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Field observations of swash zone flow patterns and 3D morphodynamics

Rapid video measurements of foreshore morphology and velocity were collected at Duck, NC in 1997 to investigate sediment transport processes in the swash zone. Estimates of foreshore evolution over a roughly 30 m cross-shore by 80 m alongshore study area were determined using a stereogrammetric technique. During the passage of a small storm (offshore wave heights increased from 1.4 to 2.5 m), the foreshore eroded nearly 40 cm in less than 4 hours. Dense, horizontal surface velocities were measured over a sub-region (roughly 30 m by 40 m) of the study area using a new particle image velocimetry technique. This technique was able to quantify velocities across the bore front approaching 5 m s –1 as well as the rapid velocities in the very shallow backwash flows. The velocity and foreshore topography measurements were used to test a three-dimensional energetics-based sediment transport model. Even though these data represent the most extensive and highly resolved swash measurements to date, the results showed that while the model could predict some of the qualitative trends in the observed foreshore change, it was a poor predictor of the observed magnitudes of foreshore change. Model — data comparisons differed by roughly an order of magnitude with observed foreshore changes on the order of 10's of centimeters and model predictions on the order of meters. This poor comparison suggests that future models of swash-zone sediment transport may require the inclusion of other physical processes such as bore turbulence, fluid accelerations and skewness, infiltration/exfiltration, water depth variations, and variable friction factors (to name a few).

North Carolina↗

Assimilation and regeneration of trace elements by marine copepods

Assimilation efficiencies (AE) of five trace elements (Am, Cd, Co, Se, and Zn) and carbon by neritic copepods (Acartia tonsa and Temora longicornis) feeding at different food concentrations and on different food types (diatoms, green algae, flagellates, dinoflagellates, and Fe oxides) were measured with radiotracer techniques. Food concentration had little influence on AEs of C, Cd, Co, and Se within a range of 16-800 ?? C liter-1. AEs of Am and Zn were highest at low food concentrations (16-56 ??g C liter-1) but remained relatively constant when food levels exceeded 160 ??g C liter-1. Different algal diets had no major influence on AEs, which generally were in the order Cd > Se > Zn > Co > Am. Metals (Cd, Co, and Zn) were assimilated from Fe oxides with 50% less efficiency than from algal cells. Element regeneration into the dissolved phase was a significant route for the release of ingested elements by copepods and increased with increased food concentration. Element regeneration rates for Cd, Se, and Zn were comparable to the regeneration rates of major nutrients such as P (30-70% daily). Retention half-times of elements in decomposing fecal pellets ranged from < 1 d (Cd) to > 10 d (Am). The efficient assimilation and regeneration of Cd, Se, and Zn can significantly lengthen the residence time of these elements in ocean surface waters.

Limnology and Oceanography↗

U.S. Geological Survey Subsidence Interest Group Conference; proceedings of the Technical Meeting, Las Vegas, Nevada, February 14-16, 1995

Introduction to Papers: This report is a compilation of short papers that are based on oral presentations summarizing the results of recent research that were given at the third meeting of the Subsidence Interest Group held in Las Vegas, Nevada, February 14-16, 1995. The report includes case studies of land subsidence and aquifer-system deformation resulting from fluid withdrawal, geothermal development, and mine collapse. Methods for monitoring land subsidence using Global Positioning System technology for the rapid and accurate measurement of changes in land-surface altitude also are described. The current status of numerical simulation of land subsidence in the USGS is summarized, and several of the short papers deal with the development and application of new numerical techniques for simulation and quantification of aquifer system deformation. Not all oral presentations made at the meeting are documented in this report. Several of the presentations were of ongoing research and as such, the findings were provisional in nature and were offered at the meeting to stimulate scientific discussion and debate among colleagues. The information presented in this report, although only a subset of the proceedings of the meeting in Las Vegas, should help expand the scientific basis for management decisions to mitigate or control the effects of land subsidence. The short papers describing the results of these studies provide a cross section of ongoing research in aquifer mechanics and land subsidence and also form an assessment of the current technology and 'state of the science.' The analytical and interpretive methods described in this report will be useful to scientists involved in studies of ground-water hydraulics and aquifer-system deformation.

Open-File Report↗

Hydrogeologic framework and groundwater conditions of the Ararat Basin in Armenia

