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USGS1963

Nesting ecology and reproductive rate of the red-winged blackbird in tidal marshes of the upper Chesapeake Bay region

The nesting ecology and reproductive rate of the polygynous red-winged blackbird, Agelaius phoeniceus, were studied in the tidal marshes of Maryland during the period of 1958 through 1961. Sixteen nesting colonies were located in six major marsh communities of the Eastern Shore and were visited approximately twice a week from late April to mid-August. The average clutch size for 537 clutches was 3.3 eggs, with a range of 2 to 5 eggs. The ratio of territorial males to nesting females was 1:1.9. There was direct evidence of double broods by four females. The average number of young produced was 4.2 per breeding female or 8.1 per breeding male. Nesting success for the total of 675 active nests was 57%, with a range from 38% to 69% in the colonies. Robust plants that held constant form throughout the nesting season supported 95% of the nests, and the success of these nests was 58%; in contrast, non-robust plants supported only 5% of the nests, and success of this group of nests was only 26%. Nesting success varied with height from ground: 45% for nests less than 2 feet from the ground, 55% for those 2 to 4 feet, and 62% for those more than 4 feet. Histories of 749 nests were summarized by stages: 749 newly built, 675 with eggs, 424 with nestlings, and 388 with fledging young.

Chesapeake Bay region↗

USGS1995

Sample size and allocation of effort in point count sampling of birds in bottomland hardwood forests

To examine sample size requirements and optimum allocation of effort in point count sampling of bottomland hardwood forests, we computed minimum sample sizes from variation recorded during 82 point counts (May 7-May 16, 1992) from three localities containing three habitat types across three regions of the Mississippi Alluvial Valley (MAV). Also, we estimated the effect of increasing the number of points or visits by comparing results of 150 four-minute point counts obtained from each of four stands on Delta Experimental Forest (DEF) during May 8-May 21, 1991 and May 30-June 12, 1992. For each stand, we obtained bootstrap estimates of mean cumulative number of species each year from all possible combinations of six points and six visits. ANOVA was used to model cumulative species as a function of number of points visited, number of visits to each point, and interaction of points and visits. There was significant variation in numbers of birds and species between regions and localities (nested within region); neither habitat, nor the interaction between region and habitat, was significant. For a = 0.05 and a = 0.10, minimum sample size estimates (per factor level) varied by orders of magnitude depending upon the observed or specified range of desired detectable difference. For observed regional variation, 20 and 40 point counts were required to accommodate variability in total individuals (MSE = 9.28) and species (MSE = 3.79), respectively, whereas ? 25 percent of the mean could be achieved with five counts per factor level. Sample size sufficient to detect actual differences of Wood Thrush (Hylocichla mustelina) was >200, whereas the Prothonotary Warbler (Protonotaria citrea) required <10 counts. Differences in mean cumulative species were detected among number of points visited and among number of visits to a point. In the lower MAV, mean cumulative species increased with each added point through five points and with each additional visit through four visits. Although no interaction was detected between number of points and number of visits, when paired reciprocals were compared, more points invariably yielded a significantly greater cumulative number of species than more visits to a point. Still, 36 point counts per stand during each of two breeding seasons detected only 52 percent of the known available species pool in DEF.

Book chapter↗

USGS1998

The reproductive success of lake herring in habitats near shipping channels and ice-breaking operations in the St. Marys River, Michigan, USA

A study of the reproductive success of lake herring ( Coregonus artedi ) in the St. Marys River was conducted in the winters and springs of 1994, 1995, and 1996. The St. Marys River connects Lake Superior to the lower Great Lakes making it an important route for ship traffic. Recent pressure by commercial carriers to extend the shipping season by breaking ice earlier in spring, has raised concerns over the possible adverse effects on lake herring reproduction in the river caused by increased turbidity associated with vessel passage. Lake herring spawn in fall and their eggs overwinter under ice cover on the bottom of the St. Marys River. Hatching occurs in the spring after ice-out when water temperatures rise. Specialized incubators were used to hold fertilized lake herring eggs at four experimental sites, chosen to represent the range of various bottom substrate types of the St. Marys River from boulder rock reefs to soft sediments. In winter, incubators were placed under the ice on the bottom of the river at three sites each year. After ice-out, sites were relocated, and the incubators were retrieved and opened to determine the number of live and dead lake herring eggs and larvae. Survival was consistent from year to year at each site with the lowest survival percentage found at the site with the softest sediments, directly adjacent to the St. Marys River channel and downstream of the mouth of the Charlotte River. River bottom type and geographic location were the most important factors in determining egg survival. Sampling for indigenous larval lake herring was done throughout the spring hatching season in the areas adjacent to the incubator sites using nets and a diver-operated suction sampler. Result indicate that a small population (3) of larval lake herring was present throughout the sampling areas during the springs of 1994, 1995, and 1996 in the St. Marys River.

