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USGS2022

Coupling validation effort with in situ bioacoustic data improves estimating relative activity and occupancy for multiple species with cross-species misclassifications

The increasing complexity and pace of ecological change requires natural resource managers to consider entire species assemblages. Acoustic recording units (ARUs) require minimal cost and effort to deploy and inform relative activity, or encounter rates, for multiple species simultaneously. ARU-based surveys require post-processing of the recordings via software algorithms that assign a species label to each recording. The automated classification process can result in cross-species misidentifications that should be accounted for when employing statistical modelling for conservation decision-making. Using simulation and ARU-based detection counts from 17 bat species in British Columbia, Canada, we investigate three strategies for adjusting statistical inference for species misclassification: (a) ‘coupling’ ambiguous and unambiguous detections by validating a subset of survey events post-hoc, (b) using a calibration dataset on the software algorithm's (in)accuracy for species identification or (c) specifying informative Bayesian priors on classification probabilities. We explore the impact of different Bayesian prior specifications for the classification probabilities on posterior estimation. We then consider how the quantity of data validated post-hoc impacts model convergence and resulting inferences for bat species relative activity as related to nightly conditions and yearly site occupancy after accounting for site-level environmental variables. Coupled methods resulted in less bias and uncertainty when estimating relative activity and species classification probabilities relative to calibration approaches. We found that species that were difficult-to-detect and those that were often inaccurately identified by the software required more validation effort than more easily detected and/or identified species. Our results suggest that, when possible, acoustic surveys should rely on coupled validated detection information to account for false-positive detections, rather than uncoupled calibration datasets. However, if the assemblage of interest contains a large number of rarely detected or less prevalent species, an intractable amount of effort may be required, suggesting there are benefits to curating a calibration dataset that is representative of the observation process. Our findings provide insights into the practical challenges associated with statistical analyses of ARU data and possible analytical solutions to support reliable and cost-effective decision-making for wildlife conservation/management in the face of known sources of observation errors.

British Columbia↗

USGS2020

Sediment export and impacts associated with river delta channelization compound estuary vulnerability to sea-level rise, Skagit River Delta, Washington, USA

Improved understanding of the budget and retention of sediment in river deltas is becoming increasingly important to mitigate and plan for impacts expected with sea level rise. In this study, analyses of historical bathymetric change, sediment core stratigraphy, and modeling are used to evaluate the sediment budget and environmental response of the largest river delta in the U.S. Pacific Northwest to western land-use change beginning in ~1850. An estimated 142±28 M m 3 of sediment accumulated offshore of the emergent Skagit River delta in Washington State between 1890 and 2014 and ~68% of which was found in sand deposits. The fraction of sediment retained in sand reservoirs represents 83% of the expected fluvial sand delivery over this time suggesting their potential utility to evaluate the relative contribution of different land uses to sediment runoff through time. A significantly higher ratio of sand retention to delivery during the period 1890–1939 coincided with extensive watershed denudation (clear-cut logging) and channel dredging, relative to the period 1940–2014, which was characterized by improved forest practices and sediment management to protect endangered species but also more extensive river channelization. Retention in the delta foreset of 78% of the sand delivered by the river between 1890 and 1939 was associated with extensive sediment bypassing and delta progradation that is shown to be 5–10x higher than rates over the Holocene. Comparable offshore sand retention over time and higher nearshore retention subsequent to 1940 after normalizing for the assumed reduction in sediment runoff with improved forest practices, suggests that channelization has continued to influence sediment export at a magnitude equivalent to the effects of early logging. Adverse impacts of the bypassing sediment regime to natural hazards risk and ecosystem management concerns are discussed, including the role of the lost sediment as a resource to mitigate subsiding coastal lands vulnerable to flood impacts. The sediment budget and coastal change analyses provide a framework for evaluating opportunities to achieve greater resilience across several sectors of coastal land use important in low-lying deltas worldwide.

Washington↗

USGS2008

A simulation/optimization model for groundwater resources management in the Afram Plains area, Ghana

A groundwater flow simulation model was developed using available hydrogeo logical data to A groundwater flow simulation model was developed using available hydrogeological data to describe groundwater flow in the Afram Plains area. A nonlinear optimization model was then developed and solved for the management of groundwater resources to meet irrigation and household needs. The objective was to maximize groundwater extraction for irrigation activities from the shallow aquifers of the southern Voltaian Sedimentary Basin that underly the area This would improve food security, raise the standard of living and ultimately alleviate poverty in the Afram Plains. The calibrated flow model is in tandem with the general hydrochemical evolution of groundwater in the area and fits the observed data with about a 98% degree of confidence. Groundwater resources may not be the limiting factor in the development of irrigated agriculture. Groundwater has tremendous potential to meet current and future irrigation needs. It was determined from this study that profit from maize irrigation in the Afram Plains area could rise from US$301, 000 in 2007 to over US$3.5 million by the end of the last management period (2013) as irrigation practice is improved, and the economic strength to increase the acreage for irrigation improves. Even with these margins of profit, the drawdown constraint was not reached in any of the management periods. It is expected that rechargefrom the irrigation water would reclaim the lost hydraulic head. The single significant constraint was the amount of land area that could be developed for irrigation in the area. The profit obtained per unit cubic meter of water used also improved over the same management period.

