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USGS2021

Be a wolf researcher! Wolf pup ethogram

Ethology is the study of behavior, and an ethogram is a list of behaviors, typically of a single species. For this ethogram we have selected a few representative behaviors that pups will exhibit during various growth phases, and therefore, this ethogram is not exhaustive. You will likely observe behaviors not detailed in this booklet (be sure to keep notes of your observations on the pages in the back). We hope you will get a chance to observe all the representative behaviors of each growth phase (check them off on your ethogram’s checklist) by visiting the wolves here in Ely at the International Wolf Center or by “visiting” them online via the wolf cams.

Book↗
USGS2012

Hydrological information products for the Off-Project Water Program of the Klamath Basin Restoration Agreement

The Klamath Basin Restoration Agreement (KBRA) was developed by a diverse group of stakeholders, Federal and State resource management agencies, Tribal representatives, and interest groups to provide a comprehensive solution to ecological and water-supply issues in the Klamath Basin. The Off-Project Water Program (OPWP), one component of the KBRA, has as one of its purposes to permanently provide an additional 30,000 acre-feet of water per year on an average annual basis to Upper Klamath Lake through "voluntary retirement of water rights or water uses or other means as agreed to by the Klamath Tribes, to improve fisheries habitat and also provide for stability of irrigation water deliveries." The geographic area where the water rights could be retired encompasses approximately 1,900 square miles. The OPWP area is defined as including the Sprague River drainage, the Sycan River drainage downstream of Sycan Marsh, the Wood River drainage, and the Williamson River drainage from Kirk Reef at the southern end of Klamath Marsh downstream to the confluence with the Sprague River. Extensive, broad, flat, poorly drained uplands, valleys, and wetlands characterize much of the study area. Irrigation is almost entirely used for pasture. To assist parties involved with decisionmaking and implementation of the OPWP, the U.S. Geological Survey (USGS), in cooperation with the Klamath Tribes and other stakeholders, created five hydrological information products. These products include GIS digital maps and datasets containing spatial information on evapotranspiration, subirrigation indicators, water rights, subbasin streamflow statistics, and return-flow indicators. The evapotranspiration (ET) datasets were created under contract for this study by Evapotranspiration, Plus, LLC, of Twin Falls, Idaho. A high-resolution remote sensing technique known as Mapping Evapotranspiration at High Resolution and Internalized Calibration (METRIC) was used to create estimates of the spatial distribution of ET. The METRIC technique uses thermal infrared Landsat imagery to quantify actual evapotranspiration at a 30-meter resolution that can be related to individual irrigated fields. Because evaporation uses heat energy, ground surfaces with large ET rates are left cooler as a result of ET than ground surfaces that have less ET. As a consequence, irrigated fields appear in the Landsat images as cooler than nonirrigated fields. Products produced from this study include total seasonal and total monthly (April-October) actual evapotranspiration maps for 2004 (a dry year) and 2006 (a wet year). Maps showing indicators of natural subirrigation were also provided by this study. "Subirrigation" as used here is the evapotranspiration of shallow groundwater by plants with roots that penetrate to or near the water table. Subirrigation often occurs at locations where the water table is at or above the plant rooting depth. Natural consumptive use by plants diminishes the benefit of retiring water rights in subirrigated areas. Some agricultural production may be possible, however, on subirrigated lands for which water rights are retired. Because of the difficulty in precisely mapping and quantifying subirrigation, this study presents several sources of spatially mapped data that can be used as indicators of higher subirrigation probability. These include the floodplain boundaries defined by stream geomorphology, water-table depth defined in Natural Resources Conservation Service (NRCS) soil surveys, and soil rooting depth defined in NRCS soil surveys. The two water-rights mapping products created in the study were "points of diversion" (POD) and "place of use" (POU) for surface-water irrigation rights. To create these maps, all surface-water rights data, decrees, certificates, permits, and unadjudicated claims within the entire 1,900 square mile study area were aggregated into a common GIS geodatabase. Surface-water irrigation rights within a 5-mile buffer of the study area were then selected and identified. The POU area was then totaled by water right for primary and supplemental water rights. The maximum annual volume (acre-feet) allowed under each water right also was calculated using the POU area and duty (allowable annual irrigation application in feet). In cases where a water right has more than one designated POD, the total volume for the water right was equally distributed to each POD listed for the water right. Because of this, mapped distribution of diversion rates for some rights may differ from actual practice. Water-right information in the map products was from digital datasets obtained from the Oregon Water Resources Department and was, at the time acquired, the best available compilation of water-right information available. Because the completeness and accuracy of the water-right data could not be verified, users are encouraged to check directly with the Oregon Water Resources Department where specific information on individual rights or locations is essential. A dataset containing streamflow statistics for 72 subbasins in the study area was created for the study area. The statistics include annual flow durations (5-, 10-, 25-, 50-, and 95-percent exceedances) and 7-day, 10-year (7Q10) and 7-day, 2-year (7Q2) low flows, and were computed using regional regression equations based on measured streamflow records in the region. Daily streamflow records used were adjusted as needed for crop consumptive use; therefore the statistics represent streamflow under more natural conditions as though irrigation diversions did not exist. Statistics are provided for flow rates resulting from streamflow originating from within the entire drainage area upstream of the subbasin pour point (referring to the outlet of the contributing drainage basin). The statistics were computed for the purpose of providing decision makers with the ability to estimate streamflow that would be expected after water conservation techniques have been implemented or a water right has been retired. A final product from the study are datasets of indicators of the potential for subsurface return flow of irrigation water from agricultural areas to nearby streams. The datasets contain information on factors such as proximity to surface-water features, geomorphic floodplain characteristics, and depth to water. The digital data, metadata, and example illustrations for the datasets described in this report are available on-line from the USGS Water Resources National Spatial Data Infrastructure (NSDI) Node Website http://water.usgs.gov/lookup/getgislist or from the U.S. Government website DATA.gov at http://www.data.gov with links provided in a Microsoft® Excel® workbook in appendix A.

