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USGS2004

Endangered fish threatened by Asian fish tapeworm

The Asian fish tapeworm, an exotic parasite, has invaded the endangered humpback chub ( Gila cypha ) population from the Colorado and Little Colorado Rivers in Grand Canyon, Arizona. This parasite causes disease and death in carp in aquaculture settings and may retard growth in hatchery-reared roundtail chub ( Gila robusta) . Other consequences include destruction and dysfunction of the intestinal lining and adverse changes to certain blood parameters. Introduced into the U.S. in the 1970s with imported grass carp ( Ctenopharyngodon idella ), the Asian fish tapeworm ( Bothriocephalus acheilognathi ) was discovered in the Little Colorado River (LCR) by 1990. The LCR is the main tributary to the Colorado River in Grand Canyon and is an important spawning area for humpback chub.

Fact Sheet↗

USGS2005

Ecology and diagnosis of introduced avian malaria in Hawaiian forest birds

Avian malaria is a disease caused by species of protozoan parasites (Plasmodium) that infect birds. Related species commonly infect reptiles, birds and mammals in tropical and temperate regions of the world. Transmitted by mosquitoes, the parasites spend part of their lives in the red blood cells of birds (Figure 1). Avian malaria is common in continental areas, but is absent from the most isolated island archipelagos where mosquitoes do not naturally occur. More than 40 different species of avian Plasmodium have been described, but only one, P. relictum, has been introduced to the Hawaiian Islands. Because they evolved without natural exposure to avian malaria, native Hawaiian honeycreepers are extremely susceptible to this disease. Malaria currently limits the geographic distribution of native species, has population level impacts on survivorship, and is limiting the recovery of threatened and endangered species of forest birds.

Fact Sheet↗

USGS2010

Occurrence of Escherichia coli in the Cuyahoga River in the Cuyahoga Valley National Park, Ohio

There are several measures of the 'cleanliness' of a natural body of water, including concentrations of indicator bacteria, anthropogenic chemicals (chemicals derived from human activities), and nutrients, such as nitrogen and phosphorous. Escherichia coli (E. coli) is a bacterium that lives in the intestinal tract of warm-blooded animals, such as humans, deer, cows, and dogs. Most strains of E. coli are not harmful and are in fact beneficial to humans by aiding in the digestive process. A few strains, such as the O157 strain, produce toxins that can cause gastrointestinal illness, but occurrence of toxic strains in the environment is not common. E. coli is considered a good indicator bacterium because its occurrence in the environment indicates the presence of fecal contamination and therefore the possible presence of pathogenic organisms associated with feces. The U.S. Environmental Protection Agency (USEPA) recommends using measurements of E. coli to monitor freshwaters and set criteria for the concentration of bacteria that can be present in the water with minimal adverse human-health effects. Typically, a State's waters are assigned a recreational-use designation, such as bathing, primary-contact, or secondary contact waters, which is used to set the State's water-quality standards based on the USEPA criteria. The Cuyahoga River in the Cuyahoga Valley National Park is designated for primary-contact recreation; therefore, when concentrations of E. coli exceed 298 CFU/100mL, the river would be considered potentially unsafe for recreation.

Fact Sheet↗

USGS2006

A Reconnaissance for Emerging Contaminants in the South Branch Potomac River, Cacapon River, and Williams River Basins, West Virginia, April-October 2004

In 2003 a team of scientists from West Virginia Division of Natural Resources and the U. S. Geological Survey found a high incidence of an intersex condition, oocytes in the testes, among smallmouth bass (Micropterus dolomieu) in the South Branch Potomac River and the Cacapon River of West Virginia, indicating the possible presence of endocrine-disrupting compounds (EDCs). Possible sources of EDCs include municipal and domestic wastewater, and agricultural and industrial activities. Several sampling strategies were used to identify emerging contaminants, including potential EDCs, and their possible sources in these river basins and at an out-of-basin reference site. Passive water-sampling devices, which accumulate in-stream organic chemical compounds, were deployed for 40-41 days at 8 sampling sites. Sampler extracts were analyzed for a broad range of polar and non-polar organic compounds including pesticides, flame retardants, pharmaceuticals, and personal-care products. Analysis of passive-sampler extracts found 4 compounds; hexachloro-benzene; pentachloroanisole; 2,2',4,4',5-penta-bromo-diphenyl ether (BDE 47); and 2,2',4,4',6-penta-bromo-diphenyl ether (BDE 99) to be present at every sampled site, including the reference site, and several sites had detectable quantities of other compounds. No detectable quantity of any antibiotics was found in any passive-sampler extract. Effluent samples were analyzed for 39 antibiotics as tracers of human and agricultural waste. Additionally, poultry-processing plant effluent was sampled for roxarsone, an organoarsenic compound used as a poultry-feed additive, and other arsenic species as tracers of poultry waste. Antibiotics were detected in municipal wastewater, aquaculture, and poultry-processing effluent, with the highest number of antibiotics and the greatest concentrations found in municipal effluent. Arsenate was the only arsenic species detected in the poultry-processing plant effluent, at a concentration of 1.0 ?g/L. Water samples were collected from 7 stream sites and analyzed for arsenic species, including roxarsone. Arsenate was detected in samples from 6 of the 7 stream samples, in concentrations ranging from 0.3 to 0.5 ?g/L. Additionally, the analysis of smallmouth bass blood plasma for potential EDCs indicated the presence of several compounds including some found in the passive sampler extracts, specifically BDE 47 and BDE 99. Data from this reconnaissance will help to focus efforts for further studies of the occurrence of emerging contaminants, EDCs, and intersex in smallmouth bass in these Potomac River tributaries.

Open-File Report↗

USGS2009

Assessment of contaminant exposure and effects on ospreys nesting along the Lower Duwamish River, Washington, 2006-07

We evaluated the effects of contaminants on osprey (Pandion haliaetus) nesting along the lower Duwamish River (LDR), Washington, and used the upper reach of the Willamette River (WR), Oregon, as a reference site. Osprey eggs and nestling blood (plasma) were collected at nests along the LDR (11 eggs, 7 plasmas) and WR (10 eggs, 6 plasmas) in 2006-07 and analyzed for contaminants. Additionally, hematology and serum chemistries were determined in the blood/plasma samples of nestlings (about 35-45 days old) and were used as potential indicators of stress induced by contaminant exposure. Detailed foraging information for ospreys nesting along the LDR was collected and evaluated to better understand contaminant profiles observed in the eggs and plasma. Additional residue data from 26 osprey eggs collected and analyzed in 2002-03 from nests along the LDR, Snohomish River Estuary (SRE) and Lake Washington (LW) in the Puget Sound (PS) region also were evaluated.

