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At least 739 records · Page 41Linked to original sources
USGS1988

Bottom sediments and nutrients in the tidal Potomac system, Maryland and Virginia

The characteristics and distributions of near-surface bottom sediments and of nutrients in the sediments provide information on modern sediment and nutrient sources, sedimentation environments, and geochemical reactions in the tidal Potomac system, Maryland and Virginia. This information is fundamental to an improved understanding of sedimentation and eutrophication problems in the tidal Potomac system. The tidal Potomac system consists of 1,230 square kilometers of intertidal to subtidal Potomac mainstem and tributary streambed from the heads-of-tides to Chesapeake Bay. Tidal Potomac sediments are dominantly silt and clay except in local areas. An average sediment sample is about two-thirds silt and clay (fine) particles and one-third sand (coarse) particles. The mean of the median size of all samples is 6.60 phi, or 0.010 millimeters. Sorting generally is poor and the average sediment is skewed toward the fine tail of the size-distribution curve. Mean particle-size measures have large standard deviations. Among geomorphic units, two distinctly different size populations are found; fine (median phi about 9), and poorly sorted (sorting about 3) sediments in the channel and the smooth flat, and coarse (median phi about 2), and well sorted (sorting about 1) sediments in the shoreline flat and the irregular slope. Among mainstem hydrologic divisions, an average sediment from the river and the estuary division is coarser and more variable than an average sediment from the transition division. Substantial concentrations of total carbon, total nitrogen, and total phosphorus, and limited amounts of inorganic carbon, ammonia nitrogen and nitrite plus nitrate nitrogen occur in tidal Potomac sediments. An average tidal Potomac sediment sample weighing 1 kilogram contains about 21,000 milligrams of total carbon, 2,400 milligrams of total nitrogen, 1,200 milligrams of total phosphorus, 600 milligrams of inorganic carbon, 170 milligrams of ammonia nitrogen, and 2 milligrams of nitrite plus nitrate nitrogen. Total carbon, nitrogen, and phosphorus have an average ratio by weight of 18:2:1 and an average ratio by atoms of 94:8:1. Nutrient concentrations and nutrient ratios have large ranges and standard deviations. Nutrient concentrations usually are closely related to particle size; large concentrations are characteristic of fine sediments in the channel and the smooth flat, and small concentrations are typical of coarse sediments in the shoreline flat and the irregular slope. Concentrations typically decrease from the river division to the estuary division. Mainstem and tributaries show no statistically significant difference in mean particle-size measures or mean nutrient concentrations. Tributaries do not contribute large quantities of sediment with diverse texture or nutrient content to the Potomac mainstem. Particle-size measures and nutrient concentrations in the mainstem are significantly related to hydrologic divisions and geomorphic units; that is, particle size and nutrients vary significantly along and across the Potomac mainstem. Lateral variations in particle size and nutrient content are more pronounced and contribute more to significant relations than longitudinal variations contribute. The mean values for the median particle size and for the percentage of sand indicate significant variations among hydrologic divisions for samples from a geomorphic unit, and among geomorphic units, for samples from a hydrologic division. Sediments of channels and smooth flats in the river division commonly are coarser than sediments of channels and smooth flats in the transition and the estuary divisions. Shoreline flats in the estuary division are coarser than shoreline flats in the river division. Shoreline flats and irregular slopes in each hydrologic division generally are significantly coarser than channels and smooth flats. Relations between particle-size measures and geomorphic units show progressively larger cor

Water Supply Paper↗
USGS2010

Relating large-scale climate variability to local species abundance: ENSO forcing and shrimp in Breton Sound, Louisiana, USA

Climate creates environmental constraints (filters) that affect the abundance and distribution of species. In estuaries, these constraints often result from variability in water flow properties and environmental conditions (i.e. water flow, salinity, water temperature) and can have significant effects on the abundance and distribution of commercially important nekton species. We investigated links between large-scale climate variability and juvenile brown shrimp Farfantepenaeus aztecus abundance in Breton Sound estuary, Louisiana (USA). Our goals were to (1) determine if a teleconnection exists between local juvenile brown shrimp abundance and the El Niño Southern Oscillation (ENSO) and (2) relate that linkage to environmental constraints that may affect juvenile brown shrimp recruitment to, and survival in, the estuary. Our results identified a teleconnection between winter ENSO conditions and juvenile brown shrimp abundance in Breton Sound estuary the following spring. The physical connection results from the impact of ENSO on winter weather conditions in Breton Sound (air pressure, temperature, and precipitation). Juvenile brown shrimp abundance effects lagged ENSO by 3 mo: lower than average abundances of juvenile brown shrimp were caught in springs following winter El Niño events, and higher than average abundances of brown shrimp were caught in springs following La Niña winters. Salinity was the dominant ENSO-forced environmental filter for juvenile brown shrimp. Spring salinity was cumulatively forced by winter river discharge, winter wind forcing, and spring precipitation. Thus, predicting brown shrimp abundance requires incorporating climate variability into models.

