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USGS2010

Assessment and management of ecological integrity: Chapter 12

Assessing and understanding the impacts of human activities on aquatic ecosystems has long been a focus of ecologists, water resources managers, and fisheries scientists. While traditional fisheries management focused on single-species approaches to enhance fish stocks, there is a growing emphasis on management approaches at community and ecosystem levels. Of course, as fisheries managers shift their attention from narrow (e.g., populations) to broad organizational scales (e.g., communities or ecosystems), ecological processes and management objectives become more complex. At the community level, fisheries managers may strive for a fish assemblage that is complex, persistent, and resilient to disturbance. Aquatic ecosystem level objectives may focus on management for habitat quality and ecological processes, such as nutrient dynamics, productivity, or trophic interactions, but a long-term goal of ecosystem management may be to maintain ecological integrity. However, human users and social, economic, and political demands of fisheries management often result in a reduction of ecological integrity in managed systems, and this conflict presents a principal challenge for the modern fisheries manager. The concepts of biotic integrity and ecological integrity are being applied in fisheries science, natural resource management, and environmental legislation, but explicit definitions of these terms are elusive. Biotic integrity of an ecosystem may be defined as the capability of supporting and maintaining an integrated, adaptive community of organisms having a species composition, diversity, and functional organization comparable to that of a natural habitat of the region (Karr and Dudley 1981). Following that, ecological integrity is the summation of chemical, physical, and biological integrity. Thus, the concept of ecological integrity extends beyond fish and represents a holistic approach for ecosystem management that is especially applicable to aquatic systems. The more general term, ecological condition, refers to the state of the physical, chemical, and biological characteristics of the environment and the processes and interactions that connect them. While the concept of ecological integrity may appear unambiguous, its assessment and practice are much less clear. Ecological integrity made its debut in the USA with the Clean Water Act (CWA) of 1972 (Federal Water Pollution Control Act, as amended through Public Law 107–303, November 27, 2002), which states only one objective, “to restore and maintain the chemical, physical, and biological integrity of the Nation’s waters.” This legislation compelled resource managers to focus on chemical pollution from point effluent sources, such as industrial and municipal outflows, as well as give attention to diffuse, chronic, and watershed effects on ecological integrity. Further, the CWA allowed pursuit of restoration programs in degraded water bodies and catalyzed the science and practice of restoration ecology. The term ecosystem health is often raised in discussions of ecological integrity. Perhaps it is natural to anthropomorphize our concern for personal health to ecosystems, so it becomes a useful metaphor for understanding the concept of ecological integrity. However, whether or not an ecosystem should be considered an entity, such as a superorganism, is a debate without end that began with early ecologists and continues today (Clements 1916; Suter 1993; Simon 1999a). Regardless, the ecosystem is indeed a natural unit with a level of organization and properties beyond the collection of those species that occupy it and presents the most appropriate spatial and organizational scale in which to assess and study ecological integrity. Streams and rivers serve as integrators of chemical, physical, and biological conditions across the landscape, and while the theory and practice associated with ecological integrity of aquatic systems is easily applied to flowing waters and is emphasized in this chapter, they are broadly applicable among all aquatic systems.

Book chapter↗

USGS2005

Geography for a Changing World - A science strategy for the geographic research of the U.S. Geological Survey, 2005-2015