Washington↗

USGS2011

Evaluation of the genetic distinctiveness of Greater Sage-grouse in the Bi-State Planning Area

The purpose of this study was to further characterize a distinct population of Greater Sage-grouse: the population located along the border between Nevada and California (Bi-State Planning Area) and centered around the Mono Basin. This population was previously determined to be genetically distinct from other Greater Sage-grouse populations across their range. Previous genetic work focused on characterizing genetic variation across the species' range and thereby used a coarse sampling approach for species characterization. The goal of this study was to investigate this population further by obtaining samples from breeding locations within the population and analyzing those samples with the same mitochondrial and microsatellite loci used in previous studies. Blood samples were collected in six locations within the Bi-State Planning Area. Genetic data from subpopulations were then compared with each other and also with two populations outside of the Bi-State Planning Area. Particular attention was paid to subpopulation boundaries and internal dynamics by drawing comparisons among particular regions within the Bi-State Planning Area and regions proximal to it. All newly sampled subpopulations contained mitochondrial haplotypes and allele frequencies that were consistent with the genetically unique Bi-State (Mono Basin) Greater Sage-grouse described previously. This reinforces the fact that this group of Greater Sage-grouse is genetically unique and warrants special attention. Maintaining the genetic integrity of this population could protect the evolutionary potential of this population of Greater Sage-grouse. Additionally, the White Mountains subpopulation was found to be significantly distinct from all other Bi-State subpopulations.

Open-File Report↗

USGS2014

Monitoring of wild fish health at selected sites in the Great Lakes Basin: methods and preliminary results

During fall 2010 and spring 2011, a total of 119 brown bullhead ( Ameiurus nebulosus ), 136 white sucker ( Catostomus commersoni ), 73 smallmouth bass ( Micropterus dolomieu ), and 59 largemouth bass ( M. salmoides ) were collected from seven Great Lakes Basin Areas of Concern and one Reference Site. Comprehensive fish health assessments were conducted in order to document potential adverse affects from exposure to complex chemical mixtures. Fish were necropsied on site, blood samples obtained, pieces of liver, spleen, kidney, gill and any abnormalities placed in fixative for histopathology. Liver samples were saved for gene expression analysis and otoliths were removed for aging. A suite of fish health indicators was developed and implemented for site comparisons and to document seasonal effects and species differences in response to environmental conditions. Organism level (grossly visible lesions, condition factor), tissue level (microscopic pathology, organosomatic indices, micronuclei, and other nuclear abnormalities), plasma factors (reproductive steroid hormones, vitellogenin), and molecular (gene expression) indicators were included. This report describes the methods and preliminary results.

Great Lakes Basin↗

USGS2014

Distribution and extent of heavy metal accumulation in Song Sparrows ( Melospiza melodia ), upper Santa Cruz River watershed, southern Arizona, 2011-12

Riparian ecosystems in arid environments provide critical habitat for breeding, migratory, and wintering birds, yet are often at risk of contamination by heavy metals. Birds and other animals living in contaminated areas are susceptible to adverse health effects as a result of long-term exposure and bioaccumulation of heavy metals. We investigated the distribution and cascading extent of heavy metal accumulation in Song Sparrows ( Melospiza melodia ) in Arizona’s upper Santa Cruz River watershed. This study had three goals: (1) quantify the degree of heavy metal accumulation in sparrows and determine the distributional patterns among study sites, (2) compare concentrations of metals found in this study to those found in studies performed prior to the 2009 international wastewater treatment plant upgrade, and (3) assess sparrow condition among sites with differing potential sources of contamination exposure. We examined six study sites that reflected different potential sources of contamination. Hematocrit values, body mass residuals, and leukocyte counts were used to assess sparrow condition. Cadmium, copper, mercury, nickel, and selenium exceeded background concentrations at some sites, but generally were lower than or similar to concentrations found in earlier studies performed prior to the 2009 international wastewater treatment plant upgrade. Concentrations were higher in recaptured birds in 2012 than in 2011 for 7 metals in feathers and 14 metals in blood, suggesting possible bioaccumulation. We found no cascading effects as a result of heavy metal exposure, but did find that heavy metal concentrations were reduced following the 2009 international wastewater treatment plant upgrade.

Arizona↗

USGS2015

Estimating exposure of piscivorous birds and sport fish to mercury in California lakes using prey fish monitoring: a predictive tool for managers

Numerous water bodies in California are listed under the Clean Water Act as being impaired due to mercury (Hg) contamination. The Surface Water Ambient Monitoring Program (SWAMP), via the Bioaccumulation Oversight Group (BOG), has recently completed statewide surveys of contaminants in sport fish tissue from more than 250 lakes and rivers in California and throughout coastal waters. This effort focused on human health issues but did not include beneficial uses by wildlife. Many piscivorous birds such as grebes, terns, cormorants, and mergansers eat fish smaller than those that were sampled by BOG, and sport fish Hg concentrations are not always indicative of wildlife exposure to Hg; therefore, the BOG surveys could not address whether wildlife were at risk due to Hg-induced reproductive impairment in these lakes. We used western grebes ( Aechmophorus occidentalis ) and Clark’s grebes ( Aechmophorus clarkii ) as our index of wildlife exposure to Hg in California lakes. Grebes are widely distributed in lakes throughout California and, as piscivorous waterbirds, are near the top of the food chain in lakes. Additionally, grebes become flightless after they arrive at their summer locations. Thus, grebes are useful representatives for wildlife risk from local, lake-specific contaminant exposure. Grebes also breed at many lakes throughout California, making them susceptible to impaired reproduction due to local Hg contamination. We developed a tool for estimating wildlife and sport fish risk from Hg exposure based on Hg concentrations in prey fish. This quantitative tool can be used to predict Hg concentrations in grebe blood, grebe eggs, and sport fish, thus facilitating a feasible alternative for adequately estimating wildlife exposure when more comprehensive wildlife sampling is not possible. Specifically, we sampled grebes, prey fish, and sport fish simultaneously at 25 lakes throughout California during the spring and summer of 2012 and 2013 when breeding birds are particularly vulnerable to Hg-induced reproductive impairment. We selected lakes based on a combination of factors, including lakes from southern and northern California, of various sizes, shapes, and elevations, with a range of sport fish Hg exposure levels , where largemouth bass ( Micropterus salmoides ) was the primary sport fish, and with a history of use by grebes. Using these factors ensured that our results are representative of a broad range of lakes and reservoirs in California and are comparable to prior BOG studies. Specifically, we addressed three management questions: Does methylmercury pose significant risks to aquatic life in a representative sample of California lakes and reservoirs? Can a correlational approach be applied on a statewide basis to estimate risks to birds? What are appropriate water-quality monitoring requirements to address methylmercury exposure in wildlife?

