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At least 73 records · Page 4Linked to original sources
USGS2023

Sierra Nevada amphibians demonstrate stable occupancy despite precipitation volatility in the early 21st Century

Climate can have a strong influence on species distributions, and amphibians with different life histories might be affected by annual variability in precipitation in different ways. The Sierra Nevada of California, United States, experienced some of the driest and wettest years on record in the early 21st Century, with variability in annual precipitation predicted to increase with climate change. We examined the relationship between adult occupancy dynamics of three high elevation anurans and site and annual variation in measures of winter severity, summer wetness, and cumulative drought. We further evaluated how these weather conditions affected the probability that each species would reproduce, conditional on their occurrence at a site. We found that although different aspects of weather affected the occupancy dynamics of each species differently, adult occupancy probabilities were generally stable throughout our 15-year study period. The probability of reproduction, although slightly more variable than adult occupancy, was similarly stable throughout the study. Although occurrence of the three species was resilient to recent extremes in precipitation, more detailed demographic study would inform the extent to which amphibian populations will remain resilient to increasing severity, duration, and frequency of drought and flood cycles.

California↗
USGS2023

Sea level rise may pose conservation challenges for the endangered Cape Sable seaside sparrow

Biodiversity conservation under a changing climate is a challenging endeavor. Landscapes are shifting as a result of climate change and sea level rise but plant communities in particular may not keep up with the pace of change. Predictive ecological models can help decision makers understand how species are likely to respond to change and then adjust management actions to align with desired future conditions. Florida’s Everglades is a wetland ecosystem that is host to many species, including a large number of endangered and endemic species. Everglades ecosystem restoration has been ongoing for decades, but consideration of sea level rise impacts in restoration planning is more recent. Incorporating potential impacts from sea level rise into restoration planning should benefit species and their coastal habitats, most notably at the southern Florida peninsula. The endangered Cape Sable seaside sparrow ( Ammospiza maritima mirabilis ) occurs in marl prairie habitat at the southern end of the Everglades. The locations of three of its six subpopulations are proximate to the coast. We used a spatially explicit predictive model, EverSparrow, to estimate probability of sparrow presence considering both hydrologic change from restoration and sea level rise. We found that the probability of sparrow presence decreased with increasing sea level rise. Within approximately 50 years, probability of presence significantly decreased for all three coastal subpopulation areas, with areas above 40% probability increasingly limited. Given the exceptionally low dispersal ability of this species and the geographic restrictions for habitat expansion, our results highlight the importance of freshwater flow into the southern Everglades marl prairie for habitat conservation.

Florida↗
USGS2022

On the multiple identities of stakeholders in wolf management in Minnesota, United States

Social identity theory offers a means to understand attitudes about wolves, with consequences for management support. Using data from a mail survey about wolves, we explored relationships among seven identities (i.e., wolf advocate, hunter, environmentalist, nature enthusiast, farmer, trapper, conservationist) using multidimensional scaling (MDS) and principal components analysis (PCA). We examined how identities correlated with political ideology, trust in a wildlife management agency, wildlife value orientations (WVOs) and attitudes about wolves, and we evaluated whether WVOs mediated the relationship between identities and attitudes. PCA suggested two factors in identifying relationships among stakeholders, while MDS and correlations found diversity among stakeholders beyond these factors. Hunter identity was most strongly associated with a domination WVO and conservative political ideology. Farmer identity was most strongly associated with agency distrust and negative wolf attitudes. Wolf advocate was most strongly associated with a mutualism WVO (i.e., beliefs that humans are meant to coexist in harmonious relationships with wildlife), agency trust, and positive wolf attitudes. Conservationist identity was positively correlated with all other identities. WVOs partially mediated the relationship between identities and attitudes.