California;Oregon↗
USGS1993

SPECtrum Processing Routines User's Manual Version 3 (program SPECPR)

Introduction The SPECtrum Processing Routines (SPECPR) is a large-scale interactive program for general one-dimensional array processing and optimized for reflectance spectroscopy data and analysis. The program processes one-dimensional arrays up to 4852 data points and the operations include addition, subtraction, multiplication, division, trigonometric functions, logarithmic and exponential functions, and many more specialized routines. The Specpr user interface is a menu driven, character command system with all user input entered as ascii characters to the program. User commands are thoroughly checked for the context in which they will be used. This provides for essentially all user input mistakes to be caught and appropriate error messages to be issued. The user interface also allows for command aliasing, variable substitutions, command history and batch command processing to occur at any point in the program. The user can also control his or her own variables, increment and decrement them, and monitor certain internal variables. This flexibility allows for sophisticated programming, e.g. from specific computations, to management of a database. All arrays are treated as one dimensional lists of numbers, each with an appropriate header for identification and history. Any array can be plotted versus another array, and each axis labeled appropriately. For example, you may plot a reflectance spectrum versus wavelength or wavelength versus reflectance. The array type is simply a label, so data like temperature versus time can be treated just as easily as a reflectance spectrum. Some routines are specific to certain purposes, however. For example, the Planck black body generator is specific to intensity versus wavelength, whereas a smoothing routine could operate equally on reflectance versus wavelength or temperature versus time. Each array element can have an error bar associated with it and errors are propagated through all appropriate routines. Data points can be marked deleted and deleted points are tracked appropriately. These features allow the program to be effectively used on real world data. This philosophy has resulted in a flexible system for which a user can manipulate data arrays efficiently. The program was designed for analysis of laboratory, field, telescopic, and spacecraft spectroscopic data, and although general in nature, there are biases built in. For example, horizontal axis labels default to wavelength in micrometers, but the defaults can be changed. Because of the orientation in Specpr to process planetary and terrestrial data, and the need to access such data, Specpr has been extended to have access to non-Specpr default file types. In particular, Specpr can "skewer" an 3-dimensional (3D) data file along any of the three axes. Further, block skewers can be done with the standard deviation of the mean computed for each channel in the block. Currently, Specpr can access any of the standard file types common in the terrestrial and planetary remote sensing communities. Details on 3D file I/O are given in Chapter 6. Specpr has multiple record types available within a single Specpr data file. Currently defined record types are data and text. In a data record, a standard one-dimensional array is held, along with its header information. The header information includes a title, history, dates and time of data acquisition and when the data were last processed, the user who processed the data, information typical of a spectrum like temperature and viewing geometry, as well as pointers to wavelengths, resolution, and text. If a spectrum is more than 256 channels in length, then the data gets put in succeeding records in the file, and the following records are continuation records. The second record type is the text, where a title and a block of text (up to 19 kbytes) can be stored. This record type is typically used for a description of samples, experiments, instruments, or data processing for a particular data set. It could also store the actual commands used to create a spectrum. The commands for a complicated plot for a publication might be stored in a text record. That way, you can easily regenerate the plot, or even write the commands to a non-Specpr file, modify them with any editor and re-execute them. The file types, text and command processing, combined with the math and special functions, provide for very powerful and general analysis tool. These facilities also provide the framework for database management.