St. Marys River↗

USGS2024

Longitudinal and seasonal changes of organic matter sources through a semi-arid river-reservoir system

The quality and quantity of organic matter (OM) in a river system directly affects ecosystem health; thus, managers benefit from an in-depth understanding of the drivers and sources of OM. In the Snake River, a highly altered river-reservoir system in the semi-arid western United States, OM production and loading are key drivers of reservoir anoxia, which leads to several deleterious processes such as mercury methylation. However, sources and quantities of OM to the Snake River, and the effects of impoundment on OM moving through the river-reservoir system, are not well understood. Particulate organic carbon (POC), dissolved organic carbon (DOC), particulate nitrogen (PN), chlorophyll a (chl- a ), and δ 15 N–PN and δ 13 C–POC isotopic ratios were measured bi-weekly for over 2 years at four locations through the Snake River Hells Canyon Reservoir Complex to determine spatial and temporal patterns of OM quantities and sources. POC concentrations increased through the riverine zone upstream of the reservoirs, likely due to in situ primary production and/or inputs from tributaries and agricultural drains; then decreased through the most upstream reservoir likely due to particle settling. Isotopic ratios and other OM source indicators (δ 15 N–PN, δ 13 C–POC, POC:PN, chl- a :POC) show that the dominant source of particulate OM was phytoplankton with seasonal terrestrial/macrophytic inputs. Results highlight the effects of major tributary and agricultural drain inputs, primary production, and impoundment on OM composition and concentration through a large river-reservoir system and may inform water quality management efforts in this and similar systems.

Idaho, Oregon↗

USGS2014

Mapping irrigated areas in Afghanistan over the past decade using MODIS NDVI

Agricultural production capacity contributes to food security in Afghanistan and is largely dependent on irrigated farming, mostly utilizing surface water fed by snowmelt. Because of the high contribution of irrigated crops (> 80%) to total agricultural production, knowing the spatial distribution and year-to-year variability in irrigated areas is imperative to monitoring food security for the country. We used 16-day composites of the Normalized Difference Vegetation Index (NDVI) from the Moderate Resolution Imaging Spectroradiometer (MODIS) sensor to create 23-point time series for each year from 2000 through 2013. Seasonal peak values and time series were used in a threshold-dependent decision tree algorithm to map irrigated areas in Afghanistan for the last 14 years. In the absence of ground reference irrigated area information, we evaluated these maps with the irrigated areas classified from multiple snapshots of the landscape during the growing season from Landsat 5 optical and thermal sensor images. We were able to identify irrigated areas using Landsat imagery by selecting as irrigated those areas with Landsat-derived NDVI greater than 0.30–0.45, depending on the date of the Landsat image and surface temperature less than or equal to 310 Kelvin (36.9 ° C). Due to the availability of Landsat images, we were able to compare with the MODIS-derived maps for four years: 2000, 2009, 2010, and 2011. The irrigated areas derived from Landsat agreed well r 2 = 0.91 with the irrigated areas derived from MODIS, providing confidence in the MODIS NDVI threshold approach. The maps portrayed a highly dynamic irrigated agriculture practice in Afghanistan, where the amount of irrigated area was largely determined by the availability of surface water, especially snowmelt, and varied by as much as 30% between water surplus and water deficit years. During the past 14 years, 2001, 2004, and 2008 showed the lowest levels of irrigated area (~ 1.5 million hectares), attesting to the severe drought conditions in those years, whereas 2009, 2012 and 2013 registered the largest irrigated area (~ 2.5 million hectares) due to record snowpack and snowmelt in the region. The model holds promise the ability to provide near-real-time (by the end of the growing seasons) estimates of irrigated area, which are beneficial for food security monitoring as well as subsequent decision making for the country. While the model is developed for Afghanistan, it can be adopted with appropriate adjustments in the derived threshold values to map irrigated areas elsewhere.

