species inhibit general resilience. For the Illinois River Reach, the relatively high fish functional diversity and redundancy likely contributes to its general resilience, whereas high number of invasive fish species, low water clarity, low lateral connectivity, and high range of water levels may inhibit general resilience. Indicators derived from application of concepts of general resilience provide insight into the current coping capacity of the UMRS and identify opportunities for enhancing resilience.

Upper Mississippi River System↗

USGS2024

Opportunities for improved consideration of cultural benefits in environmental decision-making

Many cultural benefits of ecosystem services (ES) are difficult to capture in standard ES assessments. Scholars and practitioners often respond to this gap by seeking to develop new scientific methods to capture and integrate the plural values associated with diverse cultural benefits categories. This increasing emphasis on value pluralism represents an essential step toward recognitional justice within ES theory and practice. However, current approaches continue to rest on the assumption that ES-knowledge is only made available to decision-makers through scientific documentation. As a result, scholars and decision-makers fail to account for the role of knowledge pluralism as a core element of recognitional justice, and a key enabling factor for meaningful consideration of the plural values linked to cultural benefits of ES. In this paper, we contribute to a pluralist theory of cultural-benefits-knowledge, and ES-knowledge more broadly. Using a critical interpretive synthesis of environmental management literature, we conceptualize a wider range of knowledge forms that convey cultural benefits, based on the knowledge-as-practice concept in addition to the knowledge-as-product concept more familiar to Western actors. As part of the synthesis, we explore when and how diverse forms of cultural-benefits-knowledge intersect with decision-making processes, and the value aspects and categories of cultural benefits most frequently conveyed by each form of knowledge. Our synthesizing argument offers a critique of the concept of “ES-knowledge-use,” proposing a shift in focus toward “learning opportunities” that exist across phases of decision-making. We demonstrate that attention to a greater diversity of knowledge forms (knowledge pluralism), and a fuller spectrum of opportunities to integrate them (learning opportunities) can support more meaningful consideration of the plural values associated with cultural benefits of ES (value pluralism). In combination, attention to knowledge pluralism and value pluralism can help bring the ES approach into alignment with environmental justice through the recognition and legitimization of multiple identities, well-beings, and human-nature relationships, as reflected in meaningful consideration of the diverse cultural benefits of ES.

Ecosystem Services↗

USGS2001

Landscape determinants of nonindigenous fish invasions

Much has been written about the influence of exotic or nonindigenous species on natural habitats and communities of organisms, but little is known of the physical or biological conditions that lead to successful invasion of native habitats and communities by exotics. We studied invasivity factors in headwater streams of the Susquehanna River West Branch, which drains portions of the northern Appalachian Plateau. A replicated (two major tributaries) 3 × 3 factorial design was used to determine landscape effects of size (stream order) and quality (land use) on abiotic (physical and chemical) and biotic (fish community structure and function) stream attributes. Seven (21%) of thirty-four fish species (brown trout, common carp, mimic shiner, bluegill, smallmouth bass, fantail darter, and banded darter) collected in the eighteen streams sampled were nonindigenous to the basin. Watershed size (stream orders 1, 3, and 5) significantly affected stream geomorphologic and habitat variables (gradient, width, depth, current velocity, diel water temperature, bank overhang, canopy cover, and woody debris density) but not water-quality variables, while land use in watersheds (conservation, mining, and agriculture) significantly affected measured water-quality variables (alkalinity and concentrations of manganese, calcium, chloride, nitrate, and total dissolved solids) but not stream physical or habitat quality. Both watershed size and land use affected fish-community variables such as presence of particular species, species density, species diversity, tolerance diversity, and mean fish size, but in both cases the effect was transparent to native-origin status of fish species. No relationships were found between occurrence of nonindigenous species in watersheds and trophic structure or functional diversity. Therefore, the hypothesis that reduced species diversity increases vulnerability to nonindigenous species was not supported. However, the spatial variation associated with both water-quality and habitat-quality factors was greater in streams with mixed (those with nonindigenous species) than with exclusively native assemblages. These findings suggest that the mechanism for successful invasion by nonindigenous or exotic species is through change in water or habitat quality associated with human or natural disturbances, such as agriculture and mining activities in watersheds. Biotic factors appear to play no or a lesser role in the invasibility of northern Appalachian lotic systems.