This report presents a science strategy for the geographic research of the U.S. Geological Survey (USGS) for the years 2005-2015. The common thread running through the vision, mission, and science goals presented in the plan is that USGS geographers will provide national leadership to understand coupled human-environmental systems in the face of land change and will deliver pertinent information to decisionmakers on the vulnerability and resilience of these systems. We define land change science as the study of the human and environment dynamics that give rise to changed land use, cover, and surface form. A number of realities shape the strategic context of this plan: The Department of Interior Strategic Plan focuses on meeting society’s resource needs and sustaining the Nation’s life support systems, underscoring the importance of characterizing and understanding coupled human-environmental systems. In redefining its mission in the mid-1990s, the USGS envisions itself as an integrated natural science and information agency. The USGS will assume a national leadership role in the use of science to develop knowledge about the web of relations that couple biophysical and human systems and translate this knowledge into unbiased, reliable information that meets important societal information needs. The following trends will influence USGS geography-oriented science activities over the next decade. Most of the emerging earth science issues that the USGS will address are geographic phenomena. A growing international concern for aligning society’s development activities with environmental limits has led to an articulation of a science agenda associated with global environmental change, vulnerability, and resilience. Earth science investigations have evolved toward the study of very large areas, and the resulting huge volumes of data are challenging to manage and understand. Finally, scientists and the public face the challenge of gaining intelligent insights about geographic and environmental processes from these data, with the ultimate goal of guiding resource-management decisions. The first four science goals in the plan support understanding the human and environmental dynamics of land change. Each science goal has an associated set of strategic actions to achieve the goal. These goals and actions are consistent with national science priorities and the Department of Interior and USGS missions, take advantage of existing expertise, and lead to the strengthening of critical geographic research capacities that do not exist in other USGS disciplines.

Circular↗

USGS2007

U.S. Geological Survey Activities Related to American Indians and Alaska Natives: Fiscal Year 2005

Introduction This report describes the activities that the U.S. Geological Survey (USGS) conducted with American Indian and Alaska Native governments, educational institutions, and individuals during Federal fiscal year (FY) 2005. Most of these USGS activities were collaborations with Tribes, Tribal organizations, or professional societies. Others were conducted cooperatively with the Bureau of Indian Affairs (BIA) or other Federal entities. The USGS is the earth and natural science bureau within the U.S. Department of the Interior (DOI). The USGS does not have regulatory or land management responsibilities. As described in this report, there are many USGS activities that are directly relevant to American Indians, Alaska Natives, and to Native lands. A USGS website, dedicated to making USGS more accessible to American Indians, Alaska Natives, their governments, and institutions, is available at www.usgs.gov/indian. This website includes information on how to contact USGS American Indian/Alaska Native Liaisons, training opportunities, and links to other information resources. This report and previous editions are also available through the website. The USGS realizes that Native knowledge and cultural traditions of living in harmony with nature result in unique Native perspectives that enrich USGS studies. USGS seeks to increase the sensitivity and openness of its scientists to the breadth of Native knowledge, expanding the information on which their research is based. USGS scientific studies include data collection, mapping, natural resource modeling, and research projects. These projects typically last 2 or 3 years, although some are parts of longer-term activities. Some projects are funded cooperatively, with USGS funds matched or supplemented by individual Tribal governments, or by the BIA. These projects may also receive funding from the U.S. Environmental Protection Agency (USEPA), the Indian Health Service (part of the Department of Health and Human Services), or other Federal agencies. The USGS routinely works with its sister bureaus in the Department of the Interior to provide the scientific information and expertise needed to meet the Department's science priorities. Some USGS activities described in this report are conducted as collateral tasks that result from USGS employees identifying and responding to perceived needs. These endeavors are usually prompted by employee interests and frequently involve educational activities. The education is often a reciprocal learning and teaching experience for USGS employees and for Native participants. Through these activities, USGS employees help to fulfill a mission of the USGS - to demonstrate scientific relevance - while helping their fellow citizens. Increasingly, some of the educational activities are becoming parts of formal USGS projects. USGS employees also take initiative in assisting American Indians and Alaska Natives by participating in several organizations that promote awareness of science career opportunities among Native peoples and help build support and communication networks. One such group is the American Indian Science and Engineering Society (AISES). USGS employees join this organization on a voluntary basis, bringing the benefits of this expanded network to the USGS, as many employees do with other professional organizations. The studies briefly described in this report span subsistence issues, wildlife health, water quality, mineral resources, monitoring and modeling to gather information and predict what may happen in the future. Although each project description relates to Native Americans in some way, the projects vary widely, including who conducted the work, the goals and products, the duration of the study, and whether it was local or covered a broad area. Each major organizational unit of the USGS has identified an American Indian/Alaska Native liaison. The USGS has a regional organizational structure, with Western, Central,

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USGS2010

U.S. Geological Survey activities related to American Indians and Alaska Natives: Fiscal years 2007 and 2008

