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At least 73 records · Page 4Linked to original sources

An approach to regional wetland digital elevation model development using a differential global positioning system and a custom-built helicopter-based surveying system

Accurate topographic data are critical to restoration science and planning for the Everglades region of South Florida, USA. They are needed to monitor and simulate water level, water depth and hydroperiod and are used in scientific research on hydrologic and biologic processes. Because large wetland environments and data acquisition challenge conventional ground-based and remotely sensed data collection methods, the United States Geological Survey (USGS) adapted a classical data collection instrument to global positioning system (GPS) and geographic information system (GIS) technologies. Data acquired with this instrument were processed using geostatistics to yield sub-water level elevation values with centimetre accuracy (±15 cm). The developed database framework, modelling philosophy and metadata protocol allow for continued, collaborative model revision and expansion, given additional elevation or other ancillary data.

Florida↗

Evolution of natural history information in the 21st century – developing an integrated framework for biological and geographical data

Threats to marine and estuarine species operate over many spatial scales, from nutrient enrichment at the watershed/estuarine scale to invasive species and climate change at regional and global scales. To help address research questions across these scales, we provide here a standardized framework for a biogeographical information system containing queriable biological data that allows extraction of information on multiple species, across a variety of spatial scales based on species distributions, natural history attributes and habitat requirements. As scientists shift from research on localized impacts on individual species to regional and global scale threats, macroecological approaches of studying multiple species over broad geographical areas are becoming increasingly important. The standardized framework described here for capturing and integrating biological and geographical data is a critical first step towards addressing these macroecological questions and we urge organizations capturing biogeoinformatics data to consider adopting this framework.

Journal of Biogeography↗

Global dynamics of a mutualism–competition model with one resource and multiple consumers

Recent simulation modeling has shown that species can coevolve toward clusters of coexisting consumers exploiting the same limiting resource or resources, with nearly identical ratios of coefficients related to growth and mortality. This paper provides a mathematical basis for such as situation; a full analysis of the global dynamics of a new model for such a class of n -dimensional consumer–resource system, in which a set of consumers with identical growth to mortality ratios compete for the same resource and in which each consumer is mutualistic with the resource. First, we study the system of one resource and two consumers. By theoretical analysis, we demonstrate the expected result that competitive exclusion of one of the consumers can occur when the growth to mortality ratios differ. However, when these ratios are identical, the outcomes are complex. Either equilibrium coexistence or mutual extinction can occur, depending on initial conditions. When there is coexistence, interaction outcomes between the consumers can transition between effective mutualism, parasitism, competition, amensalism and neutralism. We generalize to the global dynamics of a system of one resource and multiple consumers. Changes in one factor, either a parameter or initial density, can determine whether all of the consumers either coexist or go to extinction together. New results are presented showing that multiple competing consumers can coexist on a single resource when they have coevolved toward identical growth to mortality ratios. This coexistence can occur because of feedbacks created by all of the consumers providing a mutualistic service to the resource. This is biologically relevant to the persistence of pollination–mutualisms.

Journal of Mathematical Biology↗

Resource-driven pattern formation in consumer-resource systems with asymmetric dispersal on a plane

This paper considers resource-driven pattern formation in consumer-resource systems. Here, a planar pattern consists of many big patches, and a big patch can be regarded as combination of many patches on the plane. The consumer moves between patches asymmetrically, while the asymmetry is driven by the resource abundance. Based on experimental models with linearly-linked patches, we propose a planarly-linked-patch model with asymmetric dispersal. Using dynamical systems theory, we show global stability of equilibria in the model, and demonstrate how the resource-driven dispersal forms patterns. It is shown that appropriate asymmetry in dispersal would make the consumer persist in the system, even in sink patches. The asymmetry could also make the consumer’s total population abundance larger than that without dispersal. However, inappropriate asymmetry would make the consumer go into extinction, even in source patches. Dispersal rates are also shown to play a role in the persistence and abundance increase. Our results are consistent with experimental observations and provide new insights. Numerical simulations by the model reproduce various vegetation patterns in the real world. This work has potential applications in spatial pattern formation in biological research.

