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At least 721 records · Page 40Linked to original sources

USGS2026

Evaluating groundwater quality influences from oil field operations and other anthropogenic activities in an urban setting, Santa Fe Springs, California

Groundwater quality is often affected by anthropogenic activities in urban settings. This study examines groundwater quality in and around the Santa Fe Springs Oil Field in Los Angeles County, California, where oil and gas production commonly intersects with high density industrial, commercial and residential land uses. Utilizing a combination of new and historical data, we evaluated potential pathways that would allow for oil field formation fluids to migrate into groundwater and whether mixing may have occurred based on the distribution of groundwater and oil field formation fluid tracers in samples. Samples were analyzed for a wide array of constituents including volatile organic compounds, light hydrocarbons, major ions, and various isotopic compositions. Despite evidence of oil field infrastructure providing potential pathways of migration via uncemented annular spaces, casing breaches and historical disposal of oil field formation water in surface ponds, the distribution and occurrence of stable isotopes of water, chloride, boron, and total dissolved solids do not indicate mixing of oil field formation water and groundwater. However, methane isotopic signatures and the presence of heavier alkanes suggest gas from oil-bearing formations have migrated from depth via oil field well infrastructure. Volatile organic compound detections were mainly from manufactured compounds unrelated to oil and gas production, with a relatively limited number of petroleum hydrocarbons also detected. Volatile organic compounds were generally found in wells tapping shallow, modern aged groundwater, indicating anthropogenic activities occurring at or near land surface as the source. Study results suggest that while oil field infrastructure provides migration pathways for oil field formation fluids to be introduced into groundwater, urban land uses not related to oil and gas production are the primary drivers of groundwater quality degradation.

California↗

USGS1998

Flow of river water into a karstic limestone aquifer: 2. Dating the young fraction in groundwater mixtures in the Upper Floridan aquifer near Valdosta, Georgia

Tritium/helium-3 ( 3 H/ 3 He) and chlorofluorocarbon (CFCs, CFC–11, CFC–12, CFC–113) data are used to date the young fraction in groundwater mixtures from a karstic limestone aquifer near Valdosta, Georgia, where regional paleowater in the Upper Floridan aquifer receives recharge from two young sources—the flow of Withlacoochee River water through sinkholes in the river bed, and leakage of infiltration water through post-Eocene semi-confining beds above the Upper Floridan aquifer. In dating the young fraction of mixtures using CFCs, it is necessary to reconstruct the CFC concentration that was in the young fraction prior to mixing. The 3 H/ 3 He age is independent of the extent of dilution with older ( 3 H-free and 3 He trit -free) water. The groundwater mixtures are designated as Type-1 for mixtures of regional paleowater and regional infiltration water and Type-2 for mixtures containing more than approximately 4% of river water. The fractions of regional paleowater, regional infiltration water, and Withlacoochee River water in the groundwater mixtures were determined from Cl − and δ 18 O data for water from the Upper Floridan aquifer at Valdosta, Georgia. The chlorofluorocarbons CFC–11 and CFC–113 are removed by microbial degradation and/or sorption processes in most anaerobic (Type-2) groundwater at Valdosta, but are present in some aerobic Type-1 water. CFC–12 persists in both SO 4 -reducing and methanogenic water. The very low detection limits for CFCs (approximately 0.3 pg kg −1 ) permitted CFC–11 and CFC–12 dating of the fraction of regional infiltration water in Type-1 mixtures, and CFC-12 dating of the river-water fraction in Type-2 mixtures. Overall, approximately 50% of the 85 water samples obtained from the Upper Floridan aquifer have CFC–12-based ages of the young fraction that are consistent with the 3 H concentration of the groundwater. Because of uncertainties associated with very low 3 H and 3 He content in dilute mixtures, 3 H/ 3 He dating is limited to the river-water fraction in Type-2 mixtures containing more than about 10% river water. Of the 41 water samples measured for 3 H/ 3 He dating, dilution of 3 H and low 3 He concentration limited 3 H/ 3 He dating to 16 mixtures in which 3 H/ 3 He ages are defined with errors ranging from ±2 to ±7.5 a (1 σ). After correction for dilution with (assumed) CFC-free regional infiltration water and regional paleowater in the Upper Floridan aquifer, adjusted CFC–12 ages agree with 3 H/ 3 He ages within 5 a or less in 7 of the 9 co-dated Type-2 mixtures. Tritium data and dating based on both CFC–11 and CFC–12 in Type-1 mixtures indicate that travel times of infiltration water through the overlying Post-Eocene semi-confining beds exceed 35 a. The CFC and 3 H/ 3 He dating indicate that the river fraction in most groundwater entered the groundwater reservoir in the past 20 to 30 a. Few domestic and municipal supply wells sampled intercept water younger than 5 a. Calculated velocities of river water in the Upper Floridan aquifer downgradient of the sinkhole area range from 0.4 to 8.2 m/d. Radiocarbon data indicate that ages of the regional paleowater are on the 10 000-a time scale. An average lag time of approximately 10 to 25 a is determined for discharge of groundwater from the surficial and intermediate aquifers above the Upper Floridan aquifer to the Withlacoochee River.