Climate Research↗
USGS2014

Phytoplankton primary production in the world's estuarine-coastal ecosystems

Estuaries are biogeochemical hot spots because they receive large inputs of nutrients and organic carbon from land and oceans to support high rates of metabolism and primary production. We synthesize published rates of annual phytoplankton primary production (APPP) in marine ecosystems influenced by connectivity to land – estuaries, bays, lagoons, fjords and inland seas. Review of the scientific literature produced a compilation of 1148 values of APPP derived from monthly incubation assays to measure carbon assimilation or oxygen production. The median value of median APPP measurements in 131 ecosystems is 185 and the mean is 252 g C m −2 yr −1 , but the range is large: from −105 (net pelagic production in the Scheldt Estuary) to 1890 g C m −2 yr −1 (net phytoplankton production in Tamagawa Estuary). APPP varies up to 10-fold within ecosystems and 5-fold from year to year (but we only found eight APPP series longer than a decade so our knowledge of decadal-scale variability is limited). We use studies of individual places to build a conceptual model that integrates the mechanisms generating this large variability: nutrient supply, light limitation by turbidity, grazing by consumers, and physical processes (river inflow, ocean exchange, and inputs of heat, light and wind energy). We consider method as another source of variability because the compilation includes values derived from widely differing protocols. A simulation model shows that different methods reported in the literature can yield up to 3-fold variability depending on incubation protocols and methods for integrating measured rates over time and depth. Although attempts have been made to upscale measures of estuarine-coastal APPP, the empirical record is inadequate for yielding reliable global estimates. The record is deficient in three ways. First, it is highly biased by the large number of measurements made in northern Europe (particularly the Baltic region) and North America. Of the 1148 reported values of APPP, 958 come from sites between 30 and 60° N; we found only 36 for sites south of 20° N. Second, of the 131 ecosystems where APPP has been reported, 37% are based on measurements at only one location during 1 year. The accuracy of these values is unknown but probably low, given the large interannual and spatial variability within ecosystems. Finally, global assessments are confounded by measurements that are not intercomparable because they were made with different methods. Phytoplankton primary production along the continental margins is tightly linked to variability of water quality, biogeochemical processes including ocean–atmosphere CO 2 exchange, and production at higher trophic levels including species we harvest as food. The empirical record has deficiencies that preclude reliable global assessment of this key Earth system process. We face two grand challenges to resolve these deficiencies: (1) organize and fund an international effort to use a common method and measure APPP regularly across a network of coastal sites that are globally representative and sustained over time, and (2) integrate data into a unifying model to explain the wide range of variability across ecosystems and to project responses of APPP to regional manifestations of global change as it continues to unfold.

Biogeosciences↗
USGS1977

Impact of estuarine pollution on birds

Pollution of estuaries affects bird populations indirectly through changes in habitat and food supply. The multi-factor pollution of Chesapeake Bay has resulted in diminution of submerged aquatic plants and consequent change in food habits of the canvasback duck. Although dredge-spoil operations can improve wildlife habitat, they often result in its demise. Pollution of estuaries also affects birds directly, through chemical toxication, which may result in outright mortality or in reproductive impairment. Lead from industrial sources and roadways enters the estuaries and is accumulated in tissues of birds. Lead pellets deposited in estuaries as a result of hunting are consumed by ducks with sufficient frequency .to result m large annual die-offs from lead poisoning. Fish in certain areas, usually near industrial sources, may contain levels of mercury high enough to be hazardous to birds that consume them. Other heavy metals are present in estuarine birds, but their significance is poorly known. Oil exerts lethal or sublethal effects on birds by oiling their feathers, oiling eggs and young by contaminated parents, and by ingestion of oil-contaminated food. Organochlorine chemicals, of both agricultural and industrial origin, travel through the food chains and reach harmful levels in susceptible species of birds in certain estuarine ecosystems. Both outright mortality and reproductive impairment have occurred.

Book chapter↗
USGS1979

Seasonal occurrence and distribution of submerged aquatic macrophytes in the tidal Potomac River

