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USGS2018

Combined effects of temperature and salinity on the physiology of two geographically-distant eastern oyster populations

Understanding why a species occupies a certain geographic range and predicting how they will be affected by climate change require characterizing physiological traits in geographically-distant populations. The objective of this study was to perform a direct comparison of two eastern oyster ( Crassostrea virginica ) populations that occupy contrasting temperature and salinity habitats, New Brunswick, Canada (47°N – Gulf of St. Lawrence) and Louisiana, USA (29°N – Gulf of Mexico). Specifically, clearance rate, valve opening, and oxygen consumption rate were measured in oysters of both populations following a full factorial design with three temperatures (10, 20, 30 °C) and two salinities (15, 25). New Brunswick oysters had a greater gill area, shell gape angle, and oxygen consumption rate. Temperature was the main driver of clearance rate, valve opening duration and oxygen consumption rate. Clearance rate at 20 °C and 30 °C was significantly higher than at 10 °C, and oysters at 20 °C had their valves opened for a greater percentage of time compared to oysters at 10 °C and 30 °C. Oxygen consumption rate increased gradually from 10 °C to 30 °C and similarly for both populations, with no indications of a thermal breakpoint at 30 °C. Temperature coefficients for the oxygen consumption rate (Q 10 ) were within the normal ecological range for both populations. No physiological differences were observed between salinity treatments in both populations. No latitudinal compensation in the physiological rates was found. Overall, results showed that C. virginica is tolerant to a broad range of temperatures and salinities. Such physiological plasticity is consistent with the species' extended geographical range.

Journal of Experimental Marine Biology and Ecology↗

USGS2020

Influence of niche breadth and position on the historical biogeography of seafaring scincid lizards

Niche breadth and position can influence diversification among closely related species or populations, yet limited empirical data exist concerning the predictability of the outcomes. We explored the effects of these factors on the evolution of the Emoia atrocostata species group, an insular radiation of lizards in the western Pacific Ocean and Indo-Australasia composed of both endemic and widespread species that differ in niche occupancy. We used molecular data and phylogeographical diffusion models to estimate the timing and patterns of range expansion, and ancestral reconstruction methods to infer shifts in ecology. We show evidence of multidirectional spread from a centre of origin in western Micronesia, and that the phyletic diversity of the group is derived from a putative habitat specialist that survives in the littoral zone. This species is composed of paraphyletic lineages that represent stages or possible endpoints in the continuum toward speciation. Several descendant species have transitioned to either strand or interior forest habitat, but only on remote islands with depauperate terrestrial faunas. Our results suggest that the atrocostata group might be in the early phases of a Wilsonian taxon cycle and that the capacity to tolerate salt stress has promoted dispersal and colonization of remote oceanic islands. Divergence itself, however, is largely driven by geographical isolation rather than shifts in ecology.

Biological Journal of the Linnean Society↗

USGS2011

Multilocus phylogeography and population structure of common eiders breeding in North America and Scandinavia

Aim Glacial refugia during the Pleistocene had major impacts on the levels and spatial apportionment of genetic diversity of species in northern latitude ecosystems. We characterized patterns of population subdivision, and tested hypotheses associated with locations of potential Pleistocene refugia and the relative contribution of these refugia to the post-glacial colonization of North America and Scandinavia by common eiders ( Somateria mollissima ). Specifically, we evaluated localities hypothesized as ice-free areas or glacial refugia for other Arctic vertebrates, including Beringia, the High Arctic Canadian Archipelago, Newfoundland Bank, Spitsbergen Bank and north-west Norway. Location Alaska, Canada, Norway and Sweden. Methods Molecular data from 12 microsatellite loci, the mitochondrial DNA (mtDNA) control region, and two nuclear introns were collected and analysed for 15 populations of common eiders ( n = 716) breeding throughout North America and Scandinavia. Population genetic structure, historical population fluctuations and gene flow were inferred using F -statistics, analyses of molecular variance, and multilocus coalescent analyses. Results Significant inter-population variation in allelic and haplotypic frequencies were observed (nuclear DNA F ST = 0.004–0.290; mtDNA Φ ST = 0.051–0.927). Whereas spatial differentiation in nuclear genes was concordant with subspecific designations, geographic proximity was more predictive of inter-population variance in mitochondrial DNA haplotype frequency. Inferences of historical population demography were consistent with restriction of common eiders to four geographic areas during the Last Glacial Maximum: Belcher Islands, Newfoundland Bank, northern Alaska and Svalbard. Three of these areas coincide with previously identified glacial refugia: Newfoundland Bank, Beringia and Spitsbergen Bank. Gene-flow and clustering analyses indicated that the Beringian refugium contributed little to common eider post-glacial colonization of North America, whereas Canadian, Scandinavian and southern Alaskan post-glacial colonization is likely to have occurred in a stepwise fashion from the same glacial refugium. Main conclusions Concordance of proposed glacial refugia used by common eiders and other Arctic species indicates that Arctic and subarctic refugia were important reservoirs of genetic diversity during the Pleistocene. Furthermore, suture zones identified at MacKenzie River, western Alaska/Aleutians and Scandinavia coincide with those identified for other Arctic vertebrates, suggesting that these regions were strong geographic barriers limiting dispersal from Pleistocene refugia.