Georgia↗

USGS1999

Evaluation of the atmosphere as a source of volatile organic compounds in shallow groundwater

The atmosphere as a source of volatile organic compounds (VOCs) in shallow groundwater was evaluated over an area in southern New Jersey. Chloroform, methyl tertbutyl ether (MTBE), 1,1,1‐trichloroethane, tetrachloroethylene (PCE), and carbon disulfide (not a VOC) were detected frequently at low‐level concentrations in a network of 78 shallow wells in the surficial Kirkwood‐Cohansey aquifer system. The atmosphere was sampled for these compounds and only MTBE concentrations were high enough to potentially explain frequent detection in shallow groundwater. A mathematical model of reactive transport through the unsaturated zone is presented to explain how variations in unsaturated properties across the study area could explain differences in MTBE concentrations in shallow groundwater given the atmosphere as the source. Even when concentrations of VOCs in groundwater are low compared to regulatory concentration limits, it is critical to know the source. If the VOCs originate from a point source((), concentrations in groundwater could potentially increase over time to levels of concern as groundwater plumes evolve, whereas if the atmosphere is the source, then groundwater concentrations would be expected to remain at low‐level concentrations not exceeding those in equilibrium with atmospheric concentrations. This is the first analysis of VOC occurrence in shallow groundwater involving colocated atmosphere data.

Water Resources Research↗

USGS2005

Old groundwater influence on stream hydrochemistry and catchment response times in a small Sierra Nevada catchment: Sagehen Creek, California

The relationship between the chemical and isotopic composition of groundwater and residence times was used to understand the temporal variability in stream hydrochemistry in Sagehen basin, California. On the basis of the relationship between groundwater age and [Ca 2+ ], the mean residence time of groundwater feeding Sagehen Creek during base flow is approximately 28 years. [Cl − ]:[Ca 2+ ] ratios in Sagehen Creek can be used to distinguish between two important processes: changes in the apparent age of groundwater discharging into the creek and dilution with snowmelt. The mean residence time of groundwater discharging into the creek is approximately 15 years during snowmelt periods. The results from this study have implications for hydrograph separation studies as groundwater is not a single, well‐mixed chemical component but rather is a variable parameter that predictably depends on groundwater residence time. Most current models of catchment hydrochemistry do not account for chemical and isotopic variability found within the groundwater reservoir. In addition, this study provides valuable insight into the long‐term hydrochemical response of a catchment to perturbations as catchment‐flushing times are related to the mean residence time of water in a basin.

California↗

USGS2011

A novel approach for direct estimation of fresh groundwater discharge to an estuary

Coastal groundwater discharge is an important source of freshwater and nutrients to coastal and estuarine systems. Directly quantifying the spatially integrated discharge of fresh groundwater over a coastline is difficult due to spatial variability and limited observational methods. In this study, I applied a novel approach to estimate net freshwater discharge from a groundwater-fed tidal creek over a spring-neap cycle, with high temporal resolution. Acoustic velocity instruments measured tidal water fluxes while other sensors measured vertical and lateral salinity to estimate cross-sectionally averaged salinity. These measurements were used in a time-dependent version of Knudsen's salt balance calculation to estimate the fresh groundwater contribution to the tidal creek. The time-series of fresh groundwater discharge shows the dependence of fresh groundwater discharge on tidal pumping, and the large difference between monthly mean discharge and instantaneous discharge over shorter timescales. The approach developed here can be implemented over timescales from days to years, in any size estuary with dominant groundwater inputs and well-defined cross-sections. The approach also directly links delivery of groundwater from the watershed with fluxes to the coastal environment. Copyright. Published in 2011 by the American Geophysical Union.