Open-File Report↗
USGS1992

Geohydrology and water quality of stratified-drift aquifers in the lower Merrimack and coastal river basins, southeastern New Hampshire

Communities in the lower Merrimack River basin and coastal river basins of southeastern New Hampshire are experiencing increased demands for water because of a rapid increase in population. The population in 1987 was 225,495 and is expected to increase by 30 percent during the next decade. As of 1987, five towns used the stratified-drift aquifers for municipal supply and withdrew an estimated 6 million gallons per day. Four towns used the bedrock aquifer for municipal supply and withdrew an average of 1 .6 million gallons per day. Stratified-drift deposits cover 78 of the 327 square miles of the study area. These deposits are generally less than 10 square miles in areal extent, and their saturated thickness ranges front less than 20 feet to as much as 100 feet . Transinissivity exceeds 4,000 square feet per day in several locations. Stratified-drift aquifers in the eastern part are predominantly small ice-contact deposits surrounded by marine sediments or till of low hydraulic conductivity. Stratified-drift aquifers in the western part consist of ice-contact and proglacial deposits that are large in areal extent and are commonly in contact with surface-water bodies. Five stratified-drift aquifers, in the towns of Derry, Windham, Kingston, North Hampton, and Greenland, have the greatest potential to supply additional amounts of water. Potential yields and contributing areas of hypothetical supply wells were estimated for an aquifer in Windham near Cobbetts Pond and for an aquifer in Kingston along the Powwow River by use of a method analogous to superposition in conjunction with a numerical ground-waterflow model. The potential yield is estimated to be 0 .6 million gallons per day for the Windham-Cobbetts Pond aquifer and 4 .0 million gallons per day for the Kingston-Powwow River aquifer. Contributing recharge area for supply wells is estimated to be 1.6 square miles in the Windham-Cobbetts Pond aquifer and 4.9 square miles in the Kingston-Powwow River aquifer. Analyses of water samples from 30 wells indicate that the water quality in the basins studied is generally suitable for drinking and other domestic purposes. Concentrations of iron and manganese exceeded the U.S . Environmental Protection Agency's (USEPA) and the New Hampshire Water Supply Engineering Bureau's secondary maximum contaminant levels for drinking water in 20 samples. With one exception, concentrations of volatile organic compounds at all wells sampled met New Hampshire Water Supply and Engineering Bureau's drinking-water standards. At one well, trichloroethylene was detected at a concentration of 5.7 micrograms per liter. Ground-water contamination has been detected at several hazardous-waste sites in the study area. Currently, 5 sites are on the USEPA's National Priority List of superfund sites, 10 sites are Resource Conservation and Recovery Act of 1976 sites, and 1 site is a Department of Defense hazardous-waste site of stratigraphic layers is a product of a material's density and the velocity at which sound travels through that material . The reflected signals return to the hydrophones at the water surface and are then filtered, amplified, and displayed graphically on the chart recorder to allow interpretation of aquifer stratigraphy and bedrock depths. Lithologic data from nearby wells and test holes were used as control points to check the interpretation of the reflection profiles. Test drilling was done at 66 locations (pls . 1-3) to determine sediment grain size, stratigraphy, depth to water table, depth to bedrock, and ground water quality . A 6-inch-diameter, hollow-stem auger was used for test drilling . Split-spoon samples of subsurface materials collected at specific depths were used to evaluate the grain-size characteristics and identify the stratigraphic sequence of materials comprising the aquifers . Thirty-eight test holes cased with a 2-inch-diameter polyvinyl-chloride (PVC) pipe and slotted screens were used to make ground-water-level measurements and collect ground-water-quality samples. Surface-water-discharge measurements were made at 16 sites during low flow when the surface water is primarily ground-water discharge . These low-flow measurements indicate quantities of ground water potentially available from aquifers. Hydraulic conductivities of aquifer materials were estimated from grain-size-distribution data from 61 samples of stratified drift . Transmissivity was estimated from well logs by assigning hydraulic conductivity to specific well-log intervals, multiplying by the saturated thickness of the interval, and summing the results . Additional transmissivity values were obtained from an analysis of specific capacity and aquifer-test data. Long-term aquifer yields and contributing areas to hypothetical supply wells were estimated by application of a method that is analogous to super position and incorporates a ground-water-flow model developed by McDonald and Harbaugh (1988) . This method was applied to two aquifers judged to have the best potential for providing additional ground-water supplies. Samples of ground water from 26 test wells and 4 municipal wells were collected in March and August 1987 for analysis of common inorganic, organic, and volatile organic constituents. Methods for collecting and analyzing the samples are described by Fishman and Freidman (1989) . The water-quality results from the well samples were used to characterize background water quality in the stratified-drift aquifers.