Remote Sensing of Environment↗

USGS2025

Precipitation timing mediates life-stage and population-level associations with climate for an indicator species

Global climate change is contributing to declines in biodiversity, although changes vary across geographic regions and species. The iconic greater sage-grouse (Centrocercus urophasianus; sage-grouse) is central to conservation within the North American sagebrush ecosystem, yet its vulnerability to climate effects remains poorly understood. We used hierarchical models to explore weather and climatic influences on sage-grouse across nearly four decades, focusing first on pattern (population change), then process (demographic life stage). We quantified eight indicators of temperature and/or moisture conditions across time lags of 0–1.5 years leading up to current year breeding activities. Sage-grouse population growth tended to increase following above-average growing season precipitation. Precipitation or drought timing influenced whether process effects were positive or negative. More summer and/or fall moisture corresponded with increases in subsequent year brood and adult survival, while concurrent seasonal drought led to reductions in nest survival. Positive concurrent spring drought associations with adult and brood survival were largely outweighed by positive prior year moisture effects. Density-dependence and indirect effects of precipitation through vegetation and forage resource pathways likely contributed to nuanced responses across life stages. Our research improves mechanistic understanding of this indicator species’ sensitivity to climatic factors, while reinforcing the importance of large-scale conservation initiatives for sagebrush ecosystems.

Scientific Reports↗

USGS2004

Modeling chinook salmon with SALMOD on the Sacramento River, California

Four races of Pacific salmon crowd the Sacramento River below a large reservoir that prevents access to historical spawning grounds. Each race is keyed to spawn at specific times through the year. A salmon population model was used to estimate: (1) the effects that unique run timing, interacting with seasonal river flows and water temperatures, have on each race; and (2) which habitats appeared to be the most limiting for each race. The model appeared to perform well without substantive calibration. Late fall, winter, and spring run Chinook do not appear to have the same production potential as fall run Chinook even though fall run production is more variable than that for the other three races. Spring fish have the lowest production on average, and production appears to be declining through time, perhaps making that race harder to recover should the population become more depressed. Rearing habitat appears to be the factor most limiting production for all races, but water temperature is responsible for most year-to-year production variation.

Hydroécologie Appliquée↗

USGS2011

Total dissolved gas and water temperature in the lower Columbia River, Oregon and Washington, water year 2010: Quality-assurance data and comparison to water-quality standards

Significant Findings When water is released through the spillways of dams, air is entrained in the water, increasing the downstream concentration of dissolved gases. Excess dissolved-gas concentrations can have adverse effects on freshwater aquatic life. The U.S. Geological Survey (USGS), in cooperation with the U.S. Army Corps of Engineers, collected dissolved-gas and water-temperature data at eight monitoring stations on the lower Columbia River in Oregon and Washington in 2010. Significant findings from the data include: During the spill season of April through August 2010, hourly values of total dissolved gas (TDG) were occasionally larger than 115-percent saturation for the forebay stations (John Day navigation lock, The Dalles forebay, Bonneville forebay, and Camas). Hourly values of total dissolved gas were occasionally larger than 120-percent saturation for four tailwater stations (John Day Dam tailwater, The Dalles tailwater, Cascade Island, and Warrendale). From late July to late August or early September 2010, hourly water temperatures were greater than 20°C (degrees Celsius) at the eight stations on the lower Columbia River. According to the State of Oregon temperature standard, the 7-day average maximum temperature of the lower Columbia River should not exceed 20°C Washington regulations state that the 1-day maximum should not exceed 20°C as a result of human activities. All 105 laboratory checks of the TDG sensors (without the membrane attached) with a certified pressure gage were within ± (plus or minus) 0.5 percent saturation after 3 to 4 weeks of deployment in the river. All but 1 of the 85 in situ field checks of TDG sensors with a secondary standard were within ± 2.0-percent saturation after 3-4 weeks of deployment in the river. All 88 of the field checks of barometric pressure were within ± 1 millimeter of mercury of a primary standard, and all 87 water-temperature field checks were within ± 0.2 ° C of a secondary standard. For the eight monitoring stations in water year 2010, a total of 99.7 percent of the TDG data were received in real time and were within 1-percent saturation of the expected value on the basis of calibration data, replicate quality-control measurements in the river, and comparison to ambient river conditions at adjacent stations. Data received from the individual stations ranged from 98.4 to 100.0 percent complete.

