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USGS2012

Bathymetry and digital elevation models of Coyote Creek and Alviso Slough, South San Francisco Bay, California

In 2010, the U.S. Geological Survey (USGS), Pacific Coastal and Marine Science Center completed three cruises to map the bathymetry of the main channel and shallow intertidal mudflats in the southernmost part of south San Francisco Bay. The three surveys were merged to generate comprehensive maps of Coyote Creek (from Calaveras Point east to the railroad bridge) and Alviso Slough (from the bay to the town of Alviso) to establish baseline bathymetry prior to the breaching of levees adjacent to Alviso and Guadalupe Sloughs as part of the South Bay Salt Pond Restoration Project ( http://www.southbayrestoration.org ). Since 2010, the USGS has conducted fourteen additional surveys to monitor bathymetric change in this region as restoration progresses. The bathymetric surveys were conducted using the state-of-the-art research vessel R/V Parke Snavely outfitted with an interferometric sidescan sonar for swath mapping in extremely shallow water. This publication provides high-resolution bathymetric data collected by the USGS. For the 2010 baseline survey we have merged the bathymetry with aerial lidar data that were collected for the USGS during the same time period to create a seamless, high-resolution digital elevation model (DEM) of the study area. The series of bathymetric datasets are provided at 1 m resolution and the 2010 bathymetric/topographic DEM at 2 m resolution. The data are formatted as both X, Y, Z text files and ESRI Arc ASCII files that are accompanied by Federal Geographic Data Committee (FGDC) compliant metadata.

California↗

USGS2011

Geophysical data collected from the St. Clair River between Michigan and Ontario, Canada (2008-016-FA)

In 2008, the U.S. Geological Survey (USGS), Woods Hole Coastal and Marine Science Center (WHCMSC), in cooperation with the U.S. Army Corps of Engineers conducted a geophysical and sampling survey of the riverbed of the Upper St. Clair River between Port Huron, Mich., and Sarnia, Ontario, Canada. The objectives were to define the Quaternary geologic framework of the riverbed of the St. Clair River to evaluate the relationship between morphologic change of the riverbed and underlying stratigraphy. This report presents the geophysical and sample data collected from the St. Clair River, May 29-June 6, 2008, as part of the International Upper Great Lakes Study, a 5-year project funded by the International Joint Commission of the United States and Canada to examine whether physical changes in the St. Clair River are affecting water levels within upper Great Lakes, to assess regulation plans for outflows from Lake Superior, and to examine the potential effect of climate change on the Great Lakes water levels (http://www.iugls.org). This document makes available the data that were used in a separate report, U.S. Geological Survey Open-File Report 2009-1137, which detailed the interpretations of the Quaternary geologic framework of the region. This report includes a description of the high-resolution acoustic and sediment-sampling systems that were used to map the morphology, surficial sediment distribution, and underlying geology of the Upper St. Clair River during USGS field activity 2008-016-FA (http://quashnet.er.usgs.gov/cgi-bin/datasource/public_ds_info.pl?fa=2008-016-FA). Video and photographs of the riverbed were also collected and are included in this data release. Future analyses will be focused on substrate erosion and its effects on river-channel morphology and geometry. Ultimately, the International Upper Great Lakes Study will attempt to determine where physical changes in the St. Clair River affect water flow and, subsequently, water levels in the Upper Great Lakes.

Open-File Report↗

USGS2005

The distribution and abundance of Sphaeroma terebrans, a wood-boring isopod of red mangrove (Rhizophora mangle) habitat within Tampa Bay

This study was conducted to determine the distribution, abundance, and demography of a wood boring isopod, Sphaeroma terebrans Bate, 1866, within the prop roots of the red mangrove, Rhizophora mangle L., in eight sites within Tampa Bay, Florida. Sphaeroma terebrans in Tampa Bay displayed reproductive activity year-round and bay-wide synchrony in their density pattern. On average approximately 60% (range: 25%-86%) of the intertidal aerial roots surveyed were occupied by S. terebrans. Although infestation levels by S. terebrans in Tampa Bay were similar to that of more tropical regions, the distribution of S. terebrans was not continuous throughout the study sites. A substantially higher occurrence and density of S. terebrans was found in the northern compared to more southern study sites within the Bay. Additionally, some seemingly suitable areas of the bay (i.e., Pinellas Point, Skyway, Fort Desoto) were actually unoccupied on some dates. Although sites differed in the frequency with which roots were attacked, the density of burrows and isopods in an occupied root was similar, with most attacked roots containing 3-5 burrows. The results of a transplantation experiment indicated that neither abiotic factors nor substrate quality limit the burrowing capabilities or survival of adult S. terebrans in the areas where they are absent. Instead, dispersal limitation, linked with differential juvenile survival, most likely controls isopod distribution and abundance within Tampa Bay.