Minnesota↗
USGS2022

Functional wetland loss drives emerging risks to waterbird migration networks

Migratory waterbirds (i.e., shorebirds, wading birds, and waterfowl) rely on a diffuse continental network of wetland habitats to support annual life cycle needs. Emerging threats of climate and land-use change raise new concerns over the sustainability of these habitat networks as water scarcity triggers cascading ecological effects impacting wetland habitat availability. Here we use important waterbird regions in Oregon and California, United States, as a model system to examine patterns of landscape change impacting wetland habitat networks in western North America. Wetland hydrology and flooded agricultural habitats were monitored monthly from 1988 to 2020 using satellite imagery to quantify the timing and duration of inundation—a key delimiter of habitat niche values associated with waterbird use. Trends were binned by management practice and wetland hydroperiods (semi-permanent, seasonal, and temporary) to identify differences in their climate and land-use change sensitivity. Wetland results were assessed using 33 waterbird species to detect non-linear effects of network change across a diversity of life cycle and habitat needs. Pervasive loss of semi-permanent wetlands was an indicator of systemic functional decline. Shortened hydroperiods caused by excessive drying transitioned semi-permanent wetlands to seasonal and temporary hydrologies—a process that in part counterbalanced concurrent seasonal and temporary wetland losses. Expansion of seasonal and temporary wetlands associated with closed-basin lakes offset wetland declines on other public and private lands, including wildlife refuges. Diving ducks, black terns, and grebes exhibited the most significant risk of habitat decline due to semi-permanent wetland loss that overlapped important migration, breeding, molting, and wintering periods. Shorebirds and dabbling ducks were beneficiaries of stable agricultural practices and top-down processes of functional wetland declines that operated collectively to maintain habitat needs. Outcomes from this work provide a novel perspective of wetland ecosystem change affecting waterbirds and their migration networks. Understanding the complexity of these relationships will become increasingly important as water scarcity continues to restructure the timing and availability of wetland resources.

California, Nevada, Oregon↗
USGS2022

Temporal coherence patterns of prairie pothole wetlands indicate the importance of landscape linkages and wetland heterogeneity in maintaining biodiversity

Wetland ecosystems are diverse, productive habitats that are essential reservoirs of biodiversity. Not only are they home to numerous wetland-specialist species, but they also provide food, water, and shelter that support terrestrial wildlife populations. However, like observed patterns of biodiversity loss, wetland habitats have experienced widespread loss and degradation. In order to conserve and restore wetlands, and thereby the biodiversity they support, it is important to understand how biodiversity in wetland habitats is maintained. Habitat heterogeneity and connectivity are thought to be predominate drivers of wetland biodiversity. We quantified temporal coherence (i.e., spatial synchrony) of wetland invertebrate communities using intra-class correlations among 16 wetlands sampled continuously over 24 years to better understand the relative influences wetland heterogeneity (i.e., internal processes specific to individual wetlands and spatial connectivity and external processes occurring on the landscape) on wetland biodiversity. We found that while wetlands with different ponded-water regimes (temporarily ponded or permanently ponded) often hosted different invertebrate communities, temporal shifts in invertebrate composition were synchronous. We also found the relative importance of internal versus external forces in determining community assembly vary depending on a wetland’s hydrologic function and climate influences. Our results confirm that heterogeneity and spatial connectivity of wetland landscapes are important drivers of wetland biodiversity.

North Dakota↗
USGS2022

Survival and reproduction in Arctic caribou are associated with summer forage and insect harassment

Investigators have speculated that the climate-driven “greening of the Arctic” may benefit barren-ground caribou populations, but paradoxically many populations have declined in recent years. This pattern has raised concerns about the influence of summer habitat conditions on caribou demographic rates, and how populations may be impacted in the future. The short Arctic summer provides caribou with important forage resources but is also the time they are exposed to intense harassment by insects, factors which are both being altered by longer, warmer growing seasons. To better understand the effects of summer forage and insect activity on Arctic caribou demographic rates, we investigated the influence of estimated forage biomass, digestible energy (DE), digestible nitrogen (DN), and mosquito activity on the reproductive success and survival of adult females in the Central Arctic Herd on the North Slope of Alaska. We tested the hypotheses that greater early summer DN would increase subsequent reproduction (parturition and late June calving success) while greater biomass and DE would increase adult survival (September–May), and that elevated mosquito activity would reduce both demographic rates. Because the period when abundant forage DN is limited and overlaps with the period of mosquito harassment, we also expected years with low DN and high harassment to synergistically reduce caribou reproductive success. Examining these relationships at the individual-level, using GPS-collared females, and at the population-level, using long-term monitoring data, we generally found support for our expectations. Greater early summer DN was associated with increased subsequent calving success, while greater summer biomass was associated with increased adult survival. Mosquito activity was associated with reductions in adult female parturition, late June calving success, and survival, and in years with low DN, had compounding effects on subsequent late June calving success. Our findings indicate that summer nutrition and mosquito activity collectively influence the demographic rates of Arctic caribou, and may impact the dynamics of populations in the future under changing environmental conditions.