Journal of Environmental Hydrology↗

USGS2019

Assessing potential effects of highway and urban runoff on receiving streams in total maximum daily load watersheds in Oregon using the stochastic empirical loading and dilution model

The Stochastic Empirical Loading and Dilution Model (SELDM) was developed by the U.S. Geological Survey (USGS) in cooperation with the Federal Highway Administration to simulate stormwater quality. To assess the effects of runoff, SELDM uses a stochastic mass-balance approach to estimate combinations of pre-storm streamflow, stormflow, highway runoff, event mean concentrations (EMCs) and stormwater constituent loads from a site of interest. In addition, SELDM can be used to assess the effects of stormwater Best Management Practices (BMPs), which are designed to mitigate the adverse effects of runoff into a waterbody. Adverse effects of stormwater on receiving waters are one of the greatest unsolved water-quality problems Nationwide. State DOTs, municipalities, Federal facilities, and private property owners who manage impervious surfaces need information about the potential magnitude of their contributions and the potential effectiveness of methods to mitigate the adverse effects of runoff. Because the efficacy of at-site controls are limited, information about the potential effectiveness of alternative strategies is needed. The USGS, in cooperation with the Oregon Department of Transportation (ODOT), conducted a study to research methods in which SELDM can be used to enhance the efficiency of ODOT’s stormwater program, support the development of a stormwater banking program, and meet environmental goals. Results can be used to develop a strategic, systems-level approach to stormwater management by considering entire watersheds instead of individual road crossings. Two watersheds, Bear Creek and Mill Creek, in western Oregon were selected for analysis. Within each watershed, seven road crossings were selected for demonstrating the utility of SELDM in nested basins. Precipitation statistics, pre-storm streamflow, runoff coefficients, and hydrograph recession factors were calculated for each location and used in SELDM to simulate flow, water-quality concentrations, and constituent loads in the upstream basin, from the highway (or developed area), and downstream from the road crossing. Three water-quality constituents were selected for modeling: suspended-sediment concentration (SSC), total phosphorus (TP), and total copper (TCu). Using water-quality transport curves, the relations between streamflow and SSC and between streamflow and TP were simulated. Concentrations of TCu were simulated by configuring a linear relation between SSC and TCu. A generic BMP was simulated using the median treatment statistics for flow reductions, hydrograph extensions, concentration reductions, and minimum irreducible concentrations from nine BMP categories with data from the 2012 International BMP database. Five simulation scenarios were modeled for demonstrative purposes. These simulations were used to evaluate potential effects of different watershed properties, water-quality inputs, and stormwater mitigation measures. Instream EMCs were compared to hypothetical water-quality criteria for suspended sediment, total phosphorus, and total copper to demonstrate the concept of water-quality risk analysis. For all five scenarios, it was assumed that highway runoff concentrations were independent of location or average annual daily traffic. These five scenarios are as follows: • Simulation Scenario 1—Natural Conditions (hereafter Simulation Scenario 1) represents conditions in an undeveloped watershed. This scenario demonstrates that the strategic placement of a hypothetical road crossing within a watershed could be used to avoid exceeding water-quality standards of TP and SSC, but that no location choice results in meeting TCu standards. Implementation of BMP had the most pronounced effects on downstream water-quality constituent EMCs at road crossings with the highest ratio of highway catchment area to upstream drainage area, but the largest effect of BMP treatment on mean annual load is based on highway catchment area alone. • Simulation Scenario 2—Current Conditions (hereafter Simulation Scenario 2) represents current watershed conditions, where all developed area upstream from the road crossing was modeled as a highway and combined with the undeveloped part of the upstream drainage area (scenario 2A) and where the output from scenario 2A is used for the upstream area (developed area and the undeveloped area), and where the road crossing is added as usual (scenario 2B). Scenario 2 results indicate that attaining water-quality standards is more difficult with upstream developed areas. Specific road-crossing sites can be selected to achieve the fewest water-quality exceedances per year, but water-quality targets are not met without BMP implementation, and in some instances are not achievable even with BMP implementation. Results from this scenario also serve to quantify the upper limit of constituent reduction if funding were available to implement BMPs to large areas of development, and to quantify how much area would need BMP implementation to achieve water-quality targets. • Simulation Scenario 3—Alternative Road Layouts (hereafter Simulation Scenario 3) was designed to assess the sensitivity of SELDM to various road layouts. In this scenario, different highway configurations were superimposed at one road crossing. Results indicate that downstream waterquality constituent EMCs did not exhibit much variation, but annual water-quality constituent loads varied considerably. • Simulation Scenario 4—Varying Road Width (hereafter Simulation Scenario 4) was designed to assess the sensitivity of SELDM to road width. Similar to scenario 3, the results indicate little variation in downstream water-quality constituent EMCs, but annual water-quality constituent loads increased in proportion to road width. • Simulation scenario 5—Changes to Impervious Area (hereafter Simulation Scenario 5) was designed to investigate the effects of changing amounts of imperviousness upstream from the road crossing. Results indicate that the downstream water-quality constituent EMCs are highly correlated with the percentage of impervious area upstream.