Bulletin of Marine Science↗

USGS2025

Prevalence of pelagic diatoms and harmful algae in tellinid bivalve diets during record low sea ice in the Pacific Arctic determined by DNA metabarcoding

Understanding changes at the base of the marine food web in the rapidly transforming Arctic is essential for predicting and evaluating ecosystem dynamics. The northern Bering Sea experienced record low sea ice in 2018, followed by the second lowest in 2019, highlighting the urgency of the issue for this region. In this study, we investigated the diet of the clam Macoma calcarea in the Pacific Arctic using DNA metabarcoding, employing 18S and rbcL markers to identify dietary components. Our findings revealed a strong dependence on pelagic diatoms, particularly Chaetoceros sp., with a near absence of ice algae in the clam diet. This pattern reflects the lack of lipid-rich ice algal production during these low sea ice events. Additionally, our analysis detected algae capable of producing harmful toxins, notably Alexandrium dinoflagellates, in the clam diet, underscoring the need for increased monitoring due to potential ecosystem and human health risks. This study demonstrates the utility of DNA metabarcoding in unraveling the complex dynamics of Arctic marine food webs and pelagic-benthic coupling, providing a glimpse of future conditions in a rapidly changing environment.

Bering Sea, Chukchi Sea↗

USGS2008

Forage fish of the Pacific Rim as revealed by diet of a piscivorous seabird: Synchrony and relationships with sea surface temperature

We tested the hypothesis of synchronous interannual changes in forage fish dynamics around the North Pacific Rim. To do this, we sampled forage fish communities using a seabird predator, the rhinoceros auklet ( Cerorhinca monocerata ), at six coastal study sites from Japan to California. We investigated whether take of forage fishes was related to local marine conditions as indexed by sea surface temperature (SST). SST was concordant across sites in the eastern Pacific, but inversely correlated between east and west. Forage fish communities consisted of anchovy ( Engraulis spp.), sandlance ( Ammodytes spp.), capelin ( Mallotus spp.), and juvenile rockfish ( Sebastes spp.), among others, and take of forage fish varied in response to interannual and possibly lower-frequency oceanographic variability. Take of primary forage species were significantly related to changes in SST only at the eastern sites. We found synchrony in interannual variation of primary forage fishes across several regions in the eastern Pacific, but no significant east–west correlations. Specifically in the Japan Sea, factors other than local SST or interannual variability may more strongly influence forage fishes. Predator diet sampling offers a fishery-independent, large-scale perspective on forage fish dynamics that may be difficult to obtain using conventional means of study.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2019

Comparison of physical to numerical mixing with different tracer advection schemes in estuarine environments

The numerical simulation of estuarine dynamics requires accurate prediction for the transport of tracers such as temperature and salinity. During the simulation of these processes, all numerical models introduce two kinds of tracer mixing: 1) by parameterizing the tracer eddy diffusivity through turbulence models leading to a source of physical mixing and 2) discretization of the tracer advection term that leads to numerical mixing. Both physical and numerical mixing vary with the choice of horizontal advection schemes, grid resolution, and time step. By simulating four idealized cases, this study compares physical and numerical mixing for three different tracer advection schemes. Idealized domains involving only physical and numerical mixing are used to verify the implementation of mixing terms by equating them to total tracer variance. Among the three horizontal advection schemes, the scheme that causes the least numerical mixing while maintaining a sharp front also results in larger physical mixing. Instantaneous spatial comparison of mixing components shows that physical mixing is dominant in regions of large vertical gradients while numerical mixing dominates at sharp fronts that contain large horizontal tracer gradients. In the case of estuaries, numerical mixing may dominate locally over physical mixing; however, the amount of volume integrated numerical mixing through the domain compared to integrated physical mixing remains relatively small for this particular modeling system.