Oregon, Washington↗

USGS2006

Evaluation of emerging contaminants of concern at the South District Wastewater Treatment Plant based on seasonal sampling events, Miami-Dade County, Florida, 2004

The Comprehensive Everglades Restoration Plan has identified highly treated wastewater as a possible water source for the restoration of natural water flows and hydroperiods in selected coastal areas, including the Biscayne Bay coastal wetlands. One potential source of reclaimed wastewater for the Biscayne Bay coastal wetlands is the effluent from the South District Wastewater Treatment Plant in southern Miami-Dade County. The U.S. Geological Survey, in cooperation with the Comprehensive Everglades Restoration Plan Wastewater Reuse Technology Pilot Project Delivery Team, initiated a study to assess the presence of emerging contaminants of concern in the South District Wastewater Treatment Plant influent and effluent using current wastewater-treatment methods. As part of the study, 24-hour composite and discrete samples were collected at six locations (influent at plants 1 and 2, effluent pump, reuse train, chlorine dioxide unit, and ultraviolet pilot unit) at the plant during: (1) a dry-season, low-flow event on March 2-3, 2004, with an average inflow rate of 83.7 million gallons per day; (2) a wet-season, average-flow event on July 20-21, 2004, with an average inflow rate of 89.7 million gallons per day; and (3) high-rate disinfection tests on October 5 and 20, 2004, with average flow rates of 84.1 and 119.6 million gallons per day, respectively. During these four sampling events, 26, 27, 29, and 35 constituents were detected, respectively. The following transformations in concentration were determined in the waste stream: -100 to 180 percent at the effluent pump and -100 to 85 percent at the reuse train on March 2-3, 2004, and -100 to 1,609 percent at the effluent pump and -100 to 832 percent at the reuse train on July 20-21, 2004; -100 to -37 percent at the effluent pump, -100 to -62 percent at the reuse train, -100 to -56 percent at the chlorine dioxide unit, and -100 to -40 percent at the ultraviolet pilot unit on October 5, 2004; and -100 to -4 percent at the effluent pump, -100 to 17 percent at the reuse train, -100 to -40 percent at the chlorine dioxide unit, and -100 to -14 percent at the ultraviolet pilot unit on October 20, 2004. Samples were tested for detection of household and industrial (organic) wastewater compounds, pharmaceutical compounds, antibiotic compounds, and hormones in influent. Two 'known' endocrine disrupting compounds?17 beta-estradiol (E2) and diethoxynonylphenol? and four 'suspected' endocrine-disrupting compounds?1,4-dichlorobenzene, benzophenone, tris(2-chloroethyl) phosphate, and tris(dichloroisopropyl) phosphate?were detected during these sampling events. Phenanthrene and indole showed the greatest concentration ranges and highest concentrations for the organic wastewater compounds. Acetaminophen showed the greatest concentration range and highest concentration, and warfarin showed the smallest concentration range for the pharmaceutical compounds. Sulfamethoxazole (a sulfonamide) showed the greatest concentration range and highest concentration, and sulfathiozole (also a sulfonamide) showed the smallest concentration range for the antibiotic compounds. Two hormones, 17 beta-estradiol (E2) and estrone (E1), were detected in influent. Samples were also tested for detection of organic wastewater compounds, pharmaceutical compounds, antibiotic compounds, and hormones in effluent. Indole showed the greatest concentration range and highest concentration, and triphenyl phosphate showed the smallest concentration range for the organic wastewater compounds. Dehydronifedipine showed the greatest concentration range and highest concentration, and warfarin had the smallest concentration range for the pharmaceutical compounds. Anhydro-erythromycin (a macrolide degradation product) showed the greatest concentration range, and sulfadiazine (a sulfonamide) and tetracycline showed the lowest concentration ranges for the antibiotic compounds. One hormone, 17 beta-estradiol (E2), was det

Florida↗

USGS1964

Age, growth, sex ratio, and maturity of the whitefish in central Green Bay and adjacent waters of Lake Michigan