Journal of Biogeography↗

USGS2018

Macroecological patterns of sexual size dimorphism in turtles of the world

Sexual size dimorphism (SSD) is a well-documented phenomenon in both plants and animals; however, the ecological and evolutionary mechanisms that drive and maintain SSD patterns across geographic space at regional and global scales are understudied, especially for reptiles. Our goal was to examine geographic variation of turtle SSD and to explore ecological and environmental correlates using phylogenetic comparative methods. We use published body size data on 135 species from nine turtle families to examine how geographic patterns and the evolution of SSD are influenced by habitat specialization, climate (annual mean temperature and annual precipitation) and climate variability, latitude, or a combination of these predictor variables. We found that geographic variation, magnitude and direction of turtle SSD are best explained by habitat association, annual temperature variance and annual precipitation. Use of semi-aquatic and terrestrial habitats was associated with male-biased SSD, whereas use of aquatic habitat was associated with female-biased SSD. Our results also suggest that greater temperature variability is associated with female-biased SSD. In contrast, wetter climates are associated with male-biased SSD compared with arid climates that are associated with female-biased SSD. We also show support for a global latitudinal trend in SSD, with females being larger than males towards the poles, especially in the families Emydidae and Geoemydidae. Estimates of phylogenetic signal for both SSD and habitat type indicate that closely related species occupy similar habitats and exhibit similar direction and magnitude of SSD. These global patterns of SSD may arise from sex-specific reproductive behaviour, fecundity and sex-specific responses to environmental factors that differ among habitats and vary systematically across latitude. Thus, this study adds to our current understanding that while SSD can vary dramatically across and within turtle species under phylogenetic constraints, it may be driven, maintained and exaggerated by habitat type, climate and geographic location.

Journal of Evolutionary Biology↗

USGS2008

Species traits influence the genetic consequences of river fragmentation on two co-occurring redhorse (Moxostoma) species

We used microsatellite DNA markers to test whether fragmentation of the Trent River (Ontario, Canada) has reduced genetic diversity and increased genetic differentiation among populations of river redhorse (Moxostoma carinatum) and shorthead redhorse (Moxostoma macrolepidotum). Allelic richness of both species was significantly greater along the free-flowing Muskegon River (Michigan, USA) than along the fragmented Trent River. Contrary to expectations, there was no evidence of a fragment length effect on genetic diversity, recent population bottlenecks, or increased relatedness among individuals in fragmented populations. High levels of linkage disequilibrium indicate extinction-recolonization population dynamics along the Trent River. For both species, pairwise FST tests identified weak but statistically significant population differentiation. In the Trent River, differentiation was significantly greater for river redhorse than for shorthead redhorse and, for both species, greater than in the Muskegon River. Moderate fragmentation effects likely reflect the permeability of the dam-lock system to redhorse movement. Differences between species indicate that as a result of smaller effective population sizes, habitat specialists and species at the periphery of their geographic range are more sensitive to river fragmentation. ?? 2008 NRC.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS1996

Exchangeable hydrogen explains the pH of spodosol Oa horizons

The chemistry of extremely acid Oa horizons does not conform to traditional pH, Al, and base saturation relationships. Results from two separate studies of northeastern U.S. forested soils were used to investigate relationships between pH in water or dilute salt solutions and other soil characteristics. In Oa horizons with pH below 4, soil pH in dilute CaCl 2 solution was correlated with exchangeable H + measured either by titration ( r = −0.88, P = 0.0001, n = 142) or by electrode ( r = −0.89, P = 0.0001, n = 45). Exchangeable H + expressed as a percentage of the cation-exchange capacity (CEC) was linear with pH and showed similar slopes for data from both studies. For all samples, pHw = 4.21 − 1.80 × H + /CEC ( R 2 = 0.69, n = 194). The reciprocal of the H + /CEC ratio is base saturation with Al added to the bases. Because of the low pH, exchangeable Al does not appear to behave as an acid. Exchangeable H + remains an operationally defined quantity because of the difficulty in separating exchange and hydrolysis reactions. In a variety of neutral-salt extractants, concentrations of H + were correlated with 0.1 M BaCl 2 -exchangeable H + ( r > 0.91, P = 0.0001, n = 26) regardless of the strength of the extract. Nine successive extractions with 0.33 m M CaCl 2 removed more H + than was removed by single batch extractions with either 1 M KCl or 0.1 M BaCl 2 (average H + of 70, 43, and 49 mmol kg −1 , respectively for 26 samples). The data showed little difference in the chemical behavior of Oa horizons from a variety of geographical sites and vegetation types.