Journal of Marine Science and Engineering↗

USGS2021

Loggerhead marine turtles (Caretta caretta) nesting at smaller sizes than expected in the Gulf of Mexico: Implications for turtle behavior, population dynamics, and conservation

Estimates of parameters that affect population dynamics, including the size at which individuals reproduce, are crucial for efforts aimed at understanding how imperiled species may recover from the numerous threats they face. In this study, we observed loggerhead marine turtles ( Caretta caretta ) nesting at three sites in the Gulf of Mexico at sizes assumed nonreproductive in this region (≤87 cm curved carapace length-notch [CCL-n]). These smaller individuals ranged from 74.0 to 86.9 cm CCL-n, and the proportion of smaller nesting loggerheads was 0.13 across three study sites: Gulf Shores, AL; Dry Tortugas National Park, Florida (FL); and Everglades National Park (ENP), FL. The greatest proportion of smaller nesters was observed at ENP at 0.24. Tracking data indicated that the smaller nesters migrated shorter distances and swam in shallower waters compared to the larger nesting loggerheads (>87 cm CCL-n) in our dataset. These results provide valuable information on two of the smallest subpopulations of NW Atlantic loggerheads and understudied ENP turtles. Our results have potential applications in the classification and interpretation of stranding limits and bycatch estimates, population modeling (e.g., stage durations and fecundity), and understanding threats and subpopulation recovery efforts for multiple subpopulations of this imperiled species.

Alabama, Florida↗

USGS2018

DEEP SEARCH: Deep sea exploration to advance research on coral/canyon/cold seep habitats

Launched in August 2017, Deep Sea Exploration to Advance Research on Coral/Canyon/Cold seep Habitats (DEEP SEARCH) is a multiyear, multi-agency study to characterize the deep-sea ecosystems of the US Mid- and South Atlantic (Figure 1). The study is funded through an interagency partnership between NOAA, the Bureau of Ocean Energy Management (BOEM), and the US Geological Survey, and it is sponsored by the National Oceanographic Partnership Program. DEEP SEARCH will spend four and a half years (from 2017 to 2021) researching the habitats of the US Atlantic to better understand the distribution of sensitive seafloor communities to inform potential offshore energy development and other deep-sea management needs.

Oceanography↗

USGS2015

Slipstream: an early Holocene slump and turbidite record from the frontal ridge of the Cascadia accretionary wedge off western Canada and paleoseismic implications

Slipstream Slump, a well-preserved 3 km wide sedimentary failure from the frontal ridge of the Cascadia accretionary wedge 85 km off Vancouver Island, Canada, was sampled during Canadian Coast Guard Ship (CCGS) John P. Tully cruise 2008007PGC along a transect of five piston cores. Shipboard sediment analysis and physical property logging revealed 12 turbidites interbedded with thick hemipelagic sediments overlying the slumped glacial diamict. Despite the different sedimentary setting, atop the abyssal plain fan, this record is similar in number and age to the sequence of turbidites sampled farther to the south from channel systems along the Cascadia Subduction Zone, with no extra turbidites present in this local record. Given the regional physiographic and tectonic setting, megathrust earthquake shaking is the most likely trigger for both the initial slumping and subsequent turbidity currents, with sediments sourced exclusively from the exposed slump face of the frontal ridge. Planktonic foraminifera picked from the resedimented diamict of the underlying main slump have a disordered cluster of 14 C ages between 12.8 and 14.5 ka BP. For the post-slump stratigraphy, an event-free depth scale is defined by removing the turbidite sediment intervals and using the hemipelagic sediments. Nine 14 C dates from the most foraminifera-rich intervals define a nearly constant hemipelagic sedimentation rate of 0.021 cm/year. The combined age model is defined using only planktonic foraminiferal dates and Bayesian analysis with a Poisson-process sedimentation model. The age model of ongoing hemipelagic sedimentation is strengthened by physical property correlations from Slipstream events to the turbidites for the Barkley Canyon site 40 km south. Additional modelling addressed the possibilities of seabed erosion or loss and basal erosion beneath turbidites. Neither of these approaches achieves a modern seabed age when applying the commonly used regional marine 14 C reservoir age of 800 years (marine reservoir correction Δ R = 400 years). Rather, the top of the core appears to be 400 years in the future. A younger marine reservoir age of 400 years (Δ R = 0 years) brings the top to the present and produces better correlations with the nearby Effingham Inlet paleo-earthquake chronology based only on terrestrial carbon requiring no reservoir correction. The high-resolution dating and facies analysis of Slipstream Slump in this isolated slope basin setting demonstrates that this is also a useful type of sedimentary target for sampling the paleoseismic record in addition to the more studied turbidites from submarine canyon and channel systems. The first 10 turbidites at Slipstream Slump were deposited between 10.8 and 6.6 ka BP, after which the system became sediment starved and only two more turbidites were deposited. The recurrence interval for the inferred frequent early Holocene megathrust earthquakes is 460 ± 140 years, compatible with other estimates of paleoseismic megathrust earthquake occurrence rates along the subduction zone.