Oregon↗

USGS1987

Instream water use in the United States: water laws and methods for determining flow requirements

Water use generally is divided into two primary classes - offstream use and instream use. In offstream use, sometimes called out-of-stream or diversionary use, water is withdrawn (diverted) from a stream or aquifer and transported to the place of use. Examples are irrigated agriculture, municipal water supply, and industrial use. Each of these offstream uses, which decreases the volume of water available downstream from the point of diversion, is discussed in previous articles in this volume. Instream use, which generally does not diminish the flow downstream from its point of use, and its importance are described in this article. One of the earliest instream uses of water in the United States was to turn the water wheels that powered much of the Nation's industry in the 18th and 19th centuries. Although a small volume of water might have been diverted to a mill near streamside, that water usually was returned to the stream near the point of diversion and, thus, the flow was not diminished downstream from the mill. Over time, the generation of hydroelectric power replaced mill wheels as a means of converting water flow into energy. Since the 1920's, the generation of hydroelectric power increasingly has become a major instream use of water. By 1985, more than 3 billion acre-feet of water (3,050,000 million gallons per day) was used annually for hydropower generation (Solley and others, 1988, p. 45)-enough water to cover the State of Colorado to a depth of 51 feet. Navigation is another instream use with a long history. The Lewis and Clark expedition journals and many of Mark Twain's novels illustrate the extent to which the Nation originally depended on adequate streamfiows for basic transportation. Navigation in the 1980's is still considered to be an instream use; however, it often is based upon a stream system that has been modified greatly through channelization, diking, and construction of dams and locks. The present (1987) inland water navigation system in the conterminous United States consists of about 12,000 miles of maintained waterways, over which about 500 million tons of cargo is carried each year (U.S. Army Corps of Engineers, 1988, p. 16). Although not so widely practiced in recent years, streams have been used to dispose of raw waste products from homes, communities, and factories. This use has been discouraged by law and public policy because of public health concerns and the damage it causes to the environment. Beginning in the mid-1960's, other instream uses gained new prominence in the water-resources arena-the assertion of a legal right to a free-flowing stream for biological, recreational, and esthetic purposes. These uses themselves, however, are not new. Riverine habitat always has produced fish, and the beauty of flowing water always has evoked a strong sense of esthetic appreciation. What is new is the emerging legitimacy and awareness of these noneconomic uses under State and Federal laws and regulations. In the past, environmental uses of flowing water were ignored, for the most part, under a long-standing legal tradition that favored offstream uses and certain instream uses that had a strong economic basis. The history of instream-flow policy debate really concerns those recently recognized types of interim uses. Although the more transitional water uses have been protected by law, the recognition of other in stream uses has resulted in substantial changes in State water laws. Although methods for determining the volume of water needed for most traditional water uses are relatively straight-forward and well-established, methods for determining water requirements for the in stream uses have been developed only recently and are continuing to evolve. Water laws that have favored the more traditional water uses, the inherent nature of conflict between instream and offstream water uses, and the special kinds of technological and philosophical problems posed by the "newer" types of instream uses are described below. Water laws that have been passed to accommodate the more recently recognized instream uses are summarized.