Biological Invasions↗

USGS2003

Species area relationships in mediterranean-climate plant communities

Aim To determine the best-fit model of species–area relationships for Mediterranean-type plant communities and evaluate how community structure affects these species–area models. Location Data were collected from California shrublands and woodlands and compared with literature reports for other Mediterranean-climate regions. Methods The number of species was recorded from 1, 100 and 1000 m 2 nested plots. Best fit to the power model or exponential model was determined by comparing adjusted r 2 values from the least squares regression, pattern of residuals, homoscedasticity across scales, and semi-log slopes at 1–100 m 2 and 100–1000 m 2 . Dominance–diversity curves were tested for fit to the lognormal model, MacArthur's broken stick model, and the geometric and harmonic series. Results Early successional Western Australia and California shrublands represented the extremes and provide an interesting contrast as the exponential model was the best fit for the former, and the power model for the latter, despite similar total species richness. We hypothesize that structural differences in these communities account for the different species–area curves and are tied to patterns of dominance, equitability and life form distribution. Dominance–diversity relationships for Western Australian heathlands exhibited a close fit to MacArthur's broken stick model, indicating more equitable distribution of species. In contrast, Californian shrublands, both postfire and mature stands, were best fit by the geometric model indicating strong dominance and many minor subordinate species. These regions differ in life form distribution, with annuals being a major component of diversity in early successional Californian shrublands although they are largely lacking in mature stands. Both young and old Australian heathlands are dominated by perennials, and annuals are largely absent. Inherent in all of these ecosystems is cyclical disequilibrium caused by periodic fires. The potential for community reassembly is greater in Californian shrublands where only a quarter of the flora resprout, whereas three quarters resprout in Australian heathlands. Other Californian vegetation types sampled include coniferous forests, oak savannas and desert scrub, and demonstrate that different community structures may lead to a similar species–area relationship. Dominance–diversity relationships for coniferous forests closely follow a geometric model whereas associated oak savannas show a close fit to the lognormal model. However, for both communities, species–area curves fit a power model. The primary driver appears to be the presence of annuals. Desert scrub communities illustrate dramatic changes in both species diversity and dominance–diversity relationships in high and low rainfall years, because of the disappearance of annuals in drought years. Main conclusions Species–area curves for immature shrublands in California and the majority of Mediterranean plant communities fit a power function model. Exceptions that fit the exponential model are not because of sampling error or scaling effects, rather structural differences in these communities provide plausible explanations. The exponential species–area model may arise in more than one way. In the highly diverse Australian heathlands it results from a rapid increase in species richness at small scales. In mature California shrublands it results from very depauperate richness at the community scale. In both instances the exponential model is tied to a preponderance of perennials and paucity of annuals. For communities fit by a power model, coefficients z and log c exhibit a number of significant correlations with other diversity parameters, suggesting that they have some predictive value in ecological communities.

Journal of Biogeography↗

USGS2023

Genetic erosion in an endangered desert fish during a multidecadal megadrought despite long-term supportive breeding

Human water use combined with a recent megadrought have reduced river and stream flow through the Southwestern United States and led to periodic drying of formerly perennial river segments. Reductions in snowmelt runoff and increased extent of drying collectively threaten short-lived, obligate aquatic species, including the endangered Rio Grande silvery minnow. This species experiences ‘boom-and-bust’ population dynamics where large fluctuations in abundance are expected to lower estimates of effective population size and erode genetic diversity over time. Rates of diversity loss are also affected by additions of hatchery-origin fish used to supplement the wild population. We leveraged demographic and genetic data from wild and hatchery individuals to understand the relationship of genetic diversity and effective population size to abundance over the last two decades. Genetic diversity was low during the early 2000s, but diversity and demographic metrics stabilized after the hatchery program was initiated and environmental conditions improved. Yet, from 2017 onward, allelic diversity declined (Cohen's d = 1.34) and remains low despite hatchery stocking and brief wild population recovery. Across the time series, single-sample estimates of effective population size (N eD ) were positively associated ( r = 0.53) with wild/total abundance, but as the proportion of hatchery-origin spawners increased, N eD was reduced ( r = -0.55). Megadrought limits wild spawner abundance and precludes refreshment of hatchery brood stocks with wild fish, hence we predict a riverine population increasingly dominated by hatchery-origin individuals and accelerated loss of genetic diversity despite supplementation. We recommend an adaptive and accelerated management plan that integrates river flow management and hatchery operations to slow the pace of genetic diversity loss exacerbated by megadrought.