Slipstream Slump↗

USGS2023

Monitoring population-level foraging distribution of a marine migratory species from land: Strengths and weaknesses of the isotopic approach on the Northwest Atlantic loggerhead turtle aggregation

Assessing the linkage between breeding and non-breeding areas has important implications for understanding the fundamental biology of and conserving animal species. This is a challenging task for marine species, and in sea turtles a combination of stable isotope analysis (SIA) and satellite telemetry has been increasingly used. The Northwest Atlantic (NWA) loggerhead ( Caretta caretta ) Regional Management Unit, one of the largest sea turtle populations in the world, provides an excellent opportunity to investigate key biological patterns as well as methodological aspects related to the use of stable isotopes to infer spatial distribution of turtles in foraging areas. We provide the first comprehensive assessment of the annual distribution of NWA adult female loggerheads among foraging areas and investigate the efficacy of various analytical approaches as well as the effect of sample size in these types of studies. A total of 5168 individual females were sampled from seven Management Units (MUs) between 2013-2018. We provide the first estimate of the proportion of females originating from each MU that uses each foraging area and show how this proportion varies over time. We also estimate the relative importance (in terms of number of turtles) of each foraging area to the overall loggerhead breeding aggregation nesting in Florida and in the NWA for each year of the study. The foraging area used by reproductively active females differs considerably across MUs. One of these, the Subtropical NWA, is by far the most important foraging area in terms of both number of individuals and genetic diversity, and therefore this region may be considered as a conservation priority. Through simulations, we show that limited sizes of sample groups (unknowns; training; priors) may result in false geographic differentiation and consequently mislead interpretations. We provide thresholds and methodological recommendations for future studies. This study establishes a fundamental baseline for monitoring the annual contribution of foraging area to a terrestrial-based breeding aggregation of a marine animal in a cost-effective way. This type of monitoring allows for early detection of changes in foraging distributions—a possible effect of climate change on marine ecosystems or of area-specific anthropogenic threats.

Frontiers in Marine Science↗

USGS2002

Place vs. time and vegetational persistence: A comparison of four tropical mires from the Illinois Basin during the height of the Pennsylvanian Ice Age

Coal balls were collected from four coal beds in the southeastern part of the Illinois Basin. Collections were made from the Springfield, Herrin, and Baker coals in western Kentucky, and from the Danville Coal in southwestern Indiana. These four coal beds are among the principal mineable coals of the Illinois Basin and belong to the Carbondale and Shelburn Formations of late Middle Pennsylvanian age. Vegetational composition was analyzed quantitatively. Coal-ball samples from the Springfield, Herrin, and Baker are dominated by the lycopsid tree Lepidophloios, with lesser numbers of Psaronius tree ferns, medullosan pteridosperms, and the lycopsid trees Synchysidendron and Diaphorodendron. This vegetation is similar to that found in the Springfield and Herrin coals elsewhere in the Illinois Basin, as reported in previous studies. The Danville coal sample, which is considerably smaller than the others, is dominated by Psaronius with the lycopsids Sigillaria and Synchysidendron as subdominants. Coal balls from the Springfield coal were collected in zones directly from the coal bed and their zone-by-zone composition indicates three to four distinct plant assemblages. The other coals were analyzed as whole-seam random samples, averaging the landscape composition of the parent mire environments. This analysis indicates that these coals, separated from each other by marine and terrestrial-clastic deposits, have essentially the same floristic composition and, thus, appear to represent a common species pool that persisted throughout the late Middle Pennsylvanian, despite changes in baselevel and climate attendant the glacial interglacial cyclicity of the Pennsylvanian ice age. Patterns of species abundance and diversity are much the same for the Springfield, Herrin, and Baker, although each coal, both in the local area sampled, and regionally, has its own paleobotanical peculiarities. Despite minor differences, these coals indicate a high degree of recurrence of assemblage and landscape organization. The Danville departs dramatically from the dominance-diversity composition of the older coals, presaging patterns of tree-fern and Sigillaria dominance of Late Pennsylvanian coals of the eastern United States, but, nonetheless, built on a species pool shared with the older coals. ?? 2002 Elsevier Science B.V. All rights reserved.

