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On NAAMP and the use of the Internet as a forum for evolving science

Traditionally, science has been communicated through peerreviewed hardcopy. With the rapid growth of internet technology, many new potentials for sharing and evolution of ideas are possible: open, low cost communication between researchers, both accredited and amateur, may allow not joint problem solving at scales previously not possible. Conservation especially, is a dynamic field which may benefit from such rapid dissemination of information. However, among many concerns for the use of this media include 1) lack of peer review, 2) potential for , 3) dissemination of misinformation, especially when dealing with charismatic taxa 4) the possibility of creating an apparent need for an exciting technology, 5) implications of sharing data, 6) potential for distraction and additional concerns added by exposure to media and public attention, and 7) overall gain to effort ratio. With the increased facility of commmunication, feedback from the implementation of NAAMP III Online will help guide the direction and media choice of future conferences.

Book chapter↗

Perspectives: Gene Expression in Fisheries Management

Functional genes and gene expression have been connected to physiological traits linked to effective production and broodstock selection in aquaculture, selective implications of commercial fish harvest, and adaptive changes reflected in non-commercial fish populations subject to human disturbance and climate change. Gene mapping using single nucleotide polymorphisms (SNPs) to identify functional genes, gene expression (analogue microarrays and real-time PCR), and digital sequencing technologies looking at RNA transcripts present new concepts and opportunities in support of effective and sustainable fisheries. Genomic tools have been rapidly growing in aquaculture research addressing aspects of fish health, toxicology, and early development. Genomic technologies linking effects in functional genes involved in growth, maturation and life history development have been tied to selection resulting from harvest practices. Incorporating new and ever-increasing knowledge of fish genomes is opening a different perspective on local adaptation that will prove invaluable in wild fish conservation and management. Conservation of fish stocks is rapidly incorporating research on critical adaptive responses directed at the effects of human disturbance and climate change through gene expression studies. Genomic studies of fish populations can be generally grouped into three broad categories: 1) evolutionary genomics and biodiversity; 2) adaptive physiological responses to a changing environment; and 3) adaptive behavioral genomics and life history diversity. We review current genomic research in fisheries focusing on those that use microarrays to explore differences in gene expression among phenotypes and within or across populations, information that is critically important to the conservation of fish and their relationship to humans.

Current Zoology↗

Crystalline Silica Primer

Crystalline silica is the scientific name for a group of minerals composed of silicon and oxygen. The term crystalline refers to the fact that the oxygen and silicon atoms are arranged in a threedimensional repeating pattern. This group of minerals has shaped human history since the beginning of civilization. From the sand used for making glass to the piezoelectric quartz crystals used in advanced communication systems, crystalline silica has been a part of our technological development. Crystalline silica's pervasiveness in our technology is matched only by its abundance in nature. It's found in samples from every geologic era and from every location around the globe. Scientists have known for decades that prolonged and excessive exposure to crystalline silica dust in mining environments can cause silicosis, a noncancerous lung disease. During the 1980's, studies were conducted that suggested that crystalline silica also was a carcinogen. As a result of these findings, crystalline silica has been regulated under the Occupational Safety and Health Administration's (OSHA) Hazard Communication Standard (HCS). Under HCS, OSHAregulated businesses that use materials containing 0.1% or more crystalline silica must follow Federal guidelines concerning hazard communication and worker training. Although the HCS does not require that samples be analyzed for crystalline silica, mineral suppliers or OSHAregulated businesses may choose to do so if they wish to show that they are exempt from the requirements of HCS. Because crystalline silica is an extremely common mineral and the HCS will affect many mineral commodities, it is important then, that there be as clear an understanding as possible of what is and what is not crystalline silica, and where it is found and used, and how it is qualitatively and quantitatively identified. This primer is an attempt to accomplish this in as nontechnical a manner as possible. This primer will examine crystalline silica. Part I will describe, in nonscientific terms, what crystalline silica is and how we come in contact with it. Part II will discuss the regulatory decisions that have created new interest in this ancient and widespread substance and will present a nontechnical overview of the techniques used to measure crystalline silica. Because this primer is meant to be a starting point for anyone interested in learning more about crystalline silica, a list of selected readings and other resources is included. The detailed glossary, which defines many terms that are beyond the scope of this publication, is designed to help the reader move from this presentation to a more technical one, the inevitable next step.