California↗

USGS2016

Relation between Enterococcus concentrations and turbidity in fresh and saline recreational waters, coastal Horry County, South Carolina, 2003–04

Bacteria related to the intestinal tract of humans and other warm-blooded animals have been detected in fresh and saline surface waters used for recreational purposes in coastal areas of Horry County, South Carolina, since the early 2000s. Specifically, concentrations of the facultative anaerobic organism, Enterococcus , have been observed to exceed the single-sample regulatory limit of 104 colony forming units per 100 milliliters of water. Water bodies characterized by these concentrations are identified on the 303(d) list for impaired water in South Carolina; moreover, because current analytical methods used to monitor Enterococcus concentrations take up to 1 day for results to become available, water-quality advisories are not reflective of the actual health risk. To determine if Enterococcus concentrations in surface water could be assessed in a more rapid manner, an investigation was completed between 2003 and 2004 in the study area of coastal Horry County, South Carolina. The study was designed to assess the relation between Enterococcus concentrations and turbidity, which, unlike Enterococcus concentrations, can be measured continuously by using a multiparameter water-quality sensor and results reported in real time. In 2003, three water-quality data collection stations that included a multiparameter water-quality sensor that measured turbidity were located in three representative surface-water basins in coastal Horry County, South Carolina. All these locations had previous reports of high Enterococcus concentrations. At each station, the water-quality sensor was placed in the water column and continuously measured turbidity, pH, specific conductivity, dissolved oxygen, and temperature. Each water-quality data collection station also monitored instantaneous precipitation and wind speed and direction. Surface-water samples were collected at each station during events characterized by no precipitation and by some recorded precipitation using manual and automatic methods, and analyzed for Enterococcus concentrations. A comparison of Enterococcus concentrations in surface-water samples collected simultaneously using both methods indicated a positive relation, although the average percent relative difference between the methods was 46 percent. During a period of no precipitation in February 2004, no relation between turbidity and Enterococcus concentrations was observed for surface-water samples collected at the water-quality data collection station located in the channel that drains a freshwater swamp. In contrast, during periods of precipitation in March and August 2004 at this location, a positive relation was observed between turbidity and Enterococcus concentrations in surface-water samples; that is, water samples characterized by higher turbidity also contained higher Enterococcus concentrations. At the water-quality data collection station located in a channel that drains to the surf zone of the Atlantic Ocean, no relation was observed between turbidity and Enterococcus concentrations during periods of either no precipitation (July 2004) or precipitation (August 2004). At this location, the turbidity was inversely related to relative tide height, high turbidity was observed during low tide when freshwater flowed seaward, and low turbidity was observed during high tide when saline seawater flowed landward. The positive relation observed between turbidity and Enterococcus concentrations in surface water at the water-quality data collection station located in the channel that drains a freshwater swamp may be attributed to bacterial survival in the abundant channel bed sediments that characterized this more naturalized area. Surface-water bed sediments collected near each water-quality data collection station and the surf zone were incubated in static microcosms in the laboratory and analyzed for Enterococcus concentrations over time. Enterococcus concentrations continued to persist in bed sediments collected in the channel that drains the swamp even after almost 4 months of incubation. Conversely, enterococci were not observed to persist in bed sediments characterized by high specific conductance. Although it is currently (2016) unknown whether this persistence of enterococci demonstrates growth or viability, the data indicate that enterococci can exist in channel bed-sediment environments outside of a host for a long time. This observation confirms previous reports that challenge the use of Enterococcus concentrations as an indicator of the recent introduction of fecal-related material and the associated acute risk to other pathogens.

South Carolina↗

USGS2016

Jaguar taxonomy and genetic diversity for southern Arizona, United States, and Sonora, Mexico

Executive Summary The jaguar is the largest Neotropical felid and the only extant representative of the genus Panthera in the Americas. In recorded history, the jaguars range has extended from the Southern United States, throughout Mexico, to Central and South America, and they occupy a wide variety of habitats. A previous jaguar genetic study found high historical levels of gene flow among jaguar populations over broad areas but did not include any samples of jaguar from the States of Arizona, United States, or Sonora, Mexico. Arizona and Sonora have been part of the historical distribution of jaguars; however, poaching and habitat fragmentation have limited their distribution until they were declared extinct in the United States and endangered in Sonora. Therefore, a need was apparent to have this northernmost (Arizona/Sonora) jaguar population included in an overall jaguar molecular taxonomy and genetic diversity analyses. In this study, we used molecular genetic markers to examine diversity and taxonomy for jaguars in the Northwestern Jaguar Recovery Unit (NJRU; Sonora, Sinaloa, and Jalisco, Mexico; and southern Arizona and New Mexico, United States) relative to jaguars in other parts of the jaguar range (Central and South America). The objectives of this study were to: Collect opportunistic jaguar samples (hide, blood, hair, saliva, and scat), from historical and current individuals, that originated in NJRU areas of Arizona, New Mexico, and Sonora; Use these samples to assess molecular taxonomy of NJRU jaguars compared to data from a previous study of jaguars rangewide; and Develop suggestions for conservation of NJRU jaguars based on the results.

Arizona, Jalisco, New Mexico, Sonora, Sinaloa↗

USGS2018

An evaluation of the toxicity of potassium chloride, active compound in the molluscicide potash, on salmonid fish and their forage base

Potash, with the active ingredient potassium chloride (KCl) is a chemical that is currently being evaluated for potential use as a molluscicide to combat invasive zebra mussels and quagga mussels in Western United States waters. Although data available for other freshwater fishes indicate that recommended treatment levels of potash as a molluscicide are sublethal, this has not been demonstrated for all salmonid species. The objectives of this study were to perform toxicity testing to determine the lethality of potassium chloride against selected species of salmonid fish (brook trout and Chinook salmon) and selected invertebrate forage, and to identify any potential adverse physiological impacts of KCl to these salmonids in water at treatment levels used for mollusk eradication. Minimal mortality (n=1 fish) was observed during 96-hour toxicity testing at KCl concentrations of 0 to 800 milligrams per liter (mg/L), indicating that the lethal concentration (LC 50 ) values in these salmonid species were considerably higher than realistic molluscicide treatment concentrations. Sublethal effects were examined through evaluation of behavioral and morphological (histological) observation as well as specific blood chemistry parameters (electrolytes, osmolality, glucose, and cortisol). There was no strong evidence of significant physiological impairment among the two salmonid species due to KCl exposure. Whereas statistically significant differences in some parameters were observed in association with KCl treatments, it is unlikely that these differences indicate adverse biological impacts. Acute toxicity tests were conducted with invertebrate species at KCl exposure concentrations of 0–3,200 mg/L. Daphniid exposure trials resulted in differences in mortality among the test groups with higher mortality evident among the higher KCl exposure concentrations with a calculated LC 50 value of 196 mg/L KCl for a 48-hour exposure. Crayfish exposed to higher concentrations of KCl at or above 800 mg/L as specimens exhibited death or reversible paralysis. Chironomid larvae exposures were largely inconclusive because of cannibalistic behavior among the various test groups.