A systematic survey was conducted in the Tidal Potomac River in 1978 to determine the presence, abundance, and phenology of submersed aquatic macrophytes. The survey covered 81.5 km of main river and 59.3 km of tributary on the Maryland shore. Four regions were selected for the study: (1) Piscataway - Mattawoman Creek region (fresh-tidal river), (2) Nanjemoy Creek-Port Tobacco River region (transition zone), (3) Wicomico River region (estuary), and (4) St. Marys River region (estuary). The Wicomico River region was subdivided into fresh tidal river, transition zone and estuary for purposes of date analysis. Data were gathered by sampling each 15 m along transects running perpendicular to shore for a maximum distance of 300 m. Modified oyster tongs were used to sample both plants and benthic soils from an outboard boat. A total of 131 transects were established with a total of approximately 3500 grabs being taken per sampling period. Sampling was initiated in the spring and repeated in the summer and fall. Highest plant diversity and productivity were measured in the transition zone extending from Lower Cedar Point to beyond Maryland Point, a distance of approximately 30 km, and in the transition zone of the Wicomico River above Chaptico Bay. Fresh tidal areas were devoid of plants. The estuary had a sparse growth of horned pondweed (Zannichellia palustris) and widgeon grass (Ruppia maritima) in the spring: horned pondweed was not found in summer or fall. Redhead grass (Potomageton perfoliatus) was the most abundant pondweed; it matured in early summer and died back in mid-to-late summer. Wild celery (Vallisneria americana) and widgeon grass matured in early-to-late fall and were the most abundant plants during that period. Data analysis is being finalized and a publication is in preparation. This research will be continued over the next several seasons as part of the long term USGS effort on the Potomac

Book chapter↗
USGS1985

Environmental systems and management activities on the Kennedy Space Center, Merritt Island, Florida: results of a modeling workshop

In the early 1960's, the National Aeronautics and Space Administration (NASA) began purchasing 140,000 acres on Merritt Island, Florida, in order to develop a center for space exploration. Most of this land was acquired to provide a safety and security buffer around NASA facilities. NASA, as the managing agency for the Kennedy Space Center (KSC), is responsible for preventing or controlling environmental pollution from the Federal facilities and activities at the Space Center and is committed to use all practicable means to protect and enhance the quality of the surrounding environment. The Merritt Island National Wildlife Refuge was established in 1963 when management authority for undeveloped lands at KSC was transferred to the U.S. Fish and Wildlife Service. In addition to manage for 11 Federally-listed threatened and endangered species and other resident and migratory fish and wildlife populations, the Refuge has comanagement responsibility for 19,000 acres of mosquito control impoundments and 2,500 acres of citrus groves. The Canaveral National Seashore was developed in 1975 when management of a portion of the coastal lands was transferred from NASA to the National Park Service. This multiagency jurisdiction on Merritt Island has resulted in a complex management environment. The modeling workshop described in this report was conducted May 21-25, 1984, at the Kennedy Space Center to: (1) enhance communication among the agencies with management responsibilities on Merritt Island; (2) integrate available information concerning the development, management, and ecology of Merritt Island; and (3) identify key research and monitoring needs associated with the management and use of the island's resources. The workshop was structured around the formulation of a model that would simulate primary management and use activities on Merritt Island and their effects on upland, impoundment, and estuarine vegetation and associated wildlife. The simulation model is composed of four connected submodels. The Uplands submodel calculates changes in acres and structural components of vegetation communities resulting from succession, fire, facilities development, and shuttle launch depositions, as well as the quantity and quality of surface runoff and aquifer input to an impoundment and an estuary. The Impoundment submodel next determines water quality and quantity and changes in vegetation resulting from water level manipulation and prescribed burning. The Estuary submodel than determines water quality parameters and acres of seagrass beds. Finally, the Wildlife submodel calculates habitat suitability indices for key species of interest, based on vegetation conditions in the uplands and impoundments and on several hydrologic parameters. The model represents a hypothetical management unit with 2,500 acres of uplands, a 600-acre impoundment, and a 1,500-acre section of estuary. Two management scenarios were run to analyze model behavior. The scenarios differ in the frequency of shuttle launches and prescribed burning, the extent of facilities development, the amount of land disposed waste material applied, and the nature and timing of impoundment water level control. Early in a model development project, the process of building the model is usually of greater benefit than the model itself. The model building process stimulates interaction among agencies, assists in integrating existing information, and helps identify research needs. These benefits usually accrue even in the absence of real predictive power in the resulting model. Open communication occurs among the Federal, State, and local agencies involved with activities on Merritt Island and the agencies have a cooperative working relationship. The workshop provided an opportunity for all of these agencies to meet at one time and have focused discussions on the key environmental and multiagency resource management issues. The workshop framework helped to integrate information and assumptions from a number of disciplines and agencies. This integration occurred in the computer simulation model and among workshop participants as submodel linkages were developed and scenario results discussed. A number of research needs were identified at the workshop during the model building and testing exercises and associated discussions. These needs were based on the informed judgement of researchers and managers familiar with Merritt Island or similar areas, rather than on a comprehensive literature review of sensitivity analysis of the preliminary model developed at the workshop. Some of the needs can be addressed by interpreting the results of completed studies from similar geographic areas as they relate to Merritt Island, while other will require additional research studies on Merritt Island. Major research needs associated with the Upland submodel include behavior of the near-surface aquifer, factors limiting slash pine regeneration, frequency and effects of natural fire on various cover types, cumulative effects of shuttle launches, and fate in upland soils of nitrogen and phosphorous from land applied waste material. Key Impoundment submodel needs include documentation of vegetation changes in response to altered water depth, salinity, and nutrient concentrations and better specification of the functional characteristics of impoundments as chemical filters. Important information gaps identified in the Estuary submodel include a more complete analysis of factors contributing to phytoplankton abundance, evaluation of sources of turbidity other than phytoplankton, and identification and quantification of factors limiting seagrass distribution. Primary research needs associated with the Wildlife submodel include a survey of breeding habitat, production data, and harvest data for mottled ducks; data on the emigration and immigration of juvenile mullet (and other transient fish) in the impoundment; the contribution of various seagrasses to habitat requirements of sea trout; and the effects of dissolved oxygen on survival of juvenile sea trout. Ideally, the modeling workshop process is iterative in nature. Periods between workshops are used for research, data collection, and model refinement. Each workshop integrates information collected since the last workshop and produces a more credible model that is more useful in evaluating management alternatives. Participants felt that continued application of this process would help provide ongoing integration and communication among agencies and would allow each agency's planning and management activities to be viewed within the context of an overall assessment.

