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At least 721 records · Page 40Linked to original sources

USGS2019

India National Gas Hydrate Program Expedition 02 summary of scientiﬁc results: Numerical simulation of reservoir response to depressurization

The India National Gas Hydrate Program Expedition 02 (NGHP-02) discovered gas hydrate at high saturation in sand reservoirs at several sites in the deepwater Bay of Bengal. To assess the potential response of those deposits to scientific depressurization experiments, comprehensive geologic models were constructed to enable numerical simulation for two sites. Both sites (NGHP-02-09 and NGHP-02-16) feature thick sequences of thinly-interbedded reservoir and non-reservoir facies at sub-seafloor depths of less than 300 m and sub-sea depths of 2,400 m or more. These settings pose significant challenges to current modeling capabilities. First, the thinly-bedded reservoir architecture complicates the determination of basic reservoir parameters from both log and core data due to measurement resolution issues. Secondly, the fine-scale variation in sediment properties imparts great contrasts in key parameters over very short distances, creating high gradients at multiple scales and varying orientations that necessitate careful design of high-definition simulation grids. Thirdly, the deposits include internal sources of water, as well as a range of complex boundary conditions, including variable permeability within the overlying mud-rich “seals”, that complicate reservoir depressurization. Lastly, because of the unique combination of great water depth and relatively shallow sub-seafloor depth, models designed to maximize the dissociation rate impose large pressure drawdowns on relatively low-strength sediments. This condition renders the proper evaluation and integration of the geomechanical response to hydrate dissociation critical. In this report, we review the history of gas hydrate reservoir simulation, discuss methods for creating geologic input models, and summarize the key findings and implications of the collaborative NGHP-02 numerical simulation effort. Together, the studies confirm the viability of the modeled accumulations for scientific testing and identify key challenges related to the selection of specific test sites and the design of test wells.

Journal of Marine and Petroleum Geology↗

USGS2020

Unfamiliar territory: Emerging themes for ecological drought research and management

Novel forms of drought are emerging globally, due to climate change, shifting teleconnection patterns, expanding human water use, and a history of human influence on the environment that increases the probability of transformational ecological impacts. These costly ecological impacts cascade to human communities, and understanding this changing drought landscape is one of today’s grand challenges. By using a modified horizon-scanning approach that integrated scientists, managers, and decision-makers, we identified the emerging issues in ecological drought that represent key challenges to timely and effective responses. Here we review the themes that most urgently need attention, including novel drought conditions, the potential for transformational drought impacts, and the need for anticipatory drought management. This horizon scan and review provides a roadmap to facilitate the research and management innovations that will support forward-looking, co-developed approaches to reduce the risk of drought to our socio-ecological systems during the 21 st century.

One Earth↗

USGS2024

Re-evaluating Marine Isotope Stage 5a paleo-sea-level trends from across the Florida Keys reef tract