In the late 1800s, John Wesley Powell, the second director of the U.S. Geological Survey (USGS), followed his interest in the tribes of the Great Basin and Colorado Plateau and studied their cultures, languages, and surroundings. From that early time, the USGS has recognized the importance of Native knowledge and living in harmony with nature as complements to the USGS mission to better understand the Earth. Combining traditional ecological knowledge with empirical studies allows the USGS and Native American governments, organizations, and people to increase their mutual understanding and respect for this land. The USGS is the earth and natural science bureau within the U.S. Department of the Interior (DOI) and is not responsible for regulations or land management. Climate change is a major current issue affecting Native lives and traditions throughout the United States. Climate projections for the coming century indicate an increasing probability for more frequent and more severe droughts in the Southwest, including the Navajo Nation. Erosion has claimed Native homes in Alaska. Fish have become inedible due to diseases that turn their flesh mushy. Native people who rely on or who are culturally sustained by hunting, fishing, and using local plants are living with climate change now. The traditional knowledge of Native peoples enriches and confirms the work of USGS scientists. The results are truly synergistic-greater than the sum of their parts. Traditional ecological knowledge is respected and increasingly used in USGS studies-when the holders of that knowledge choose to share it. The USGS respects the rights of Native people to maintain their patrimony of traditional ecological knowledge. The USGS studies can help Tribes, Native organizations, and natural resource professionals manage Native lands and resources with the best available unbiased data and information that can be added to their traditional knowledge. Wise Native leaders have noted that traditional ecological knowledge includes the connections between Earth and her denizens. From this perspective, it is the connections among these ?relatives? that needs to be nurtured. This perspective on nature is finding new adherents among Natives and non-Natives as understanding of climate change and other environmental conditions deepens. Although this report uses the term ?resources,? the USGS, through its interdisciplinary research, acknowledges the interconnectedness of the Earth and the things that live upon it.

Circular↗

USGS1999

Paleomagnetic and palynologic analyses of Albian to Santonian strata at Bayn Shireh, Burkhant, and Khuren Dukh, eastern Gobi Desert, Mongolia

Cretaceous terrestrial sediments deposited in a series of intracratonic basins across the Gobi Desert region of southern Mongolia and northern China contain a unique and diverse vertebrate fauna. In 1996 an expedition jointly sponsored by the Mongolian Paleontological Center and the Hayashibara Museum of Natural Sciences revisited a number of famous vertebrate fossil localities in the eastern Gobi region of Mongolia and, as part of a broad geological and paleontological study, collected a series of paleomagnetic samples from measured sections at Bayn Shireh, Burkhant and Khuren Dukh, as well as from an unmeasured locality adjacent to Khuren Dukh. Expedition members also collected palynologic samples from Khuren Dukh and the adjacent locality. Paleomagnetic analysis shows that all the sites from which samples were collected display detrital remnant magnetization that is consistently normal in polarity. The measured Cretaceous magnetic directions are oriented to the east or northeast of the present day expected direction (declination 356.2??, inclination 65.2??), and they are wholly concordant with that expected for a mid-latitude Northern Hemisphere sampling locality, and with the directions for this period reported by other workers. These results, when considered in tandem with the known biostratigraphy, strongly suggest that the sedimentary deposits at all four localities in the eastern Gobi correlate to the normal polarity chron 34 (the Cretaceous Long Normal), which ranges in age from approximately 121 to 83.5 million years. Previous vertebrate, invertebrate and palynological data from Khuren Dukh suggest that the lower and middle parts of the stratigraphic interval exposed there (which have been assigned to the Shinekhudag Formation) are 'Khukhtekian' in age and correspond to the Aptian-Albian interval that can be broadly correlated to the older, Early Cretaceous part of the Cretaceous Long Normal, C34n. New palynologic data presented here indicate that these strata are no older than middle to late Albian. The rocks at Bayn Shireh (the Bayn Shireh Formation) have been assigned a 'Baynshirenian' biostratigraphic age that may range from Cenomanian to early Campanian. The magnetostratigraphy results presented here indicate that the strata at both the Bayn Shireh and Burkhant localities do not cross the Santonian/Campanian Stage boundary, however, as this is believed to lie at, or very near, the C34n/C33r reversal boundary. Thus, the Bayn Shireh Formation was most likely deposited near the end of the Cretaceous Long Normal Interval, no later than the latest Santonian.