Report↗
USGS2014

Snake River fall Chinook salmon life history investigations, 1/1/2012 - 12/31/2012: Annual report 2002-032-00

Executive Summary a. Fish Population RM&E This annual report describes the data collected and analyses conducted during calendar years 2012-2013 by staff of project 20023200. The USGS contributed only to the predation research and reservoir invertebrate work described in this report and the presentation of their results is consistent with USGS policy guidelines. The USGS is not responsible for the content provided by other contributing authors. Any use of trade, firm, or product names is for descriptive purposes only and does not imply endorsement by the U.S. Government. The main goal of this project is to better understand juvenile Snake River fall Chinook salmon life history diversity and the factors that influence it. This is called for in RPA 55.4 “Investigate key characteristics of Snake River fall Chinook salmon early life history.” We 3 investigated the importance of estuary entry and rearing to various Snake River fall Chinook salmon life histories. Otoliths were used to examine differences in estuary use between subyearlings and yearlings, and to determine natal habitats, rearing habitats, and overwintering habitat for returning adults. Estuary growth was best explained by estuary residence time and natal location. b. Predation and Invasive Species Management RM&E We investigated the extent of smallmouth bass predation on juvenile fall Chinook salmon in Lower Granite Reservoir as called for in the Fish and Wildlife Program, “The federal action agencies should work cooperatively with NOAA Fisheries, states, tribes, and the Council to review, evaluate, develop, and implement strategies to reduce non-native piscivorous predation on salmon and steelhead, especially by smallmouth bass, channel catfish, and walleye” (Page 52). Smallmouth bass stomach contents were collected and analyzed for the presence of juvenile salmon. Smallmouth bass abundance was estimated with mark-recapture techniques, and salmon consumption by bass was expanded based on bass abundance to determine the annual loss of juvenile fall Chinook salmon for the study period and area. The estimated loss of juvenile fall Chinook salmon to predation in Lower Granite Reservoir exceeded 109,000 fish in 2012. This information could be used to adaptively formulate better hatchery release strategies to reduce the effects of predation. Obtaining better estimates of smallmouth bass abundance and distribution in future years would reduce the uncertainty of estimates. This study will be completed by 2017. We also examined the effects of various field temperature scenarios resulting from summer flow augmentation on juvenile fall Chinook salmon susceptibility to smallmouth bass predation in laboratory trials. Predation susceptibility of juvenile salmon acclimated at cool temperatures (10°C) was highest when exposed to predators at 24°C. These results indicate that predation susceptibility may be higher when a relatively large temperature difference exists between the Clearwater and Snake rivers; that is, when cool water flow augmentation occurs in summer. Finally, we examined the role of different invasive invertebrates in lower Snake River reservoir food webs that are food, or competitors for food, for juvenile fall Chinook salmon. The Siberian prawn, a relatively new invader, is relatively abundant but its role on the food web is largely unexplored. Prawns are successfully reproducing and their diet is 81% Neomysis (an invasive opossum shrimp) which is heavily used at times by juvenile salmon for food. Neomysis has become very abundant in lower Snake River reservoirs in recent years and may be a profitable food item for many fish species.