Unraveling how Global Mean Sea Level (GMSL) fluctuated during past warm periods can improve our understanding of linkages between sea-level fluctuations, orbital forcing, and ice-sheet dynamics. Current estimates of GMSL for Marine Isotope Stages (MIS) 5a and 5c — two warm intervals following the relatively well-documented MIS 5e — contain meters of uncertainty and fewer data due to several challenges. These challenges include concealment of datable in-situ coral facies by MIS 1 deposits and inaccessibility due to submergence by modern sea level. We present a comprehensive dataset based on U–Th dating and stratigraphic correlation of 23 cores totaling over 170 m of recovered coral-reef deposits across the tectonically stable Florida Keys Reef Tract (FKRT). Following detailed facies descriptions, 34 in-situ, minimally altered aragonitic coral samples (≤2.7% calcite) below the Holocene-Pleistocene boundary were targeted for U–Th geochronology. Fourteen closed-system coral U–Th ages from MIS 5a include the commonly used sea-level indicator Acropora palmata , but also the massive coral taxa Pseudodiploria strigosa, Siderastrea siderea, Orbicella spp., and Porites astreoides . Dating yielded ages in the range of 88–81 ka (average 2σ uncertainty of less than 200 years). These ages suggest MIS 5a reef initiation at ∼88 ka BP, a peak near 83 ka with minimum elevations between −6.0 ± 0.5 and −5.6 ± 0.5 m MSL (2σ uncertainty and subsidence-corrected), and reef termination and sea-level fall by ∼81 ka BP. Notably, the range of peak MIS 5a relative sea-level estimates of −6.5 to −5.1 m MSL are more than 2 m shallower (higher) than previous estimates of −11 to −9 m. Our higher resolution regional sea-level reconstruction across four subregions of the Florida Keys reef tract aligns with changes in July insolation at 65° N: a trend that most other records, such as deep-sea sediments, do not have the accuracy and precision to resolve. Three massive coral samples from MIS 5c, consisting of Pseudodiploria clivosa , and Orbicella spp., yielded ages in the range of 104 to 99 ka (average 2σ uncertainty less than 200 years); however, because only one sample met the closed-system criteria, our ability to estimate MIS 5c sea level is relatively limited. More empirical estimates of sea-level from the MIS 5a and MIS 5c intervals based on numerical dating of reliable local sea-level constraints are critical for GMSL calculations and relating changes in sea-level amplitude and timing to global ice volume modeling and glacio-isostatic effects, all of which can improve predictions of future sea-level changes in coastal regions.

Florida↗

USGS2013

Lateglacial and Holocene climate, disturbance and permafrost peatland dynamics on the Seward Peninsula, western Alaska

Northern peatlands have accumulated large carbon (C) stocks, acting as a long-term atmospheric C sink since the last deglaciation. How these C-rich ecosystems will respond to future climate change, however, is still poorly understood. Furthermore, many northern peatlands exist in regions underlain by permafrost, adding to the challenge of projecting C balance under changing climate and permafrost dynamics. In this study, we used a paleoecological approach to examine the effect of past climates and local disturbances on vegetation and C accumulation at a peatland complex on the southern Seward Peninsula, Alaska over the past ∼15 ka (1 ka = 1000 cal yr BP). We analyzed two cores about 30 m apart, NL10-1 (from a permafrost peat plateau) and NL10-2 (from an adjacent thermokarst collapse-scar bog), for peat organic matter (OM), C accumulation rates, macrofossil, pollen and grain size analysis. A wet rich fen occurred during the initial stages of peatland development at the thermokarst site (NL10-2). The presence of tree pollen from Picea spp. and Larix laricinia at 13.5–12.1 ka indicates a warm regional climate, corresponding with the well-documented Bølling–Allerød warm period. A cold and dry climate interval at 12.1–11.1 ka is indicated by the disappearance of tree pollen and increase in Poaceae pollen and an increase in woody material, likely representing a local expression of the Younger Dryas (YD) event. Following the YD, the warm Holocene Thermal Maximum (HTM) is characterized by the presence of Populus pollen, while the presence of Sphagnum spp. and increased C accumulation rates suggest high peatland productivity under a warm climate. Toward the end of the HTM and throughout the mid-Holocene a wet climate-induced several major flooding disturbance events at 10 ka, 8.1 ka, 6 ka, 5.4 ka and 4.7 ka, as evidenced by decreases in OM, and increases in coarse sand abundance and aquatic fossils (algae Chara and water fleas Daphnia ). The initial peatland at permafrost site (NL10-1) is characterized by rapid C accumulation (66 g C m −2 yr −1 ), high OM content and a peak in Sphagnum spp. at 5.8–4.6 ka, suggesting the lack of permafrost. A transition to extremely low C accumulation rates of 6.3 g C m −2 yr −1 after 4.5 ka at this site suggests the onset of permafrost aggradation, likely in response to Neoglacial climate cooling as documented across the circum-Arctic region. A similar decrease in C accumulation rates also occurred at non-permafrost site NL10-2. Time-weighted C accumulation rates are 21.8 g C m −2 yr −1 for core NL10-1 during the last ∼6.5 ka and 14.8 g C m −2 yr −1 for core NL10-2 during the last ∼15 ka. Evidence from peat-core analysis and historical aerial photographs shows an abrupt increase in Sphagnum spp. and decrease in area of thermokarst lakes over the last century, suggesting major changes in hydrology and ecosystem structure, likely due to recent climate warming. Our results show that the thermokarst–permafrost complex was much more dynamic with high C accumulation rates under warmer climates in the past, while permafrost was stabilized and C accumulation slowed down following the Neoglacial cooling in the late Holocene. Furthermore, permafrost presence at local scales is controlled by both regional climate and site-specific factors, highlighting the challenge in projecting responses of permafrost peatlands and their C dynamics to future climate change.