Special Publication↗

MASS STORAGE ESTIMATES FOR THE DIGITAL MAPPING AREA.

Modern computer technology offers cartographers the potential for transition from conventional film-oriented methods to digital techniques as the way of mapping in the future. Traditional methods utilizing silver halide aerial and lithographic films for storage are time proven, and film is a very high density archival storage media. In view of this, proponents of the digital era recognize that a breakthrough in mass storage technology may be required to attain a reasonable degree of computerization of the cartographic mapping and data management process.

Conference Paper↗

Toward digital geologic map standards: a progress report

Establishing modern scientific and technical standards for geologic maps and their derivative map products is vital to both producers and users of such maps as we move into an age of digital cartography. Application of earth-science data in complex geographic information systems, acceleration of geologic map production, and reduction of population costs require that national standards be developed for digital geologic cartography and computer analysis. Since December 1988, under commission of the Chief Geologic of the U.S. Geological Survey and the mandate of the National Geologic Mapping Program (with added representation from the Association of American State Geologists), a committee has been designing a comprehensive set of scientific map standards. Three primary issues were: (1) selecting scientific symbology and its digital representation; (2) creating an appropriate digital coding system that characterizes geologic features with respect to their physical properties, stratigraphic and structural relations, spatial orientation, and interpreted mode of origin; and (3) developing mechanisms for reporting levels of certainty for descriptive as well as measured properties. Approximately 650 symbols for geoscience maps, including present usage of the U.S Geological Survey, state geological surveys, industry, and academia have been identified and tentatively adopted. A proposed coding system comprises four-character groupings of major and minor codes that can identify all attributes of a geologic feature. Such a coding system allows unique identification of as many as 105 geologic names and values on a given map. The new standard will track closely the latest developments of the Proposed Standard for Digital Cartographic Data soon to be submitted to the National Institute of Standards and Technology by the Federal Interagency Coordinating Committee on Digital Cartography. This standard will adhere generally to the accepted definitions and specifications for spatial data transfer. It will require separate specifications of digital cartographic quality relating to positional accuracy and ranges of measured and interpreted values such as geologic age and rock composition. Provisional digital geologic map standards will be published for trial implementation. After approximately two years, when comments on the proposed standards have been solicited and modifications made, formal adoption of the standards will be recommended. Widespread acceptance of the new standards will depend on their applicability to the broadest range of earth-science map products and their adaptability to changing cartographic technology.

Conference Paper↗

Economics of utilization of high sulfur coal resources - an integrated market approach

Before the Clean Air Act Amendments of 1990, coal policies - especially coal research policies - were geared to find a solution to the sulfur emission problem. However, technologies to reduce sulfur emissions cannot be tailored for a single coal. A technology that will clean Illinois coal to compliance levels will do the same, or nearly the same, for most other types of coal. This paper will discuss an integrated approach to the analysis of the future of coals from different regions in the United States and its implications for coal-related policies by government and industry.

Mining Engineering↗

Gas in the Uinta Basin, Utah - Resources in continuous accumulations

Continuous-type gas plays can be envisioned as large areas within which the reservoir rock is everywhere charged with gas. As part of its 1995 National Assessment of oil and gas resources, the U.S. Geological Survey identified four continuous-type gas plays in the Uinta Basin. These occur in sandstone reservoirs of the lower Tertiary Wasatch Formation (two plays) and the underlying Upper Cretaceous Mesaverde Group (two plays). Only the play representing the eastern part of the Wasatch Formation continuous accumulation (Natural Buttes area) has been the target of appreciable drilling activity to date. The volume of undiscovered gas estimated to be recoverable from these four plays using existing technology and development practices ranges between 3.7 trillion cubic feet of gas (TCFG) (95th fractile) and 11.9 TCFG (5th fractile), and averages 7.0 TCFG. However, these are geologically based resource estimates, made without direct reference to economic viability. Economic analysis indicates that only a fraction of this assessed resource could be economically found and produced at prices less than $2.00 per thousand cubic feet of gas (MCFG), based on costs that prevailed at the beginning of 1993. Production characteristics of continuous-type gas plays vary significantly from well to well. Difficulty in identifying locations with poor production characteristics in advance of drilling contributes to the unfavorable economics of some plays. The need exists for improvements in technology and geologic understanding that increase the chances of selectively drilling the more productive locations within a continuous-type play.