Open-File Report↗

USGS2020

Monitoring and real-time modeling of Escherichia coli bacteria for the Chattahoochee River, Chattahoochee River National Recreation Area, Georgia, 2000–2019

The Chattahoochee River National Recreation Area (CRNRA) is a National Park Service unit/park with 48 miles of urban waterway in the Atlanta metropolitan area. The Chattahoochee River within the CRNRA is a popular place for water-based recreation but is known to periodically experience elevated levels of fecal-coliform bacteria associated with warm-blooded animals that can result in a variety of pathogen-related human illnesses. In 2000, the National Park Service entered into a public-private partnership with the U.S. Geological Survey (USGS) and the Chattahoochee Riverkeeper, called the Chattahoochee River BacteriALERT program, to monitor Escherichia coli ( E. coli ), which is a fecal indicator bacteria and a proxy for human health risk from waterborne pathogens. The BacteriALERT network monitors E. coli densities at three stations on the Chattahoochee River within the CRNRA, at Norcross (USGS station 02335000), Powers Ferry (USGS station 02335880), and Atlanta (USGS station 02336000). E. coli densities determined from water samples were compared to the U.S. Environmental Protection Agency’s Beach Action Value (BAV) of 235 colony forming units per 100 milliliters to assess whether conditions were considered safe for freshwater, primary contact recreational use. Sample E. coli densities exceeded the BAV for 15.5 percent of the samples collected at Norcross (n = 1,969) and 30.3 percent of the samples at Atlanta (n = 1,938) for the study period October 23, 2000, to May 23, 2019, and 33.6 percent of the samples from Powers Ferry (n = 134) for the study period May 5, 2016, to May 23, 2019. Models to predict E. coli densities in near real-time were developed for the three BacteriALERT stations. Models were developed using forward-stepwise multiple linear regression with the Bayesian Information Criteria and were calibrated with samples collected between October 4, 2007, and May 23, 2019. Explanatory variables included season, turbidity, water temperature, streamflow, upstream tributary streamflows, and temporal trend. The most statistically significant explanatory variables in the models were turbidity, upstream tributary streamflows, and season. The Norcross model had an increasing trend in E. coli densities of 2.3 percent per year. A significant trend was not detected for the Atlanta station, while trends were not assessed for Powers Ferry models due to the short (3-year) calibration period. Model adjusted R 2 s ranged from 0.686 (Atlanta) to 0.795 (Norcross with time trend) indicating that the models explained a substantial portion of the variations in E. coli densities. Evaluation of model predictions and residuals indicated that models were well posed and exhibited little bias. The models performed well in accurately determining compliance and exceedance of the BAV with low misidentification rates ranging from 3.5 percent (Norcross) to 11.3 percent (Powers Ferry). Misidentification was most common for densities near the BAV, and misidentification rates in the study were low despite fairly low model precisions because E. coli densities were infrequently near the BAV. The precisions of the models developed herein were comparable to the more complex models developed by Lawrence (2012) that were never implemented in the BacteriALERT program due to their computational complexity. The predictive E. coli models developed herein will improve the ability to assess the health risks of water-based recreational activities in the CRNRA in near real-time.

Georgia↗

USGS2022

Yuma Ridgway’s rail selenium exposure and occupancy within managed and unmanaged emergent marshes at the Salton Sea

Yuma Ridgway’s rail ( Rallus obsoletus yumanensis , hereafter, rail) is an endangered species for which patches of emergent marsh within the Salton Sea watershed comprise a substantial part of habitat for the species’ disjointed range in the southwestern United States. These areas of emergent marsh include (1) marshes managed by federal (particularly the U.S. Fish and Wildlife Service’s Sonny Bono Salton Sea National Wildlife Refuge), state (California Department of Fish and Wildlife), and local (Imperial Irrigation District) resource agencies that are sustained by direct deliveries of Colorado River water and (2) unmanaged marshes sustained by agricultural drainage water. Management of rail habitat in this arid environment is complicated by increasingly limited availability of unimpaired freshwater owing to water management decisions associated with the Quantification Settlement Agreement and risks posed by potentially harmful concentrations of selenium found in agricultural drainage water that can readily bioaccumulate in aquatic food webs. To provide timely science for managers, herein we report summary statistics for managed and unmanaged emergent marshes sampled at the Salton Sea during the rail breeding season of 2016 pertaining to (1) selenium concentrations in food webs representing dietary pathways of selenium exposure and (2) patterns of rail occupancy and inter-marsh movements, estimated abundance, and regional population size of rail. For selenium-specific objectives, we sampled unfiltered surface water, midge larvae (Chironomidae), water boatmen (Corixidae), mosquitofish ( Gambusia spp.), and crayfish (Astacidae). Selenium samples were collected from 15 fixed sampling points, each in managed and unmanaged marshes, during late February, April, and June 2016, which corresponded to rail pre-nesting, nesting, and fledgling reproductive life-stages, respectively. Two areas within the two treatment types (managed versus unmanaged marsh) were of particular interest to help assess risks associated with changing sea dynamics and different water-management strategies: (1) a large unmanaged marsh (Morton Bay) unintentionally created in approximately 2008 when it became separated from the Salton Sea as water inflows began to drop and a berm formed from accumulated sediment and (2) a restored marsh (HZ9A) managed by the Sonny Bono Salton Sea National Wildlife Refuge, which is currently supplied with Colorado River water but may be sustained in the future by a blend of clean (that is, low selenium) Colorado River and agricultural drainage water with higher selenium from the Alamo River. Hence, baseline data for these marshes are important for future management decisions. We also report selenium concentrations in rail blood, head feathers, and breast feathers from rails captured as part of the movement study. Results indicated relatively higher risks from dietary selenium exposure for rails occupying unmanaged marshes compared to managed marshes and similar risks among unmanaged marshes. However, risks also were potentially elevated for rails occupying some managed marshes (that is, the Hazard Marshes), where relatively high proportions of Chironomidae and mosquitofish exceeded dietary thresholds for selenium effects on avian reproduction. For rail-specific objectives, we quantified occupancy and spatial distribution using call count data analyzed with imperfect detection models. Imperfect detection models allowed us to jointly estimate detection probability and abundance of detected rails in association with habitats. We then used estimates of detection probability and abundance at the habitat level to extrapolate rail population abundance for the Salton Sea region. Inter- and intra-marsh movements were described from over 5,000 locations obtained from 15 radio-marked rails. Resultant space use patterns indicated that, in general, selenium risk to individuals is not equally shared because of high levels of territoriality and very limited movement throughout the landscape. Moreover, the largest contiguous blocks of habitat are associated with unmanaged marshlands located on the former southeastern shoreline and outside traditional management areas and authorities. Thus, a substantial proportion of the rail population that is using unmanaged marsh on the southeastern shoreline may have disproportionate risk of elevated selenium exposure, yet how that risk translates to population-level effects remains unknown.