Cretaceous Research↗

USGS2025

Coexistence beyond disciplinary silos: Five dimensions of analysis for more convivial human-predator interactions

Understanding human-predator interactions has been a central goal of conservation for decades, yet many previous efforts have approached this challenge from disciplinary perspectives focused on single case studies. There is a need for more transdisciplinary and multi-sited research to enrich our understandings of the complexity of human-nonhuman interactions and to design ways to make them more convivial. The multi-year CONVIVA “convivial conservation” research project addressed this gap, involving scholars from natural sciences, social sciences and humanities to promote coexistence, biodiversity and justice in conservation across four diverse case studies of apex predators: jaguars in Brazil, wolves in Finland, lions in Tanzania, and brown bears in California, United States. In this article, we set out two key contributions. First, we highlight how our project created iterative, dialogue-based reflections amongst different disciplines and perspectives to inform research questions, methods and units of analysis, fulfilling what we see as a key need in the literature. Second, we operationalise our collaboration beyond disciplinary silos into a novel framework of five interconnected dimensions of analysis, that characterise human-predator interactions, drawing on a range of lenses and including a series of guiding questions. We also showcase empirical material from our cases across wildlife, environment, interactions, institutions and justice dimensions. We present our approach, framework and findings with collective reflections and an invitation for adaptation and further research on their suitability to other contexts and species.

Biological Conservation↗

USGS2017

Ecosystem services in the Great Lakes

A comprehensive inventory of ecosystem services across the entire Great Lakes basin is currently lacking and is needed to make informed management decisions. A greater appreciation and understanding of ecosystem services, including both use and non-use services, may have avoided misguided resource management decisions in the past that resulted in negative legacies inherited by future generations. Given the interest in ecosystem services and lack of a coherent approach to addressing this topic in the Great Lakes, a summit was convened involving 28 experts working on various aspects of ecosystem services in the Great Lakes. The invited attendees spanned a variety of social and natural sciences. Given the unique status of the Great Lakes as the world's largest collective repository of surface freshwater, and the numerous stressors threatening this valuable resource, timing was propitious to examine ecosystem services. Several themes and recommendations emerged from the summit. There was general consensus that: 1) a comprehensive inventory of ecosystem services throughout the Great Lakes is a desirable goal but would require considerable resources; 2) more spatially and temporally intensive data are needed to overcome our data gaps, but the arrangement of data networks and observatories must be well-coordinated; 3) trade-offs must be considered as part of ecosystem services analyses; and 4) formation of a Great Lakes Institute for Ecosystem Services, to provide a hub for research, meetings, and training is desirable. Several challenges also emerged during the summit, which are discussed.

Great Lakes↗

USGS2022

Human-in-the-Loop segmentation of earth surface imagery

Segmentation, or the classification of pixels (grid cells) in imagery, is ubiquitously applied in the natural sciences. Manual methods are often prohibitively time-consuming, especially those images consisting of small objects and/or significant spatial heterogeneity of colors or textures. Labeling complicated regions of transition that in Earth surface imagery are represented by collections of mixed-pixels, -textures, and -spectral signatures, can be especially error-prone because it is difficult to reliably unmix, identify and delineate consistently. However, the success of supervised machine learning (ML) approaches is entirely dependent on good label data. We describe a fast, semi-automated, method for interactive segmentation of N-dimensional (x, y, N) images into two-dimensional (x, y) label images. It uses human-in-the-loop ML to achieve consensus between the labeler and a model in an iterative workflow. The technique is reproducible; the sequence of decisions made by human labeler and ML algorithms can be encoded to file, so the entire process can be played back and new outputs generated with alternative decisions and/or algorithms. We illustrate the scientific potential of segmentation of imagery of diverse settings and image types using six case studies from river, estuarine, and open coast environments. These photographic and non-photographic imagery consist of 1- and 3-bands on regular and irregular grids ranging from centimeters to tens of meters. We demonstrate high levels of agreement in label images generated by several labelers on the same imagery, and make suggestions to achieve consensus and measure uncertainty, ideal for widespread application in training supervised ML for image segmentation.