Alaska↗
USGS2022

Natural and anthropogenic factors influencing nesting ecology of the American crocodile in Florida, United States

Nesting ecology of American crocodiles ( Crocodylus acutus ) in Florida has been both positively and negatively influenced by anthropogenic and natural factors since the species was placed on the federally endangered species list in 1975. This includes a shift in nesting sites and an expansion of nesting to anthropogenic habitat. Using a 50-year record of monitoring data (1970-2020), we assessed factors influencing nesting ecology (number of nests, nest morphology, success rate, and habitat use) from a total of 3,013 nests recorded across South Florida. We detected a change in nesting success rate, increasing from 61% in the 1970’s to near 90% since 2010. Our hot spot analysis illustrates that nesting sites in northeastern Florida Bay and Flamingo/Cape Sable (Everglades National Park) were important for American crocodiles. Anthropogenic habitats, such as canals provided vital habitat nesting in areas such as Flamingo/Cape Sable (Everglades National Park), Turkey Point Power Plant, and Crocodile Lake National Wildlife Refuge for the current Florida population. Environmental parameters suspected to affect nesting success have shown an increasing trend over the past 50 years and minimum temperature and rainfall, during the summer season, are correlated with increased nesting success and temporal variation across South Florida. The adaptive capacity that American crocodiles exhibited in Florida gave the species advantages to face changes in climate and landscape over the last 50 years, however, it does not imply that the adaptive capacity of the species to face these changes (evolutionary potential) cannot reach a limit if changes continue. Here, we document C. acutus nesting ecology population responses to ecosystem restoration efforts in Florida; and further demonstrate the value of protecting and restoring habitat to support recovery of listed species.

Florida↗
USGS2022

Balancing future renewable energy infrastructure siting and associated habitat loss for migrating whooping cranes

The expansion of human infrastructure has contributed to novel risks and disturbance regimes in most ecosystems, leading to considerable uncertainty about how species will respond to altered landscapes. A recent assessment revealed that whooping cranes ( Grus americana ), an endangered migratory waterbird species, avoid wind-energy infrastructure during migration. However, uncertainties regarding collective impacts of other types of human infrastructure, such as power lines on migration, variable drought conditions, and continued construction of wind energy infrastructure may compromise ongoing recovery efforts for whooping cranes. Droughts are increasing in frequency and severity throughout the whooping crane migration corridor, and the impacts of drought on stopover habitat use are largely unknown. Moreover, decision-based analyses are increasingly advocated to guide recovery planning for endangered species, yet applications remain rare. Using GPS locations from 57 whooping cranes from 2010 through 2016 in the United States Great Plains, we assessed habitat selection and avoidance of potential disturbances during migration relative to drought conditions, and we used these results in an optimization analysis to select potential sites for new wind energy developments that minimize relative habitat loss for whooping cranes and maximize wind energy potential. Drought occurrence and severity varied spatially and temporally across the migration corridor during our study period. Whooping cranes rarely used areas <5 km from human settlements and wind energy infrastructure under both drought and non-drought conditions, and <2 km from power lines during non-drought conditions, with the lowest likelihood of use near wind energy infrastructure. Whooping cranes differed in their selection of wetland and cropland land cover types depending on drought or non-drought conditions. We identified scenarios for wind energy expansion across the migration corridor and in select states, which are robust to uncertain drought conditions, where future loss of highly selected stopover habitats could be minimized under a common strategy. Our approach was to estimate functional habitat loss while integrating current disturbances, potential future disturbances, and uncertainty in drought conditions. Therefore, dynamic models describing potential costs associated with risk-averse behaviors resulting from future developments can inform proactive conservation before population impacts occur.