This study is based on 1,023 whitefish, Coregonus clupeaformis (Mitchill)--819 in seven samples from five localitites in central Green Bay in 1948-49 and 1851-52 and 204 in a single 1948 collection from northwestern Lake Michigan proper. Records of age indicated unusual strength for only one year class--1943 which strongly dominated the 1948 sample from Lake Michigan and the 1949 sample from Green Bay and was well represented in the 1948 collection from green Bay. Collection of 1951-52 without exception were dominated by age group III. Length distributions of samples varied widely according to the age composition. Among fish more than 2 years old, the length distributions of age groups overlapped broadly. Several 1-inch intervals included fish of four age groups. The length-weight relation varied considerably among central Green Bay samples, but differences among localitites were nearly equalled by the year-to-year difference at a single locality. Lake Michigan whitefish were generally lighter than those from Green Bay. Weight increased to the 3.386 power of length in Green Bay (combined samples) and the 3.359 power in Lake Michigan. Growth in length, calculated by direct proportion from diameter measurements of growth fields on scales, differed among localities in central Green Bay and between samples of different years at a single locality. If permanent locality differences exist they are not large and can be obscured by the evident annual fluctuations of growth. The grand average calculated length of Green Bay whitefish (combined collections) exceeded that of Lake Michigan fish in all years of life. The advantage was greatest (2.2 inches) at 3 years (calculated lengths of 16.0 inches and 13.8 inches) and subsequently declined to 0.5 inch at 9 years (lengths of 24.6 and 24.1 inches). Both groups reached the minimum legal length of 17 inches during the fourth growing season. Green Bay whitefish also had the larger calculated weights. The advantage reached 9.3 ounces in 3 years (calculated weights of 22.4 and 13.1 ounces). In years of life 4-9, the weight advantage over Lake Michigan fish ranged from 8.7 ounces, (seventh year; weights of 74.4 and 65.7 ounces) to 12.2 ounces (ninth year; weights of 96.2 and 84.0 ounces). Comparison of growth of whitefish at four localities in northern Lake Michigan indicates that fastest growth is in central Green Bay and slowest near the Fox Islands. Growth is intermediate and similar in northwestern Lake Michigan proper and sorthern Green Bay. Youngest mature male whitefish in green Bay belonged to age group II and youngest mature females to age group III. All IV-group fish were mature. Shortest mature males were at 14.5-14.9 inches and shortest mature females at 16.5-16.9 inches. All males longer than 17.9 inches and all females longer than 18.4 inches were mature.

Fishery Bulletin of the U.S. Fish and Wildlife Ser↗

USGS2004

Surface- and ground-water relations on the Portneuf river, and temporal changes in ground-water levels in the Portneuf Valley, Caribou and Bannock Counties, Idaho, 2001-02

The State of Idaho and local water users are concerned that streamflow depletion in the Portneuf River in Caribou and Bannock Counties is linked to ground-water withdrawals for irrigated agriculture. A year-long field study during 2001 02 that focused on monitoring surface- and ground-water relations was conducted, in cooperation with the Idaho Department of Water Resources, to address some of the water-user concerns. The study area comprised a 10.2-mile reach of the Portneuf River downstream from the Chesterfield Reservoir in the broad Portneuf Valley (Portneuf River Valley reach) and a 20-mile reach of the Portneuf River in a narrow valley downstream from the Portneuf Valley (Pebble-Topaz reach). During the field study, the surface- and ground-water relations were dynamic. A losing river reach was delineated in the middle of the Portneuf River Valley reach, centered approximately 7.2 miles downstream from Chesterfield Reservoir. Two seepage studies conducted in the Portneuf Valley during regulated high flows showed that the length of the losing river reach increased from 2.6 to nearly 6 miles as the irrigation season progressed.Surface- and ground-water relations in the Portneuf Valley also were characterized from an analysis of specific conductance and temperature measurements. In a gaining reach, stratification of specific conductance and temperature across the channel of the Portneuf River was an indicator of ground water seeping into the river.An evolving method of using heat as a tracer to monitor surface- and ground-water relations was successfully conducted with thermistor arrays at four locations. Heat tracing monitored a gaining reach, where ground water was seeping into the river, and monitored a losing reach, where surface water was seeping down through the riverbed (also referred to as a conveyance loss), at two locations.Conveyance losses in the Portneuf River Valley reach were greatest, about 20 cubic feet per second, during the mid-summer regulated high flows. Conveyance losses in the Pebble-Topaz reach were greatest, about 283 cubic feet per second, during the spring regulated high flows and were attributed to a hydroelectric project.Comparison of water levels in 30 wells in the Portneuf Valley during September and October 1968 and 2001 indicated long-term declines since 1968; the median decline was 3.4 feet. September and October were selected for characterizing long-term ground-water-level fluctuations because declines associated with irrigation reach a maximum at the end of the irrigation season. The average annual snowpack in the study area has declined significantly; 1945 85 average annual snowpack was 16.1 inches, whereas 1986 through 2002 average annual snowpack was 11.6 inches. Water-level declines during 1998 2002 may be partially attributable to the extended dry climatic conditions. It is unclear whether the declines could be partially attributed to increases in ground-water withdrawals. Between 1968 and 1980, water rights for ground-water withdrawals nearly doubled from 23,500 to 46,000 acre-feet per year. During this period, ground-water levels were relatively constant and did not exhibit a declining trend that could be related to increased ground-water withdrawal rights. However, ground-water withdrawals are not measured in the valley; thus, the amount of water pumped is not known. Since the 1990s, there have been several years when the Chesterfield Reservoir has not completely refilled, and the water in storage behind the reservoir has been depleted by the middle of the irrigation season. In this situation, surface-water diversions for irrigation were terminated before the end of the irrigation season, and irrigators, who were relying in part on diversions from the Portneuf River, had to rely solely on ground water as an alternate supply. Smaller volumes of water in the Chesterfield Reservoir since the 1990s indicate a growing demand for ground-water supplies.