California↗

USGS2026

Annotated bibliography of scientific research on new world screwworm ( Cochliomyia hominivorax ) myiasis in wildlife

The New World screwworm ( Cochliomyia hominivorax ; NWS) is a parasitic blowfly that lays its eggs in open wounds of live, warm-blooded animals including livestock, wildlife, and potentially humans. The larvae consume living animal tissue, and if untreated, the infestation can lead to death. Although NWS was eradicated in the United States in 1966, it has been moving northward from its endemic range in South America during the past decade and could seriously threaten the health of U.S. wildlife populations, making detection, treatment, and surveillance of the disease far more difficult across this multi-sector disease system. As the likelihood of NWS reintroduction to the United States increases, veterinarians, wildlife managers, and conservation specialists need to be informed and prepared to respond. The existing knowledge about NWS interactions with wildlife hosts is lacking, especially regarding North American species where the NWS has been eradicated for more than 50 years. To address this knowledge gap, we compiled an annotated bibliography that consolidates key information from the existing literature on NWS infestation in wild animals.

Open-File Report↗

USGS2005

Occurrence of fecal-indicator bacteria and protocols for identification of fecal-contamination sources in selected reaches of the West Branch Brandywine Creek, Chester County, Pennsylvania

The presence of fecal-indicator bacteria indicates the potential presence of pathogens originating from the fecal matter of warm-blooded animals. These pathogens are responsible for numerous human diseases ranging from common diarrhea to meningitis and polio. The detection of fecal-indicator bacteria and interpretation of the resultant data are, therefore, of great importance to water-resource managers. Current (2005) techniques used to assess fecal contamination within the fluvial environment primarily assess samples collected from the water column, either as grab samples or as depth- and (or) width-integrated samples. However, current research indicates approximately 99 percent of all bacteria within nature exist as attached, or sessile, bacteria. Because of this condition, most current techniques for the detection of fecal contamination, which utilize bacteria, assess only about 1 percent of the total bacteria within the fluvial system and are, therefore, problematic. Evaluation of the environmental factors affecting the occurrence and distribution of bacteria within the fluvial system, as well as the evaluation and modification of alternative approaches that effectively quantify the larger population of sessile bacteria within fluvial sediments, will present water-resource managers with more effective tools to assess, prevent, and (or) eliminate sources of fecal contamination within pristine and impaired watersheds. Two stream reaches on the West Branch Brandywine Creek in the Coatesville, Pa., region were studied between September 2002 and August 2003. The effects of sediment particle size, climatic conditions, aquatic growth, environmental chemistry, impervious surfaces, sediment and soil filtration, and dams on observed bacteria concentrations were evaluated. Alternative approaches were assessed to better detect geographic sources of fecal contamination including the use of turbidity as a surrogate for bacteria, the modification and implementation of sandbag bacteria samplers, and the use of optical brighteners. For the purposes of this report, sources of bacteria were defined as geographic locations where elevated concentrations of bacteria are observed within, or expected to enter, the main branch of the West Branch Brandywine Creek. Biologic sources (for example, waterfowl) were noted where applicable; however, no specific study of biologic sources (such as bacterial source tracking) was conducted. Data indicated that specific bacterial populations within fluvial sediments could be related to specific particle-size ranges. This relation is likely the result of the reduced porosity and permeability associated with finer sediments and the ability of specific bacteria to tolerate particular environments. Escherichia coli (E. coli) showed a higher median concentration (2,160 colonies per gram of saturated sediment) in the 0.125 to 0.5-millimeter size range of natural sediments than in other ranges, and enterococcus bacteria showed a higher median concentration (61,830 colonies per gram of saturated sediment) in the 0.062 to 0.25-millimeter size range of natural sediments than in other ranges. There were insufficient data to assess the particle-size relation to fecal coliform bacteria and (or) fecal streptococcus bacteria. Climatic conditions were shown to affect bacteria concentrations in both the water column and fluvial sediments. Drought conditions in 2002 resulted in lower overall bacteria concentrations than the more typically wet year of 2003. E. coli concentrations in fluvial sediment along the Coatesville study reach in 2002 had a median concentration of 92 colonies per gram of saturated sediment; in 2003, the median concentration had risen to 4,752 colonies per gram of saturated sediment. Symbiotic relations between bacteria and aquatic growth were likely responsible for increased bacteria concentrations observed within an impoundment area on the Coatesville study reach. This reach showed evidence of elevated aquatic growth and sharp increases in E. coli concentrations from upstream to downstream through the impoundment area in both 2002 and 2003. In 2003, E. coli concentrations within the waters column increased from 940 colonies per 100 milliliters upstream to 6,000 colonies per 100 milliliters at the dam crest. Given that these bacteria likely resulted from natural bacterial regrowth, the use of E. coli as an indicator of fecal contamination was severely impaired. Variable environmental conditions along the West Branch Brandywine Creek made the common field-chemical parameters of specific conductance, temperature, pH, and dissolved oxygen ineffective and (or) impossible to use for the determination of inputs of fecal contamination. Extreme variations in chemical gradients commonly were related to the urban/industrial signature of the watershed. For example, during base-flow sampling in 2002, specific-conductance values exceeding 1,000 microsiemens per centimeter observed in effluent from a local steel mill. This effluent raised the specific conductance within the West Branch Brandywine from just above 200 microsiemens per centimeter upstream from the outfall to just below 500 microsiemens per centimeter downstream from the outfall. These chemical gradients also, likely, had an effect on the initial colonization of bacteria, the formation of biofilms, and the persistence of certain types of