Alaska↗

USGS2017

New zircon (U-Th)/He and U/Pb eruption age for the Rockland tephra, western USA

Eruption ages of a number of prominent Quaternary volcanic deposits remain inaccurately and/or imprecisely constrained, despite their importance as regional stratigraphic markers in paleo-environment reconstruction and as evidence of climate-altering eruptions. Accurately dating volcanic deposits presents challenging analytical considerations, including poor radiogenic yield, scarcity of datable minerals, and contamination of crystal populations by magma, eruption, and transport processes. One prominent example is the Rockland tephra, which erupted from the Lassen Volcanic Center in the southern Cascade arc. Despite a range in published eruption ages from 0.40 to 0.63 Ma, the Rockland tephra is extensively used as a marker bed across the western United States. To more accurately and precisely constrain the age of the Rockland tephra-producing eruption, we report U/Pb crystallization dates from the outermost ∼2 μm of zircon crystal faces (surfaces) using secondary ion mass spectrometry (SIMS). Our new weighted mean 238 U/ 206 Pb age for Rockland tephra zircon surfaces is 0.598 ± 0.013 Ma (2σ) and MSWD = 1.11 (mean square weighted deviation). As an independent test of the accuracy of this age, we obtained new (U-Th)/He dates from individual zircon grains from the Rockland tephra, which yielded a weighted mean age of 0.599 ± 0.012 Ma (2σ, MSWD = 5.13). We also obtained a (U-Th)/He age of 0.628 ± 0.014 Ma (MSWD = 1.19) for the Lava Creek Tuff member B, which was analyzed as a secondary standard to test the accuracy of the (U-Th)/He technique for Quaternary tephras, and to evaluate assumptions made in the model-age calculation. Concordance of new U/Pb and (U-Th)/He zircon ages reinforces the accuracy of our preferred Rockland tephra eruption age, and confirms that zircon surface dates sample zircon growth up to the time of eruption. We demonstrate the broad applicability of coupled U/Pb zircon-surface and single-grain zircon (U-Th)/He geochronology to accurate dating of Quaternary tephra, and highlight the challenges and opportunities of this technique.

Quaternary Science Reviews↗

USGS2022

Streamflow reconstructions from tree rings and variability in drought and surface water supply for the Milk and St. Mary River basins

The Milk and St. Mary Rivers are international waterways straddling the United States and Canada and traversing four Tribal Nations before draining into the Missouri and South Saskatchewan Rivers respectively. Management of water resources in the region is challenged by the complexity of stakeholder interests, the limitations of existing management infrastructure, and by a limited characterization of the long-term streamflow and hydroclimatic variability across the area. We used existing records of natural streamflow to investigate the relationships between seasonal climate variability and differences in the timing and volume of flow from the headwaters to the prairie tributaries. Then, using a network of tree-ring chronologies to reconstruct records of past streamflow, we assessed whether drought risk relates to these sub-basin specific differences and if drought events experienced during the observational period are representative of those that have occurred over the long-term. Observed climate-flow relationships suggest that outside of the mountain headwaters, where precipitation dominates the hydrograph, streamflow variability on lower reaches of the Milk River is particularly sensitive to winter temperatures. This sensitivity was reflected by severe drought conditions over the prairies during the 2000s, implying potentially large future flow reductions with warming. The streamflow reconstructions show sub-basin specific drought risks that also imply greater temperature driven drought severities across the prairie tributaries. Within the mountain and foothill sub-basins numerous past drought episodes exceed the magnitude and duration of observational period events, which implies the potential for future water supply management challenges stemming from severe, long-duration droughts coupled with the negative hydrologic effects of warmer temperatures.