Scientific Investigations Report↗

USGS1998

Water-quality characteristics of the Slate and East rivers, Colorado, during the winter recreational season, December 1996

Periods of population influxes during winter recreation occur simultaneously with periods of extreme low flow in many Rocky Mountain areas. The ability of streams to assimilate additional nutrient loading is reduced by the low-flow conditions. Low-flow water-quality characteristics of the Slate and East Rivers, which drain the Crested Butte area, were investigated in December 1996. Six sites were chosen for evaluation-four on the Slate River and two on the East River-to assess water-quality conditions, including nutrient (nitrogen and phosphorus) concentrations and algal biomass, during a 24-hour period. Discharge in the Slate River ranged from about 18 to 30 cubic feet per second, and discharge in the East River downstream from the mouth of the Slate River was about 80 cubic feet per second. Chemical concentrations in water in the Slate and East Rivers generally were dilute with specific-conductance values of 175 to 300 microsiemens per centimeter and alkalinity values of 40 to 110 milligrams per liter during low-flow conditions. Dissolved oxygen was at or near saturation at all measurements sites. Ammonia nitrogen concentrations increased downstream from Crested Butte and Mount Crested Butte in the Slate River and then returned to background concentrations in the East River. Concentrations of nitrite plus nitrate nitrogen increased downstream from the Crested Butte area, probably associated with the nitrification of the ammonia to nitrate, and concentrations then were diluted in the East River downstream from the confluence of the Slate River. Phosphorus concentrations also increased slightly in the reach downstream from Crested Butte and Mount Crested Butte. Algal biomass values increased downstream from the Crested Butte area, decreased to low values in a subsequent reach, and then returned to higher values downstream. Biomass values were similar to those found in unenriched to moderately enriched streams. The lower biomass and higher phosphorus values occurred in a reach that was covered completely with ice and snow. Algal biomass in this reach was extremely low, probably due to the absence of light. The biomass values upstream and downstream from this reach were moderately high and probably resulted in the lower phosphorus and possibly somewhat lower nitrogen, which suggests that benthic algae may be partially controlling the nutrient levels through assimilation and uptake. When light conditions restrict algal growth and subsequent loading occurs, the concentrations of phosphorus increase slightly. Once the physical limitation (absence of light) is removed, the biomass responds with a corresponding decrease in phosphorus. The nutrient concentrations were low and well below stream standards. Nutrient increases were measured downstream from Crested Butte and Mount Crested Butte, and these increases resulted in an increase of algal biomass. Overall results indicate that, at the present time, the Slate and East Rivers can assimilate winter low-flow nutrient loads.

Colorado↗

USGS2002

Testing pop-up satellite tags as a tool for identifying critical habitat for Pacific halibut ( Hippoglossus stenolepis ) in the Gulf of Alaska

To maintain healthy commercial and sport fisheries for Pacific halibut ( Hippoglossus stenolepis ), critical habitat must be defined by determining life history patterns on a daily and seasonal basis. Pop-up satellite archival transmitting (PSAT) tags provide a fisheries-independent method of collecting environmental preference data (depth and ambient water temperature) as well as daily geolocation estimates based on ambient light conditions. In this study, 14 adult halibut (107-165 cm FL) were tagged and released with PSAT tags in and around Resurrection Bay, Alaska. Commercial fishermen recovered two tags, while five tags transmitted data to ARGOS satellites. Horizontal migration was not consistent among fish as three halibut remained in the vicinity of release while four traveled up to 358 km from the release site. Vertical migration was not consistent among fish and over time, but they spent most their time between 150-350 m. The minimum and maximum depths reached by any of the halibut were 2m and 502m, respectively. The fish preferred water temperatures of roughly 6 °C while experiencing ambient temperatures between 4.3 °C and 12.2 °C. Light attenuation with depth prevented existing geolocation software and light sensing hardware from accurately estimating geoposition, however, information from temperature, depth, ocean bathymetry, and pop-off locations provided inference on fish movement in the study area. PSAT tags were a viable tool for determining daily and seasonal behavior and identifying critical halibut habitat, which will aid fisheries managers in future decisions regarding commercial and sport fishing regulations.