Oregon, Washington↗
USGS1980

Lateral trends and vertical sequences in estuarine sediments, Willapa Bay, Washington

Willapa Bay is a sizable estuary on the southern coast of Washington- Relatively unmodified in a geologic sense by human activity the bay provides an excellent example of modern depositional facies in an estuarine setting. Studies of these deposits indicate that consistent lateral trends exist in sediment texture and sedimentary structures. The texture changes from sandy at the mouth of the bay to muddy in its upper parts. In any part of the bay , sediment is coarsest in the channel bottoms, where lag deposits accumulate. The sediment tends to fine in an upslope direction and is finest in supratidal flat deposits of silt and clay. The nature of sedimentary structures depends on the combination of physical and biological processes and sediment textures. Bedforms exist wherever the bed is sandy. In the main tidal channels sandwaves and dunes up to 4 meters high occur. In tributary channels and at the margins of the main channel, at shallower depths and under less intense currents , the structures are generally less than a meter high. Current ripples occur in t he sandy bed of all of the tidal channels and in runoff channels cross the tidal flat. Symmetric long-crested ripples are produced by wave action over the sandy intertidal flat. Internal structures in the bay's sediment depend not only on the nature of the bedform but also on the rate of bioturbation relative to physical processes. Under fields of large sandwaves or dunes, medium- to large-scale tabular and trough crossbedding predominates. This crossbedding generally is unidirectional, reflecting the locally dominant current (ebb or flood). Ripple bedding predominates elsewhere in sandy sediment within the channels. Where sand transport is diminished, as on the floor of the upper tributary channels, bioturbation exceeds the rate of production of physical structures and bedding is destroyed. The depositional banks in such areas tend to be sites of rapid sediment accumulation and bedding in the form of interlayered sand (commonly ripple bedded) and mud persists. On intertidal flats the sediment accumulates slowly and bioturbation erases nearly all physical structures. Bedding is preserved only where deposition is locally rapid , as in topographic depressions or on the depositional banks of runoff channels, or where faunal activity is inhibited, as beneath mounds of blue-green algae. The rate of sedimentation is slower still on the supratidal flats, but the general paucity of faunal activity allows the preservation of thin alternations of fine sand , silt or clay. The lateral migration of the tidal channels produces vertical sequences in which topographically higher facies are superposed on one another. Near the mouth of the estuary the upward sequence: lag deposit — crossbedded sand — ripple or planar-bedded sand is typical. The crossbedding shows a general upward decrease in thickness and a progression from trough to tabular units. In the main tidal channel - in the central estuary and in sandy tributary channels, the typical vertical sequence resembles that near the mouth , with the exception that the sequence is capped by bioturbated sandy or muddy tide flat deposits. In the upper estuary , where muddy sediment predominates, a typical sequence shows the progression-. bioturbated lag deposit — gently dipping interlaminated sand and mud layers of the accretionary bank — bioturbated mud flat deposits — thinly laminated fine supratidal deposits.

Oregon, Washington↗
USGS2018

Wetland stratigraphic evidence for variable megathrust earthquake rupture modes at the Cascadia subduction zone

Although widespread agreement that the Cascadia subduction zone produces great earthquakes of magnitude 8 to 9 was reached decades ago, debate continues about the rupture lengths, magnitudes, and frequency of megathrust earthquakes recorded by wetland stratigraphy fringing Cascadia’s estuaries. Correlation of such coastal earthquake evidence along the subduction zone has largely relied on relative position in a stratigraphic sequence and maximum-limiting 14C ages with errors of decades to hundreds of years. Offshore, a 10,000-year record of turbidites in marine cores is interpreted as an archive of strong shaking from great earthquakes, with an average frequency of about 500 years in northern Cascadia versus 200-300 years in southern Oregon and northern California. Onshore, fewer events marked by sharp (<3 mm) peat-mud (mud-over-peat) contacts in tidal wetland stratigraphic sequences have been widely inferred to record sudden relative sea-level rise due to coseismic subsidence during megathrust earthquakes: 4-7 sharp subsidence contacts in 3500 years at estuaries in northern Oregon and southern Washington (500-800 year average recurrence), and 9-12 sharp subsidence contacts in over 6000 years in sequences in central and southern Oregon (500-900 year average recurrence). Improved understanding of the onshore and offshore records is critical to the assessment of earthquake hazard in western North America and of tsunami hazard in the Pacific basin. However, because dating the turbidite record is inherently much less precise than are age models for subsidence events in the most thoroughly studied tidal wetland sequences, accurate reconstruction of the times of Cascadia’s great earthquakes depends on the ages from the onshore record. Although methods to reduce uncertainty in the limits of resolution of tidal stratigraphy for recording earthquakes of a particular magnitude, and ways to distinguish earthquake subsidence stratigraphic contacts from non-seismic contacts, have been discussed for decades (e.g., Nelson, 1992; Atwater, 1992; Darienzo et al., 1994; Nelson et al., 1996a; Atwater and Hemphill-Haley, 1997; Witter et al., 2001; Kelsey et al., 2002; Nelson et al., 2006; Graehl et al., 2014; Milker et al., 2016), consensus about the threshold of resolution (minimum identifiable evidence of an earthquake) of tidal stratigraphy and, therefore, the completeness of Cascadia’s coastal record of great earthquakes, remains elusive. Although the most distinct, widespread contacts likely record close to a meter of coastal subsidence during the greatest megathrust earthquakes (e.g., M8.8-M9), other contacts may record <0.5 m of subsidence onshore of patches of low stress release on the megathrust during great earthquakes, during lesser megathrust earthquakes (e.g., M8.2-8.6), or from localized subsidence near upper-plate faults that slip during or independently of megathrust earthquakes (Nelson et al., 1996b; Wang et al., 2013; Kemp et al., 2018). At the Siuslaw River estuary in central Oregon (lat. 43.97°) a stratigraphy of 9-12 peat-mud contacts, similar to those described from many Cascadia estuaries, may record a greater number of earthquakes during the past 2000 years than at any other of the tens of tidal wetland sites to the north and south. Here, as well as at many tens of other Cascadia tidal wetland sites, peat-mud contacts mark the tops of couplets of tidal flat and low marsh mud gradually shoaling upward into middle and high marsh peat. Along core transects across an 800-m-wide, island marsh in the Siuslaw River, we traced the 9 most continuous of 12-15 peaty beds dating from the past 2000 years for 250-500 m, but we had difficulty correlating the 3-6 intervening beds >50-100 m. We attribute the sharper, more extensive upper contacts on peaty beds—two capped by sandy beds probably deposited by tsunamis—to sudden coseismic subsidence of middle and high marshes, but origins for other upper and lower contacts boundi