New Mexico↗

USGS2021

Riverine complexity and life history inform restoration in riparian environments in the southwestern U.S.

Riparian habitat in the southwestern USA has undergone substantial degradation over the past century, prompting extensive management and restoration of these critical ecosystems. Most restoration efforts, however, do not account for life history traits or riverine complexity that may influence genetic diversity and structure. Here, we use simple sequence repeat (SSR) markers in four southwestern riparian species ( Populus fremontii, Salix gooddingii, S. exigua, and Prosopis glandulosa ) that occupy a geographically complex region to address four questions: 1) How is river connectivity related to genetic diversity and structure? 2) How do mating systems and dispersal mechanisms influence gene flow? 3) Is genetic diversity influenced by unidirectional water flow? 4) How do unregulated tributary and regulated river flows affect clonality and associated diversity? Our results identify five findings: 1) Patterns of genetic diversity and structure vary substantially across different species; 2) species with geographic distributions that include a large, perennial river exhibit the least genetic structure; 3) mating system, clonality, and seed dispersal are related to genetic structure; 4) genetic diversity is variable among species and populations, but does not increase or decrease unidirectionally; and 5) clonality and associated diversity does not differ along a regulated river relative to unregulated tributaries. Our multispecies approach to understanding how riverine complexity and life history traits influence genetic diversity and structure could be incorporated into management efforts to more closely match riparian species with their unique environments, thereby facilitating restoration success.

Arizona↗

USGS2013

Determination of flow losses in the Cape Fear River between B. Everett Jordan Lake and Lillington, North Carolina, 2008-2010