Massachusetts↗

USGS2012

Resolving hyporheic and groundwater components of streambed water flux

Hyporheic and groundwater fluxes typically occur together in permeable sediments beneath flowing stream water. However, streambed water fluxes quantified using the thermal method are usually interpreted as representing either groundwater or hyporheic fluxes. Our purpose was to improve understanding of co-occurring groundwater and hyporheic fluxes using streambed temperature measurements and analysis of one-dimensional heat transport in shallow streambeds. First, we examined how changes in hyporheic and groundwater fluxes affect their relative magnitudes by reevaluating previously published simulations. These indicated that flux magnitudes are largely independent until a threshold is crossed, past which hyporheic fluxes are diminished by much larger (1000-fold) groundwater fluxes. We tested accurate quantification of co-occurring fluxes using one-dimensional approaches that are appropriate for analyzing streambed temperature data collected at field sites. The thermal analytical method, which uses an analytical solution to the one-dimensional heat transport equation, was used to analyze results from a numerical heat transport model, in which hyporheic flow was represented as increased thermal dispersion at shallow depths. We found that co-occurring groundwater and hyporheic fluxes can be quantified in streambeds, although not always accurately. For example, using a temperature time series collected in a sandy streambed, we found that hyporheic and groundwater flow could both be detected when thermal dispersion due to hyporheic flow was significant compared to thermal conduction. We provide guidance for when thermal data can be used to quantify both hyporheic and groundwater fluxes, and we show that neglecting thermal dispersion may affect accuracy and interpretation of estimated streambed water fluxes.

Water Resources Research↗

USGS2019

Seasonal and spatial variation in the location and reactivity of a nitrate-contaminated groundwater discharge zone in a lakebed

Groundwater discharge delivering anthropogenic N from surrounding watersheds can impact lake nutrient budgets. However, upgradient groundwater processes and changing dynamics in N biogeochemistry at the groundwater-lake interface are complex and difficult to resolve. In this study, hydrograph variations in a groundwater flow-through lake altered discharge patterns of a wastewater-derived, groundwater contaminant plume, thereby affecting biogeochemical processes controlling N transport. Groundwater geochemistry 15 cm under the lakebed along transects perpendicular to shore varied from oxic to anoxic with increasing nitrate concentrations (10-75 M) and corresponding gradients in nitrite and nitrous oxide. Porewater depth profiles of nitrate concentrations and stable isotope compositions largely reflected upgradient groundwater N sources and N-cycle processes, with minor additional nitrate reduction in the shallowest lakebed sediments. Potential denitrification rates determined in laboratory microcosms were 10-100 fold higher in near-surface sediments (0-5 cm) than in deeper sediments (5-30 cm) and were correlated with sediment carbon content and abundance of denitrification genes (nirS, nosZI, and nosZII). Potential anammox-driven N2 production was highest in deeper anoxic sediments. Injection of bromide and nitrite in the lake sediments indicated a vertical porewater velocity of 4-5 cm hr-1, with highest nitrite consumption rates above 10 cm. However, short residence times in the shallow sediments allowed only a small fraction of the contaminant nitrate to be removed before discharging into the lake. Results demonstrate the importance of resolving local versus upgradient biogeochemical processes affecting contaminant distribution in discharge areas, and transient migration of local gradients and processes in response to changing lake levels and groundwater flow paths.

Journal of Geophysical Research: Biogeosciences↗

USGS2020

Baseflow age distributions and depth of active groundwater flow in a snow‐dominated mountain headwater basin

Deeper flows through bedrock in mountain watersheds could be important, but lack of data to characterize bedrock properties limits understanding. To address data scarcity, we combine a previously published integrated hydrologic model of a snow‐dominated, headwater basin of the Colorado River with a new method for dating baseflow age using dissolved gas tracers SF 6 , CFC‐113, N 2 , and Ar. The original flow model predicts the majority of groundwater flow through shallow alluvium (<8 m) sitting on top of less permeable bedrock. The water moves too quickly and is unable to reproduce observed SF 6 concentrations. To match gas data, bedrock permeability is increased to allow a larger fraction of deeper and older groundwater flow (median 112 m). The updated hydrologic model indicates interannual variability in baseflow age (3–12 years) is controlled by the volume of seasonal interflow and tightly coupled to snow accumulation and monsoon rain. Deeper groundwater flow remains stable (11.7 ± 0.7 years) as a function mean historical recharge to bedrock hydraulic conductivity (R/K). A sensitivity analysis suggests that increasing bedrock K effectively moves this alpine basin away from its original conceptualization of hyperlocalized groundwater flow (high R/K) with groundwater age insensitive to changes in water inputs. Instead, this basin is situated close to the precipitation threshold defining recharge controlled groundwater flow conditions (low R/K) in which groundwater age increases with small reductions in precipitation. Work stresses the need to explore alternative methods characterizing bedrock properties in mountain basins to better quantify deeper groundwater flow and predict their hydrologic response to change.