bacteria along the study reach. Data collected in 2003 indicated that nutrients increased during both base-flow and stormflow conditions along the Coatesville study reach. For example, during base-flow sampling in 2003, 20 pounds of phosphorus was shown to enter the West Branch Brandywine Creek along the Coatesville study reach. The largest contributors to this base-flow nutrient load were likely two wastewater-treatment facilities adjacent to the study reach. During stormflow sampling in 2003, 480 pounds of phosphorus was shown to enter the West Branch Brandywine Creek along the Coatesville study reach. Data, along with other research, indicated the largest contributor to this stormflow nutrient load was likely remobilized sediment originating from a large dam impoundment. These elevated nutrient concentrations were considered sufficient to promote accelerated aquatic growth along the reach. Data collected in 2003 showed that wastewater constituents entered the West Branch Brandywine Creek largely from urban storm-sewer systems. Samples from the primary storm sewer for the city of Coatesville had detections for 20 of 69 wastewater constituents. These constituents included both strong and weak indicators of fecal contamination and generally indicated the storm-sewer system along the Coatesville study reach was a likely source of fecal-indicator bacteria and fecal contamination under base-flow conditions. By comparison, 5 constituents were detected in samples from the upstream end of the reach, and 10 constituents were detected in samples from the downstream end of the reach. During stormflow, numbers of detections were similar along the entire length of the study reach-five in samples from the upstream end, eight in samples from the center of the reach, and seven in samples from the downstream end of the reach. These data indicate that point sources (such as culverts and pipes, septic systems, and wastewater-treatment facilities) are not likely the origin of bacteria contamination during stormflow. The bacteria concentrations observed during stormflow events probably result from remobilized sessile bacteria stored within fluvial sediments. In this case, these bacteria should not be considered indicators of current fecal contamination. Impervious surfaces were found to increase bacteria concentrations along the West Branch Brandywine Creek because contaminated runoff from impervious areas generally flows into, and is concentrated within, the confines of the local storm-sewer system. During 2002, storm-sewer outfalls draining impervious areas were associated with all major locations of elevated bacterial concentrations (greater than 1,200 colonies per gram of saturated sediment) in fluvial sediments. During 2003, wetter conditions and overall bacteria concentrations higher than in 2002 resulted in point sources of bacterial contamination becoming less pronounced; however, the storm-sewer system, draining adjacent impervious areas, was still observed to be the primary source of bacteria along the reach. Where stormwater and (or) other runoff from these areas was allowed to infiltrate and (or) flow through wetland and riparian buffers, bacteria concentrations were not observed to be elevated above background levels commonly observed throughout similar areas of the same reach. Two run-of-the-river dams along the Coatesville study reach were evaluated for their effects on observed bacterial concentrations. These dams were shown to have greater or lesser effects on bacterial concentrations depending on the size of the structure and the capacity of the structure to impede flows. The smaller upstream dam had an approximate height of 3 feet and showed little observed effect on measured turbidity values; these data indicated that the dam did not effectively impede the flow of water or sediment within the West Branch Brandywine Creek. Consequently, this small dam did not show any observed effect on bacterial concentrations either upstream or downstream of the structure. The larger dam, near the middle of the reach, had an approximate height of 20 feet and showed greater effects on both turbidity and bacteria concentrations. The capacity of the larger dam to impede flows, combined with nutrients entering the reach, resulted in increased biologic activity throughout the impoundment area. Within this larger impoundment, enterococcus bacteria populations were observed to decrease sharply and E. coli bacteria populations were observed to increase sharply as flow approached the dam crest. All bacteria levels were then observed to drop to background levels, in both the water column and fluvial sediment, immediately downstream from the dam crest. Additional study is required to determine the cause for this rapid die off. Turbidity was assessed as a potential surrogate for E. coli bacteria. Regression analysis indicated higher turbidity levels usually can indicate higher concentrations of bacteria (R2 = 0.67), but the relation was too sporadic on the West Branch Brandywine Creek to use turbidity as a surrogate for estimated bacteria concentrations. Evaluation of data from individual base-flow and stormflow events resulted in variable and generally poor statistical relations between E. coli bacteria and turbidity (R2 values ranged from 0.02 to 0.94). Sandbag samplers were used in 2003 to determine their suitability for the assessment of fecal contamination. Sandbag samplers rely on the ability of bacteria to attach to surfaces and use the larger sessile bacteria populations instead of the more commonly used planktonic bacteria populations. E. coli bacteria concentrations observed in the sandbag samplers, after 1 week in place, were similar to those found within natural sediments collected concurrently. Enterococcus bacteria concentrations within the same sandbag samplers were not similar, and were generally lower, than those observed within the natural sediments. This discrepancy was likely because sand within the samplers was sieved to a size that was likely too coarse for enterococcus bacteria to persist. Optical-brightener samplers were installed along with each sandbag sampler. Optical brighteners are additives used in common household detergents; therefore, detection of optical brighteners, along with elevated fecal-indicator bacteria concentrations, strongly indicates a link to humans. Positive results for optical brighteners were detected only at the outfalls of two sewage-treatment facilities; because of treatment of the effluent from these facilities, these samples did not have elevated bacteria concentrations. The lack of additional positive results was largely because this method is not sensitive to low concentrations of optical brighteners.

Pennsylvania↗

USGS2008

Water-quality effects and characterization of indicators of onsite wastewater disposal systems in the east-central Black Hills area, South Dakota, 2006-08