Report↗

USGS2010

Assessment and management of ecological integrity: Chapter 12

Assessing and understanding the impacts of human activities on aquatic ecosystems has long been a focus of ecologists, water resources managers, and fisheries scientists. While traditional fisheries management focused on single-species approaches to enhance fish stocks, there is a growing emphasis on management approaches at community and ecosystem levels. Of course, as fisheries managers shift their attention from narrow (e.g., populations) to broad organizational scales (e.g., communities or ecosystems), ecological processes and management objectives become more complex. At the community level, fisheries managers may strive for a fish assemblage that is complex, persistent, and resilient to disturbance. Aquatic ecosystem level objectives may focus on management for habitat quality and ecological processes, such as nutrient dynamics, productivity, or trophic interactions, but a long-term goal of ecosystem management may be to maintain ecological integrity. However, human users and social, economic, and political demands of fisheries management often result in a reduction of ecological integrity in managed systems, and this conflict presents a principal challenge for the modern fisheries manager. The concepts of biotic integrity and ecological integrity are being applied in fisheries science, natural resource management, and environmental legislation, but explicit definitions of these terms are elusive. Biotic integrity of an ecosystem may be defined as the capability of supporting and maintaining an integrated, adaptive community of organisms having a species composition, diversity, and functional organization comparable to that of a natural habitat of the region (Karr and Dudley 1981). Following that, ecological integrity is the summation of chemical, physical, and biological integrity. Thus, the concept of ecological integrity extends beyond fish and represents a holistic approach for ecosystem management that is especially applicable to aquatic systems. The more general term, ecological condition, refers to the state of the physical, chemical, and biological characteristics of the environment and the processes and interactions that connect them. While the concept of ecological integrity may appear unambiguous, its assessment and practice are much less clear. Ecological integrity made its debut in the USA with the Clean Water Act (CWA) of 1972 (Federal Water Pollution Control Act, as amended through Public Law 107–303, November 27, 2002), which states only one objective, “to restore and maintain the chemical, physical, and biological integrity of the Nation’s waters.” This legislation compelled resource managers to focus on chemical pollution from point effluent sources, such as industrial and municipal outflows, as well as give attention to diffuse, chronic, and watershed effects on ecological integrity. Further, the CWA allowed pursuit of restoration programs in degraded water bodies and catalyzed the science and practice of restoration ecology. The term ecosystem health is often raised in discussions of ecological integrity. Perhaps it is natural to anthropomorphize our concern for personal health to ecosystems, so it becomes a useful metaphor for understanding the concept of ecological integrity. However, whether or not an ecosystem should be considered an entity, such as a superorganism, is a debate without end that began with early ecologists and continues today (Clements 1916; Suter 1993; Simon 1999a). Regardless, the ecosystem is indeed a natural unit with a level of organization and properties beyond the collection of those species that occupy it and presents the most appropriate spatial and organizational scale in which to assess and study ecological integrity. Streams and rivers serve as integrators of chemical, physical, and biological conditions across the landscape, and while the theory and practice associated with ecological integrity of aquatic systems is easily applied to flowing waters and is emphasized in this chapter, they are broadly applicable among all aquatic systems.

Book chapter↗

USGS2024

Local environmental conditions structured discrete fish assemblages in Arctic lagoons

Rapid changes in sea ice extent and changes in freshwater inputs from land are rapidly changing the nature of Arctic estuarine ecosystems. In the Beaufort Sea, these nearshore habitats are known for their high productivity and mix of marine resident and diadromous fishes that have great subsistence value for Indigenous communities. There is, however, a lack of information on the spatial variation among Arctic nearshore fish communities as related to environmental drivers. In summers of 2017–2019, we sampled fishes in four estuarine ecosystems to assess community composition and relate fish abundance to temperature, salinity, and wind conditions. We found fish communities were heterogeneous over larger spatial extents with rivers forming fresh estuarine plumes that supported diadromous species (e.g., broad whitefish Coregonus nasus ), while lagoons with reduced freshwater input and higher salinities were associated with marine species (e.g., saffron cod Eleginus gracilis ). West–East directional winds accounted for up to 66% of the community variation, indicating importance of the wind-driven balance between fresh and marine water masses. Salinity and temperature accounted for up to 54% and 37% of the variation among lagoon communities, respectively. Recent sea ice declines provide more opportunity for wind to influence oceanographic conditions and biological communities. Current subsistence practices, future commercial fishing opportunities, and on-going oil and gas activities benefit from a better understanding of current fish community distributions. This work provides important data on fish spatial distributions and community composition, providing a basis for fish community response to changing climatic conditions and anthropogenic use.

Polar Biology↗

USGS2002

Studying the effects of land use on sediment loads, Little Missouri National Grasslands, North Dakota