Earth and Space Science↗

USGS2012

Inflation of Long Valley Caldera from one year of continuous GPS observations

A permanent Global Positioning System receiver at Casa Diablo Hot Springs, Long Valley Caldera, California was installed in January, 1993, and has operated almost continuously since then. The data have been transmitted daily to the Jet Propulsion Laboratory for routine analysis with data from the Fiducial Laboratories for an International Natural sciences Network (FLINN) by the JPL FLINN analysis center. Results from these analyses have been used to interpret the on going deformation at Long Valley, with data excluded from periods when the antenna was covered under 2.5 meters of snow and from some periods when Anti Spoofing was enforced on the GPS signal. The remaining time series suggests that uplift of the resurgent dome of Long Valley Caldera during 1993 has been 2.5±1.1 cm/yr and horizontal motion has been 3.0±0.7 cm/yr at S53W in a no-net-rotation global reference frame, or 1.5±0.7 cm/yr at S14W relative to the Sierra Nevada block. These rates are consistent with uplift predicted from frequent horizontal strain measurements. Spectral analysis of the observations suggests that tidal forcing of the magma chamber is not a source of the variability in the 3 dimensional station location. These results suggest that remotely operated, continuously recording GPS receivers could prove to be a reliable tool for volcano monitoring throughout the world.

California↗

USGS2024

Design, development, and implementation of IsoBank: A centralized repository for isotopic data

Stable isotope data have made pivotal contributions to nearly every discipline of the physical and natural sciences. As the generation and application of stable isotope data continues to grow exponentially, so does the need for a unifying data repository to improve accessibility and promote collaborative engagement. This paper provides an overview of the design, development, and implementation of IsoBank , a community-driven initiative to create an open-access repository for stable isotope data implemented online in 2021. A central goal of IsoBank is to provide a web-accessible database supporting interdisciplinary stable isotope research and educational opportunities. To achieve this goal, we convened a multi-disciplinary group of over 40 analytical experts, stable isotope researchers, database managers, and web developers to collaboratively design the database. This paper outlines the main features of IsoBank and provides a focused description of the core metadata structure. We present plans for future database and tool development and engagement across the scientific community. These efforts will help facilitate interdisciplinary collaboration among the many users of stable isotopic data while also offering useful data resources and standardization of metadata reporting across eco-geoinformatics landscapes.

PLoS ONE↗

USGS2013

First records of Nocomis biguttatus (Hornyhead Chub) from West Virginia discovered in museum voucher specimens

Specimens of Nocomis biguttatus (Hornyhead Chub) from South Fork Hughes River (Little Kanawha River drainage, WV) were discovered in two museum lots at the North Carolina Museum of Natural Sciences. These accessions, collected in 1960 and 1966, represent an addition to the state fauna and are the first distribution records for this species from the Appalachian Plateau, WV

Northeastern Naturalist↗

USGS2011

Indigenous observations of climate change in the Lower Yukon River Basin, Alaska

Natural science climate change studies have led to an overwhelming amount of evidence that the Arctic and Subarctic are among the world's first locations to begin experiencing climate change. Indigenous knowledge of northern regions is a valuable resource to assess the effects of climate change on the people and the landscape. Most studies, however, have focused on coastal Arctic and Subarctic communities with relatively little focus on inland communities. This paper relates the findings from fieldwork conducted in the Lower Yukon River Basin of Alaska in the spring of 2009. Semi-structured interviews were conducted with hunters and elders in the villages of St. Mary's and Pitka's Point, Alaska to document observations of climate change. This study assumes that scientific findings and indigenous knowledge are complementary and seeks to overcome the false dichotomy that these two ways of knowing are in opposition. The observed changes in the climate communicated by the hunters and elders of St. Mary's and Pitka's Point, Alaska are impacting the community in ways ranging from subsistence (shifting flora and fauna patterns), concerns about safety (unpredictable weather patterns and dangerous ice conditions), and a changing resource base (increased reliance on fossil fuels). Here we attempt to address the challenges of integrating these two ways of knowing while relating indigenous observations as described by elders and hunters of the study area to those described by scientific literature.