Colorado↗

USGS2021

Direct observation of the depth of active groundwater circulation in an alpine watershed

The depth of active groundwater circulation is a fundamental control on stream flows and chemistry in mountain watersheds, yet it remains challenging to characterize and is rarely well constrained. We collected hydraulic conductivity, hydraulic head, temperature, chemical, noble gas, and 3 H/ 3 He groundwater age data from discrete levels in two boreholes 46 and 81 m deep in an alpine watershed, in combination with chemical and age data from shallow groundwater discharge, to discern groundwater flow rates at different depths and directly observe active and inactive groundwater. Vertical head gradients are steep (average of 0.4) and thermal profiles are consistent with typical linear conductive continental geotherms. Groundwater deeper than ∼20 m is distinct from shallow groundwater and creek water in its chemistry, noble gas signature, and age (dominantly >65 years compared to <9 years). Together these results suggest low vertical groundwater flow velocities and a relatively shallow active circulation depth of ∼20 m. This hypothesis is tested with a simple 2‐D numerical fluid flow and heat transport model representing a hillslope transect through the two boreholes. The modeling indicates that the subhorizontally bedded sedimentary rocks underlying the basin are highly anisotropic with low vertical hydraulic conductivity, and at most ∼10% of bedrock recharge (equivalent to <2% of stream baseflow) flows below a depth of 20 m. The study demonstrates the considerable value of discrete‐depth hydrogeologic, chemical, and age data for determining active circulation depth, and illustrates an approach for maximizing the utility of individual boreholes drilled for mountain bedrock aquifer characterization.

Colorado↗

USGS2008

Groundwater flow and solute movement to drain laterals, western San Joaquin Valley, California: 2. Quantitative hydrologic assessment

Groundwater flow modeling was used to quantitatively assess the hydrologic processes affecting ground water and solute movement to drain laterals. Modeling results were used to calculate the depth distribution of groundwater flowing into drain laterals at 1.8 m (drain lateral 1) and 2.7 m (drain lateral 2) below land surface. The simulations indicated that under nonirrigated conditions about 89% of the flow in drain lateral 2 was from groundwater originating from depths greater than 6 m below land surface. The deep groundwater has higher selenium concentrations than shallow groundwater. Simulation of irrigated conditions indicates that as recharge (deep percolation) increases, the proportional contribution of deep groundwater to drain lateral flow decreases. Groundwater flow paths and travel times estimated from the simulation results indicate that groundwater containing high concentrations of selenium (greater than 780 μg L −1 ) probably will continue to enter drain lateral 2 for decades.

California↗

USGS2010

The use of simulation and multiple environmental tracers to quantify groundwater flow in a shallow aquifer

Measurements of the concentrations of chlorofluorocarbons (CFCs), tritium, and other environmental tracers can be used to calculate recharge ages of shallow groundwater and estimate rates of groundwater movement. Numerical simulation also provides quantitative estimates of flow rates, flow paths, and mixing properties of the groundwater system. The environmental tracer techniques and the hydraulic analyses each contribute to the understanding and quantification of the flow of shallow groundwater. However, when combined, the two methods provide feedback that improves the quantification of the flow system and provides insight into the processes that are the most uncertain. A case study near Locust Grove, Maryland, is used to investigate the utility of combining groundwater age dating, based on CFCs and tritium, and hydraulic analyses using numerical simulation techniques. The results of the feedback between an advective transport model and the estimates of groundwater ages determined by the CFCs improve a quantitative description of the system by refining the system conceptualization and estimating system parameters. The plausible system developed with this feedback between the advective flow model and the CFC ages is further tested using a solute transport simulation to reproduce the observed tritium distribution in the groundwater. The solute transport simulation corroborates the plausible system developed and also indicates that, for the system under investigation with the data obtained from 0.9-m-long (3-foot-long) well screens, the hydrodynamic dispersion is negligible. Together the two methods enable a coherent explanation of the flow paths and rates of movement while indicating weaknesses in the understanding of the system that will require future data collection and conceptual refinement of the groundwater system.