Alaska↗

USGS2025

Advancing broadscale spatial evapotranspiration modelling by incorporating sun-induced chlorophyll fluorescence measurements

Evapotranspiration (ET) describes the sum of water transfer from the ground surface through soil evaporation and water loss from leaf stomata into the atmosphere − critical factors linking the global water and carbon cycles. Myriad ET models based on remote sensing data provide spatially continuous estimates of ET; however, leaf photosynthetic information is critical to ensure accurate ET estimates, which are difficult to measure from space. Remotely sensed sun-induced chlorophyll fluorescence (SIF) provides a proxy of stomatal conductance activity with high performance in predicting plant transpiration, which can account for a large proportion of terrestrial and riverine ET. This study aims to improve estimates of tree water use in semi-arid to arid environments. In this study, a fixed stomatal conductance model and three SIF-driven canopy conductance (g sc ) models were applied to model potential ET (PET). The models estimated PET using the Penman-Monteith equation with: (1) a constant leaf stomatal conductance; (2) a transpiration-driven g sc model; (3) a g sc model based on electron-transfer rate and vapor pressure deficit, and a (4) Ball-Berry stomatal conductance model. A machine learning model was then applied to scale PET to actual ET (AET) using remote sensing and climate data. Accordingly, four AET models were cross-validated with in-situ measured AET at 52 sites, including 21 eddy covariance flux tower sites, and 31 sap-flow measurement sites (semi-arid and plantation area), for various plant functional types in Australia. This study demonstrated that SIF effectively captured seasonal variations of g sc , finding that AET models with SIF-driven g sc models correlated well with in-situ measured AET (R 2 = 0.64). Modelled AET with dynamic variations of g sc generated lower prediction error (0.85 mm day −1 ), while the AET model with fixed stomatal conductance tended to overestimate AET in floodplains and underestimate it in evergreen broadleaf forests, indicating using fixed stomatal conductance results in unstable performance when modelling AET. This study demonstrated that SIF-driven AET models improved broadscale estimation of ET. Our findings provide vital broadscale hydrological data to assist catchment and regional water management, particularly over unmonitored areas at risk of future climate-driven reductions in rainfall.

Journal of Hydrology↗

USGS2025

Landscape transcriptomic analysis detects thermal stress responses and potential adaptive variation in wild brook trout (Salvelinus fontinalis) during successive heatwaves

Extreme weather events, such as heatwaves, are becoming more frequent and intense as a result of climate change. Critically, such extreme weather events can be more important drivers of extirpation and selection than changes in annual or seasonal averages and they pose a particularly large threat to poikilothermic organisms. In this study, we evaluated the transcriptomic response of a coldwater adapted fish species, the eastern brook trout ( Salvelinus fontinalis ), to two successive heatwaves during July and August 2022. We sampled brook trout at eight time points from four streams ( N = 116 fish), sequenced mRNA from gill samples using TagSeq, and quantified expression levels of 32,670 unique transcripts. Multivariate analyses found that overall expression patterns in response to water temperature change were similar among streams. These analyses further detected groups of genes involved in immune response and oxygen carrier activity that were upregulated and downregulated respectively at higher water temperatures. We also detected 43 genes that were differentially expressed at different time points and followed the same expression pattern during the two heatwaves. Of these genes, 42 covaried with water temperature and most (27, 62.8 %) exhibited responses that varied by stream. Some of the differentially expressed genes, including heat shock proteins and cold-inducible RNA binding proteins, have been widely linked to temperature responses in experimental studies, whereas other genes we identified have functions that have not been well-studied in relationship to temperature or have unknown functions. This study shows the utility of landscape transcriptomic approaches to identify important biological processes governing wild organismal responses to short-term stressors. The results of this study can guide future investigations to identify phenotypic and genetic diversity that contribute to adaptive responses to heatwaves and improve predictions of how populations will respond to future climate change.