Maine, New Hampshire, New York, Vermont↗

USGS2012

Description of the U.S. Geological Survey Geo Data Portal data integration framework

The U.S. Geological Survey has developed an open-standard data integration framework for working efficiently and effectively with large collections of climate and other geoscience data. A web interface accesses catalog datasets to find data services. Data resources can then be rendered for mapping and dataset metadata are derived directly from these web services. Algorithm configuration and information needed to retrieve data for processing are passed to a server where all large-volume data access and manipulation takes place. The data integration strategy described here was implemented by leveraging existing free and open source software. Details of the software used are omitted; rather, emphasis is placed on how open-standard web services and data encodings can be used in an architecture that integrates common geographic and atmospheric data.

IEEE Journal of Selected Topics in Applied Earth O↗

USGS2005

Geographic variation in survival and migratory tendency among North American Common Mergansers

Movement ecology and demographic parameters for the Common Merganser ( Mergus merganser americanus ) in North America are poorly known. We used band-recovery data from five locations across North America spanning the years 1938–1998 to examine migratory patterns and estimate survival rates. We examined competing time-invariant, age-graduated models with program MARK to study sources of variation in survival and reporting probability. We considered age, sex, geographic location, and the use of nasal saddles on hatching year birds at one location as possible sources of variation. Year-of-banding was included as a covariate in a post-hoc analysis. We found that migratory tendency, defined as the average distance between banding and recovery locations, varied geographically. Similarly, all models accounting for the majority of variation in recovery and survival probabilities included location of banding. Models that included age and sex received less support, but we lacked sufficient data to adequately assess these parameters. Model-averaged estimates of annual survival ranged from 0.21 in Michigan to 0.82 in Oklahoma. Heterogeneity in migration tendency and survival suggests that demographic patterns may vary across geographic scales, with implications for the population dynamics of this species.

Journal of Field Ornithology↗

USGS2016

Potential distribution of the viral haemorrhagic septicaemia virus in the Great Lakes region

Viral haemorrhagic septicaemia virus (VHSV) genotype IVb has been responsible for large-scale fish mortality events in the Great Lakes of North America. Anticipating the areas of potential VHSV occurrence is key to designing epidemiological surveillance and disease prevention strategies in the Great Lakes basin. We explored the environmental features that could shape the distribution of VHSV, based on remote sensing and climate data via ecological niche modelling. Variables included temperature measured during the day and night, precipitation, vegetation, bathymetry, solar radiation and topographic wetness. VHSV occurrences were obtained from available reports of virus confirmation in laboratory facilities. We fit a Maxent model using VHSV-IVb reports and environmental variables under different parameterizations to identify the best model to determine potential VHSV occurrence based on environmental suitability. VHSV reports were generated from both passive and active surveillance. VHSV occurrences were most abundant near shore sites. We were, however, able to capture the environmental signature of VHSV based on the environmental variables employed in our model, allowing us to identify patterns of VHSV potential occurrence. Our findings suggest that VHSV is not at an ecological equilibrium and more areas could be affected, including areas not in close geographic proximity to past VHSV reports.

Great Lakes↗

USGS1990

Host-parasite relationships and geographic distribution of Salmincola corpulentus (Copepoda: Lernaeopodidae) on bloater ( Coregonus hoyi ) stocks in Lake Huron

Examination of the branchial cavities of 8347 adult bloaters ( Coregonus hoyi ) collected from seven locations in Lake Huron for parasitic copepods yielded only the lernaeopodid Salmincola corpulentus ; its distribution was limited to bloaters collected in the southern two-thirds of the lake. The infections were highest off Au Sable Point and on Six Fathom Bank, where 12 and 22%, of the bloaters examined were infected, respectively. All copepods seen were sexually mature females. The dorsal anterior portion of the branchial rim was the preferred site of attachment. The prevalence of S . corpulentus increased with length of the bloaters, reaching a maximum of 40% in fish longer than 330&ensp;mm; none were seen in bloaters shorter than 182&ensp;mm. The mean intensity of S . corpulentus was unusually low (1.0–1.9) for a lernaeopodid copepod and the maximum number of copepods found on a single bloater was five. Prevalences of copepods differed significantly ( P &ensp;<&ensp;0.05) between bloaters collected at different geographic locations, suggesting that S . corpulentus may be of value in bloater stock determination.