Mountain Geologist↗

Scour measurements at bridge sites during 1993 Upper Mississippi River Basin flood

The record flood on the upper Mississippi River basin during the summer of 1993 provided a rare opportunity for collection of data on streambed scour at bridges and for testing of scour data collection equipment under extreme hydraulic conditions. Real-time scour measurements at bridges are categorized into one of three classes according to their objective: inspection measurements, limited-detail measurements, and detailed measurements. All three types of measurements were made during the 1993 flood. Recent advances in technology and improved application of existing technology allow hydraulic and channel bathymetry data to be collected more accurately, in greater detail, and more efficiently than previously possible. Two limited-detail and two detailed data sets are presented. The observed depths of scour are consistently less than the depths of pier scour estimated by use of recommended procedures. Additional data processing, analysis, and visualization are required to characterize and understand complex processes measured by use of state-of-the-art instrumentation.

Upper Mississippi River basin↗

Enhanced CAH dechlorination in a low permeability, variably-saturated medium

An innovative pilot-scale field test was performed to enhance the anaerobic reductive dechlorination (ARD) of chlorinated aliphatic hydrocarbons (CAHs) in a low permeability, variably-saturated formation. The selected technology combines the use of a hydraulic fracturing (fracking) technique with enhanced bioremediation through the creation of highly-permeable sand- and electron donor-filled fractures in the low permeability matrix. Chitin was selected as the electron donor because of its unique properties as a polymeric organic material and based on the results of lab studies that indicated its ability to support ARD. The distribution and impact of chitin- and sand-filled fractures to the system was evaluated using hydrologic, geophysical, and geochemical parameters. The results indicate that, where distributed, chitin favorably impacted redox conditions and supported enhanced ARD of CAHs. These results indicate that this technology may be a viable and cost-effective approach for remediation of low-permeability, variably saturated systems.

Conference Paper↗

Geothermal systems of the Great Basin and U.S. Geological Survey plans for a regional resource assessment

Based on current projections, the United States faces the need to increase its electrical power generating capacity by 40% (approximately 300,000 Megawatts-electrical or MWe) over the next 20 years (Energy Information Administration, EIA - Department of Energy). A critical question for the near future is the extent to which geothermal resources can contribute to this increasing demand for electricity. Geothermal energy constitutes one of the nation's largest sources of renewable and environmentally benign electrical power, yet the installed capacity of 2860 MWe falls far short of estimated geothermal resources. This is particularly true for the Great Basin region of the western United States, which has an installed capacity of about 500 MWe, much lower than the 7500 MWe resource estimated by the U.S. Geological Survey (USGS) in the late 1970s. The reasons for the limited development of geothermal power are varied, but political, economic and technological developments suggest the time is ripe for a new assessment effort. Technologies for power production from geothermal systems and scientific understanding of geothermal resource occurrence have improved dramatically in recent years. The primary challenges facing geothermal resource studies are (1) understanding the thermal, chemical and mechanical processes that lead to the colocation of high temperatures and high permeabilities necessary for the formation of geothermal systems and (2) developing improved techniques for locating, characterizing and exploiting these systems. Starting in the fall of 2002, the USGS will begin work with institutions funded by the Department of Energy's (DOE) Geothermal Research Program to investigate the nature and extent of geothermal systems in the Great Basin and to produce an updated assessment of available geothermal resources.