The Little Missouri National Grasslands in North Dakota were established in 1960 and are publicly owned lands administered by the U.S. Department of Agriculture (USDA) Forest Service. The grasslands are not solid blocks of National Forest Systems lands but are lands intermingled with other Federal, State, and privately-owned lands. The mixed-ownership pattern creates a unique environmental management arrangement within each grasslands area. The USDA Forest Service needs to determine how changes in land use affect loss of sediment from the grasslands, especially during periods of high runoff or after a grassland fire. Excessive sediment loss has the potential to destabilize hillslopes and channels by increasing runoff potential, by prohibiting natural revegetation, by changing animal habitation patterns, and by impacting areas farther downslope and downstream of affected areas. On October 31, 1999, two major grass-land fires occurred in the Little Missouri National Grasslands area. The Squaw Gap Fire affected 51,627 acres and the Rough Creek Fire affected 7,979 acres. Runoff caused substantial erosion when many road ditches and culverts were filled with sediment and some roads were washed out. In order to implement the best management practices within the Little Missouri National Grasslands, the USDA Forest Service will need sediment information related to land-use changes such as burned and unburned areas and grazed and ungrazed areas. The Little Missouri National Grasslands are located along the Little Missouri River in western North Dakota. The Grasslands are comprised of 1,028,000 acres predominantly in an area of rolling hills, sparsely covered buttes, coulees, woody draws, and badlands. Most of the area is used as rangeland; but, some of the area is cultivated or used for oil and gas development. The Grasslands have semiarid climate with short, warm summers and long, cold winters. The Grasslands receive an average annual precipitation of about 13 to 15 inches, which generally occurs from April through June. Runoff is produced by snowmelt during the spring or by rainfall over individual watersheds during the warmer months. Temperatures have ranged from about -30 degrees Fahrenheit during the winter to over 100 degrees Fahrenheit during the summer. The average growing season is about 125 days.

Open-File Report↗

USGS2021

Revisiting the declustering of spatial data with preferential sampling

Preferential sampling is a form of data collection that may significantly distort the histogram and the semivariogram of spatially correlated data . Typical situations are a higher sampling density at high-valued areas favorable for mining, and highly contaminated areas in need of environmental remediation. Multiple statistical procedures are devoted to obtaining representative statistics, whose magnitudes should be close to the respective population values. This paper proposes a resampling method that can compensate for preferential sampling of spatially correlated data without using declustering weights. The application of the method herein generates a dataset of median estimates of quantiles of multiple stratified resamples that is free of preferential sampling. The methodology is illustrated with two examples. The first one involves values actually measured in the field and has the advantage of representing a real scenario of spatial fluctuations and preferential sampling. A second dataset is synthetic and has the main benefit of a priori knowledge of the underlying spatial distribution, thus allowing a satisfactory evaluation of the results against the known baseline. Access to computer code is offered for practical application of the method.

Computers & Geosciences↗

USGS2006

Response of Everglades tree islands to environmental change

Tree islands are centers of biodiversity within the Florida Everglades, USA, but the factors controlling their distribution, formation, and development are poorly understood. We use pollen assemblages from tree islands throughout the greater Everglades ecosystem to reconstruct the timing of tree island formation, patterns of development, and response to specific climatic and environmental stressors. These data indicate that fixed (teardrop-shaped) and strand tree islands developed well before substantial human alteration of the system, with initial tree island vegetation in place between 3500 and 500 calibrated years before present (cal yr BP), depending on the location in the Everglades wetland. Tree island development appears to have been triggered by regional- to global-scale climatic events at 2800 cal yr BP, 1600–1500 cal yr BP, 1200–1000 cal yr BP (early Medieval Warm Period), and 500–200 cal yr BP (Little Ice Age). These periods correspond to drought intervals documented in Central and South America and periods of southward displacement of the Intertropical Convergence Zone. The records indicate a coherence of climate patterns in both subtropical North America and the Northern Hemisphere Neotropics. Water management practices of the 20th century altered plant communities and size of tree islands throughout the Everglades. Responses range from loss of tree islands due to artificially long hydroperiods and deep water to expansion of tree islands after flow reductions. These data provide evidence for the rapidity of tree island response to specific hydrologic change and facilitate prediction of the response to future changes associated with Everglades restoration plans.

Florida↗

USGS2018

Site-scale disturbance best predicts moss, vascular plant, and amphibian indices in Ohio wetlands

Loss of wetland habitats and their associated biological communities is a major environmental concern. Quality assessment indices (QAIs) and indices of biological integrity (IBIs) are useful for assessing the responses of taxa to wetland habitat quality and land use in the surrounding landscape. We synthesized the results of our previous predictive modeling studies of five IBIs and QAIs for communities of mosses, vascular plants, and amphibians in forested and emergent wetlands in Ohio (USA). Overall, the single best predictor of these indices was a metric that estimated site-scale (i.e., within the wetland boundaries) substrate and habitat development, alteration, and disturbance. The second most important predictor was a metric that assessed site-scale wetland plant community types and quality, degree of interspersion, and microtopography. Landscape-scale variables better predicted moss and amphibian indices than either vascular plant index. Our results indicate that applying management practices that reduce the effects of site-scale anthropogenic disturbances and increase habitat complexity, such as creating forested buffers surrounding wetlands, increasing wetland contiguity, and creating hummocks and tussocks may simultaneously enhance amphibian, vascular plant, and moss communities in forested and emergent wetlands. Such a focused strategy may enable management agencies to more effectively apportion resources for wetland restoration and construction projects.