SIAM Journal on Applied Mathematics↗

Comparison of subyearling fall chinook salmon's use of riprap revetments and unaltered habitats in Lake Wallula of the Columbia river

Subyearling fall chinook salmon's Oncorhynchus tshawytscha use of unaltered and riprap habitats in Lake Wallula of the Columbia River was determined with point abundance data collected by electrofishing in May 1994 and 1995. We documented the presence or absence of subyearlings at 277 sample sites and collected physical habitat information at each site. Based on logistic regression, we found that the probability of fish presence was greater in unaltered shoreline habitats than in riprap habitats. Substrate size was the most important factor in determining fish presence, with dominant substrates larger than 256 mm having the lowest probability of fish presence. Water velocity, also included in our model due to its biological importance, was not a significant factor affecting presence or absence (P = 0.1102). The correct prediction rate of fish presence or absence in our sample sites using cross validation was 67%. Our model showed that substrate was the most important factor determining subyearling habitat use, but the model did not include other habitat variables known to be important to subyearlings in more diverse systems. We suggest that resource managers consider alternative methods of bank stabilization that are compatible with the habitat requirements of the fish that use them.

Washington↗

Assessing biodiversity in Nuevo Leon, Mexico: Are nature reserves the answer?

The Mexican state of Nuevo Leon, located in the northeastern portion of the country, currently has 26 state and three federal nature reserves covering approximately 4.5% of its land area. These reserves were established for a variety of reasons not necessarily related to conservation purposes. In 2000 in response to a growing concern about the lack of organized conservation reserve planning to protect the important biological and physical features of Mexico, the Mexican Commission for Knowledge and Use of Biodiversity proposed 12 new terrestrial reserves for Nuevo Leon. The new reserves, if established, would increase the proportion of protected lands in the state to almost 24% of the state's land area. We compiled a Geographic Information System (GIS) analysis using digital thematic maps of physical and ecological features to examine how well the existing and proposed reserves incorporated the major biological and physical features of the state. The existing reserves are located primarily in regions with elevations > 1,000-1,500 m, on less productive soils, and are dominated by pine and oak forest cover types. As a result, the state's dominant biotic region - low elevation coastal plain with xeric scrub vegetation - is disproportionately under represented in the current reserve system. The new reserves would expand the protection of biophysical resources throughout the state. However, the inclusion of important resources in the low elevation coastal lands would still be limited.

Nuevo Leon↗

Connectivity of streams and wetlands to downstream waters: An integrated systems framework

Interest in connectivity has increased in the aquatic sciences, partly because of its relevance to the Clean Water Act. This paper has two objectives: (1) provide a framework to understand hydrological, chemical, and biological connectivity, focusing on how headwater streams and wetlands connect to and contribute to rivers; and (2) briefly review methods to quantify hydrological and chemical connectivity. Streams and wetlands affect river structure and function by altering material and biological fluxes to the river; this depends on two factors: (1) functions within streams and wetlands that affect material fluxes; and (2) connectivity (or isolation) from streams and wetlands to rivers that allows (or prevents) material transport between systems. Connectivity can be described in terms of frequency, magnitude, duration, timing, and rate of change. It results from physical characteristics of a system, e.g., climate, soils, geology, topography, and the spatial distribution of aquatic components. Biological connectivity is also affected by traits and behavior of the biota. Connectivity can be altered by human impacts, often in complex ways. Because of variability in these factors, connectivity is not constant but varies over time and space. Connectivity can be quantified with field‐based methods, modeling, and remote sensing. Further studies using these methods are needed to classify and quantify connectivity of aquatic ecosystems and to understand how impacts affect connectivity.

Journal of the American Water Resources Associatio↗

Development of a benthic invertebrate objective for mesotrophic Great Lakes waters

A biological indicator of mesotrophic conditions should (1) provide an appropriate and interpretable objective; (2) be achievable if corrective measures are taken (i.e., it should be within the expected environmental range of the system); and (3) allow measurement of progress toward the objective. Historical data from the Great Lakes suggest that population density of the burrowing mayfly, Hexagenia limbata , could provide an appropriate objective, and that the tubificid oligochaete community can be used to evaluate progress toward that objective. Finally, data from other systems show that Hexagenia can return to locations where it was formerly abundant, and therefore is an attainable objective for formerly mesotrophic ecosystems.

Journal of Great Lakes Research↗

Design procedure for hooded surface oxygen absorption systems

A design procedure addressing effluent total dissolved gas pressure limits along with standard performance indicators such as oxygen absorption efficiency (kg absorbed/kg applied), and transfer efficiency (kg/kW.h), is presented for surface agitation equipment operating in an oxygen-enriched atmosphere. Application of this contactor type in closed culture systems is attractive given its insensitivity to biological fouling and ability to operate without the need for a significant hydraulic gradient. Performance algorithms were developed through application of chemical reactor theory, Henry's Law and the Ideal Gas Law. In the analysis, gas and liquid phases were treated as being homogeneous. The design steps presented are unique in that required mass transfer coefficients (K L a), operating pressures (CP), and oxygen feed rates (G/L) are calculated for target changes in both dissolved oxygen and nitrogen without the use of iterative numerical procedures. A second calculation sequence establishes the sensitivity of system performance to changes in G/L when CP and K L a are known.