Montana↗

USGS2022

Monitoring for adaptive management of burned sagebrush-steppe rangelands: addressing variability and uncertainty on the 2015 Soda Megafire

• Use of adaptive management supported by robust monitoring is vital to solving severe rangeland problems, such as the exotic annual grass invasion and fire cycle in sagebrush-steppe rangelands. • Uncertainty in post-fire plant-community composition and plant response to treatments poses a challenge to land management and research but can be addressed with a high density of observations over short time frames. • The monitoring for adaptive management of the 2015 Soda Megafire area (113,000 Ha) sampled up to 2000 observation plots in each of five post-fire years, and provided important insights on challenges, solutions, and insights that can be applied to monitoring future burned areas.

Idaho, Oregon↗

USGS2016

Conserving the Greater Sage-grouse: A social-ecological systems case study from the California-Nevada region

The Endangered Species Act (ESA) continues to serve as one of the most powerful and contested federal legislative mandates for conservation. In the midst of heated debates, researchers, policy makers, and conservation practitioners champion the importance of cooperative conservation and social-ecological systems approaches, which forge partnerships at multiple levels and scales to address complex ecosystem challenges. However, few real-world examples exist to demonstrate how multifaceted collaborations among stakeholders who share a common goal of conserving at-risk species may be nested within a systems framework to achieve social and ecological goals. Here, we present a case study of Greater Sage-grouse (Centrocercus urophasianus) conservation efforts in the “Bi-State” region of California and Nevada, United States. Using key-informant interviews, we explored dimensions and drivers of this landscape-scale conservation effort. Three themes emerged from the interviews, including 1) ESA action was transformed into opportunity for system-wide conservation; 2) a diverse, locally based partnership anchored collaboration and engagement across multiple levels and scales; and 3) best-available science combined with local knowledge led to “certainty of effectiveness and implementation”—the criteria used by the US Fish and Wildlife Service to evaluate conservation efforts when making listing decisions. Ultimately, collaborative conservation through multistakeholder engagement at various levels and scales led to proactive planning and implementation of conservation measures and precluded the need for an ESA listing of the Bi-State population of Greater Sage-grouse. This article presents a potent example of how a systems approach integrating policy, management, and learning can be used to successfully overcome the conflict-laden and “wicked” challenges that surround at-risk species conservation.

California, Nevada↗

USGS2022

Bridging the gap between spatial modeling and management of invasive annual grasses in the imperiled sagebrush biome

Invasions of native plant communities by non-native species present major challenges for ecosystem management and conservation. Invasive annual grasses such as cheatgrass, medusahead, and ventenata are pervasive and continue to expand their distributions across imperiled sagebrush-steppe communities of the western United States. These invasive grasses alter native plant communities, ecosystem function, and fire regimes, threatening sagebrush ecosystem persistence. Spatial data describing the distribution and abundance of invasive species are often used by resource managers to identify, target, and determine needed interventions. However, there are challenges associated with translating these datasets into management actions. We conducted a review of available spatial products to assess advances in, and barriers to, applying contemporary model-based maps to support rangeland management. We found dozens of regional data products describing cheatgrass or annual herbaceous cover and few maps describing ventenata or medusahead. Over the past decade, IAG spatial data increased in spatial and temporal resolution and increasingly used response variables that indicate the severity of infestation such as percent cover. Despite improvements, use of such data is limited by the time required to find, compare, understand, and translate model-based maps into management strategy. There is also a need for products with higher spatial resolution and accuracy. In collaboration with a multipartner stakeholder group, we identified key considerations that guide selection of IAG spatial data products for use by land managers and other users. On the basis of these considerations, we discuss issues that contribute to a research-implementation gap between users and product developers and suggest future directions for improved development of management-ready spatial products.