Armenia is a landlocked country located in the mountainous Caucasus region between Asia and Europe. It shares borders with the countries of Georgia on the north, Azerbaijan on the east, Iran on the south, and Turkey and Azerbaijan on the west. The Ararat Basin is a transboundary basin in Armenia and Turkey. The Ararat Basin (or Ararat Valley) is an intermountain depression that contains the Aras River and its tributaries, which also form the border between Armenia and Turkey and divide the basin into northern and southern regions. The Ararat Basin also contains Armenia’s largest agricultural and fish farming zone that is supplied by high-quality water from wells completed in the artesian aquifers that underlie the basin. Groundwater constitutes about 40 percent of all water use, and groundwater provides 96 percent of the water used for drinking purposes in Armenia. Since 2000, groundwater withdrawals and consumption in the Ararat Basin of Armenia have increased because of the growth of aquaculture and other uses. Increased groundwater withdrawals caused decreased springflow, reduced well discharges, falling water levels, and a reduction of the number of flowing artesian wells in the southern part of Ararat Basin in Armenia. In 2016, the U.S. Geological Survey and the U.S. Agency for International Development (USAID) began a cooperative study in Armenia to share science and field techniques to increase the country’s capabilities for groundwater study and modeling. The purpose of this report is to describe the hydrogeologic framework and groundwater conditions of the Ararat Basin in Armenia based on data collected in 2016 and previous hydrogeologic studies. The study area includes the Ararat Basin in Armenia. This report was completed through a partnership with USAID/Armenia in the implementation of its Science, Technology, Innovation, and Partnerships effort through the Advanced Science and Partnerships for Integrated Resource Development program and associated partners, including the Government of Armenia, Armenia’s Hydrogeological Monitoring Center, and the USAID Global Development Lab and its GeoCenter. The hydrogeologic framework of the Ararat Basin includes several basin-fill stratigraphic units consisting of interbedded dense clays, gravels, sands, volcanic basalts, and andesite deposits. Previously published cross sections and well lithologic logs were used to map nine general hydrogeologic units. Hydrogeologic units were mapped based on lithology and water-bearing potential. Water-level data measured in the water-bearing hydrogeologic units 2, 4, 6, and 8 in 2016 were used to create potentiometric surface maps. In hydrogeologic unit 2, the estimated direction of groundwater flow is from the west to north in the western part of the basin (away from the Aras River) and from north to south (toward the Aras River) in the eastern part of the basin. In hydrogeologic unit 4, the direction of groundwater flow is generally from west to east and north to south (toward the Aras River) except in the western part of the basin where groundwater flow is toward the north or northwest. Hydrogeologic unit 6 has the same general pattern of groundwater flow as unit 4. Hydrogeologic unit 8 is the deepest of the water-bearing units and is confined in the basin. Groundwater flow generally is from the south to north (away from the Aras River) in the western part of the basin and from west to east and north to south (toward the Aras River) elsewhere in the basin. In addition to water levels, personnel from Armenia’s Hydrogeological Monitoring Center also measured specific conductance at 540 wells and temperature at 2,470 wells in the Ararat Basin using U.S. Geological Survey protocols in 2016. The minimum specific conductance was 377 microsiemens per centimeter (μS/cm), the maximum value was 4,000 μS/cm, and the mean was 998 μS/cm. The maximum water temperature was 24.2 degrees Celsius. An analysis between water temperature and well depth indicated no relation; however, spatially, most wells with cooler water temperatures were within the 2016 pressure boundary or in the western part of the basin. Wells with generally warmer water temperatures were in the eastern part of the basin. Samples were collected from four groundwater sites and one surface-water site by the U.S. Geological Survey in 2016. The stable-isotope values were similar for all five sites, indicating similar recharge sources for the sampled wells. The Hrazdan River sample was consistent with the groundwater samples, indicating the river could serve as a source of recharge to the Ararat artesian aquifer.

Ararat Basin↗

Observationally constrained surface mass balance of Larsen C ice shelf, Antarctica

The surface mass balance (SMB) of the Larsen C ice shelf (LCIS), Antarctica, is poorly constrained due to a dearth of in situ observations. Combining several geophysical techniques, we reconstruct spatial and temporal patterns of SMB over the LCIS. Continuous time series of snow height (2.5–6 years) at five locations allow for multi-year estimates of seasonal and annual SMB over the LCIS. There is high interannual variability in SMB as well as spatial variability: in the north, SMB is 0.40 ± 0.06 to 0.41 ± 0.04 m w.e. year −1 , while farther south, SMB is up to 0.50 ± 0.05 m w.e. year −1 . This difference between north and south is corroborated by winter snow accumulation derived from an airborne radar survey from 2009, which showed an average snow thickness of 0.34 m w.e. north of 66° S, and 0.40 m w.e. south of 68° S. Analysis of ground-penetrating radar from several field campaigns allows for a longer-term perspective of spatial variations in SMB: a particularly strong and coherent reflection horizon below 25–44 m of water-equivalent ice and firn is observed in radargrams collected across the shelf. We propose that this horizon was formed synchronously across the ice shelf. Combining snow height observations, ground and airborne radar, and SMB output from a regional climate model yields a gridded estimate of SMB over the LCIS. It confirms that SMB increases from north to south, overprinted by a gradient of increasing SMB to the west, modulated in the west by föhn-induced sublimation. Previous observations show a strong decrease in firn air content toward the west, which we attribute to spatial patterns of melt, refreezing, and densification rather than SMB.