Kansas, Montana, Nebraska, North Dakota, South Dak↗
USGS2022

A call to action: Standardizing white-tailed deer harvest data in the Midwestern United States and implications for quantitative analysis and disease management

Recreational hunting has been the dominant game management and conservation mechanism in the United States for the past century. However, there are numerous modern-day issues that reduce the viability and efficacy of hunting-based management, such as fewer hunters, overabundant wildlife populations, limited access, and emerging infectious diseases in wildlife. Quantifying the drivers of recreational harvest by hunters could inform potential management actions to address these issues, but this is seldom comprehensively accomplished because data collection practices limit some analytical applications (e.g., differing spatial scales of harvest regulations and harvest data). Additionally, managing large-scale issues, such as infectious diseases, requires collaborations across management agencies, which is challenging or impossible if data are not standardized. Here we discuss modern issues with the prevailing wildlife management framework in the United States from an analytical point of view with a case study of white-tailed deer ( Odocoileus virginianus ) in the Midwest. We have four aims: (1) describe the interrelated processes that comprise hunting and suggest improvements to current data collections systems, (2) summarize data collection systems employed by state wildlife management agencies in the Midwestern United States and discuss potential for large-scale data standardization, (3) assess how aims 1 and 2 influence managing infectious diseases in hunted wildlife, and (4) suggest actionable steps to help guide data collection standards and management practices. To achieve these goals, Wisconsin Department of Natural Resources disseminated a questionnaire to state wildlife agencies (Illinois, Indiana, Iowa, Kentucky, Michigan, Minnesota, Missouri, Ohio, Wisconsin), and we report and compare their harvest management structures, data collection practices, and responses to chronic wasting disease. We hope our “call to action” encourages re-evaluation, coordination, and improvement of harvest and management data collection practices with the goal of improving the analytical potential of these data. A deeper understanding of the strengths and deficiencies of our current management systems in relation to harvest and management data collection methods could benefit the future development of comprehensive and collaborative management and research initiatives (e.g., adaptive management) for wildlife and their diseases.

Illinois, Indiana, Iowa, Kentucky, Michigan, Minne↗
USGS2022

Methods for robust estimates of tree biomass from pollen accumulation rates: Quantifying paleoecological reconstruction uncertainty

Pollen accumulation rates (PAR, grains cm –2 year –1 ) have been shown to be a reliable but methodologically complex bioproxy for quantitative reconstruction of past tree abundance. In a prior study, we found that the PARs of major tree taxa – Pseudotsuga , Pinus , Notholithocarpus , and the pollen group TC (Taxaceae and Cupressaceae families) – were robust and precise estimators of contemporary tree biomass. This paper expands our earlier work. Here, we more fully evaluate the errors associated with biomass reconstructions to identify weaknesses and recommend improvements in PAR-based reconstructions of forest biomass. We account for uncertainty in our biomass proxy in a formal, coherent fashion. The greatest error was introduced by the age models, underscoring the need for improved statistical approaches to age-depth modeling. Documenting the uncertainty in pollen vegetation models should be standard practice in paleoecology. We also share insights gained from the delineation of the relevant source area of pollen, advances in Bayesian 210 Pb modeling, the importance of site selection, and the use of independent data to corroborate biomass estimates. Lastly, we demonstrate our workflow with a new dataset of reconstructed tree biomass between 1850 and 2018 AD from lakes in the Klamath Mountains, California. Our biomass records followed a broad trend of low mean biomass in the ∼1850s followed by large contemporary increases, consistent with expectations of forest densification due to twentieth century fire suppression policies in the American West. More recent reconstructed tree biomass estimates also corresponded with silviculture treatments occurring within the relevant source area of pollen of our lake sites.