Rangeland Ecology & Management↗

USGS2016

Perspectives on monitoring gradual change across the continuity of Landsat sensors using time-series data

There are many types of changes occurring over the Earth's landscapes that can be detected and monitored using Landsat data. Here we focus on monitoring “within-state,” gradual changes in vegetation in contrast with traditional monitoring of “abrupt” land-cover conversions. Gradual changes result from a variety of processes, such as vegetation growth and succession, damage from insects and disease, responses to shifts in climate, and other factors. Despite the prevalence of gradual changes across the landscape, they are largely ignored by the remote sensing community. Gradual changes are best characterized and monitored using time-series analysis, and with the successful launch of Landsat 8 we now have appreciable data continuity that extends the Landsat legacy across the previous 43 years. In this study, we conducted three related analyses: (1) comparison of spectral values acquired by Landsats 7 and 8, separated by eight days, to ensure compatibility for time-series evaluation; (2) tracking of multitemporal signatures for different change processes across Landsat 5, 7, and 8 sensors using anniversary-date imagery; and (3) tracking the same type of processes using all available acquisitions. In this investigation, we found that data representing natural vegetation from Landsats 5, 7, and 8 were comparable and did not indicate a need for major modification prior to use for long-term monitoring. Analyses using anniversary-date imagery can be very effective for assessing long term patterns and trends occurring across the landscape, and are especially good for providing insights regarding trends related to long-term and continuous trends of growth or decline. We found that use of all available data provided a much more comprehensive level of understanding of the trends occurring, providing information about rate, duration, and intra- and inter-annual variability that could not be readily gleaned from the anniversary date analyses. We observed that using all available clear Landsat 5–8 observations with the new Continuous Change Detection and Classification (CCDC) algorithm was very effective for illuminating vegetation trends. There are a number of potential challenges for assessing gradual changes, including atmospheric impacts, algorithm development and visualization of the changes. One of the biggest challenges for studying gradual change will be the lack of appropriate data for validating results and products.

Remote Sensing of Environment↗

USGS2021

A novel automatic phenology learning (APL) method of training sample selection using multiple datasets for time-series land cover mapping

The long record of Landsat imagery, which is the cornerstone of Earth observation, provides an opportunity to monitor land use and land cover (LULC) change and understand the interactions between the climate and earth system through time. A few change detection algorithms such as Continuous Change Detection and Classification (CCDC) have been developed to utilize all available Landsat images for change detection and characterization at local or global scales. However, the reliable, rapid, and reproducible collection of training samples have become a challenge for time series land cover classification at a large scale. To meet the challenge, we proposed an automatic phenology learning (APL) method with the assumption that the temporal profiles of samples within the same land cover type are the same or similar at a local scale to generate evenly distributed training samples automatically. We designed the method to build land cover patterns for each category based on consensus samples derived from multiple existing scientific datasets including LANDFIRE's (LF) Existing Vegetation Type (EVT), USGS National Land Cover Database (NLCD), National Agricultural Statistics Service (NASS) Cropland Data Layer (CDL), and National Wetlands Inventory (NWI). Then we calculated the Time-Weighted Dynamic Time Warping (twDTW) distance between any undefined samples and land cover patterns in the same geographical region as prior knowledge. Finally, we selected the optimal land cover category for each undefined sample from the land cover products based on the designed criteria iteratively using the twDTW distance as an indicator. The method was applied in the footprint of 10 selected Landsat Analysis Ready Data (ARD) tiles in the eastern and western conterminous United States (CONUS) to produce annual land cover maps from 1985 to 2017. The accuracy assessment and visual comparison revealed that the APL method can generate reliable training samples without any manual interpretation, producing better land cover results especially for the grass/shrub and wetland land cover classes. Applying the APL method, the overall accuracy of the annual land cover maps was improved by 2% over the accuracy of Land Change Monitoring, Assessment, and Projection (LCMAP) Collection 1.0 Science Products in the research regions. Our results also indicate that the APL method provides an approach for best use of different land cover products and meets the requirement of intensive sampling for training data collection.