Larsen C Ice Shelf↗

One-Water Hydrologic Flow Model: A MODFLOW based conjunctive-use simulation software

The U.S. Geological Survey’s (USGS) Modular Ground-Water Flow Model (MODFLOW-2005) is a computer program that simulates groundwater flow by using finite differences. The MODFLOW-2005 framework uses a modular design that allows for the easy development and incorporation of new features called processes and packages that work with or modify inputs to the groundwater-flow equation. A process solves a flow equation or set of equations. For example, the central part of MODFLOW is the groundwater-flow process that solves the groundwater-flow equation; the surface-water routing process is an additional process that solves the surface-water flow equation. Packages are code related to the groundwater-flow process. For example, the subsidence package modifies the groundwater-flow process by including aquifer compaction effects on flow. With the development of new packages and processes, the MODFLOW-2005 base framework diverged into multiple independent versions designed for specific simulation needs. This divergence limited each independent MODFLOW release to its specific purpose, so that there was no longer a single, comprehensive, general-purpose hydraulic-simulation framework. The MODFLOW One-Water Hydrologic Flow Model (MF-OWHM, also informally known as OneWater) is an integrated hydrologic flow model that combines multiple MODFLOW-2005 variants in one cohesive simulation software; changes were made to enable multiple capabilities in one code. This fusion of the MODFLOW-2005 versions resulted in a simulation software that can be used to address and analyze a wide class of conjunctive-use, water-management, water-food-security, and climate-crop-water scenarios. As a second core version of MODFLOW-2005, MF-OWHM maintains backward compatibility with existing MODFLOW-2005 versions, with features that include the following: Process-based simulation. Saturated groundwater flow (three-dimensional). Surface-water flow (one- and two-dimensional). Stream and river flow. Lake and reservoir storage. Landscape simulation and irrigated agriculture. Land-use and crop simulation. Root uptake of groundwater. Actual evapotranspiration. Estimated irrigation demand. Reservoir operations. Aquifer compaction and subsidence by vertical model-grid deformation. Seawater intrusion by a sharp-interface assumption. Karst-aquifer and fractured-bedrock flow. Turbulent and laminar-pipe network flow. Unsaturated groundwater flow (one-dimensional). Internal linkages among the processes that couple hydraulic head, flow, and deformation. Redesigned code for faster simulation, increased user-input options, easier model updates, and more robust error reporting than in previous models. MF-OWHM is a MODFLOW-2005 based integrated hydrologic model that can simulate and analyze varying environmental conditions to allow for the evaluation of management options from many components of human and natural water movement through a physically based, supply and demand framework. The term “integrated,” in the context of this report, refers to the tight coupling of groundwater flow, surface-water flow, landscape processes, aquifer compaction and subsidence, reservoir operations, and conduit (karst) flow. Another benefit of this integrated hydrologic model is that models developed to run by MODFLOW-2005, MODFLOW-NWT, MODFLOW-CFP, or MODFLOW-FMP can also be simulated with MF-OWHM. At the time of this report’s publication, MF-OWHM version 2 (MF-OWHM2) does not include a direct internal simulation of snowmelt, advanced mountainous watershed rainfall-runoff simulation, detailed shallow soil-moisture accounting, or atmospheric moisture content. Atmospheric moisture may be accounted for indirectly by, optionally, specifying a pan-evaporation rate, reference evapotranspiration, and precipitation. These features are not included to ensure that simulation runtime remains short enough to enable the use of automated methods of calibrating model parameters to field observations, which typically require many simulation model runs. The MF-OWHM approach is to include as much detail as possible to simulate hydrological processes, providing the simulation runtimes remain reasonable enough to allow for robust parameter estimation and model calibration. To represent both natural and human-influenced flow, MF-OWHM integrates physically based flow processes derived from MODFLOW-2005 in a supply and demand framework. From this integration, the physically based movement of groundwater, surface water, imported water, and precipitation serve as supply to meet consumptive demands associated with irrigated and non-irrigated agriculture, natural vegetation, and urban water uses. Water consumption is determined by balancing the available water supply with water demand, leading to the concept of a demand-driven, supply-constrained simulation. The MF-OWHM Supply-and-Demand Framework is especially useful for the analysis of agricultural water use, where there are often few data available to describe changes in land-use through time, such as crop type and distribution, and the associated changes in groundwater pumpage. This framework attempts to satisfy each land-use water demand with available water supplies—that is, groundwater uptake, precipitation, and irrigation. An option provided in MF-OWHM2 is to automatically increase groundwater pumping for irrigation, which often is unknown, by the calculated residual between demand and the other available sources of supply. From large- to small-scale applications, the physically based supply and demand framework provides key capabilities for simulating and analyzing historical, current, and future conjunctive-use of surface water and groundwater. To achieve the physically based supply and demand framework, the MODFLOW-2005 standard of no inter-package and -process communication was relaxed for MF-OWHM2. Traditional MODFLOW simulation models required that all packages and processes interact through the groundwater-flow equation or by removing the water flow from the simulation domain. For example, the MODFLOW-2005 representation of a groundwater well extracts water from the groundwater-flow equation (by subtraction) and removes it from the simulation domain. This feature is available in the MF-OWHM framework, but options have been added to allow the specification of a use or destination of pumped groundwater within the model domain, for example, it can be used for irrigation, managed aquifer recharge, or return-flow to streams.