During 2008-2010, the U.S. Geological Survey conducted a hydrologic investigation in cooperation with the Triangle J Council of Governments Cape Fear River Flow Study Committee and the North Carolina Division of Water Resources to collect hydrologic data in the Cape Fear River between B. Everett Jordan Lake and Lillington in central North Carolina to help determine if suspected flow losses occur in the reach. Flow loss analyses were completed by summing the daily flow releases at Jordan Lake Dam with the daily discharges at Deep River at Moncure and Buckhorn Creek near Corinth, then subtracting these values from the daily discharges at Cape Fear River at Lillington. Examination of long-term records revealed that during 10,227 days of the 1983-2010 water years, 408 days (4.0 percent) had flow loss when conditions were relatively steady with respect to the previous day's records. The flow loss that occurred on these 40 days ranged from 0.49 to 2,150 cubic feet per second with a median flow loss of 37.2 cubic feet per second. The months with the highest number of days with flow losses were June (16. percent), September (16.9 percent), and October (19.4 percent). A series of synoptic discharge measurements made on six separate days in 2009 provided "snapshots" of overall flow conditions along the study reach. The largest water diversion is just downstream from the confluence of the Haw and Deep Rivers, and discharges substantially decrease in the main stem downstream from the intake point. Downstream from Buckhorn Dam, minimal gain or loss between the dam and Raven Rock State Park was noted. Analyses of discharge measurements and ratings for two streamgages-one at Deep River at Moncure and the other at Cape Fear River at Lillington-were completed to address the accuracy of the relation between stage and discharge at these sites. The ratings analyses did not indicate a particular time during the 1982-2011 water years in which a consistent bias occurred in the computations of discharge records that would indicate false flow losses. A total of 34 measured discharges at a streamgage on the Haw River below B. Everett Jordan Lake near Moncure were compared with the reported hourly flow releases from Jordan Lake Dam. Because 28 of 34 measurements were within plus or minus 10 percent of the hourly flow releases reported by the U.S Army Corps of Engineers, use of the current discharge computation tables for reporting Jordan Lake Dam flow releases is generally supported. A stage gage was operated on the Cape Fear River at Buckhorn Dam near Corinth to collect continuous stage-only records. Throughout the study period, flow over the dam was observed along its length, and flow loss within the study reach is not attributed to river-level fluctuations at the dam. Water-use information and (or) data were obtained for five industrial facilities, a regional power utility, two municipalities, one small hydropower facility on the Deep River, and one quarry operation also adjacent to the Deep River. The largest water users are the regional power producer, a small hydropower operation, and the two municipalities. The total water-use diversions for these facilities range from almost 25.5 to 38.5 cubic feet per second (39.5 to 59.5 million gallons per day) during the winter and summer periods, respectively. This range is equivalent to 69 to 104 percent of the 37 cubic feet per second median flow loss. The Lockville hydropower station is on the Deep River about 1 mile downstream from the streamgage near Moncure. Run-of-river operations at the facility do not appear to affect flow losses in the study reach. The largest water user in the study area is a regional power producer at a coal-fired power-generation plant located immediately adjacent to the Cape Fear River just downstream from the confluence of the Haw an Deep Rivers. Comparisons of daily water withdrawals, sup-plied by the regional power producer, and discharge records at a streamgage on the diversion canal indicated many days when consumption exceeded the producer's estimates for the cooling towers. Uncertainty surrounding reasonable estimates of consumption remained in effect at the end of the study. Data concerning evaporative losses were compiled using two approaches-an analysis of available pan-evaporation data from a National Weather Service cooperative observer station in Chapel Hill, North Carolina; and a compilation of reference open-water evaporation computed by the State Climate Office of North Carolina. The potential flow loss by evaporation from the main stem and the Deep River was estimated to be in the range of 4 to 14 cubic feet per second during May through October, equivalent to 10 to 38 percent of the 37 cubic feet per second median flow loss. Daily water-use diversions and evaporation losses were compared to flow-loss occurrences during the period April 2008 through September 2010. In comparing the surface-water, water-use, and evaporation data compiled for 2008-2010, it is evident that documented water diversions combined with flow losses by open-water evaporation can exceed the net flow gain in the study area and result in flow losses from the reach. Analysis of data from a streamgage downstream from the regional power plant on the diversion canal adjacent to the Cape Fear River provided insight into the occurrence of an apparent flow loss at the streamgage at Lillington. Assessment of the daily discharges and subsequent hydrographs for the canal streamgage indicated at least 24 instances during the study when the flows suddenly changed by magnitudes of 100 to more that 200 cubic feet per second, resulting in a noted time-lag effect on the downstream discharges at the Lillington streamgage, beginning 8 to 16 hours after the sudden flow change. A fiber-optic distributed temperature-sensing survey was conducted on the Cape Fear River at the Raven Rock State Park reach August 12-14, 2009, to determine if the presence of diabase dikes were preferentially directing groundwater discharge. No temperature anomalies of colder water were measured during the survey, which indicated that at the time of the survey that particular reach of the Cape Fear River was a "no-flow" or losing stream. An aerial thermal-infrared survey was conducted on the Haw and Cape Fear Rivers on February 27, 2010, from Jordan Lake Dam to Lillington to qualitatively delineate areas of groundwater discharge on the basis of the contrast between warm groundwater discharge and cold surface-water temperatures. Dis-charge generally was noted as diffuse seepage, but in a few cases springs were detected as inflow at a discrete point of discharge. Two reaches of the Cape Fear River (regional power plant and Bradley Road reaches) were selected for groundwater monitoring with a transect of piezometers installed within the flood plain. Groundwater-level altitudes at these reaches were analyzed for 1 water year (October 1, 2009, to September 30, 2010). Data collected as part of this study represent only a brief period of time and may not represent all conditions and all years; however, the data indicate that, during the dry summer months, the Cape Fear River within the study area is losing an undetermined quantity of water through seepage. Analyses completed during this investigation indicate a study reach with complex flow patterns affected by numerous concurrent factors resulting in flow losses. The causes of flow loss could not be solely attributed to any one factor. Among the factors considered, the occurrences of water diversions and evaporative losses were determined to be sufficient on some days (particularly during the base-flow period) to exceed the net gain in flows between the upstream and downstream ends of the study area. Losses by diversions and evaporation can exceed the median flow loss of 3 cubic feet per second, which indicates that flow loss from the study reach is real. Groundwater data collected during 2009-2010 indicate the possibility of localized flow loss during the summer, particularly in the impounded reach above Buckhorn Dam. However, no indication of unusual patterns was noted that would cause substantial flow loss by groundwater and surface-water interaction at the river bottom.