Ecological Restoration↗

USGS2015

Estimating concentrations of fine-grained and total suspended sediment from close-range remote sensing imagery

Fluvial sediment, a vital surface water resource, is hazardous in excess. Suspended sediment, the most prevalent source of impairment of river systems, can adversely affect flood control, navigation, fisheries and aquatic ecosystems, recreation, and water supply (e.g., Rasmussen et al., 2009; Qu, 2014). Monitoring programs typically focus on suspended-sediment concentration (SSC) and discharge (SSQ). These time-series data are used to study changes to basin hydrology, geomorphology, and ecology caused by disturbances. The U.S. Geological Survey (USGS) has traditionally used physical sediment sample-based methods (Edwards and Glysson, 1999; Nolan et al., 2005; Gray et al., 2008) to compute SSC and SSQ from continuous streamflow data using a sediment transport-curve (e.g., Walling, 1977) or hydrologic interpretation (Porterfield, 1972). Accuracy of these data is typically constrained by the resources required to collect and analyze intermittent physical samples. Quantifying SSC using continuous instream turbidity is rapidly becoming common practice among sediment monitoring programs. Estimations of SSC and SSQ are modeled from linear regression analysis of concurrent turbidity and physical samples. Sediment-surrogate technologies such as turbidity promise near real-time information, increased accuracy, and reduced cost compared to traditional physical sample-based methods (Walling, 1977; Uhrich and Bragg, 2003; Gray and Gartner, 2009; Rasmussen et al., 2009; Landers et al., 2012; Landers and Sturm, 2013; Uhrich et al., 2014). Statistical comparisons among SSQ computation methods show that turbidity-SSC regression models can have much less uncertainty than streamflow-based sediment transport-curves or hydrologic interpretation (Walling, 1977; Lewis, 1996; Glysson et al., 2001; Lee et al., 2008). However, computation of SSC and SSQ records from continuous instream turbidity data is not without challenges; some of these include environmental fouling, calibration, and data range among sensors. Of greatest interest to many programs is a hysteresis in the relationship between turbidity and SSC, attributed to temporal variation of particle size distribution (Landers and Sturm, 2013; Uhrich et al., 2014). This phenomenon causes increased uncertainty in regression-estimated values of SSC, due to changes in nephelometric reflectance off the varying grain sizes in suspension (Uhrich et al., 2014). Here, we assess the feasibility and application of close-range remote sensing to quantify SSC and particle size distribution of a disturbed, and highly-turbid, river system. We use a consumer-grade digital camera to acquire imagery of the river surface and a depth-integrating sampler to collect concurrent suspended-sediment samples. We then develop two empirical linear regression models to relate image spectral information to concentrations of fine sediment (clay to silt) and total suspended sediment. Before presenting our regression model development, we briefly summarize each data-acquisition method.

Conference Paper↗

USGS2026

Exploring management options for moose at their southern range limits considering growing disease risk

1. Populations of cold-adapted species are increasingly vulnerable along their low-latitude range limits due to shifting environmental conditions, biotic interactions, and anthropogenic pressures. Managing these populations is particularly challenging because of complex ecological dynamics, conflicting stakeholder interests, and decision-making under uncertainty. 2. We explored population growth (λ) of moose ( Alces alces ) under different hypothetical management scenarios, simulating combinations of five hypothetical harvest levels with three levels of disease impact. 3. Facing current disease, the population could support multiple levels of conservative harvest. Under elevated levels of disease-caused mortality, projections indicated declines for all harvest scenarios. We projected increases across all harvest scenarios when overlap with white-tailed deer ( Odocoileus virginianus ) was hypothetically reduced and disease mortality in moose minimized. We investigated whether uncertainty in moose demographic parameters altered population trajectory, and found changes in adult fecundity and calf survival could alter harvest decisions when λ<1. 4. Practical implication . While moose population trajectories may remain stable under current conditions, management of white-tailed deer that reduces moose exposure to lethal parasites may provide the greatest utility in sustaining moose in New York given the potential for increased disease. Continued monitoring of population size, growth, and disease prevalence would inform sustainable moose harvest levels that balance social and ecological management considerations.