Conference Paper↗

Geothermal resources of California sedimentary basins

The 2004 Department of Energy (DOE) Strategic Plan for geothermal energy calls for expanding the geothermal resource base of the United States to 40,000 MW of electric power generating potential. This will require advances in technologies for exploiting unconventional geothermal resources, including Enhanced Geothermal Systems (EGS) and geopressured geothermal. An investigation of thermal conditions in California sedimentary basins through new temperature and heat flow measurements reveals significant geothermal potential in some areas. In many of the basins, the combined cooling effects of recent tectonic and sedimentary processes result in relatively low (<60 mW/m2) heat flow and geothermal gradients. For example, temperatures in the upper 3 km of San Joaquin, Sacramento and Ventura basins are typically less than 125??C and do not reach 200??c by 5 km. By contrast, in the Cuyama, Santa Maria and western Los Angeles basins, heat flow exceeds 80 mW/m2 and temperatures near or above 200??C occur at 4 to 5 km depth, which represents thermal conditions equivalent to or hotter than those encountered at the Soultz EGS geothermal site in Europe. Although the extractable geothermal energy contained in these basins is not large relative to the major California producing geothermal fields at The Geysers or Salton Sea, the collocation in the Los Angeles basin of a substantial petroleum extraction infrastructure and a major metropolitan area may make it attractive for eventual geothermal development as EGS technology matures.

Conference Paper↗

An open-water electrical geophysical tool for mapping sub-seafloor heavy placer minerals in 3D and migrating hydrocarbon plumes in 4D

A towed-streamer technology has been developed for mapping placer heavy minerals and dispersed hydrocarbon plumes in the open ocean. The approach uses induced polarization (IP), an electrical measurement that encompasses several different surface-reactive capacitive and electrochemical phenomena, and thus is ideally suited for mapping dispersed or disseminated targets. The application is operated at sea by towing active electrical geophysical streamers behind a ship; a wide area can be covered in three dimensions by folding tow-paths over each other in lawn-mower fashion. This technology has already been proven in laboratory and ocean settings to detect IP-reactive titanium-and rare-earth (REE) minerals such as ilmenite and monazite. By extension, minerals that weather and accumulate/concentrate by a similar mechanism, including gold, platinum, and diamonds, may be rapidly detected and mapped indirectly even when dispersed and covered with thick, inert sediment. IP is also highly reactive to metal structures such as pipelines and cables. ?? 2011 MTS.

Conference Paper↗

Building transparent data access for ocean observatories: Coordination of U.S. IOOS DMAC with NSF's OOI Cyberinfrastructure

The NOAA-led U.S. Integrated Ocean Observing System (IOOS) and the National Science Foundation's Ocean Observatories Initiative (OOI) have been collaborating since 2007 on advanced tools and technologies that ensure open access to ocean observations and models. Initial collaboration focused on serving ocean data via cloud computing-a key component of the OOI cyberinfrastructure (CI) architecture. As the OOI transitioned from planning to execution in the Fall of 2009, an OOI/IOOS team developed a customer-based "use case" to align more closely with the emerging objectives of OOI-CI team's first software release scheduled for Summer 2011 and provide a quantitative capacity for stress-testing these tools and protocols. A requirements process was initiated with coastal modelers, focusing on improved workflows to deliver ocean observation data. Accomplishments to date include the documentation and assessment of scientific workflows for two "early adopter" modeling teams from IOOS Regional partners (Rutgers-the State University of New Jersey and University of Hawaii's School of Ocean and Earth Science and Technology) to enable full understanding of data sources and needs; generation of all-inclusive lists of the data sets required and those obtainable through IOOS; a more complete understanding of areas where IOOS can expand data access capabilities to better serve the needs of the modeling community; and development of "data set agents" (software) to facilitate data acquisition from numerous data providers and conversions of the data format to the OOI-CI canonical form. ?? 2011 MTS.