Conference Paper↗
USGS2006

Fulfilling a paradoxical mandate: can the Environmental Water Account ensure the reliability of freshwater exports from the Sacramento-San Joaquin Delta and simultaneously protect delta smelt (Hypomesus transpacificus) from excessive entrainment?

The San Francisco Estuary (SFE) is often defined by its extremes. It is considered one of the most urbanized estuaries in the world (Conomos 1979, Nichols et al. 1986), and one of the most invaded estuaries in the United States, with hundreds of aquatic nonindigenous species established throughout the system (Cohen and Carlton 1995, Dill and Cordone 1997, Kimmerer and Orsi 1996). It is also one of the most managed estuaries, particularly in relation to freshwater inflow, water circulation, and water quality (Jassby and Powell 1994, CSWRCB 1995, Arthur et al. 1996, Kimmerer 2002). Despite this high level of disturbance, the SFE is one of the most valuable natural resources in the western United States (CALFED 2000). The SFE provides important habitat for numerous native plant and animal species, many of special concern, as well as several species with sport and commercial value (CALFED 2000). Conserving and restoring estuarine habitat and natural resources is a pressing and complex challenge for the responsible government agencies because human water needs continue to increase in concert with continuing urbanization of the watershed.

Interagency Ecological Program Newsletter↗
USGS2021

Process-based models and studies of coastal change to inform habitat restoration and climate change adaptation

Puget Sound salmon and estuary recovery strategies identify tens of thousands of acres of floodplain and estuary habitat restoration needed to re-establish ecosystem functions lost or degraded from western land use (Simenstad et al., 2011); the extent for nearshore habitat remains uncertain. Sediment is critical for shaping the structure and functions of these ecosystems and the success of many habitat recovery strategies. This is particularly important in the Pacific Northwest, where high sediment flux through the coastal zone makes it a more dynamic ecosystem driver than other regions where estuary restoration guidance has been developed and especially for extensive marshes and floodplains that have subsided due to lost sediment delivery from placement of flow control (flood protection) structures (Grossman et al., 2020). Fluvial sediment delivery to Puget Sound is expected to greatly increase in many systems under projected climate change (Lee et al., 2016), requiring better models and tools to evaluate complex ecosystem responses. Guidance for estuary habitat recovery (e.g., Clancy et al., 2009) rests on a paradigm of restoring historic habitats and connectivity by simply removing or lowering levees assuming sediment delivery and accumulation will occur. Outcomes of several restoration projects and studies show that restoring “opportunity” for sediment delivery may not be enough. Improved knowledge and predictive models of land-use and climate change effects on sediment budgets, sediment properties, and coastal change can refine restoration guidance to evaluate quantitative expectations for sediment flux, composition, accumulation, and timing critical to achieving more effective recovery, resilience, and community support.