Canadian Journal of Zoology↗

USGS1980

Influence of a local source of DDT pollution on statewide DDT residues in waterfowl wings, northern Alabama, 1978-79

Heavy DDT contamination resulting from a former DDT manufacturing plant in northern Alabama has influenced statewide averages of DDT, DDE, and TDE residues in duck wings tested in the National Pesticide Monitoring Program. In states where contaminant levels in duck wings are high, residue analyses of wings categorized by finer geographic subdivision may be useful in defining the areas of heaviest contamination.

Pesticides Monitoring Journal↗

USGS1988

Decline in long-term growth trends of white oak

Quercus alba tree-ring collections from 89 locations throughout much of its range, from Connecticut to North Carolina to Iowa, were examined for evidence of growth decline initiated in the 1950s. The expected trend of annual basal area increments, based on pre-1950 growth, appears to be linear, with the slope varying among collections relative to site quality. Growth decline, defined as departure of actual growth below that expected, was identified in 40 to 60 collections judged to have not been affected by local site histories. The percentage of collections showing decline was essentially the same in the Northeast, the Midwest and the Southeast. Onset of decline began during a relatively narrow time window from the mid-1950's to the early 1960's. Since then the growth trend has been linear and appears unrelated to changes in regional sulfur and nitrogen oxide emissions. Events or conditions, unique to the 1950's, initiated a growth rate change in c 2/3 of the stands examined. Initiation of the decline appears to be unrelated to tree age, geographic location, site quality, climatic trends, or regional emissions of sulfur and nitrogen oxides. -from Authors

Canadian Journal of Forest Research↗

USGS2004

The U.S. Geological Survey Library

Established in 1879, to build and organize a collection of scientific materials in the earth sciences, the U.S. Geological Survey (USGS) Library is the largest earth sciences collection in the world. The USGS Library System is managed by the Geographic Information Office (GIO), Information Policy and Services Office, and includes four libraries in Reston, Va., Denver, Colo., Menlo Park, Calif., and Flagstaff, Ariz. The library holds over one million books and journals, 700,000 maps, 370,000 microforms, 270,000 pamphlets, and 250,000 photographs. In addition to the four libraries managed by the GIO, the USGS has smaller libraries in other locations with collections closely related to the specialized research of their local USGS scientists. The USGS Library System supports the research of USGS scientists by providing access to worldwide information resources. While continuing to build and maintain the large collections of maps, books, and periodicals, the USGS Library system is evolving from a traditional library to a more "virtual library." USGS employees, wherever they are located, have desktop access to an increasing wealth of electronic resources 24 hours a day, 7 days a week.

Fact Sheet↗

USGS1991

Spatial heterogeneity of mitochondrial DNA and allozymes among populations of white-tailed deer and mule deer

A white-tailed deer ( Odocoileus virginianus ) population in northeastern Minnesota and a mule deer ( O. hemionus ) population in the Bridger Mountains Montana, have previously been shown to be spatially subdivided into contiguous subpopulations. We assessed the degree of genetic differentiation among subpopulations and tested the hypothesis that differentiation will be greater for mitochondrial DNA (mtDNA) than for nuclear-encoded allozymes. Differentiation of the white-tailed deer subpopulations was significant for two allozyme loci but not for mtDNA, and the overall degree of differentiation was low. Gene flow, recent founding of the subpopulations, and polygamous breeding structure may all have contributed to this pattern. Greater differentiation was evident among disjunct populations than between the contiguous subpopulations of white-tailed deer. The contiguous mule deer subpopulations were significantly differentiated for mtDNA and one allozyme locus. Differentiation was greater for mtDNA than for allozymes. These results are consistent with demographic data that indicate mule deer males disperse more than do females. Disjunct mule deer populations may be similar or dramatically different in mtDNA haplotype frequencies that do not necessarily vary with geographic distance. Current and historical gene flow and breeding structure will influence population genetic patterns.