Journal of the World Aquaculture Society↗

Confocal microscopy as a useful approach to describe gill rakers of Asian species of carp and native filter-feeding fishes of the upper Mississippi River system

To better understand potential diet overlap among exotic Asian species of carp and native species of filter-feeding fishes of the upper Mississippi River system, microscopy was used to document morphological differences in the gill rakers. Analysing samples first with light microscopy and subsequently with confocal microscopy, the three-dimensional structure of gill rakers in Hypophthalmichthys molitrix , Hypophthalmichthys nobilis and Dorosoma cepedianum was more thoroughly described and illustrated than previous work with traditional microscopy techniques. The three-dimensional structure of gill rakers in Ictiobus cyprinellus was described and illustrated for the first time.

Journal of Fish Biology↗

Hyperspectral narrowband imaging spectroscopy: A new paradigm for Earth observation

This editorial introduces the Special Issue entitled “Hyperspectral Narrowband Imaging Spectroscopy: A New Paradigm for Earth Observation” in the August 2026 issue of Photogrammetric Engineering & Remote Sensing (PE&RS), the flagship journal of the American Society for Photogrammetry and Remote Sensing (ASPRS). This volume represents the fourth dedicated hyperspectral special issue published in PE&RS, following earlier contributions by Thenkabail et al. (2025, 2024a, 2024b), and continues ASPRS’s commitment to advancing cutting‑edge imaging spectroscopy research and its applications across Earth system science. Remote sensing is undergoing one of the most profound transformations in its history. The emergence of hyperspectral narrowband (HNB) imaging spectroscopy data, capable of acquiring hundreds of contiguous, narrow spectral bands, has shifted the discipline from observing Earth in a handful of broad spectral windows to capturing continuous spectral signatures of the Planet. This transition marks a decisive break from the multispectral paradigm that has dominated satellite remote sensing for nearly five decades, driven by the advent of new orbital imaging spectrometers such as EnMAP, PRISMA, and NASA’s EMIT, and by the forthcoming Surface Biology and Geology (SBG) mission ((Pires Silva et al., 2026; Bourriz et al., 2025; Thenkabail et al., 2025; Chabrillat et al., 2024; Aneece et al., 2024; Dave et al., 2024; Thenkabail et al., 2024a; Thenkabail et al., 2024b; Thenkabail, 2024a; Thenkabail, 2024b; Thompson et al., 2022; Kokaly et al., 2022; Aneece & Thenkabail, 2022; Cawse Nicholson et al., 2021; Guanter et al., 2021; Vangi et al., 2021; Thenkabail et al., 2021). These missions (e.g., Table 1) deliver unprecedented spectral fidelity, improved signal to noise ratios, and global coverage capabilities, enabling a new era of quantitative, spectroscopy based Earth observation. Where multispectral broadbands (MBBs) provide only a few discrete measurements along the electromagnetic spectrum, HNB systems deliver rich, diagnostic information that enables scientists to characterize Earth’s surface with unprecedented biochemical, biophysical, and structural detail (Figure 1a, 1b). The implications for environmental monitoring, agriculture, water resources, and mineral exploration are profound. Several overarching themes emerge: • Spectral fidelity matters. The ability to preserve subtle absorption features is essential for mineral mapping, vegetation trait retrieval, and biochemical modeling. • AI and deep learning are indispensable. From destriping to classification, modern analytics must be scalable, label‑efficient, and capable of exploiting the full spectral–spatial richness of HNB data. • Physics‑based and data‑driven approaches must converge. Radiative transfer models such as PROSAIL, enhanced with localized soil parameterizations, remain foundational for biophysical retrievals and model‑based inference. • Dimensionality reduction and feature extraction are critical. Techniques such as L1‑ISOMAP demonstrate that intelligent manifold learning can unlock the structure of fused, high‑dimensional datasets. • Next‑generation architectures must be interactive and multimodal. ICTNet exemplifies the future of hyperspectral classification: hybrid, synergistic, and capable of modeling both local textures and global spectral dependencies.