California↗
USGS2022

Identifying shared priorities for a bioregional approach to restoration in the Northern Gulf of Mexico

Natural resource management is often challenged with a mismatch between the scale of decision-making and the scale of the biological, ecological, and physical processes that control a system. Bioregional approaches to adaptive management have emerged as an approach to inform natural resource management at ecologically relevant scales and across multi-level governance structures. The implementation of adaptive management requires the determination of ecological and social priorities that can inform a desired system state across multiple governing bodies. We use the Northern Gulf of Mexico, United States, as a case study for a bioregional approach to adaptive management and illustrate a method for developing objectives and management priorities across programs and jurisdictions. Through this synthesis, using qualitative coding methods to develop a shared vocabulary across the diverse dataset, we identified commonalities and differences in ecological and human community priorities across the five states which line the Northern Gulf of Mexico. Using these shared priorities, we conceptualize a network of priority-focused objectives as a starting point for further stakeholder engagement and effectively monitoring and evaluating progress across boundaries. This approach serves as a framework for cross-program adaptive management by illustrating a desired system state that reflects the shared priorities among decision-making authorities in this region and offering individual programs or projects a method to articulate their contributions to the broader set of shared priorities Gulf-wide. This method can be used by restoration managers in any region of the world to align project objectives within cross-jurisdictional boundaries and illustrate the value of a bioregional approach to restoration.

Gulf of Mexico↗
USGS2022

Editorial: Fire regimes in desert ecosystems: Drivers, impacts and changes

Although not commonly associated with fire, many desert ecosystems across the globe do occasionally burn, and there is evidence that fire incidences are increasing, leading to altered fire regimes in this biome. The increased prevalence of megafires (wildfires >10,000 ha in size and typically damaging) in most global biomes is linked to climate change, although those occurring in deserts have received far less attention, from both a research and policy perspective, than that of forested ecosystems ( Linley et al., 2022 ). Understanding the drivers of desert fires, from climate to landscape patterns of hydrology and soil, and how these may be changing in the face of anthropogenic pressures, such as invasive species, livestock grazing, and global climate change, is imperative. This Research Topic has published nine papers addressing these drivers, how they have changed, and their impacts on desert biodiversity.

Frontiers in Ecology and Evolution↗
USGS2022

Using paleoecological data to inform decision making: A deep-time perspective

Latest climate models project conditions for the end of this century that are generally outside of the human experience. These future conditions affect the resilience and sustainability of ecosystems, alter biogeographic zones, and impact biodiversity. Deep-time records of paleoclimate provide insight into the climate system over millions of years and provide examples of conditions very different from the present day, and in some cases similar to model projections for the future. In addition, the deep-time paleoecologic and sedimentologic archives provide insight into how species and habitats responded to past climate conditions. Thus, paleoclimatology provides essential context for the scientific understanding of climate change needed to inform resource management policy decisions. The Pliocene Epoch (5.3–2.6 Ma) is the most recent deep-time interval with relevance to future global warming. Analysis of marine sediments using a combination of paleoecology, biomarkers, and geochemistry indicates a global mean annual temperature for the Late Pliocene (3.6–2.6 Ma) ∼3°C warmer than the preindustrial. However, the inability of state-of-the-art climate models to capture some key regional features of Pliocene warming implies future projections using these same models may not span the full range of plausible future climate conditions. We use the Late Pliocene as one example of a deep-time interval relevant to management of biodiversity and ecosystems in a changing world. Pliocene reconstructed sea surface temperatures are used to drive a marine ecosystem model for the North Atlantic Ocean. Given that boundary conditions for the Late Pliocene are roughly analogous to present day, driving the marine ecosystem model with Late Pliocene paleoenvironmental conditions allows policymakers to consider a future ocean state and associated fisheries impacts independent of climate models, informed directly by paleoclimate information.