North Carolina↗

USGS1980

Hydrologic analysis of the proposed Badger-Beaver Creeks artificial-recharge project: Morgan County, Colorado

A hydrologic analysis of the proposed Badger-Beaver Creeks artificial-recharge project in Morgan County, Colo., was made with the aid of three digital computer models: A canal-distribution model, a ground-water flow model, and a stream-aquifer model. Statistical summaries of probable diversions from the South Platte River based on a 27-year period of historical flows indicate that an average-annual diversion of 96,000 acre-feet and a median-annual diversion of 43,000 acre-feet would be available. Diversions would sustain water in ponds for waterfowl habitat for an average of about five months per year, with a miximum pond surface area of about 300 acres with the median diversions and a maximum pond surface area of about 1,250 acres at least one-half of the years with the historic diversions. If the annual diversion were 43,000 acre-feet, recharge to the two alluvial aquifers would raise water levels sufficiently to create flowing streams in the channels of Beaver and Badger Creeks while allowing an increase in current ground-water pumping. The only area of significant waterlogging would be along the proposed delivery canal on the west edge of Badger Creek valley. If the total water available were diverted, the aquifer system could not transmit the water fast enough to the irrigation areas to avoid considerable waterlogging in the recharge areas. The impact of the proposed project on the South Platte River basin would be minimal once the ground-water system attained steady-state conditions, but that may take decades with a uniform diversion of the 43,000 acre-feet annually.

Colorado↗

USGS2024

Homogenization of soil seed bank communities by fire and invasive species in the Mojave Desert

Soil seed banks help maintain species diversity through temporal storage effects and function as germination pools that can optimize fitness across varying environmental conditions. These characteristics promote the persistence of native plant communities, yet disturbances such as fire and associated invasions by non-native species can disrupt these reserves, fundamentally altering successional trajectories. This may be particularly true in deserts, where native plant communities are less adapted to fire. While studies of fire effects on desert plant communities are not uncommon, information regarding the short- and long-term effects of fire on seed banks is less available. To better understand the influence of fire and invasive species on desert seed banks, we investigated soil seed bank biodiversity from 30 wildfires that burned between 1972 and 2010 across the Mojave Desert ecoregion of North America. We assessed how characteristics of fire regimes (frequency, time since fire, and burn severity) interacted with climate and invasive plants on measures of α-, β-, and γ-diversities. Because β-diversity is a direct measure of community variability and reveals important information about biodiversity loss, we further examined the nestedness and turnover components of β-diversity. Mean α- and γ-diversities were generally higher for burned locations than in unburned reference sites, however individual fire variables had little influence on patterns of seed bank diversity. Burned area seed banks tended to be dominated by non-native invasive species, primarily two grasses, ( Bromus rubens , Bromus tectorum ), as well as an invasive forb ( Erodium cicutarium ). The most striking pattern we observed was a collective sharp decline in α-, β-, and γ-diversities with increased invasive species dominance, indicating the homogenization of seed bank communities with the colonization of invasive species after fire. Evidence of homogenization was further supported by reduced turnover and increased nestedness in burn areas compared to reference areas indicating potential biodiversity loss. Our findings highlight how biological processes such as plant invasions can combine with disturbance from fire to alter patterns of seed bank composition and diversity in desert ecosystems.

Frontiers in Ecology and Evolution↗

USGS2023

A genetic warning system for a hierarchically structured wildlife monitoring framework

Genetic variation is a well-known indicator of population fitness yet is not typically included in monitoring programs for sensitive species. Additionally, most programs monitor populations at one scale, which can lead to potential mismatches with ecological processes critical to species' conservation. Recently developed methods generating hierarchically nested population units (i.e., clusters of varying scales) for greater sage-grouse ( Centrocercus urophasianus ) have identified population trend declines across spatiotemporal scales to help managers target areas for conservation. The same clusters used as a proxy for spatial scale can alert managers to local units (i.e., neighborhood-scale) with low genetic diversity, further facilitating identification of management targets. We developed a genetic warning system utilizing previously developed hierarchical population units to identify management-relevant areas with low genetic diversity within the greater sage-grouse range. Within this warning system we characterized conservation concern thresholds based on values of genetic diversity and developed a statistical model for microsatellite data to robustly estimate these values for hierarchically nested populations. We found that 41 of 224 neighborhood-scale clusters had low genetic diversity, 23 of which were coupled with documented local population trend decline. We also found evidence of cross-scale low genetic diversity in the small and isolated Washington population, unlikely to be reversed through typical local management actions alone. The combination of low genetic diversity and a declining population suggests relatively high conservation concern. Our findings could further facilitate conservation action prioritization in combination with population trend assessments and (or) local information, and act as a base-line of genetic diversity for future comparison. Importantly, the approach we used is broadly applicable across taxa.

Ecological Applications↗