Journal of Heredity↗

USGS1984

Disseminated visceral coccidiosis in sandhill cranes

Disseminated visceral coccidiosis (DVC) caused by Eimeria spp was first recognized as a disease entity in captive sandhill cranes (Grus canadensis) and whooping cranes (G americana) at the Patuxent Wildlife Research Center. Because cranes produced at the Center are reintroduced to the wild to augment wild populations, studies involving both experimentally induced and natural infections were initiated to determine the potential or actual occurrence of DVC in wild Gruidae. Nine sandhill cranes dosed orally with eimerian oocysts of wild origin developed lesions characteristic of DVC. Extraintestinal granulomas associated with developing schizonts were found in 6 birds. Similar lesions were observed in wild sandhill cranes throughout parts of midwestern United States, Alaska, and Saskatchewan. These studies revealed the wide geographic distribution and the high frequency of occurrence of DVC in wild cranes.

Journal of the American Veterinary Medical Associa↗

USGS2015

Pairing call-response surveys and distance sampling for a mammalian carnivore

Density estimates accounting for differential animal detectability are difficult to acquire for wide-ranging and elusive species such as mammalian carnivores. Pairing distance sampling with call-response surveys may provide an efficient means of tracking changes in populations of coyotes ( Canis latrans ), a species of particular interest in the eastern United States. Blind field trials in rural New York State indicated 119-m linear error for triangulated coyote calls, and a 1.8-km distance threshold for call detectability, which was sufficient to estimate a detection function with precision using distance sampling. We conducted statewide road-based surveys with sampling locations spaced ≥6 km apart from June to August 2010. Each detected call (be it a single or group) counted as a single object, representing 1 territorial pair, because of uncertainty in the number of vocalizing animals. From 524 survey points and 75 detections, we estimated the probability of detecting a calling coyote to be 0.17 ± 0.02 SE, yielding a detection-corrected index of 0.75 pairs/10 km 2 (95% CI: 0.52–1.1, 18.5% CV) for a minimum of 8,133 pairs across rural New York State. Importantly, we consider this an index rather than true estimate of abundance given the unknown probability of coyote availability for detection during our surveys. Even so, pairing distance sampling with call-response surveys provided a novel, efficient, and noninvasive means of monitoring populations of wide-ranging and elusive, albeit reliably vocal, mammalian carnivores. Our approach offers an effective new means of tracking species like coyotes, one that is readily extendable to other species and geographic extents, provided key assumptions of distance sampling are met.

New York↗

USGS2000

Pathogenicity of avian malaria in experimentally-infected Hawaii Amakihi

The introduction of avian malaria (Plasmodium relictum) and mosquitoes (Culex quinquefasciatus) to the Hawaiian Islands (USA) is believed to have played a major role in the decline and extinction of native Hawaiian honeycreepers (Drepanidinae). This introduced disease is thought to be one of the primary factors limiting recovery of honeycreepers at elevations below 1,200 m where native forest habitats are still relatively intact. One of the few remaining species of honeycreepers with a wide elevational distribution is the Hawaii Amakihi (Hernignathus virens). We measured morbidity and mortality in experimentally-infected Hawaii Amakihi that were captured in a high elevation, xeric habitat that is above the current range of the mosquito vector. Mortality among amakihi exposed to a single infective mosquito bite was 65% (13/20). All infected birds had significant declines in food consumption and a corresponding loss in body weight over the 60 day course of the experiment. Gross and microscopic lesions in birds that succumbed to malaria included enlargement and discoloration of the spleen and liver and parasitemias as high as 50% of circulating erythrocytes. Mortality in experimentally-infected amakihi was similar to that observed in Apapane (Himnatione sanguinea) and lower than that observed in Iiwi (Vestiaria coccinea) infected under similar conditions with the same parasite isolate. We conclude that the current elevational and geographic distribution of Hawaiian honeycreepers is determined by relative susceptibility to avian malaria.

Hawaii↗

USGS1977

Mercury, arsenic, lead, cadmium, and selenium residues in fish, 1971-73--National Pesticide Monitoring Program.

As part of the National Pesticide Monitoring Program, the Fish and Wildlife Service, U.S. Department of Interior, analyzed selected fish samples from 100 monitoring stations for residues of mercury, arsenic, lead, cadmium, or selenium in 1971-73. At most stations, detectable residues of all metals were present in more than 95 percent of the composite samples. Fishes with mercury residues exceeding 0.5 mg/kg wet weight in the whole fish were mainly predators. Fishes with residues of arsenic, lead, cadmium, and selenium exceeding 0.5 mg/kg included predatory and nonpredatory species. The number of composite samples in which residues of these elements exceeded 0.5 mg/kg decreased from 1971 to 1973, whereas the percentage of samples with detectable residues increased slightly. Only selected samples were analyzed in 1973; therefore, these figures should be used only cautiously as trend data. Species of fish collected varied considerably between geographic regions but were similar from year to year within each region.

Pesticides Monitoring Journal↗