Photogrammetric Engineering and Remote Sensing (PE↗

Shallow water processes govern system-wide phytoplankton bloom dynamics: A modeling study

A pseudo-two-dimensional numerical model of estuarine phytoplankton growth and consumption, vertical turbulent mixing, and idealized cross-estuary transport was developed and applied to South San Francisco Bay. This estuary has two bathymetrically distinct habitat types (deep channel, shallow shoal) and associated differences in local net rates of phytoplankton growth and consumption, as well as differences in the water column's tendency to stratify. Because many physical and biological time scales relevant to algal population dynamics decrease with decreasing depth, process rates can be especially fast in the shallow water. We used the model to explore the potential significance of hydrodynamic connectivity between a channel and shoal and whether lateral transport can allow physical or biological processes (e.g. stratification, benthic grazing, light attenuation) in one sub-region to control phytoplankton biomass and bloom development in the adjacent sub-region. Model results for South San Francisco Bay suggest that lateral transport from a productive shoal can result in phytoplankton biomass accumulation in an adjacent deep, unproductive channel. The model further suggests that turbidity and benthic grazing in the shoal can control the occurrence of a bloom system-wide; whereas, turbidity, benthic grazing, and vertical density stratification in the channel are likely to only control local bloom occurrence or modify system-wide bloom magnitude. Measurements from a related field program are generally consistent with model-derived conclusions.

Journal of Marine Systems↗

Indexes associated with information theory in water quality

In many biological studies of water quality, a diversity index is calculated in 'bits per individual' by using Shannon's Approximation to Brillouin's Formula. Difficulties associated with such use of Shannon's Formula and its associated parameters are discussed. Recent research has indicated that diversity indexes can be improved if (a) biological sample collection and analysis are standardized prior to use for among various aquatic systems diversity indexes and their associated parameters, (b) the diversity index is measured in 'sits per individual' rather than the presently used unit of 'bits per individual,' and (c) the equation e=(H - H(min)/(H(max) - H(min)) is used to evaluate the uniformity of distribution of individuals among species in a sample where e equals relative evenness. Relative evenness, a ratio, is an expression in which Brillouin's and Shannon's Equations are not arbitrarily mixed. Values of diversity indexes using Brillouin and Shannon Formulas, both in bits and sits per individual, and relative evenness are given for 16 hypothetical samples.

Journal of the Water Pollution Control Federation↗

Evaluating unsupervised methods to size and classify suspended particles using digital in-line holography

Substantial information can be gained from digital in-line holography of marine particles, eliminating depth-of-field and focusing errors associated with standard lens-based imaging methods. However, for the technique to reach its full potential in oceanographic research, fully unsupervised (automated) methods are required for focusing, segmentation, sizing and classification of particles. These computational challenges are the subject of this paper, in which we draw upon data collected using a variety of holographic systems developed at Plymouth University, UK, from a significant range of particle types, sizes and shapes. A new method for noise reduction in reconstructed planes is found to be successful in aiding particle segmentation and sizing. The performance of an automated routine for deriving particle characteristics (and subsequent size distributions) is evaluated against equivalent size metrics obtained by a trained operative measuring grain axes on screen. The unsupervised method is found to be reliable, despite some errors resulting from over-segmentation of particles. A simple unsupervised particle classification system is developed, and is capable of successfully differentiating sand grains, bubbles and diatoms from within the surf-zone. Avoiding miscounting bubbles and biological particles as sand grains enables more accurate estimates of sand concentrations, and is especially important in deployments of particle monitoring instrumentation in aerated water. Perhaps the greatest potential for further development in the computational aspects of particle holography is in the area of unsupervised particle classification. The simple method proposed here provides a foundation upon which further development could lead to reliable identification of more complex particle populations, such as those containing phytoplankton, zooplankton, flocculated cohesive sediments and oil droplets.