Conference Paper↗

Coalbed methane: Clean energy for the world

Coalbed methane (CBM) has the potential to emerge as a significant clean energy resource. It also has the potential to replace other diminishing hydrocarbon reserves. The latest developments in technologies and methodologies are playing a key role in harnessing this unconventional resource. Some of these developments include adaptations of existing technologies used in conventional oil and gas generations, while others include new applications designed specifically to address coal's unique properties. Completion techniques have been developed that cause less damage to the production mechanisms of coal seams, such as those occurring during cementing operations. Stimulation fluids have also been engineered specifically to enhance CBM production. Deep coal deposits that remain inaccessible by conventional mining operations offer CBM development opportunities.

Oilfield Review↗

National Geodata Policy Forum: present and emerging U.S. policies governing the development, evolution, and use of the National Spatial Data Infrastructure: summary report

The first National Geo-Data Policy Forum was held on May 10-12, 1993, in Tyson's Corner, Virginia. The objective of the National Geo-Data Policy Forum was to examine policies related to the evolution and use of the National Spatial Data Infrastructure (NSDI). A second goal was to identify issues concerning spatial data technology and its use by all citizens. Policy makers from the public and private sectors offered ideas on the myriad issues and questions related to the NSDI and learned of concerns that their organizations must address. The links that connect the NSDI to the Clinton Administration's National Information Infrastructure were identified and discussed. The forum offered participants an opportunity to define the NSDI's role in carrying out technology policy.

General Information Product↗

U.S. Geological Survey: A synopsis of Three-dimensional Modeling

The U.S. Geological Survey (USGS) is a multidisciplinary agency that provides assessments of natural resources (geological, hydrological, biological), the disturbances that affect those resources, and the disturbances that affect the built environment, natural landscapes, and human society. Until now, USGS map products have been generated and distributed primarily as 2-D maps, occasionally providing cross sections or overlays, but rarely allowing the ability to characterize and understand 3-D systems, how they change over time (4-D), and how they interact. And yet, technological advances in monitoring natural resources and the environment, the ever-increasing diversity of information needed for holistic assessments, and the intrinsic 3-D/4-D nature of the information obtained increases our need to generate, verify, analyze, interpret, confirm, store, and distribute its scientific information and products using 3-D/4-D visualization, analysis, modeling tools, and information frameworks. Today, USGS scientists use 3-D/4-D tools to (1) visualize and interpret geological information, (2) verify the data, and (3) verify their interpretations and models. 3-D/4-D visualization can be a powerful quality control tool in the analysis of large, multidimensional data sets. USGS scientists use 3-D/4-D technology for 3-D surface (i.e., 2.5-D) visualization as well as for 3-D volumetric analyses. Examples of geological mapping in 3-D include characterization of the subsurface for resource assessments, such as aquifer characterization in the central United States, and for input into process models, such as seismic hazards in the western United States.

Book chapter↗

Mineral resource of the month: Graphite

The article presents facts about graphite ideal for industrial applications. Among the characteristics of graphite are its metallic luster, softness, perfect basal cleavage and electrical conductivity. Batteries, brake linings and powdered metals are some of the products that make use of graphite. It attributes the potential applications for graphite in high-technology fields to innovations in thermal technology and acid-leaching techniques.

Earth↗

Applications of selective ion exchange for perchlorate removal, recovery, and environmental forensics

Perchlorate (ClO4-) is a widespread contaminant found in drinking water and groundwater that has caused far-reaching ramifications ranging from public health issues to potential liabilities arising from environmental clean-up requirements. The chapter summarizes recent developments in highly selective and regenerable ion exchange technologies for removing ClO4- from contaminated water. The technologies rely on a unique, highly specific resin to trap ClO4-. The resin is then regenerated and ClO4- is either destroyed or recovered—leading to significant cost reduction and waste minimization. The ability to recover trace quantities of pure ClO4- from contaminated media also allows unambiguous identification of the sources of its contamination through stable isotope ratio analysis of chlorine and oxygen atoms. We provide detailed descriptions of the techniques for extracting, purifying, and crystallizing trade amounts of ClO4- and characterizing its isotopic composition for fingerprinting in the environment.

Book chapter↗