Techniques and Methods↗

Use of the Hydrological Simulation Program-FORTRAN and bacterial source tracking for development of the fecal coliform total maximum daily load (TMDL) for Accotink Creek, Fairfax County, Virginia

Impairment of surface waters by fecal coliform bacteria is a water-quality issue of national scope and importance. Section 303(d) of the Clean Water Act requires that each State identify surface waters that do not meet applicable water-quality standards. In Virginia, more than 175 stream segments are on the 1998 Section 303(d) list of impaired waters because of violations of the water-quality standard for fecal coliform bacteria. A total maximum daily load (TMDL) will need to be developed by 2006 for each of these impaired streams and rivers by the Virginia Departments of Environmental Quality and Conservation and Recreation. A TMDL is a quantitative representation of the maximum load of a given water-quality constituent, from all point and nonpoint sources, that a stream can assimilate without violating the designated water-quality standard. Accotink Creek, in Fairfax County, Virginia, is one of the stream segments listed by the State of Virginia as impaired by fecal coliform bacteria. Watershed modeling and bacterial source tracking were used to develop the technical components of the fecal coliform bacteria TMDL for Accotink Creek. The Hydrological Simulation Program-FORTRAN (HSPF) was used to simulate streamflow, fecal coliform concentrations, and source-specific fecal coliform loading in Accotink Creek. Ribotyping, a bacterial source tracking technique, was used to identify the dominant sources of fecal coliform bacteria in the Accotink Creek watershed. Ribotyping also was used to determine the relative contributions of specific sources to the observed fecal coliform load in Accotink Creek. Data from the ribotyping analysis were incorporated into the calibration of the fecal coliform model. Study results provide information regarding the calibration of the streamflow and fecal coliform bacteria models and also identify the reductions in fecal coliform loads required to meet the TMDL for Accotink Creek. The calibrated streamflow model simulated observed streamflow characteristics with respect to total annual runoff, seasonal runoff, average daily streamflow, and hourly stormflow. The calibrated fecal coliform model simulated the patterns and range of observed fecal coliform bacteria concentrations. Observed fecal coliform bacteria concentrations during low-flow periods ranged from 25 to 800 colonies per 100 milliliters, and peak concentrations during storm-flow periods ranged from 19,000 to 340,000 colonies per 100 milliliters. Simulated source-specific contributions of fecal coliform bacteria to instream load were matched to the observed contributions from the dominant sources, which were cats, deer, dogs, ducks, geese, humans, muskrats, and raccoons. According to model results, an 89-percent reduction in the current fecal coliform load delivered from the watershed to Accotink Creek would result in compliance with the designated water-quality goals and associated TMDL.

Virginia↗

Use of the Hydrological Simulation Program-FORTRAN and bacterial source tracking for development of the fecal coliform total maximum daily load (TMDL) for Blacks Run, Rockingham County, Virginia

Impairment of surface waters by fecal coliform bacteria is a water-quality issue of national scope and importance. Section 303(d) of the Clean Water Act requires that each State identify surface waters that do not meet applicable water-quality standards. In Virginia, more than 175 stream segments are on the 1998 Section 303(d) list of impaired waters because of violations of the water-quality standard for fecal coliform bacteria. A total maximum daily load (TMDL) will need to be developed by 2006 for each of these impaired streams and rivers by the Virginia Departments of Environmental Quality and Conservation and Recreation. A TMDL is a quantitative representation of the maximum load of a given water-quality constituent, from all point and nonpoint sources, that a stream can assimilate without violating the designated water-quality standard. Blacks Run, in Rockingham County, Virginia, is one of the stream segments listed by the State of Virginia as impaired by fecal coliform bacteria. Watershed modeling and bacterial source tracking were used to develop the technical components of the fecal coliform bacteria TMDL for Accotink Creek. The Hydrological Simulation Program-FORTRAN (HSPF) was used to simulate streamflow, fecal coliform concentrations, and source-specific fecal coliform loading in Blacks Run. Ribotyping, a bacterial source tracking technique, was used to identify the dominant sources of fecal coliform bacteria in the Blacks Run watershed. Ribotyping also was used to determine the relative contributions of specific sources to the observed fecal coliform load in Blacks Run. Data from the ribotyping analysis were incorporated into the calibration of the fecal coliform model. Study results provide information regarding the calibration of the streamflow and fecal coliform bacteria models and also identify the reductions in fecal coliform loads required to meet the TMDL for Blacks Run. The calibrated streamflow model simulated observed streamflow characteristics with respect to total annual runoff, seasonal runoff, average daily streamflow, and hourly stormflow. The calibrated fecal coliform model simulated the patterns and range of observed fecal coliform bacteria concentrations. Observed fecal coliform bacteria concentrations during low-flow periods ranged from 40 to 7,000 colonies per 100 milliliters, and peak concentrations during storm-flow periods ranged from 33,000 to 260,000 colonies per 100 milliliters. Simulated source-specific contributions of fecal coliform bacteria to instream load were matched to the observed contributions from the dominant sources, which were cats, cattle, deer, dogs, ducks, geese, horses, humans, muskrats, poultry, raccoons, and sheep. According to model results, a 95-percent reduction in the current fecal coliform load delivered from the watershed to Blacks Run would result in compliance with the designated water-quality goals and associated TMDL.