Water Resources Research↗

USGS2010

Estimating 14C groundwater ages in a methanogenic aquifer

This paper addresses the problem of 14 C age dating of groundwaters in a confined regional aquifer affected by methanogenesis. Increasing CH 4 concentrations along the groundwater flow system and 13 C and 14 C isotopic data for dissolved inorganic carbon, dissolved organic carbon, and CH 4 clearly show the effect of methanogenesis on groundwater chemistry. Inverse reaction path modeling using NETPATH indicates the predominant geochemical reactions controlling the chemical evolution of groundwater in the aquifer are incongruent dissolution of dolomite, ion exchange, methanogenesis, and oxidation of sedimentary organic matter. Modeling of groundwater 14 C ages using NETPATH indicates that a significant part of groundwater in the Alliston aquifer is less than 13,000 years old; however, older groundwater in the range of 15,000–23,000 years is also present in the aquifer. This paper demonstrates that 14C ages calculated using NETPATH, incorporating the effects of methanogenesis on the carbon pools, provide reasonable groundwater ages that were not possible by other isotopic methods.

Water Resources Research↗

USGS2010

Numerical simulation of steady state three-dimensional groundwater flow near lakes

Numerical simulation of three-dimensional groundwater flow near lakes shows that the continuity of the boundary encompassing the local groundwater flow system associated with a lake is the key to understanding the interaction of a lake with the groundwater system. The continuity of the boundary can be determined by the presence of a stagnation zone coinciding with the side of the lake nearest the downgradient side of the groundwater system. For most settings modeled in this study the stagnation zone underlies the lakeshore, and it generally follows its curvature. The length of the stagnation zone is controlled by the geometry of the lake's drainage basin divide on the side of the lake nearest the downgradient side of the groundwater system. In the case of lakes that lose water to the groundwater system, three-dimensional modeling also allows for estimating the area of lake bed through which outseepage takes place. Analysis of the effects of size and lateral and vertical distribution of aquifers within the groundwater system on the outseepage from lakes shows that the position of the center point of the aquifer relative to the littoral zone on the side of the lake nearest the downgradient side of the groundwater system is a critical factor. If the center point is downslope from this part of the littoral zone, the local flow system boundary tends to be weak or outseepage occurs. If the center point is upslope from this littoral zone, the stagnation zone tends to be stronger (to have a higher head in relation to lake level), and outseepage is unlikely to occur.

Water Resources Research↗

USGS2020

Recent and projected precipitation and temperature changes in the Grand Canyon area with implications for groundwater resources

Groundwater is a critical resource in the Grand Canyon region, supplying nearly all water needs for residents and millions of visitors. Additionally, groundwater discharging at hundreds of spring locations in and near Grand Canyon supports important ecosystems in this mostly arid environment. The security of groundwater supplies is of critical importance for both people and ecosystems in the region and the potential for changes to groundwater systems from projected climate change is a cause for concern. In this study, we analyze recent historical and projected precipitation and temperature data for the Grand Canyon region. Projected climate scenarios are then used in Soil Water Balance groundwater infiltration simulations to understand the state-of-the-science on projected changes to groundwater resources in the area. Historical climate data from 1896 through 2019 indicate multi-decadal cyclical patterns in both precipitation and temperature for most of the time period. Since the 1970s, however, a significant rising trend in temperature is observed in the area. All 10-year periods since 1993 are characterized by both below average precipitation and above average temperature. Downscaled and bias-corrected precipitation and temperature output from 97 CMIP5 global climate models for the water-year 2020–2099 time period indicate projected precipitation patterns similar to recent historical (water-year 1951–2015) data. Projected temperature for the Grand Canyon area, however, is expected to rise by as much as 3.4 °C by the end of the century, relative to the recent historical average. Integrating the effects of projected precipitation and temperature changes on groundwater infiltration, simulation results indicate that > 76% of future decades will experience average potential groundwater infiltration less than that of the recent historical period.

Arizona, Utah↗

USGS2024

Declining groundwater storage expected to amplify mountain streamflow reductions in a warmer world

Groundwater interactions with mountain streams are often simplified in model projections, potentially leading to inaccurate estimates of streamflow response to climate change. Here, using a high-resolution, integrated hydrological model extending 400 m into the subsurface, we find groundwater an important and stable source of historical streamflow in a mountainous watershed of the Colorado River. In a warmer climate, increased forest water use is predicted to reduce groundwater recharge resulting in groundwater storage loss. Losses are expected to be most severe during dry years and cannot recover to historical levels even during simulated wet periods. Groundwater depletion substantially reduces annual streamflow with intermittent conditions predicted when precipitation is low. Expanding results across the region suggests groundwater declines will be highest in the Colorado Headwater and Gunnison basins. Our research highlights the tight coupling of vegetation and groundwater dynamics and that excluding explicit groundwater response to warming may underestimate future reductions in mountain streamflow.