Pennsylvania↗

USGS2023

Drought survival strategies differ between coastal and montane conifers in northern California

Increasingly severe and prolonged droughts are contributing to tree stress and forest mortality across western North America. However, in many cases, we currently have poor information concerning how drought responses in forests vary in relation to competition, climate, and site and tree characteristics. We used annual tree ring evidence of 13 C discrimination (Δ 13 C) and growth metrics to assess drought resistance and resilience for six conifer species at the intersection of several bioregions in northern California. Within each species' range in northern California, we collected competition and tree characteristics from 270 focal trees across sites that varied from wetter to drier habitat conditions (54 sites). Across sites, all six conifer species weathered the severe 2013–2015 drought with reasonably high resistance and post-drought resilience. However, we found important differences in drought responses between coastal and montane species based on annual growth and Δ 13 C metrics. Broadly, the two coastal species showed consistent declines in drought resistance across successive drought years, whereas the four montane species maintained high drought resistance across drought years. More specifically, we found lower Δ 13 C and growth during drought years in coastal species, suggesting stomatal closure during drought with the potential for vulnerability to carbon depletion during long-term drought. Conversely, Δ 13 C and growth were stable in montane species throughout the drought, which may contribute to hydraulic failure under increased drought frequency and/or severity. We also evaluated environmental factors that affect Δ 13 C using data from before and during the drought. These physiological models were consistent for the two coastal species, with a positive relationship between annual precipitation and Δ 13 C and a negative relationship between tree density and Δ 13 C. Conversely, the four montane models illustrated a greater importance of site conditions on drought responses for these species. Our findings show differential risk for drought stress across diverse conifers during severe drought. This work highlights the importance of site and tree characteristics in determining drought responses across cool, annually humid coastal habitats to seasonally dry montane habitats.

California↗

USGS2009

Climatic and limnologic setting of Bear Lake, Utah and Idaho

Bear Lake is a large alkaline lake on a high plateau on the Utah-Idaho border. The Bear River was partly diverted into the lake in the early twentieth century so that Bear Lake could serve as a reservoir to supply water for hydropower and irrigation downstream, which continues today. The northern Rocky Mountain region is within the belt of the strongest of the westerly winds that transport moisture during the winter and spring over coastal mountain ranges and into the Great Basin and Rocky Mountains. As a result of this dominant winter precipitation pattern, most of the water entering the lake is from snowmelt, but with net evaporation. The dominant solutes in the lake water are Ca 2+ , Mg 2+ , and HCO 3 2- , derived from Paleozoic carbonate rocks in the Bear River Range west of the lake. The lake is saturated with calcite, aragonite, and dolomite at all depths, and produces vast amounts of carbonate minerals. The chemistry of the lake has changed considerably over the past 100 years as a result of the diversion of Bear River. The net effect of the diversion was to dilute the lake water, especially the Mg 2+ concentration. Bear Lake is oligotrophic and coprecipitation of phosphate with CaCO 3 helps to keep productivity low. However, algal growth is colimited by nitrogen availability. Phytoplankton densities are low, with a mean summer chlorophyll a concentration of 0.4 mg L -1 . Phytoplankton are dominated by diatoms, but they have not been studied extensively (but see Moser and Kimball, this volume). Zooplankton densities usually are low (<10 L -1 ) and highly seasonal, dominated by calanoid copepods and cladocera. Benthic invertebrate densities are extremely low; chironomid larvae are dominant at depths <30 m, and are partially replaced with ostracodes and oligochaetes in deeper water. The ostracode species in water depths >10 m are all endemic. Bear Lake has 13 species of fi sh, four of which are endemic. Copyright ?? 2009 The Geological Society of America.

Special Paper of the Geological Society of America↗

USGS1973

Changes in the visual pigments of trout

The proportions of two visual pigments (rhodopsin and porphyropsin) were examined in four species of trout under experimental and natural conditions. Brook trout ( Salvelinus fontinalis ), rainbow trout ( Salmo gairdneri ), and brown trout ( Salmo trutta ) have different relative proportions of visual pigments in their retinae. The visual pigment balance in wild cutthroat trout ( Salmo clarki ) is related to forest canopy (access to light) and season. The brown trout have a more red-sensitive and less labile pair of visual pigments than brook or rainbow trout, which respond to photic conditions by increasing the proportion of porphyropsin (in light) and increasing rhodopsin (in darkness). The brown trout have a high percentage of porphyropsin, regardless of experimental conditions. This result does not reflect an inability to form rhodopsin but rather may relate to a consistently high proportion of 3-dehydroretinol in the pigment epithelium. The possible advantages and mechanisms of environmental control of trout visual pigment absorbance, as currently understood, are discussed.

Canadian Journal of Zoology↗