New York↗

USGS2021

Twenty-five essential research questions to inform the protection and restoration of freshwater biodiversity

Freshwater biodiversity is declining at an unprecedented rate. Freshwater conservationists and environmental managers have enough evidence to demonstrate that action must not be delayed but have insufficient evidence to identify those actions that will be most effective in reversing the current trend. Here, the focus is on identifying essential research topics that, if addressed, will contribute directly to restoring freshwater biodiversity through supporting ‘bending the curve’ actions (i.e. those actions leading to the recovery of freshwater biodiversity, not simply deceleration of the current downward trend). The global freshwater research and management community was asked to identify unanswered research questions that could address knowledge gaps and barriers associated with ‘bending the curve’ actions. The resulting list was refined into six themes and 25 questions. Although context-dependent and potentially limited in global reach, six overarching themes were identified: (i) learning from successes and failures; (ii) improving current practices; (iii) balancing resource needs; (iv) rethinking built environments; (v) reforming policy and investments; and (vi) enabling transformative change. Bold, efficient, science-based actions are necessary to reverse biodiversity loss. We believe that conservation actions will be most effective when supported by sound evidence, and that research and action must complement one another. These questions are intended to guide global freshwater researchers and conservation practitioners, identify key projects and signal research needs to funders and governments. Our questions can act as springboards for multidisciplinary and multisectoral collaborations that will improve the management and restoration of freshwater biodiversity.

Aquatic Conservation: Marine and Freshwater Ecosys↗

USGS2026

Experimental translocation of a rare Hawaiian tree reveals disparity between remnant and potential habitat

Translocation is implemented worldwide as a conservation strategy for rare and endangered plant species, yet the factors that influence long-term success remain poorly understood. Remnant wild populations are often used as indicators to model habitat preference and select translocation sites, but such populations may be refugia from past biological or anthropogenic stressors and represent sub-optimal habitat conditions for focal taxa. To test assumptions about habitat preferences of rare species, we conducted a four-year experimental translocation of the Critically Endangered Hawaiian tree, ‘ohe mauka, Polyscias bisattenuata (Araliaceae), planting 3,700 saplings across eleven sites spanning diverse environmental conditions both within and beyond the species’ extant range. We measured seventeen predictor variables at the site and individual plant level in categories of climate, surrounding vegetation, soil chemistry, and genetic provenance. We used linear mixed effects models to assess relative effects of predictors on translocated plant survival, growth, and vigor. The factors which influenced plant performance shifted across ontogeny. The height of surrounding vegetation showed an initial negative relationship with two-year survival, but later showed a positive relationship with four-year growth. Four-year growth demonstrated a strong positive relationship with site annual mean temperature. Successful translocation sites were lower in elevation and warmer in temperature than conditions represented by remnant wild populations. Results demonstrate that basing translocation sites solely on limited extant wild occurrences can lead to suboptimal restoration practices, and experimental outplanting across broad conditions may help identify rare species' contemporary habitat preferences.

Hawaii↗

USGS2011

Selenium in aquatic biota inhabiting agricultural drains in the Salton Sea Basin, California

Resource managers are concerned that water conservation practices in irrigated farmlands along the southern border of the Salton Sea, Imperial County, California, could increase selenium concentrations in agricultural drainwater and harm the desert pupfish ( Cyprinodon macularius ), a federally protected endangered species. As part of a broader attempt to address this concern, we conducted a 3-year investigation to collect baseline information on selenium concentrations in seven agricultural drains inhabited by pupfish. We collected water, sediment, selected aquatic food-chain taxa (particulate organic detritus, filamentous algae, net plankton, and midge [Chironomidae] larvae), and two poeciliid fishes (western mosquitofish Gambusia affinis and sailfin molly Poecilia latipinna ) for selenium determinations. The two fish species served as ecological surrogates for pupfish, which we were not permitted to sacrifice. Dissolved selenium ranged from 0.70 to 32.8 μg/L, with selenate as the major constituent. Total selenium concentrations in other environmental matrices varied widely among drains, with one drain (Trifolium 18) exhibiting especially high concentrations in detritus, 5.98–58.0 μg Se/g; midge larvae, 12.7–50.6 μg Se/g; mosquitofish, 13.2–20.2 μg Se/g; and mollies, 12.8–30.4 μg Se/g (all tissue concentrations are based on dry weights). Although toxic thresholds for selenium in fishes from the Salton Sea are still poorly understood, available evidence suggests that ambient concentrations of this element may not be sufficiently elevated to adversely affect reproductive success and survival in selenium-tolerant poeciliids and pupfish.