Journal of Atmospheric and Oceanic Technology↗

Seasonal dynamics of groundwater-lake interactions at Doñana National Park, Spain

The hydrologic and solute budgets of a lake can be strongly influenced by transient groundwater flow. Several shallow interdunal lakes in southwest Spain are in close hydraulic connection with the shallow ground water. Two permanent lakes and one intermittent lake have chloride concentrations that differ by almost an order of magnitude. A two-dimensional solute-transport model, modified to simulate transient groundwater-lake interaction, suggests that the rising water table during the wet season leads to local flow reversals toward the lakes. Response of the individual lakes, however, varies depending on the lake's position in the regional flow system. The most dilute lake is a flow-through lake during the entire year; the through flow is driven by regional groundwater flow. The other permanent lake, which has a higher solute concentration, undergoes seasonal groundwater flow reversals at its downgradient end, resulting in complex seepage patterns and higher solute concentrations in the ground water near the lake. The solute concentration of the intermittent lake is influenced more strongly by the seasonal wetting and drying cycle than by the regional flow system. Although evaporation is the major process affecting the concentration of conservative solutes in the lakes, geochemical and biochemical reactions influence the concentration of nonconservative solutes. Probable reactions in the lakes include biological uptake of solutes and calcite precipitation; probable reactions as lake water seeps into the aquifer are sulfate reduction and calcite dissolution. Seepage reversals can result in water composition that appears inconsistent with predictions based on head measurements because, under transient flow conditions, the flow direction at any instant may not satisfactorily depict the source of the water. Understanding the dynamic nature of groundwater-lake interaction aids in the interpretation of hydrologic and chemical relations between the lakes and the ground water.

Journal of Hydrology↗

Conservation assessment of current and proposed nature reserves of Tamaulipas State, Mexico

The Mexican state of Tamaulipas located in the northeastern portion of the country currently has five state nature reserves covering slightly less than 3% of its land area. These reserves were established for a variety of reasons, many unrelated to the protection of biological resources. In 2000 in response to a growing concern about the lack of organized conservation reserve planning to protect the important biological and physical features of Mexico, the Mexican Commission for Knowledge and Use of Biodiversity (CONABIO) proposed 13 new terrestrial reserves for Tamaulipas. If established these new reserves would increase the proportion of terrestrial protected lands in the state to over 21%. We compiled a geographic information system (GIS) using existing digital thematic maps of physical and biological features to examine how the existing and proposed reserves might serve to protect the biodiversity and physical features of the state. We found that most of the existing protected sites occur in areas with elevations > 1000-2000 m with temperate climate and dominated by pine forest, oak forest, and cloud forest vegetation cover types. The state's dominant biotic region - low elevation coastal plain with tropical and arid climate types and xeric scrub vegetation - is disproportionately underrepresented in the current reserve system. The creation of the proposed areas would substantially increase the protection of mid and high elevation lands. The largest gap in the protected lands network would be low elevation, level, coastal lands.

Tamaulipas↗

Luring anglers to enhance fisheries

Current fisheries management is, unfortunately, reactive rather than proactive to changes in fishery characteristics. Furthermore, anglers do not act independently on waterbodies, and thus, fisheries are complex socio-ecological systems . Proactive management of these complex systems necessitates an approach—adaptive fisheries management—that allows learning to occur simultaneously with management. A promising area for implementation of adaptive fisheries management is the study of luring anglers to or from specific waterbodies to meet management goals. Purposeful manipulation of anglers, and its associated field of study, is nonexistent in past management. Evaluation of different management practices (i.e., hypotheses) through an iterative adaptive management process should include both a biological and sociological survey to address changes in fish populations and changes in angler satisfaction related to changes in management. We believe adaptive management is ideal for development and assessment of management strategies targeted at angler participation. Moreover these concepts and understandings should be applicable to other natural resource users such as hunters and hikers.

Journal of Environmental Management↗

Not all who meander are lost: Migrating sea lamprey follow river thalwegs to facilitate safe and efficient passage upstream

Efficient navigation is crucial for the reproductive success of many migratory species, often driven by competing pressures to conserve energy and reduce predation risk. Little is known about how non-homing species achieve this balance. We show that sea lamprey ( Petromyzon marinus ), an ancient extant vertebrate, uses persistent patterns in hydro-geomorphology to quickly and efficiently navigate through complex ecosystems. Hydrodynamic flow models coupled with bathymetric mapping and fine-scale acoustic telemetry revealed movement paths that tracked thalweg scour channels, which are often the deepest and fastest-flowing sections of a river. These paths allow rapid and efficient upstream migration and suggest the existence of a bathymetric highway system. Near-substrate swimming along this path resulted in a median of 5.8% energy savings while also promoting improved safety from nocturnally active predators. We hypothesize sea lampreys use hydrostatic pressure-guided rheotaxis to achieve this navigation. It is likely this tactic relies on sensory information from the animal's primitive lateral line and perhaps the inner ear. Insights from this study can be used to redesign conservation practices to achieve improved control where the animal is invasive and improved fish passage within its native range.

Michigan↗