International Journal of Coal Geology↗

USGS2018

Rapid discovery of SNPs differentiating hatchery steelhead trout from ESA-listed natural-origin steelhead trout using a 57K SNP array

Natural-origin steelhead trout ( Oncorhynchus mykiss (Walbaum, 1792)) in the Pacific Northwest, USA, are threatened by a number of factors including habitat destruction, disease, decline in marine survival, and a potential erosion of genetic viability due to introgression from hatchery strains. Our major goal was to use a recently developed SNP array containing ∼57 000 SNPs to identify a subset of SNPs that differentiate hatchery and natural-origin populations. We analyzed 35 765 polymorphic SNPs in nine populations of steelhead trout sampled from Puget Sound, Washington, USA. We then conducted two outlier tests and found 360 loci that were candidates for divergent selection between hatchery and natural-origin populations (mean F CT = 0.29, maximum = 0.65) and 595 SNPs that were candidates for selection among natural-origin populations (mean F ST = 0.25, maximum = 0.51). Comparisons with a linkage map revealed that two chromosomes (Omy05 and Omy25) contained significantly more outliers than other chromosomes, suggesting that regions on Omy05 and Omy25 may be of adaptive significance. Our results highlight several advantages of the 57 000 SNP array as a tool for population and conservation genomics studies.

British Columbia, Washington↗

USGS2023

Introduction to the special section on seismoacoustics and seismoacoustic data fusion

A variety of geophysical hazards (e.g., volcanic activity, earthquakes, mass movements, marine storms, bolides) and anthropogenic sources (e.g., chemical and nuclear explosions, mining blasts, rocket launches) can release energy as mechanical waves in the ground, ocean, and atmosphere (Arrowsmith et al., 2010; Campus and Christie, 2009). Due to the mechanical coupling between a planetary body, its ocean, and its atmosphere, waves can propagate across these interfaces (Ben-Menahem and Singh, 1981) and carry information about the source and the media they propagated through. The field of seismoacoustics, driven by geophysical observations of both seismic and low-frequency acoustic (infrasound) waves, has several interdisciplinary applications. Observations of both seismic and infrasonic waves can be used to discriminate between atmospheric and subsurface events, such as sonic booms and earthquakes. Moreover, seismoacoustic analyses can provide useful information for the source characterization of shallow anthropogenic events, such as underground or surface explosions, volcanic, and tectonic events (e.g., Arrowsmith et al., 2020; Assink et al., 2016; de Groot-Hedlin and Hedlin, 2019; Matoza et al., 2009). Similarly, remote observations (e.g., on regional seismic and infrasonic arrays) can help monitor natural events such as volcanic eruptions and provide additional details about eruption dynamics. Recent works additionally suggest that infrasound can be used to discriminate between different volcanic processes (Watson et al., 2022). Finally, looking outwards, the study of seismo-acoustics has been a particularly valuable tool for planetary science (e.g., Krishnamoorthy et al., 2018; Martire et al., 2018; Krishnamoorthy et al., 2019; Martire et al., 2020; Garcia et al., 2020; Brissaud et al., 2021).