Environmental Monitoring and Assessment↗

USGS2005

Upper Auglaize watershed AGNPS modeling project

The Upper Auglaize Watershed agricultural non-point source modeling project was an interagency effort to use a Geographic Information System (GIS)-based modeling approach for assessing and reducing pollution from agricultural runoff and other non-point sources. This project applied the U.S. Department of Agriculture (USDA), Agricultural Research Service’s AGricultural Non-Point Source (AGNPS) suite of models to the Upper Auglaize River Watershed, a major watershed within the Maumee River Basin. This modeling project was conducted by an interagency team consisting of a partnership between the: (1) USDA, Agricultural Research Service (ARS); (2) USDA, Natural Resources Conservation Service (NRCS); (3) U.S. Army Corps of Engineers (USACE); (4) U.S. Geological Survey (USGS); (5) Ohio State University; (6) University of Toledo (UT); (7) Heidelberg College; (8) Ohio Department of Natural Resources (ODNR), Division of Soil and Water Conservation; (9) Ohio Environmental Protection Agency (OEPA); and (10) Allen, Auglaize, Van Wert, and Putnam Soil and Water Conservation Districts. The partnership was the first step in a process to eventually apply the model in a portioned subset of watersheds for the Maumee Basin, and then to link them to form a comprehensive basin-wide model This work was performed under the authority of Section 516(e) of the Water Resources Development Act (WRDA) of 1996, as amended, for the purpose of assisting State and local watershed managers with their evaluation, prioritization and implementation of alternatives for soil conservation, sediment trapping and non-point source pollution prevention in the Upper Auglaize River watershed. The project team, working in a cooperative effort, used the models to determine sediment sources, contributing locations, and the effect of application of best management practices (BMPs) on rates of sediment delivery to the mouth of the watershed. The results will be used to guide conservation incentive and land treatment programs. The team relied heavily on Geographic Information System (GIS)-based applications to expedite the application of the model. The results of the analysis demonstrated that the application of BMPs would have a positive effect on reducing the loadings of sediment leaving the mouth of the Upper Auglaize Watershed. An application of 17 percent new no-till acres and eight percent new grassland acres, when randomly applied to the watershed, reduced loadings at the mouth to 82 percent of the simulated existing condition loadings. No-till, conversion of cropland to grassland, other uses including grass buffers, and reforestation of parts of the watershed, were all shown by the model to have a measurable effect on reducing sediment loads. Conversion of all of the cropland in the watershed to no-till would reduce the average unit load (tons of sediment per acre) leaving the mouth of the watershed to a level that is 42 percent of the simulated existing condition load. Ephemeral gullies were found to be the primary source of erosion (72 percent), sediment yield (73 percent), and sediment loading (73 percent). Controlling sediment load means controlling gully erosion and possibly trapping sediment yield before it reaches the stream system. Most BMPs (e.g., no-till, conversion of cropland, etc.) that reduce sheet and rill erosion and its sediment yield will also reduce gully erosion and its sediment yield. However, grassed waterways, which have no effect on sheet and rill erosion, are frequently an effective BMP to prevent ephemeral gullies. And, of course, riparian vegetation and sediment traps would reduce the delivery ratios of all types of landscape erosion. New techniques were developed by the team to quantify the ephemeral gully erosion within the model. When calibrated to available stream gage data the model suggests that more (73% in the existing condition simulation) of the sediment load originates from ephemeral gully erosion than from traditional sheet and rill erosion. The model quantified the value of tile drainage in reducing the sediment load from the watershed. Loadings under drained conditions were always less than loadings under undrained conditions for otherwise identical land uses. The average sediment load of all alternatives for drained loadings was 89.2 percent of the load for the corresponding undrained loadings. The model established that while many conservation incentive programs treat tile drainage as a production practice, significant erosion and sediment control benefits are provided by the practice in comparison to cultivation in an undrained state.

Ohio↗

USGS2023

Using high-frequency monitoring data to quantify city-wide suspended-sediment load and evaluate TMDL goals

Excess sediment is a common reason water bodies in the USA become listed as impaired resulting in total maximum daily loads (TMDL) that require municipalities to invest millions of dollars annually on management practices aimed at reducing suspended-sediment loads (SSLs), yet monitoring data are rarely used to quantify SSLs and track TMDL progress. A monitoring network was created to quantify the SSL from the City of Roanoke, Virginia, USA (CoR), to the Roanoke River and Tinker Creek and help guide TMDL assessment and implementation. Suspended-sediment concentrations were estimated between 2020 and 2022 from high-frequency turbidity data using surrogate linear-regression models. Sixty-one percent of the total three-year SSL resulted from five large storm events. The average suspended-sediment yield from the CoR (58.1 metric tons/km 2 /year) was similar to other urban watersheds in the Eastern United States; however, the yield was nearly five times larger than the TMDL allocation (12.2 metric tons/km 2 /year). The TMDL allocated load was modeled based on a predominantly forested reference watershed and may not be a practical target for highly impervious watersheds within the CoR. The TMDL model used daily input data which likely does not capture the full range of SSLs during storm events, particularly from flashy urban streams. The average SSL following the five large storm events doubled that of the CoR’s annual allocated load from the TMDL. The results of this study highlight the importance of using high-frequency monitoring data to accurately estimate SSLs and evaluate TMDLs in urban areas.

Virginia↗