Human Organization↗

USGS1971

Proceedings of the eighty-eighth stated meeting of the American Ornithologists' Union

The Eighty-eighth Stated Meeting of the American Ornithologists' Union was held 5-9 October 1970 at Buffalo, New York. Cosponsors were the Buffalo Society of Natural Sciences, the Buffalo Audubon Society, and the Buffalo Ornithological Society. Business sessions were held in the Statler Hilton Hotel on 5 October, and papers sessions in the Buffalo Museum of Science on 6, 7, and 8 October. An all-day field trip on 9 October visited the Niagara Falls and Oak Orchard Swamp areas.

The Auk↗

USGS1999

Scientists in action!

News about careers in the natural sciences—from mapping the planets to sampling the ocean floor, from protecting wildlife to forecasting volcanic eruptions.

Report↗

USGS2005

Scientists in action

News about careers in the natural sciences -- from mapping the planets to sampling the ocean floor, from protecting wildlife to forecasting volcanic eruptions.

General Information Product↗

USGS2006

USGS Information Technology Strategic Plan: Fiscal Years 2007-2011

Introduction: The acquisition, management, communication, and long-term stewardship of natural science data, information, and knowledge are fundamental mission responsibilities of the U.S. Geological Survey (USGS). USGS scientists collect, maintain, and exchange raw scientific data and interpret and analyze it to produce a wide variety of science-based products. Managers throughout the Bureau access, summarize, and analyze administrative or business-related information to budget, plan, evaluate, and report on programs and projects. Information professionals manage the extensive and growing stores of irreplaceable scientific information and knowledge in numerous databases, archives, libraries, and other digital and nondigital holdings. Information is the primary currency of the USGS, and it flows to scientists, managers, partners, and a wide base of customers, including local, State, and Federal agencies, private sector organizations, and individual citizens. Supporting these information flows is an infrastructure of computer systems, telecommunications equipment, software applications, digital and nondigital data stores and archives, technical expertise, and information policies and procedures. This infrastructure has evolved over many years and consists of tools and technologies acquired or built to address the specific requirements of particular projects or programs. Developed independently, the elements of this infrastructure were typically not designed to facilitate the exchange of data and information across programs or disciplines, to allow for sharing of information resources or expertise, or to be combined into a Bureauwide and broader information infrastructure. The challenge to the Bureau is to wisely and effectively use its information resources to create a more Integrated Information Environment that can reduce costs, enhance the discovery and delivery of scientific products, and improve support for science. This Information Technology Strategic Plan for the USGS outlines key information technology (IT) strategic goals and objectives that will support the Bureau's science mission, while also aligning with the Department of the Interior (DOI) IT Strategic Plan and the DOI Government Performance and Results Act (GPRA) Strategic Plan.

Circular↗

USGS2008

U.S. Geological Survey activities related to American Indians and Alaska Natives: Fiscal year 2006

Circular↗

USGS2016

Digital geologic map data for the Ozark National Scenic Riverways and adjacent areas along the Current River and Jacks Fork, Missouri

The geology of the Ozark National Scenic Riverways (ONSR) in southern Missouri has been mapped at 1:24,000 scale. This endeavor was achieved through the combined efforts of U.S. Geological Survey and Missouri Geological Survey individual quadrangle mapping and additional fieldwork by the authors of this report. Geologic data covering the area of the ONSR and a 1-mile (1.6-kilometer) buffer zone surrounding the park, as well as geologic data from a few key adjoining areas, have been compiled into a single, seamless geographic information system database. The intent is to provide base geologic information for natural science research and land management in the park and surrounding areas. The data are served online at ScienceBase ( https://www.sciencebase.gov/catalog/ ), where they are provided in Environmental Systems Research Institute (ESRI) file geodatabase format, and are accompanied by metadata files. These data can be accessed at: http://dx.doi.org/10.5066/F7CJ8BKB . Additional detailed geologic information about the ONSR and surrounding areas is available in the separate 1:24,000-scale quadrangle maps and in a 1:100,000-scale map and report on the regional geology.

Missouri↗