Frontiers in Ecology and Evolution↗
USGS2022

Bacteria common to rhizosphere communities of Asiatic bittersweet across a post-glacial landscape

Invasive plants such as Asiatic bittersweet ( Celastrus orbiculatus Thunb.) are a significant problem for land managers as they impact plant species composition, disrupt nutrient dynamics and structure of native ecosystems, and are difficult to eradicate. As a result of the increasing abundance of Asiatic bittersweet across the eastern U.S., we have been investigating underlying factors potentially contributing to the success of this plant. Recently, ecologists have been investigating the role of plant-soil-microbe interactions contributing to plant invasion. This work has led to question: are there certain microbes (e.g., bacteria, fungi) contributing to the success of some invasive plants? We hypothesize that despite differences in geologic age of soils where Asiatic bittersweet has established in the Indiana Dunes National Park there are sufficient common factors that led to common bacterial taxa in their rhizosphere. The objectives were to determine differences and commonalities in the soil chemistry, plant community and bacterial communities of Asiatic bittersweet plants. To achieve these objectives, bittersweet plants were collected at thirteen locations in the national park from soils ranging in geologic age from 150 to over 14,500 years. Surrounding soil chemistry, plant cover and the 16S rRNA gene amplicon sequences of rhizosphere soil bacterial communities of these Asiatic bittersweet were compared. Asiatic bittersweet coverage of sampling sites ranged from 2 to 77% averaging 52 ± 2%. There were statistically significant differences ( p < 0.05) in alpha diversity (Shannon, Faith’s PD and Pielou’s evenness) and beta diversity (Bray Curtis, Jaccard, unweighted Unifrac, weighted Unifrac) among the samples when grouped by soil age or habitat. Despite these differences in the bacterial communities from different soil ages and habitats, some bacterial taxa (e.g., Bacillus, Streptomyces, Sphingomonas and Rhizobiales) previously found in other studies to be beneficial to plant growth were found in every rhizosphere community sampled. These microbes provide insight into a possible contributing factor to the success of this invasive plant at the Indiana Dunes National Park, and a strategy for future work to reduce the impact of Asiatic bittersweet establishment and offer some new strategies to manage this nuisance species.

Frontiers of Ecology and Evolution↗
USGS2023

Effects of environment and metacommunity delineation on multiple dimensions of stream fish beta diversity

Introduction: Beta diversity represents changes in community composition among locations across a landscape. While the effects of human activities on beta diversity are becoming clearer, few studies have considered human effects on the three dimensions of beta diversity: taxonomic, functional, and phylogenetic. Including anthropogenic factors and multiple dimensions of biodiversity may explain additional variation in stream fish beta diversity, providing new insight into how metacommunities are structured within different spatial delineations. Methods: In this study, we used a 350 site stream fish abundance dataset from South Carolina, United States to quantify beta diversity explainable by spatial, natural environmental, and anthropogenic variables. We investigated three spatial delineations: (1) a single whole-state metacommunity delineated by political boundaries, (2) two metacommunities delineated by a natural geomorphic break separating uplands from lowlands, and (3) four metacommunities delineated by natural watershed boundaries. Within each metacommunity we calculated taxonomic, functional, and phylogenetic beta diversity and used variation partitioning to quantify spatial, natural environmental, and anthropogenic contributions to variations in beta diversity. Results: We explained 25–81% of the variation in stream fish beta diversity. The importance of these three factors in structuring metacommunities differed among the diversity dimensions, providing complementary perspectives on the processes shaping beta diversity in fish communities. The effect of spatial, natural environmental, and anthropogenic factors varied among the spatial delineations, which indicate conclusions drawn from variation partitioning may depend on the spatial delineation chosen by researchers. Discussion: Our study highlights the importance of considering human effects on metacommunity structure, quantifying multiple dimensions of beta diversity, and careful consideration of user-defined metacommunity boundaries in beta diversity analyses.