Nature Water↗

USGS2009

The application of an analytic element model to investigate groundwater-lake interactions at Pretty Lake, Wisconsin

Pretty Lake is a 64 acre, sandy-bottomed groundwater flow-through lake that has a history of hydrologic disturbance. Residents and regulators require a better understanding of lake-groundwater interaction to develop measures to protect the lake's hydrologic system and water quality. A groundwater flow model was constructed as a tool to synthesize field data collected at the site, delineate recharge areas that supply groundwater to the lake, and predict die effect of dredging an adjacent drainage ditch. The one layer, two-dimensional steady-state areal model used analytic element (AE) methods because they are quick to apply and include sophisticated simulation of groundwater-surface water interaction. The model calibrated well to groundwater heads (mean absolute difference = 0.05 m), lake stage (within 0.05 m) and ditch fluxes (mean absolute difference = 0.0023 m 3 ·s −1 ). Model results showed that a single 1000 m wide recharge area supplies all the groundwater inflow to the lake. In addition, the model predicted that dredging an adjacent ditch by 3.0 m would lower the lake level by 0.31 m. The analytic element model was verified using a widely accepted finite-difference (FD) code; differences were less than ±0.015 m near die lake area and reached a maximum of 0.08 m at far corners of the FD grid. These differences are likely a result of die nodal interpolation inherent to FD techniques and error associated with applying a discrete boundary to die AE infinite aquifer. Although developed recently, AE methods have great potential to aid characterizations of groundwater-lake systems.

Wisconsin↗

USGS2021

A basin-scale approach to estimating recharge in the desert: Anza-Cahuilla groundwater basin, CA

The Anza-Cahuilla groundwater basin located mainly in the semi-arid headwaters of the Santa Margarita River watershed in southern California is the principle source of groundwater for a rural disadvantaged community and two Native American Tribes, the Ramona Band of Cahuilla and the Cahuilla. Groundwater in the study area is derived entirely from precipitation and managing groundwater sustainably requires an accurate assessment of the water balance components, yet long-term estimates do not exist. Demand for groundwater in the region has increased and groundwater quality has decreased due to population growth and increased irrigated cropland. To characterize monthly long-term natural recharge and runoff estimates, a physically-based water balance model (Basin Characterization Model) was locally calibrated and validated using nearby streamgages and published estimates of climatic and hydrologic variables. The average modeled annual recharge and runoff from 1981 to 2010 was 5.4 × 10 6 and 1.2 × 10 7 m 3 , respectively, for the study area. Recharge and runoff do not reliably occur in large amounts every year and recharge rarely occurs in the groundwater basin footprint. These long-term estimates can be used by water managers, stakeholders, and Native American Tribes to develop plans for sustainable management of future water resources, and as inputs to a three-dimensional groundwater model.

California↗

USGS2007

Monitoring and source tracking of tetracycline resistance genes in lagoons and groundwater adjacent to swine production facilities over a 3-year period

To monitor the dissemination of resistance genes into the environment, we determined the occurrence of tetracycline resistance (Tcr) genes in groundwater underlying two swine confinement operations. Monitoring well networks (16 wells at site A and 6 wells at site C) were established around the lagoons at each facility. Groundwater (n = 124) and lagoon (n = 12) samples were collected from the two sites at six sampling times from 2000 through 2003. Total DNA was extracted, and PCR was used to detect seven Tcr genes [tet(M), tet(O), tet(Q), tet(W), tet(C), tet(H), and tet(Z)]. The concentration of Tcr genes was quantified by real-time quantitative PCR. To confirm the Tcr gene source in groundwater, comparative analysis of tet(W) gene sequences was performed on groundwater and lagoon samples. All seven Tcr genes were continually detected in groundwater during the 3-year monitoring period at both sites. At site A, elevated detection frequency and concentration of Tcr genes were observed in the wells located down-gradient of the lagoon. Comparative analysis of tet(W) sequences revealed that the impacted groundwater contained gene sequences almost identical (99.8% identity) to those in the lagoon, but these genes were not found in background libraries. Novel sequence clusters and unique indigenous resistance gene pools were also found in the groundwater. Thus, antibiotic resistance genes in groundwater are affected by swine manure, but they are also part of the indigenous gene pool. Copyright ?? 2007, American Society for Microbiology. All Rights Reserved.

Applied and Environmental Microbiology↗