Virginia↗

Use of the Hydrological Simulation Program-FORTRAN and bacterial source tracking for development of the fecal coliform total maximum daily load (TMDL) for Christians Creek, Augusta County, Virginia

Impairment of surface waters by fecal coliform bacteria is a water-quality issue of national scope and importance. Section 303(d) of the Clean Water Act requires that each State identify surface waters that do not meet applicable water-quality standards. In Virginia, more than 175 stream segments are on the 1998 Section 303(d) list of impaired waters because of violations of the water-quality standard for fecal coliform bacteria. A total maximum daily load (TMDL) will need to be developed by 2006 for each of these impaired streams and rivers by the Virginia Departments of Environmental Quality and Conservation and Recreation. A TMDL is a quantitative representation of the maximum load of a given water-quality constituent, from all point and nonpoint sources, that a stream can assimilate without violating the designated water-quality standard. Christians Creek, in Augusta County, Virginia, is one of the stream segments listed by the State of Virginia as impaired by fecal coliform bacteria. Watershed modeling and bacterial source tracking were used to develop the technical components of the fecal coliform bacteria TMDL for Christians Creek. The Hydrological Simulation Program-FORTRAN (HSPF) was used to simulate streamflow, fecal coliform concentrations, and source-specific fecal coliform loading in Christians Creek. Ribotyping, a bacterial source tracking technique, was used to identify the dominant sources of fecal coliform bacteria in the Christians Creek watershed. Ribotyping also was used to determine the relative contributions of specific sources to the observed fecal coliform load in Christians Creek. Data from the ribotyping analysis were incorporated into the calibration of the fecal coliform model. Study results provide information regarding the calibration of the streamflow and fecal coliform bacteria models and also identify the reductions in fecal coliform loads required to meet the TMDL for Christians Creek. The calibrated streamflow model simulated observed streamflow characteristics with respect to total annual runoff, seasonal runoff, average daily streamflow, and hourly stormflow. The calibrated fecal coliform model simulated the patterns and range of observed fecal coliform bacteria concentrations. Observed fecal coliform bacteria concentrations during low-flow periods ranged from 40 to 2,000 colonies per 100 milliliters, and peak concentrations during stormflow periods ranged from 23,000 to 730,000 colonies per 100 milliliters. Additionally, fecal coliform bacteria concentrations were generally higher upstream and lower downstream. Simulated source-specific contributions of fecal coliform bacteria to instream load were matched to the observed contributions from the dominant sources, which were beaver, cats, cattle, deer, dogs, ducks, geese, horses, humans, muskrats, poultry, raccoons, and sheep. According to model results, a 96-percent reduction in the current fecal coliform load delivered from the watershed to Christians Creek would result in compliance with the designated water-quality goals and associated TMDL.

Virginia↗

Using tracers to evaluate streamflow gain-loss characteristics of Terror Creek, in the vicinity of a mine-permit area, Delta County, Colorado, water year 2003

In 2003, the U.S. Geological Survey, in cooperation with Delta County, initiated a study to characterize streamflow gainloss in a reach of Terror Creek, in the vicinity of a mine-permit area planned for future coal mining. This report describes the methods of the study and includes results from a comparison of two sets of streamflow measurements using tracer techniques following the constant-rate injection method. Two measurement sets were used to characterize the streamflow gain-loss associated with reservoir-supplemented streamflow conditions and with natural base-flow conditions. A comparison of the measurement sets indicates that the streamflow gain-loss characteristics of the Terror Creek study reach are consistent between the two hydrologic conditions evaluated. A substantial streamflow gain occurs between measurement locations 4 and 5 in both measurement sets, and streamflow is lost between measurement locations 5 and 7 (measurement set 1, measurement location 6 not visited) and 5 and 6 (measurement set 2). A comparison of the measurement sets above and below the mine-permit area (measurement locations 3 and 7) shows a consistent loss of 0.37 and 0.31 cubic foot per second (representing 5- and 12-percent streamflow losses normalized to measurement location 3) for measurement sets 1 and 2, respectively. This indicates that similar streamflow losses occur both during reservoir-supplemented and natural base-flow conditions, with a mean streamflow loss of 0.34 cubic foot per second for measurement sets 1 and 2. Findings from a previous investigation support the observed streamflow loss between measurement locations 3 and 7 in this study. The findings from the previous investigation indicate a streamflow loss of 0.59 cubic foot per second occurs between these measurement locations. Statistical testing of the differences in streamflow between measurement locations 3 and 7 indicates that there is a discernible streamflow loss. The p-value of 0.0236 for the parametric paired t-test indicates that there is a 2.36-percent probability of observing a sample mean difference of 0.34 cubic foot per second if the population mean is zero. The p-value of 0.125 for the nonparametric exact Wilcoxon signed rank test indicates that there is a 12.5-percent probability of observing a sample mean difference this large if the population mean is zero. The similarity in streamflow gain-loss between measurement sets indicates that the process controlling streamflow may be the same between the two hydrologic conditions evaluated. Gains between measurement locations 4 and 5 may be related to hyporheic flow from tributaries that were dry during the study. No other obvious sources of surface water were identified during the investigation. The cause for the observed streamflow loss between measurement locations 5 and 6 is unknown but may be related to mapped local faulting, 100 years of coal mining in the area, and aquifer recharge.