Bulletin of the Seismological Society of America↗

USGS1999

Geologic map of the Galaxias quadrangle (MTM 35217) of Mars

The Galaxias region (MTM 35217) is one of a series of 1:500,000-scale science study areas on Mars sponsored by NASA's Planetary Geology and Geophysics Program. Situated near the northern limit of lava flows associated with Elysium Mons, this region includes a mixture of volcanic and nonvolcanic terrains. The region is also of interest for the fluvial systems that originate along the distal margins of the Elysium lava flows. Resolution of Viking Orbiter images used to prepare the base map ranges from 40 to 160 m/pixel. High-resolution frames (40 to 80 m/pixel) are found in the southeastern part of the map area and along the north edge of the quadrangle, but over half the quadrangle is included in medium-resolution frames (150 m/pixel). Two 8 m/pixel, very high resolution scenes are available (see fig. 1). Interpretation is complicated by variable resolution and sun angles that vary from east to west illumination on different images. Mapping methods and principles are adapted from those developed for lunar photogeologic mapping by Shoemaker and Hackman (1962), refined by Wilhelms (1972), and successfully applied by many workers to a variety of planetary surfaces. Mapping units are distinguished by topography and texture and are ranked by relative age on the basis of superposition and transection relations. Material units are assigned to time-stratigraphic systems defined by Scott and Carr (1978) and Tanaka (1986). This area is included within earlier maps that used Mariner 9 images at 1:5,000,000 scale (Elston, 1979) and globally at 1:25,000,000 scale (Scott and Carr, 1978). Regional maps based on the much higher resolutions of Viking Orbiter allowed more detailed discrimination of materials by Greeley and Guest (1987) at 1:15,000,000 scale and Tanaka and others (1992) at 1:5,000,000 scale. Some map units on this 1:500,000-scale map correspond to, or are partially equivalent to, units on the larger scale maps of Greeley and Guest (1987) and Tanaka and others (1992). Established terminology is used where feasible, but the scale of this map requires that some new units be introduced and that some previous terminology be redefined. Photogeologic methods are limited; therefore, more than one geologic explanation is given for some material units that do not readily lend themselves to an unequivocal interpretation.

IMAP↗

USGS2014

Land-margin ecosystem hydrologic data for the coastal Everglades, Florida, water years 1996-2012

Mangrove forests and salt marshes dominate the landscape of the coastal Everglades (Odum and McIvor, 1990). However, the ecological effects from potential sea-level rise and increased water flows from planned freshwater Everglades restoration on these coastal systems are poorly understood. The National Park Service (NPS) proposed the South Florida Global Climate Change Project (SOFL-GCC) in 1990 to evaluate climate change and the effect from rising sea levels on the coastal Everglades, particularly at the marsh/mangrove interface or ecotone (Soukup and others, 1990). A primary objective of SOFL-GCC project was to monitor and synthesize the hydrodynamics of the coastal Everglades from the upstream freshwater marsh to the downstream estuary mangrove. Two related hypotheses were set forward (Nuttle and Cosby, 1993): 1. There exists hydrologic conditions (tide, local rainfall, and upstream water deliveries), which characterize the location of the marsh/mangrove ecotone along the marine and terrestrial hydrologic gradient; and 2. The marsh/mangrove ecotone is sensitive to fluctuations in sea level and freshwater inflow from inland areas. Hydrologic monitoring of the SOFL-GCC network began in 1995 after startup delays from Hurricane Andrew (August 1992) and organizational transfers from the NPS to the National Biological Survey (October 1993) and the merger with the U.S. Geological Survey (USGS) Biological Research Division in 1996 (Smith, 2004). As the SOFL-GCC project progressed, concern by environmental scientists and land managers over how the diversion of water from Everglades National Park would affect the restoration of the greater Everglades ecosystem. Everglades restoration scenarios were based on hydrodynamic models, none of which included the coastal zone (Fennema and others, 1994). Modeling efforts were expanded to include the Everglades coastal zone (Schaffranek and others, 2001) with SOFL-GCC hydrologic data assisting the ecological modeling needs. In 2002, as a response for a more interdisciplinary science approach to understanding the coastal Everglades ecological system, the SOFL-GCC hydrology project was integrated into the “Dynamics of Land-Margin Ecosystems: Historical Change, Hydrology, Vegetation, Sediment, and Climate” study (Smith and others, 2002). Data from the ongoing study has been useful in providing an empirical hydrologic baseline for the greater Everglades ecosystem restoration science and management needs. The hydrology network consisted of 13 hydrologic gaging stations installed in the southwestern coastal region of Everglades National Park along three transects: Shark River (Shark or SH) transect, Lostmans River (Lostmans or LO) transect, and Chatham River (Chatham or CH) transect (fig. 1). There were five paired surface-water/groundwater gaging stations on the Shark transect (SH1, SH2, SH3, SH4, and SH5) and one stage gaging station (BSC) in the Big Sable Creek; four paired surface-water/groundwater gaging stations on the Lostmans transect (LO1, LO2, LO3, and LO4); and three paired surface-water/groundwater gaging stations on the Chatham transect (CH1, CH2, and CH3). Both surface-water and groundwater levels, salinities, and temperatures were monitored at the paired gaging stations. Rainfall was recorded at marsh and open canopy gaging stations. This report details the study introduction, method, and description of data collected, which are accessible through the final instantaneous hydrologic dataset stored in the USGS South Florida Information Access (SOFIA) South Florida Hydrology Database website, http://sofia.usgs.gov/exchange/sfl_hydro_data/location.html#brdlandmargin .