Remote Sensing of Environment↗

USGS2026

Advances in volcano monitoring driven by the first decade of Sentinel-1 observations

Sentinel-1 has transformed how satellite radar data (SAR and InSAR) are used in volcanology. The systematic, long-term archive and open-access policy means that volcano observatories and research organisations have invested in integrating Sentinel-1 datasets into their monitoring systems. We identify 233 high priority volcanoes and estimate that Sentinel-1 data has been used in peer-reviewed publications for 90 of them. We examine a global archive of 3.3 million automatically processed Sentinel-1 interferograms of volcanoes and use machine learning methods to identify eruptions and periods of unrest. We then review the ways in which InSAR data are being used in different contexts. At frequently erupting basaltic systems in Iceland, Hawaiʻi, the Galápagos , and Piton de la Fournaise, InSAR has become an effective monitoring tool and is integrated with other datasets and models to forecast magma pathways. For large explosive eruptions, deformation measurements often remain challenging, but SAR backscatter is increasingly used to map damaging flows and measure the changing shape of ocean islands. Sentinel-1's long archive provides critical baseline measurements that are vital for measuring slow deformation, capturing new periods of unrest and providing fresh insights into subsurface dynamics. Understanding the drivers of deformation remains challenging and typically relies on integration with external datasets. Future European Space Agency missions have the potential to improve both resolution and coverage providing an even richer dataset to further enhance global volcano monitoring

Erta Ale volcano↗

USGS2017

Improved accuracy in quantitative laser-induced breakdown spectroscopy using sub-models

Accurate quantitative analysis of diverse geologic materials is one of the primary challenges faced by the Laser-Induced Breakdown Spectroscopy (LIBS)-based ChemCam instrument on the Mars Science Laboratory (MSL) rover. The SuperCam instrument on the Mars 2020 rover, as well as other LIBS instruments developed for geochemical analysis on Earth or other planets, will face the same challenge. Consequently, part of the ChemCam science team has focused on the development of improved multivariate analysis calibrations methods. Developing a single regression model capable of accurately determining the composition of very different target materials is difficult because the response of an element’s emission lines in LIBS spectra can vary with the concentration of other elements. We demonstrate a conceptually simple “sub-model” method for improving the accuracy of quantitative LIBS analysis of diverse target materials. The method is based on training several regression models on sets of targets with limited composition ranges and then “blending” these “sub-models” into a single final result. Tests of the sub-model method show improvement in test set root mean squared error of prediction (RMSEP) for almost all cases. The sub-model method, using partial least squares regression (PLS), is being used as part of the current ChemCam quantitative calibration, but the sub-model method is applicable to any multivariate regression method and may yield similar improvements.

Spectrochimica Acta Part B: Atomic Spectroscopy↗

USGS2015

Emerging technologies to conserve biodiversity

Technologies to identify individual animals, follow their movements, identify and locate animal and plant species, and assess the status of their habitats remotely have become better, faster, and cheaper as threats to the survival of species are increasing. New technologies alone do not save species, and new data create new problems. For example, improving technologies alone cannot prevent poaching: solutions require providing appropriate tools to the right people. Habitat loss is another driver: the challenge here is to connect existing sophisticated remote sensing with species occurrence data to predict where species remain. Other challenges include assembling a wider public to crowdsource data, managing the massive quantities of data generated, and developing solutions to rapidly emerging threats.