Scientific Investigations Report↗

Detection, quantitation and identification of enteroviruses from surface waters and sponge tissue from the Florida Keys using real-time RT-PCR

A method was developed for the quantitative detection of pathogenic human enteroviruses from surface waters in the Florida Keys using Taqman (R) one-step Reverse transcription (RT)-PCR with the Model 7700 ABI Prism (R) Sequence Detection System. Viruses were directly extracted from unconcentrated grab samples of seawater, from seawater concentrated by vortex flow filtration using a 100kD filter and from sponge tissue. Total RNA was extracted from the samples, purified and concentrated using spin-column chromatography. A 192-196 base pair portion of the 5??? untranscribed region was amplified from these extracts. Enterovirus concentrations were estimated using real-time RT-PCR technology. Nine of 15 sample sites or 60% were positive for the presence of pathogenic human enteroviruses. Considering only near-shore sites, 69% were positive with viral concentrations ranging from 9.3viruses/ml to 83viruses/g of sponge tissue (uncorrected for extraction efficiency). Certain amplicons were selected for cloning and sequencing for identification. Three strains of waterborne enteroviruses were identified as Coxsackievirus A9, Coxsackievirus A16, and Poliovirus Sabin type 1. Time and cost efficiency of this one-step real-time RT-PCR methodology makes this an ideal technique to detect, quantitate and identify pathogenic enteroviruses in recreational waters. Copyright ?? 2002 Elsevier Science Ltd.

Water Research↗

Diets, equipment, and techniques for maintaining crawfish in the laboratory

One commercial and 4 laboratory prepared extruded, water-stable diets were fed 3 times a week in 1-g portions to juvenile male and female White River crawfish, Procambarus acutus acutus (Girard), for 10 weeks. The. binding material in the laboratory preparation was alginate (Kelgin), whereas that in the commercial preparation was starch. No statistically significant weight differences developed between the groups of crawfish at the end of the 10-week period; all 5 diets were found satisfactory for feeding and maintaining P. acutus acutus in the laboratory, and all test crawfish survived throughout the experimental period. Weight gains were highest in a diet containing 50.5% protein; intermediate in those fed a diet with 46.0% protein; and lowest in those fed diets with 31.7 or 36.3% protein. Crawfish fed the commercial preparation of one of the 46.0% protein diets showed a slightly but not significantly higher weight gain than those fed the laboratory preparation of the diet. In an evaluation of the water stability of 5 commercially prepared animal chow diets and the commercial extruded diet, 2 of the commercial diets disintegrated after one hour exposure in water and the other 3 became bloated after one hour and remained on the surface throughout the 24-hour test. The commercial extruded diet maintained its water stability for the full 24 hours. The commercial preparation of the 46.0% protein diet was successfully used under laboratory conditions for feeding and maintaining the following crawfishes: Cambarellus shufeldtii (Faxon), Cambarus acuminatus Faxon, Orconectes limosus (Rafinesque), O. virilis (Hagen), Procambarus clarkii (Girard), and P. spiculifer (Le conte). In longevity experiments Cambarus diogenes diogenes Girard and Procambarus hinei (Ortmann) now have survived for 8 months on this diet in the laboratory.

Book chapter↗

Effects of error covariance structure on estimation of model averaging weights and predictive performance

When conducting model averaging for assessing groundwater conceptual model uncertainty, the averaging weights are often evaluated using model selection criteria such as AIC, AICc, BIC, and KIC (Akaike Information Criterion, Corrected Akaike Information Criterion, Bayesian Information Criterion, and Kashyap Information Criterion, respectively). However, this method often leads to an unrealistic situation in which the best model receives overwhelmingly large averaging weight (close to 100%), which cannot be justified by available data and knowledge. It was found in this study that this problem was caused by using the covariance matrix, C E , of measurement errors for estimating the negative log likelihood function common to all the model selection criteria. This problem can be resolved by using the covariance matrix, C ek , of total errors (including model errors and measurement errors) to account for the correlation between the total errors. An iterative two-stage method was developed in the context of maximum likelihood inverse modeling to iteratively infer the unknown C ek from the residuals during model calibration. The inferred C ek was then used in the evaluation of model selection criteria and model averaging weights. While this method was limited to serial data using time series techniques in this study, it can be extended to spatial data using geostatistical techniques. The method was first evaluated in a synthetic study and then applied to an experimental study, in which alternative surface complexation models were developed to simulate column experiments of uranium reactive transport. It was found that the total errors of the alternative models were temporally correlated due to the model errors. The iterative two-stage method using C ek resolved the problem that the best model receives 100% model averaging weight, and the resulting model averaging weights were supported by the calibration results and physical understanding of the alternative models. Using C ek obtained from the iterative two-stage method also improved predictive performance of the individual models and model averaging in both synthetic and experimental studies.