Onsite wastewater disposal systems (OWDS) are used extensively in the Black Hills of South Dakota where many of the watersheds and aquifers are characterized by fractured or solution-enhanced bedrock with thin soil cover. A study was conducted during 2006-08 to characterize water-quality effects and indicators of OWDS. Water samples were collected and analyzed for potential indicators of OWDS, including chloride, bromide, boron, nitrite plus nitrate (NO2+NO3), ammonia, major ions, nutrients, selected trace elements, isotopes of nitrate, microbiological indicators, and organic wastewater compounds (OWCs). The microbiological indicators were fecal coliforms, Escherichia coli (E. coli), enterococci, Clostridium perfringens (C. perfringens), and coliphages. Sixty ground-water sampling sites were located either downgradient from areas of dense OWDS or in background areas and included 25 monitoring wells, 34 private wells, and 1 spring. Nine surface-water sampling sites were located on selected streams and tributaries either downstream or upstream from residential development within the Precambrian setting. Sampling results were grouped by their hydrogeologic setting: alluvial, Spearfish, Minnekahta, and Precambrian. Mean downgradient dissolved NO2+NO3 concentrations in ground water for the alluvial, Spearfish, Minnekahta, and Precambrian settings were 0.734, 7.90, 8.62, and 2.25 milligrams per liter (mg/L), respectively. Mean downgradient dissolved chloride concentrations in ground water for these settings were 324, 89.6, 498, and 33.2 mg/L, respectively. Mean downgradient dissolved boron concentrations in ground water for these settings were 736, 53, 64, and 43 micrograms per liter (ug/L), respectively. Mean dissolved surface-water concentrations for NO2+NO3, chloride, and boron for downstream sites were 0.222 mg/L, 32.1 mg/L, and 28 ug/L, respectively. Mean values of delta-15N and delta-18O (isotope ratios of 14N to 15N and 18O to 16O relative to standard ratios) for nitrate in ground-water samples were 10.4 and -2.0 per mil (0/100), respectively, indicating a relatively small contribution from synthetic fertilizer and probably a substantial contribution from OWDS. The surface-water sample with the highest dissolved NO2+NO3 concentration of 1.6 mg/L had a delta-15N value of 12.36 0/100, which indicates warm-blooded animals (including humans) as the nitrate source. Fecal coliforms were detected in downgradient ground water most frequently in the Spearfish (19 percent) and Minnekahta (9.7 percent) settings. E. coli was detected most frequently in the Minnekahta (29 percent) and Spearfish (13 percent) settings. Enterococci were detected more frequently than other microbiological indicators in all four settings. Fecal coliforms and E. coli were detected in 73 percent and 95 percent of all surface-water samples, respectively. Enterococci, coliphages (somatic), and C. perfringens were detected in 50, 70, and 50 percent of surface-water samples, respectively. Of the 62 OWC analytes, 12 were detected only in environmental samples, 10 were detected in at least one environmental and one blank sample (not necessarily companion pairs), 2 were detected only in blank samples, and 38 were not detected in any blank, environmental, or replicate sample from either ground or surface water. Eleven different organic compounds were detected in ground-water samples at eight different sites. The most frequently occurring compound was DEET, which was found in 32 percent of the environmental samples, followed by tetrachloroethene, which was detected in 20 percent of the samples. For surface-water samples, 16 organic compounds were detected in 9 of the 10 total samples. The compound with the highest occurrence in surface-water samples was camphor, which was detected in 50 percent of samples. The alluvial setting was characterized by relatively low dissolved NO2+NO3 concentrations, detection of ammonia nitrogen, and relatively high concentr