South Carolina↗
USGS2023

The Everglades vulnerability analysis: Linking ecological models to support ecosystem restoration

Understanding of the Everglades’ ecological vulnerabilities and restoration needs has advanced over the past decade but has not been applied in an integrated manner. To address this need, we developed the Everglades Vulnerability Analysis (EVA), a decision support tool that uses modular Bayesian networks to predict the ecological outcomes of a subset of the ecosystem’s health indicators. This tool takes advantage of the extensive modeling work already done in the Everglades and synthesizes information across indicators of ecosystem health to forecast long-term, landscape-scale changes. In addition, the tool can predict indicator vulnerability through comparison to user-defined ideal system states that can vary in the level of certainty of outcomes. An integrated understanding of the Everglades system is essential for evaluation of trade-offs at local, regional, and system-wide scales. Through EVA, Everglades restoration decision makers can provide effective guidance during restoration planning and implementation processes to mitigate unintended consequences that could result in further damage to the Everglades system.

Florida↗
USGS2023

DNA virome composition of two sympatric wild felids, bobcat (Lynx rufus) and puma (Puma concolor) in Sonora, Mexico

With viruses often having devastating effects on wildlife population fitness and wild mammals serving as pathogen reservoirs for potentially zoonotic diseases, determining the viral diversity present in wild mammals is both a conservation and One Health priority. Additionally, transmission from more abundant hosts could increase the extinction risk of threatened sympatric species. We leveraged an existing circular DNA enriched metagenomic dataset generated from bobcat ( Lynx rufus , n = 9) and puma ( Puma concolor , n = 13) scat samples non-invasively collected from Sonora, Mexico, to characterize fecal DNA viromes of each species and determine the extent that viruses are shared between them. Using the metaWRAP pipeline to co-assemble viral genomes for comparative metagenomic analysis, we observed diverse circular DNA viruses in both species, including circoviruses, genomoviruses, and anelloviruses. We found that differences in DNA virome composition were partly attributed to host species, although there was overlap between viruses in bobcats and pumas. Pumas exhibited greater levels of alpha diversity, possibly due to bioaccumulation of pathogens in apex predators. Shared viral taxa may reflect dietary overlap, shared environmental resources, or transmission through host interactions, although we cannot rule out species-specific host-virus coevolution for the taxa detected through co-assembly. However, our detection of integrated feline foamy virus (FFV) suggests Sonoran pumas may interact with domestic cats. Our results contribute to the growing baseline knowledge of wild felid viral diversity. Future research including samples from additional sources (e.g., prey items, tissues) may help to clarify host associations and determine the pathogenicity of detected viruses.

Sonora↗
USGS2023

Elevated road segment (ERS) passage design may provide enhanced connectivity for amphibians, reptiles, and small mammals

Introduction: Designs for safe and effective road crossing structures for small animals are typically under-road microtunnels and culverts which have varying levels of effectiveness reported in the scientific literature. Many species, particularly migratory amphibians, may have limited ability to find and use passages if they are too far apart, resulting in substantial barrier effects. Methods: We designed a novel open elevated passage (elevated road segment: ERS), similar to a low terrestrial bridge, that could theoretically be built to any length based upon species needs and movement characteristics. A 30 m length prototype ERS was installed along a forest road with a history of amphibian road mortality in Sierra National Forest, Fresno County, CA, USA. From 2018 to 2021, we monitored small animal activity under the ERS in relation to surrounding roadside and forest habitats using active infrared cameras. Results: We documented a total of 8,815 unique use events, using species specific independence criteria, across 22 species of amphibians (3), reptiles (4), and small mammals (15). Poisson regression modeling of taxonomic group activity under the ERS, roadside and forest, showed that amphibian activity was highest in the forest habitat, no differences were observed for reptiles, and small mammal activity was highest under the ERS. However, mean activity estimates under the ERS were equal to or greater than the open roadside habitat for all 22 species, suggesting that adding cover objects, such as downed logs and vegetation may further enhance passage use. Discussion: Overall, results showed that the design of the ERS crossing has potential to provide high connectivity for a wide range of amphibian, reptile, and small mammal species while reducing road mortality. ERS systems can also be used in areas with challenging terrain and other hydrological and environmental constraints. Incorporating current road ecology science, we provide supplemental ERS concept designs for secondary roads, primary roads and highways to help increase the options available for road mitigation planning for small animals.

California↗