Water Resources Research↗

Low-flow characteristics of streams in Maryland and Delaware

Hydrologic information on the variability of streamflow during low-flow periods is needed for the effective management of surface-water resources in Maryland and Delaware. Low-flow characteristics derived from streamflow under natural conditions are presented for 94 continuousrecord gaging stations in Maryland, Delaware, and surrounding States, and for 131 low-flow partial-record gaging stations in Maryland and Delaware. Methods are developed to estimate low-flow characteristics at ungaged stream sites for average 7-, 14-, and 30-consecutive-day lowflow discharges for recurrence intervals of 2, 10, and 20 years. The methods are applicable to unregulated streams in Maryland and Delaware for watersheds having drainage areas ranging from 2.0 to 875 square miles. Maryland and Delaware are divided into four regions on the basis of physiography and the results of regression analyses. The regions are the Eastern Shore region in Maryland and Delaware, the eastern-Piedmont region in Maryland, the western region in Maryland, and the southern region in Maryland. Equations are developed from regression analyses to estimate lowflow characteristics at ungaged sites on ungaged streams for the Eastern Shore region, the easternPiedmont region, and the western region. A generalized least-squares multiple-regression technique is used to develop the estimation equations that relate average 7-, 14-, and 30- consecutive-day low-flow discharges for recurrence intervals of 2, 10, and 20 years to physical and climatological features of drainage basins in the study area. Adjustments are necessary to low-flow discharges estimated from the equation for the western region because of the effects of carbonate rocks on low flows. The adjustment method is based on analysis of the residuals of regional estimation equations and the percentage of the basin underlain by carbonate rocks. An equation is developed on the basis of a distance-weighted average of low-flow discharges at gaging stations to estimate low flow characteristics at ungaged sites on ungaged streams for the southern region. Estimates of the accuracy of low-flow characteristics determined from all regional equations are provided. Two methods are presented for estimating low-flow characteristics at ungaged sites on gaged streams. One method combines low-flow characteristics determined from gaging station data with results from the regional regression equation at the gaging station and at the ungaged site to estimate the low-flow characteristics either upstream or downstream from the gaging station. The other method estimates low-flow characteristics at ungaged sites between gaging stations using a graphical solution. Estimates of accuracy of the low-flow characteristics determined by these methods also are provided.

Delaware, Maryland↗

Integrating remotely acquired and field data to assess effects of setback levees on riparian and aquatic habitat in glacial-melt water rivers

Setback levees, in which levees are reconstructed at a greater distance from a river channel, are a promising restoration technique particularly for alluvial rivers with broad floodplains where river-floodplain connectivity is essential to ecological processes. Documenting the ecological outcomes of restoration activities is essential for assessing the comparative benefits of different restoration approaches and for justifying new restoration projects. Remote sensing of aquatic habitats offers one approach for comprehensive, objective documentation of river and floodplain habitats, but is difficult in glacial rivers because of high suspended-sediment concentrations, braiding and a lack of large, well-differentiated channel forms such as riffles and pools. Remote imagery and field surveys were used to assess the effects of recent and planned setback levees along the Puyallup River and, more generally, the application of multispectral imagery for classifying aquatic and riparian habitats in glacial-melt water rivers. Airborne images were acquired with a horizontal ground resolution of 0.5 m in three spectral bands (0.545-0.555, 0.665-0.675 and 0.790-0.810 ??m) spanning from green to near infrared (NIR) wavelengths. Field surveys identified river and floodplain habitat features and provided the basis for a comparative hydraulic analysis. Broad categories of aquatic habitat (smooth and rough water surface), exposed sediment (sand and boulder) and vegetated surfaces (herbaceous and deciduous shrub/forest) were classified accurately using the airborne images. Other categories [e.g. conifers, boulder, large woody debtis (LWD)] and subdivisions of broad categories (e.g. riffles and runs) were not successfully classified either because these features did not form large patches that could be identified on the imagery or their spectral reflectances were not distinct from those of other habitat types. Airborne imagery was critical for assessing fine-scale aquatic habitat heterogeneity including shallow, low-velocity regions that were not feasible or practical to map in the field in many cases due to their widespread distribution, small size and poorly defined boundaries with other habitat types. At the reach-scale, the setback levee affected the amount and distribution of riparian and aquatic habitats: (1) the area of all habitats was greater where levees had been set back and with relatively more vegetated floodplain habitat and relatively less exposed sediment and aquatic habitat, (2) where levees confine the river, less low-velocity aquatic habitat is present over a range of flows with a higher degree of bed instability during high flows. As river restoration proceeds in the Pacific Northwest and elsewhere, remotely acquired imagery will be important for documenting its effects on the amount and distribution of aquatic and floodplain habitats, complimenting field data as a quantitative basis for evaluating project efficacy.

River Research and Applications↗

Global synthesis of groundwater recharge in semiarid and arid regions

Global synthesis of the findings from ∼140 recharge study areas in semiarid and arid regions provides important information on recharge rates, controls, and processes, which are critical for sustainable water development. Water resource evaluation, dryland salinity assessment (Australia), and radioactive waste disposal (US) are among the primary goals of many of these recharge studies. The chloride mass balance (CMB) technique is widely used to estimate recharge. Average recharge rates estimated over large areas (40–374 000 km 2 ) range from 0·2 to 35 mm year −1 , representing 0·1–5% of long-term average annual precipitation. Extreme local variability in recharge, with rates up to ∼720 m year −1 , results from focussed recharge beneath ephemeral streams and lakes and preferential flow mostly in fractured systems. System response to climate variability and land use/land cover (LU/LC) changes is archived in unsaturated zone tracer profiles and in groundwater level fluctuations. Inter-annual climate variability related to El Niño Southern Oscillation (ENSO) results in up to three times higher recharge in regions within the SW US during periods of frequent El Niños (1977–1998) relative to periods dominated by La Niñas (1941–1957). Enhanced recharge related to ENSO is also documented in Argentina. Climate variability at decadal to century scales recorded in chloride profiles in Africa results in recharge rates of 30 mm year −1 during the Sahel drought (1970–1986) to 150 mm year −1 during non-drought periods. Variations in climate at millennial scales in the SW US changed systems from recharge during the Pleistocene glacial period (≥10 000 years ago) to discharge during the Holocene semiarid period. LU/LC changes such as deforestation in Australia increased recharge up to about 2 orders of magnitude. Changes from natural grassland and shrublands to dryland (rain-fed) agriculture altered systems from discharge (evapotranspiration, ET) to recharge in the SW US. The impact of LU change was much greater than climate variability in Niger (Africa), where replacement of savanna by crops increased recharge by about an order of magnitude even during severe droughts. Sensitivity of recharge to LU/LC changes suggests that recharge may be controlled through management of LU. In irrigated areas, recharge varies from 10 to 485 mm year −1 , representing 1–25% of irrigation plus precipitation. However, irrigation pumpage in groundwater-fed irrigated areas greatly exceeds recharge rates, resulting in groundwater mining. Increased recharge related to cultivation has mobilized salts that accumulated in the unsaturated zone over millennia, resulting in widespread groundwater and surface water contamination, particularly in Australia. The synthesis of recharge rates provided in this study contains valuable information for developing sustainable groundwater resource programmes within the context of climate variability and LU/LC change.