Florida↗

USGS2012

A generalized model for estimating the energy density of invertebrates

Invertebrate energy density (ED) values are traditionally measured using bomb calorimetry. However, many researchers rely on a few published literature sources to obtain ED values because of time and sampling constraints on measuring ED with bomb calorimetry. Literature values often do not account for spatial or temporal variability associated with invertebrate ED. Thus, these values can be unreliable for use in models and other ecological applications. We evaluated the generality of the relationship between invertebrate ED and proportion of dry-to-wet mass (pDM). We then developed and tested a regression model to predict ED from pDM based on a taxonomically, spatially, and temporally diverse sample of invertebrates representing 28 orders in aquatic (freshwater, estuarine, and marine) and terrestrial (temperate and arid) habitats from 4 continents and 2 oceans. Samples included invertebrates collected in all seasons over the last 19 y. Evaluation of these data revealed a significant relationship between ED and pDM ( r 2 = 0.96, p < 0.0001), where ED (as J/g wet mass) was estimated from pDM as ED = 22,960pDM − 174.2. Model evaluation showed that nearly all (98.8%) of the variability between observed and predicted values for invertebrate ED could be attributed to residual error in the model. Regression of observed on predicted values revealed that the 97.5% joint confidence region included the intercept of 0 (−103.0 ± 707.9) and slope of 1 (1.01 ± 0.12). Use of this model requires that only dry and wet mass measurements be obtained, resulting in significant time, sample size, and cost savings compared to traditional bomb calorimetry approaches. This model should prove useful for a wide range of ecological studies because it is unaffected by taxonomic, seasonal, or spatial variability.

Freshwater Science↗

USGS2022

Temporal and spatial relationships of Yellowfin Tuna to deepwater petroleum platforms in the northern Gulf of Mexico

In 2006–2007, 110 Yellowfin Tuna Thunnus albacares were tagged with acoustic transmitters near deepwater oil platforms and one drillship in the northern Gulf of Mexico off the Mississippi River delta to determine the extent to which platforms act as fish aggregating devices (FADs). Vemco acoustic receivers were installed on six deepwater platforms to detect the presence of tagged individuals. Five of 12 Yellowfin Tuna captured in 2006 were detected in 2007, demonstrating multi-year presence in the region. Ninety Yellowfin Tuna were detected in 2007, resulting in 221 platform residencies and 32 single detections. Duration of residence at a platform was positively correlated with the platform's depth, and the number of transitions decreased with platform-to-platform distance. In total, 109 movements between platforms by 46 (51%) different individuals were detected, traveling distances of up to 98.2 km. Yellowfin Tuna displayed interactions with deepwater platforms in the northern Gulf of Mexico similar to their interactions with FADs and other studied geological features, by way of aggregating or using them as meeting points, landmarks, and stopovers within a movement corridor. The large number of oil and gas platforms located in the northern Gulf of Mexico may have a significant effect on distribution, retention, and migration of Yellowfin Tuna populations in this area of the gulf.

Louisiana↗

USGS2010

Decadal trends in marine reserves reveal differential rates of change in direct and indirect effects

Decadal-scale observations of marine reserves suggest that indirect effects on taxa that occur through cascading trophic interactions take longer to develop than direct effects on target species. Combining and analyzing a unique set of long-term time series of ecologic data in and out of fisheries closures from disparate regions, we found that the time to initial detection of direct effects on target species (+ or -SE) was 5.13 + or - 1.9 years, whereas initial detection of indirect effects on other taxa, which were often trait mediated, took significantly longer (13.1 + or - 2.0 years). Most target species showed initial direct effects, but their trajectories over time were highly variable. Many target species continued to increase, some leveled off, and others decreased. Decreases were due to natural fluctuations, fishing impacts from outside reserves, or indirect effects from target species at higher trophic levels. The average duration of stable periods for direct effects was 6.2 + or - 1.2 years, even in studies of more than 15 years. For indirect effects, stable periods averaged 9.1 + or - 1.6 years, although this was not significantly different from direct effects. Populations of directly targeted species were more stable in reserves than in fished areas, suggesting increased ecologic resilience. This is an important benefit of marine reserves with respect to their function as a tool for conservation and restoration.

Proceedings of the National Academy of Sciences↗