Trends in Ecology and Evolution↗

USGS2024

The emerging invasive species and climate change lexicon

The rapid diversification of terminology associated with invasion ecology is a known barrier to effective communication and management. These challenges are magnified by the addition of terms and concepts related to climate-induced range-shifting taxa and/or changes to impacts. Further, institutional policies and terminologies for invasive species introduce new ambiguities when considering climate change. To alleviate communication and application challenges, we introduce a conceptual framework that organizes climate-related invasion terms, revealing ambiguities and gaps. Additionally, we illustrate how these ambiguities can affect management with four case studies and consider situations where resolution can improve policy and management outcomes. The framework can help users avoid inconsistent use of terminology, and prioritize when to address management and policy consequences related to associated terminological ambiguity.

Trends in Ecology and Evolution↗

USGS2006

Protective immunity and lack of histopathological damage two years after DNA vaccination against infectious hematopoietic necrosis virus in trout

The DNA vaccine pIHNw-G encodes the glycoprotein of the fish rhabdovirus infectious hematopoietic necrosis virus (IHNV). Vaccine performance in rainbow trout was measured 3, 6, 13, 24, and 25 months after vaccination. At three months all fish vaccinated with 0.1 μg pIHNw-G had detectable neutralizing antibody (NAb) and they were completely protected from lethal IHNV challenge with a relative percent survival (RPS) of 100% compared to control fish. Viral challenges at 6, 13, 24, and 25 months post-vaccination showed protection with RPS values of 47–69%, while NAb seroprevalence declined to undetectable levels. Passive transfer experiments with sera from fish after two years post-vaccination were inconsistent but significant protection was observed in some cases. The long-term duration of protection observed here defined a third temporal phase in the immune response to IHNV DNA vaccination, characterized by reduced but significant levels of protection, and decline or absence of detectable NAb titers. Examination of multiple tissues showed an absence of detectable long-term histopathological damage due to DNA vaccination.

Vaccine↗

USGS2018

Broad-spectrum antiviral JL122 blocks infection and inhibits transmission of aquatic rhabdoviruses

The aquaculture industry is growing rapidly to meet the needs for global protein consumption. Viral diseases in aquaculture are quite challenging due to lack of treatment options as well as limited injection-delivery vaccines, which are costly. Thus, water-immersion antiviral treatments are highly desirable. This study focused on broad-spectrum, light-activated antivirals that target the viral membrane (envelope) of viruses to prevent viral-cell membrane fusion, ultimately blocking viral entry into cells. Of the tested small-molecules, JL122, a new broad-spectrum antiviral previously unexplored against aquatic viruses, blocked infection of three aquatic rhabdoviruses (IHNV, VHSV and SVCV) in cell culture and in two live fish challenge models. Importantly, JL122 inhibited transmission of IHNV from infected to uninfected rainbow trout. Further, the effective antiviral concentrations were not toxic to cells or susceptible fish. These results show promise for JL122 to become an immersion treatment option for outbreaks of aquatic enveloped viral infections.

Virology↗

USGS2012

Analysis of host genetic diversity and viral entry as sources of between-host variation in viral load

Little is known about the factors that drive the high levels of between-host variation in pathogen burden that are frequently observed in viral infections. Here, two factors thought to impact viral load variability, host genetic diversity and stochastic processes linked with viral entry into the host, were examined. This work was conducted with the aquatic vertebrate virus, Infectious hematopoietic necrosis virus (IHNV), in its natural host, rainbow trout. It was found that in controlled in vivo infections of IHNV, a suggestive trend of reduced between-fish viral load variation was observed in a clonal population of isogenic trout compared to a genetically diverse population of out-bred trout. However, this trend was not statistically significant for any of the four viral genotypes examined, and high levels of fish-to-fish variation persisted even in the isogenic trout population. A decrease in fish-to-fish viral load variation was also observed in virus injection challenges that bypassed the host entry step, compared to fish exposed to the virus through the natural water-borne immersion route of infection. This trend was significant for three of the four virus genotypes examined and suggests host entry may play a role in viral load variability. However, high levels of viral load variation also remained in the injection challenges. Together, these results indicate that although host genetic diversity and viral entry may play some role in between-fish viral load variation, they are not major factors. Other biological and non-biological parameters that may influence viral load variation are discussed.

Virus Research↗