Hydrological Processes↗

Land-Cover Change in the Southern Lake Tahoe Basin, California and Nevada, 1940-2002

The Lake Tahoe basin has been subject to significant landscape-altering human activity since the mid-1850s; in particular, widespread timber harvest from the 1850s to 1920s and urban development from the 1950s to the present. The consequences of changes such as impacted water quality, degraded biotic communities, and increased fire hazard resulting from modern activity have prompted rising levels of concern for the ecological integrity of the region. The goal of this project is to map, quantify, and describe the spatial and temporal distribution and variability of historical changes in land use and land cover in the southern Lake Tahoe basin for the period from 1940 to 2002 in an effort to establish an understanding of regional landscape change. This map shows areas of land-use/land-cover change in a 279-km2 portion of the Lake Tahoe basin identified using change-detection analysis of multitemporal land-use/land-cover datasets for four dates (1940, 1969, 1987, and 2002), which yielded three periods for analysis. Land use/land cover was mapped using manual (visual) interpretation techniques in a geographic information system (GIS) from multiple imagery sources: black-and-white digital orthophotos for 1940 and 1969, natural-color digital orthophotos for 1987, and IKONOS multispectral satellite imagery for 2002. The landscape was classified using a 0.4-hectare (1-acre) minimum mapping unit and a hierarchical classification system. Impervious-surface data was derived directly from the 2002 IKONOS imagery on a per-pixel basis using digital image processing and GIS data integration.

Scientific Investigations Map↗

Determination of human-use pharmaceuticals in filtered water by direct aqueous injection: high-performance liquid chromatography/tandem mass spectrometry

This report describes a method for the determination of 110 human-use pharmaceuticals using a 100-microliter aliquot of a filtered water sample directly injected into a high-performance liquid chromatograph coupled to a triple-quadrupole tandem mass spectrometer using an electrospray ionization source operated in the positive ion mode. The pharmaceuticals were separated by using a reversed-phase gradient of formic acid/ammonium formate-modified water and methanol. Multiple reaction monitoring of two fragmentations of the protonated molecular ion of each pharmaceutical to two unique product ions was used to identify each pharmaceutical qualitatively. The primary multiple reaction monitoring precursor-product ion transition was quantified for each pharmaceutical relative to the primary multiple reaction monitoring precursor-product transition of one of 19 isotope-dilution standard pharmaceuticals or the pesticide atrazine, using an exact stable isotope analogue where possible. Each isotope-dilution standard was selected, when possible, for its chemical similarity to the unlabeled pharmaceutical of interest, and added to the sample after filtration but prior to analysis. Method performance for each pharmaceutical was determined for reagent water, groundwater, treated drinking water, surface water, treated wastewater effluent, and wastewater influent sample matrixes that this method will likely be applied to. Each matrix was evaluated in order of increasing complexity to demonstrate (1) the sensitivity of the method in different water matrixes and (2) the effect of sample matrix, particularly matrix enhancement or suppression of the precursor ion signal, on the quantitative determination of pharmaceutical concentrations. Recovery of water samples spiked (fortified) with the suite of pharmaceuticals determined by this method typically was greater than 90 percent in reagent water, groundwater, drinking water, and surface water. Correction for ambient environmental concentrations of pharmaceuticals hampered the determination of absolute recoveries and method sensitivity of some compounds in some water types, particularly for wastewater effluent and influent samples. The method detection limit of each pharmaceutical was determined from analysis of pharmaceuticals fortified at multiple concentrations in reagent water. The calibration range for each compound typically spanned three orders of magnitude of concentration. Absolute sensitivity for some compounds, using isotope-dilution quantitation, ranged from 0.45 to 94.1 nanograms per liter, primarily as a result of the inherent ionization efficiency of each pharmaceutical in the electrospray ionization process. Holding-time studies indicate that acceptable recoveries of pharmaceuticals can be obtained from filtered water samples held at 4 °C for as long as 9 days after sample collection. Freezing samples to provide for storage for longer periods currently (2014) is under evaluation by the National Water Quality Laboratory.

Techniques and Methods↗