Conference Paper↗
USGS2002

Microphytobenthos potential productivity estimated in three tidal embayments of the San Francisco Bay system

In this paper we describe a three-step procedure to infer the spatial heterogeneity in microphytobenthos primary productivity at the scale of tidal estuaries and embayments. The first step involves local measurement of the carbon assimilation rate of benthic microalgae to determine the parameters of the photosynthesis-irradiance (P-E) curves (using non-linear optimization methods). In the next step, a resampling technique is used to rebuild pseudo-sampling distributions of the local productivity estimates; these provide error estimates for determining the significance level of differences between sites. The third step combines the previous results with deterministic models of tidal elevation and solar irradiance to compute mean and variance of the daily areal primary productivity over an entire intertidal mudflat area within each embayment. This scheme was applied on three different intertidal mudflat regions of the San Francisco Bay estuary during autumn 1998. Microphytobenthos productivity exhibits strong (ca. 3-fold) significant differences among the major sub-basins of San Francisco Bay. This spatial heterogeneity is attributed to two main causes: significant differences in the photosynthetic competence (P-E parameters) of the microphytobenthos in the different sub-basins, and spatial differences in the phase shifts between the tidal and solar cycles controlling the exposure of intertidal areas to sunlight. The procedure is general and can be used in other estuaries to assess the magnitude and patterns of spatial variability of microphytobenthos productivity at the level of the ecosystems.

California↗
USGS2003

Effects of hurricane floyd inland flooding, September–October 1999, on tributaries to Pamlico Sound, North Carolina

Hurricane Floyd in September 1999 caused disastrous flooding from South Carolina to Massachusetts in the United States, with particularly severe and prolonged flooding in eastern North Carolina resulting in record flood-flow loadings of freshwater and contaminants to Pamlico Sound, North Carolina. The inland flooding, water quality, and loadings to Pamlico Sound were determined as part of a multi-agency response to the floods and in an effort to understand the effects of the floods on the greater Pamlico Sound Basin. All major river basins draining to Pamlico Sound experienced floods at the 500-yr recurrence level. The volume of flood waters entering Pamlico Sound during September–October 1999 was estimated to be equivalent to about 95% of the volume of Pamlico Sound, meaning that flood waters could have essentially displaced most of the water present in Pamlico Sound. Nitrogen and phosphorus loads to the Pamlico River estuary and Neuse River estuary, the two principal estuaries draining to Pamlico Sound, in a 36-d period during the flooding were between 50–90% of the long term average annual loads. Pesticide concentrations in flood waters were surprisingly high, given the amount of dilution produced by the floodwaters.

North Carolina↗
USGS2020

Nutrient status of San Francisco Bay and its management implications

Nutrient enrichment has degraded many of the world’s estuaries by amplifying algal production, leading to hypoxia/anoxia, loss of vascular plants and fish/shellfish habitat, and expansion of harmful blooms (HABs). Policies to protect coastal waters from the effects of nutrient enrichment require information to determine if a water body is impaired by nutrients and if regulatory actions are required. We compiled information to inform these decisions for San Francisco Bay (SFB), an urban estuary where the best path toward nutrient management is not yet clear. Our results show that SFB has high nutrient loadings, primarily from municipal wastewater; there is potential for high algal production, but that production is not fully realized; and SFB is not impaired by hypoxia or recurrent HABs. However, our assessment includes reasons for concern: nitrogen and phosphorus concentrations higher than those in other estuaries impaired by nutrient pollution, chronic presences of multiple algal toxins, a recent increase of primary production, and projected future hydroclimatic conditions that could increase the magnitude and frequency of algal blooms. Policymakers thus face the challenge of determining the appropriate protective policy for SFB. We identify three crucial next steps for meeting this challenge: (1) new research to determine if algal toxins can be reduced through nutrient management, (2) establish management goals as numeric targets, and (3) determine the magnitude of nutrient load reduction required to meet those targets. Our case study illustrates how scientific information can be acquired and communicated to inform policymakers about the status of nutrient pollution, its risks, and strategies for minimizing those risks.

California↗
USGS2020

Trapping of suspended sediment by submerged aquatic vegetation in a tidal freshwater region: Field observations and long-term trends

Widespread invasion by non-native, submerged aquatic vegetation (SAV) may modify the sediment budget of an estuary, reducing the availability of inorganic sediment required by marshes to maintain their position in the tidal frame. The instantaneous trapping rate of suspended sediment in SAV patches in an estuary has not previously been quantified via field observations. In this study, flows of water and suspended sediment through patches of invasive SAV were measured at three tidally forced, freshwater sites, all located within the Sacramento-San Joaquin Delta in California. An acoustic Doppler current profiler deployed from a roving vessel provided velocity and backscatter data used to quantify fluxes of both water and suspended sediment. Sediment trapping efficiency, defined as instantaneous net trapped flux divided by incident flux, was positive in 24 of 29 cases, averaging + 5%. Coupled with 3 years of measured sediment flux data at one site, this suggests that trapping averages 3.7 kg m −2 year −1 . This estimate compares favorably with the mean mass accumulation rate of 3.8 kg m −2 year −1 estimated from dated sediment cores collected at the study sites. Long-term measurements made upstream reveal a strong negative trend (− 1.8% year −1 ) in suspended sediment concentration, and intra-annual changes in both suspended sediment concentration and percent fines. The large footprint and high spatial density of invasive SAV coupled with declining sediment supply are diminishing downstream suspended sediment concentrations, potentially reducing the resiliency of marshes in the Delta and lower estuary to future sea-level rise.