South Dakota↗

USGS2020

Groundwater quality and geochemistry of West Virginia’s southern coal fields

Coal mining has been the dominant industry and land use in West Virginia’s southern coal fields since the mid-1800s. Mortality rates for a variety of serious chronic conditions, such as diabetes, heart disease, and some forms of cancer in Appalachian coal mining regions, are higher than in areas lacking substantial coal mining activity within the Appalachian Region or elsewhere in the United States. Causes of the increased mortality and morbidity are not clear, but poor diet, high rates of smoking, socioeconomic factors, and the quality of groundwater used by area residents are all possible contributing factors. This study was conducted by the U.S. Geological Survey in cooperation with the West Virginia Department of Health and Human Resources and the West Virginia Department of Environmental Protection, with grant support from the Centers for Disease Control and Prevention (CDC) to assess the quality of groundwater in southern West Virginia. The data from this assessment of groundwater quality may be used by the CDC and other agencies to potentially investigate the role or lack thereof of groundwater quality with respect to mortality and morbidity rates in the region. The study was conducted in a region where a high density of current or past coal mining combined with a lack of advanced sewage treatment could affect concentrations of commonly occurring constituents plus contaminants, including nitrate, trace metals, major ions, indicator bacteria, radon, hydrogen sulfide, and dissolved hydrocarbons. Because rural residential wells and mine outfalls are considered private sources of water in the region, and are therefore unregulated and unmonitored, water-quality data are sparse. To fill the data gap and assess the groundwater quality in the region, water-quality samples were collected from 60 sites in a 10-county area. The 60 sites sampled included 46 rural residential homeowner wells and 14 mine outfall discharges used for residential supply. For this study, all samples were collected prior to any filtration or other treatments, typically at the pressure tank, and are indicative of total and dissolved constituents in the untreated water. Generally, data for the 60 sites indicate that most waters sampled do not exceed thresholds for most U.S. Environmental Protection Agency (EPA) drinking-water standards and U.S. Geological Survey (USGS) drinking-water screening criteria. However, there were several notable exceptions. Turbidity exceeded the 5-Nephelometric Turbidity Unit (NTU) EPA treatment technique (TT) drinking-water standard in 14 of 60 (23 percent) sites sampled and exceeded the 1-NTU TT standard in 51 of 60 (85 percent) sites sampled. Turbidity is common in many wells in southern West Virginia and may be attributed to iron oxyhydroxide precipitates, sediment carried into the aquifers from the shallow soil zone due to improperly constructed or cased wells or transported to the aquifer in shallow stress-relief fracture zones or through permeable bedding-plane partings. For the sites sampled, 31 of 60 (52 percent) had pH values at, above, or below the upper and lower range of the EPA Secondary Maximum Contaminant Level (SMCL, 6.5–8.5 standard units). Of those 31 sites, 28 (90 percent) were indicative of acidic corrosive water and 3 (10 percent) were indicative of alkaline water. The Langelier Saturation Index (LSI), which is a measure of the corrosivity of the water, was computed for all sites sampled for the study. Eighty-two percent of the sites sampled had waters that were classified as corrosive, based on a LSI less than −0.5. Corrosive water has the potential to leach lead, copper, and other metals from lead, copper, galvanized, or lead-tin soldered connections in water lines. The chloride to sulfate mass ratio also was assessed with the alkalinity to indicate the potential to promote galvanic corrosion (PPGC) of water lines and plumbing fixtures. Only one of the sites (1.7 percent) classified as a corrosive water site, had a PPGC considered high; the remaining sites were classified as having either a moderate (53.3 percent) or low (45 percent) PPGC. Therefore, the type of plumbing systems sampled for this study may be affected by corrosive water, but the potential for leaching trace metals and other constituents from residential plumbing systems containing older galvanized pipes or lead-tin soldered copper pipes is moderate to low. The indicator bacteria total coliform and Escherichia coli ( E. coli ) also were detected in groundwater samples to varying degrees. Total coliforms, which are a broad class of indicator bacteria, are common in groundwater in southern West Virginia and were detected in 39 of the 60 sites (65 percent) sampled. The presence of total coliform bacteria is a potential indicator of surface contamination, due to improperly constructed or cased wells, or infiltration of soil or other surface contaminants into the aquifer or well bore. E. coli bacteria, however, are much more indicative of fecal contamination of groundwater from either human or animal sources, and 14 of the 60 (23 percent) sites sampled had detections of E. coli . Although only a few strains of E. coli are known pathogens, their presence in groundwater may be an indicator of other related pathogens such as viruses and should be regarded as a serious potential issue. Water treatment such as chlorination, ozonation, or ultraviolet light may be appropriate to kill potential pathogenic bacteria or viruses in the source water. Manganese and iron were prevalent contaminants in the groundwater samples collected for this study, with 30 of 60 (50 percent) sites analyzed for manganese and 25 of 60 (42 percent) sites analyzed for iron exceeding the proposed 50- and 300-micrograms per liter (µg/L) SMCL drinking-water standards, respectively, for aesthetic criteria such as taste, odor, or staining of plumbing fixtures. Fourteen of the 60 sites sampled (23 percent) had concentrations of manganese that exceeded the 300-µg/L USGS health-based screening level, and 1 site exceeded the 1,600-µg/L EPA drinking-water equivalent level, which is based on a lifetime exposure level. Sodium is another common constituent in groundwater within the study area. Sodium has an EPA health-based value (HBV) of 20 milligrams per liter (mg/L) for individuals who are on a sodium-restricted diet for blood pressure or other health reasons. Sodium concentrations exceeded the 20-mg/L EPA HBV in 27 of 60 (45 percent) samples. Radon, a naturally occurring carcinogenic radioactive gas known to cause lung cancer, was detected at concentrations at or exceeding the proposed 300-picocuries per liter (pCi/L) EPA Maximum Contaminant Level (MCL) in 12 of the 60 (20 percent) sites sampled. Sites with radon gas concentrations exceeding the 300-pCi/L proposed MCL have the potential for airborne concentrations of radon to exceed the 4-pCi/L indoor air standard. Inhalation of radon can cause lung cancer, and the 4-pCi/L indoor air standard is based on an inhalation standard. Therefore, homeowners whose wells have radon gas concentrations exceeding 300 pCi/L may be advised to have their indoor air tested to determine if indoor air concentrations exceed the 4-pCi/L indoor air standard established by the EPA. Various factors were analyzed statistically and graphically to determine whether they have an influence on groundwater quality within the study area, including topographic setting, well depth, type of mining (surface or underground), type of site (well or mine outfall), and geologic formation. Only geologic formation and the type of site sampled had strong statistical correlations with one or more of the constituents of concern for this study. The overall chemistry of outfalls (mine outfalls) and wells was significantly different, with a much higher dissolved oxygen content in outfalls than in wells. The dissolved oxygen content is the primary component driving the oxidation and reduction of minerals, and the precipitation of minerals that are saturated or super saturated with respect to various cations and anions. Median dissolved oxygen concentrations for the outfalls sampled was 8.75 mg/L, and only 0.4 mg/L for the wells sampled. Median concentrations of sulfate and selenium were much higher in waters from the outfalls sampled, with median concentrations of 73.75 mg/L and 2.35 µg/L, respectively, compared to the wells sampled, which had median concentrations of 18.3 mg/L and less than (<) the 0.05-µg/L method detection limit, respectively. The maximum selenium concentration was for a well, with a concentration of 16.6 µg/L. The geochemical processes that control sulfate and selenium concentrations in groundwater are similar and are the result of the oxidation of sulfide minerals such as pyrite and ferroselite. Iron and manganese concentrations were elevated in most of the wells sampled, with median concentrations of 269.5 and 124.5 µg/L, respectively, but were rarely detected in the outfalls sampled, with median concentrations of < 4.0 and < 0.4 µg/L, respectively. The difference in iron and manganese between wells and outfalls is indicative of the role of dissolved oxygen on processes controlling groundwater chemistry in the region. Three principal geologic formations were assessed for the study, and the overall chemistry for the Pocahontas, New River, and Kanawha Formations varied substantially with respect to several constituents. Concentrations of calcium, magnesium, and total dissolved solids were highest for sites sampled in the Pocahontas Formation, with median concentrations of 41.9, 18.6, and 312 mg/L, respectively. For constituents that are commonly associated with mining activity, the highest concentrations were for sites sampled in the New River Formation, with median concentrations of iron and manganese of 2,450 µg/L and 482 µg/L, respectively, and a median pH of 6.35 standard units. Concentrations of barium also were elevated in samples collected from sites in the New River Formation, with a median barium concentration of 184 µg/L. The source of the barium is not fully known but may be associated with commingling of shallow groundwater with deeper brines or dissolution of the mineral barite. The highest median sulfate concentrations were from sites sampled in the Pocahontas Formation, with a median concentration of 64.0 mg/L. Of the 12 sites at or exceeding the 300-pCi/L proposed drinking-water standard for radon, 8 (67 percent of MCL exceedances) were for sites deriving water from the Kanawha Formation, 3 (25 percent of MCL exceedances) were for sites deriving water from the New River Formation, and only 1 site was for water from the Pocahontas Formation (8 percent of proposed MCL exceedances). Dissolved hydrocarbons, including methane, ethane, propane, propene, n - and i -butane, 1-butene, n - and i -pentane, pentane, 2- and 3-ethyl pentane, hexane, and benzene were analyzed in samples collected from 59 of the 60 sites to assess the potential occurrence and sources of these trace gases in groundwater within the study area. Results of the analysis indicate that most of the gas is of shallow biogenic origin, possibly associated with coal-bed methane, but a subset of samples has a gas signature and a chloride to bromide ratio indicative of potential mixing with deeper thermogenic gases. Only 2 of the 59 (3.3 percent) sites sampled had concentrations of methane gas, which is a highly combustible and explosive gas, exceeding the 10 milligrams per kilogram level of concern established by the U.S. Office of Surface Mining Reclamation and Enforcement. Principal components analysis was used to assess the primary geochemical processes occurring in the aquifers sampled. The first principal component had significant positive loadings for bromide, chloride, silica, ammonia, barium, iron, manganese, and arsenic, and significant negative loadings for dissolved oxygen, potassium, nitrate, and uranium, and reflects reduction and oxidation (redox) processes occurring in deeper anoxic groundwater or shallow oxic groundwater. The strong positive loadings for iron, manganese, barium, and arsenic are correlated with reducing conditions often found deeper in the aquifer. More oxic water is correlated with oxidation of nitrogen species to nitrate and environmental mobilization of uranium and sulfate in shallow wells and mine outfalls.

West Virginia↗