California↗
USGS2020

Production of the copepod Pseudodiaptomus forbesi is not enhanced by ingestion of the diatom Aulacoseira granulata during a bloom

In 2016, a massive bloom of the chain-forming diatom Aulacoseira granulata occurred in the upper San Francisco Estuary, California, with chlorophyll concentrations up to 75 μg Chl L −1 . In this study, quantitative PCR was used to investigate consumption of the bloom organism by the numerically dominant zooplankter Pseudodiaptomus forbesi (Copepoda: Calanoida) and to estimate the contribution of the bloom to egg production. Copepods were collected on four transects during May and June 2016; egg production rates were somewhat elevated above previous rates measured in the estuary. Ingestion of A. granulata was highest on the first sampling day, just after the peak of the bloom, ranging from 175 to 945 cells copepod −1 day −1 . One month later ingestion rates dropped to 0–130 cells copepod −1 day −1 , despite continued dominance of A. granulata in the plankton. Ingestion of A. granulata provided from 0 to 21% (median 1%) of the estimated daily carbon required for growth and reproduction of P. forbesi . Although the copepods probably obtained nutrition from a microbial food web stimulated by the bloom, monitoring data showed little demographic response to this bloom. Thus, a massive diatom bloom in an unproductive estuary provided only a minor stimulus through an abundant consumer to the pelagic food web.

California↗
USGS2022

Whole-ecosystem experiment illustrates short timescale hydrodynamic, light, and nutrient control of primary production in a terminal slough

Estuaries are among the most productive of aquatic ecosystems. Yet the collective understanding of patterns and drivers of primary production in estuaries is incomplete, in part due to complex hydrodynamics and multiple controlling factors that vary at a range of temporal and spatial scales. A whole-ecosystem experiment was conducted in a deep, pelagically dominated terminal channel of the Sacramento-San Joaquin Delta (California, USA) that seasonally appears to become nitrogen limited, to test whether adding calcium nitrate would stimulate primary productivity or increase phytoplankton density. Production did not respond consistently to fertilization, in part because nitrate and phytoplankton were dispersed away from the manipulated area within 1–3 days. Temporal and spatial patterns of gross primary production were more strongly related to stratification and light availability (i.e., turbidity) than nitrogen, highlighting the role of hydrodynamics in regulating system production. Similarly, chlorophyll was positively related not only to stratification but also to nitrogen—with a positive interaction—suggesting stratification may trigger nutrient limitation. The average rate of primary production (4.3 g O 2 m −2 d −1 ), metabolic N demand (0.023 mg N L −1 d −1 ), and ambient dissolved inorganic nitrogen concentration (0.03 mg N L −1 ) indicate that nitrogen can become limiting in time and space, especially during episodic stratification events when phytoplankton are isolated within the photic zone, or farther upstream where water clarity increases, dispersive flux decreases, and stratification is stronger and more frequent. The role of hydrodynamics in organizing habitat connectivity and regulating physical and chemical processes at multiple temporal and spatial scales is critical for determining resource availability and evaluating biogeochemical processes in estuaries.

California↗
USGS2023

Forecasting sea level rise-driven inundation in diked and tidally restricted coastal lowlands

Diked and drained coastal lowlands rely on hydraulic and protective infrastructure that may not function as designed in areas with relative sea-level rise. The slow and incremental loss of the hydraulic conditions required for a well-drained system make it difficult to identify if and when the flow structures no longer discharge enough water, especially in tidal settings where two-way flows occur through the dike. We developed and applied a hydraulic mass-balance model to quantify how water levels in the diked and tidally restricted coastal wetlands and water bodies dynamically respond to sea-level rise, specifically applied to the Herring River Estuary in MA, USA, from 2020 to 2100. Sensitivity testing of the model parameters indicated that primary outcomes were not sensitive to many of the chosen input values, though the terrestrial water input rate to the estuary and the flow coefficient for the hydraulic infrastructure were important. The relative importance of parameters, however, is expected to be site specific. We introduced a drainability metric that quantifies the net water volume drained over every tidal cycle to monitor and forecast how rising water levels on either side of the dike affected the net draining or impounding conditions of the system. Ensembles of model results across parameter and sea-level scenario uncertainties indicated that substantial impoundment of the Herring River Estuary was expected within ~ 20 years with the existing flow structures, a sluice and two flap gates. Simulations with up to three additional gates did not dampen this trend toward impoundment, suggesting that rising impounded water levels are likely even with major construction upgrades. Increasingly impounded diked coastal waterbodies present a hydrologic challenge with socioecological implications due to projected flooding and ecosystem impacts. Solutions to this challenge may be to allow coastal wetland restoration pathways or require substantial and recurring infrastructure improvement projects.

Massachusetts↗