New Hampshire↗
USGS2000

Elk-effects vegetation monitoring program for Tomales Point Elk Range, Point Reyes National Seashore, California

The monitoring program for elk effects on Tomales Point vegetation is designed to provide information on how tule elk grazing affects plant communities and rare species. The basic objective of the program is to show whether the elk are driving the vegetation into an unacceptable state by their grazing. The expectation is that as elk numbers increase, grazing pressure will increase too, resulting in unacceptable levels of any or all of the following: low vegetation ground cover, poor nutritional quality for the elk, undesirable increases in weedy species, unacceptable loss of native plant biodiversity, population declines in rare plants, population declines in plants used for food and nectar by the endangered silverspot butterfly, and increased erosion. The monitoring program has 3 basic components designed to provide complementary information on different aspects of the elk-vegetation system. Long-term plant community monitoring along permanent transects will show how plant species composition and cover are changing since cattle removal in 1979, and it will show whether any of he undesirable traits listed above are developing in the vegetation. However, monitoring these transects alone will not tell us what the effects of continued grazing by elk are apart from changes the vegetation would be undergoing anyway. In order to tease apart the elk effects from change that is happening because of cattle removal, elk exclosures are needed. By sampling inside and outside exclosures, we will be able to see how elk are modifying the rates and directions of change in the vegetation that would be happening in their absence. In a sense, the exclosures serve as a “check” on elk effects. They will allow us to interpret how much of the change is due to elk and how much can be attributed to other processes such as natural succession or weather patterns. This information will allow us to analyze whether changing elk management will have a desirable effect on the vegetation. Finally, periodic mapping and counting of plants in rare plant populations will show whether plant population ranges are expanding and populations are stable or growing. If not, then management actions can be taken to improve habitat conditions for the plants. A general summary of the rationale and sample design for each of the 3 components of the elk-effects monitoring program follows. Field sampling for the entire program should require about 15 weeks for a 2 to 3- person team, and data processing, analysis, and report writing should require about 9 weeks. Time and labor estimates for this program are given in Table A-1. In addition to elk-effects monitoring, Point Reyes staff periodically monitor fire transects and residual dry matter plots on Tomales Point. They are not included as part of the elk-effects monitoring program and they are described elsewhere. Protocols for fire and residual dry matter sampling are not included in the time estimate for the elk- effects monitoring program.

Open-File Report↗
USGS1942

Correlation of the outcropping cretaceous formations of the Atlantic and Gulf Coastal Plain and trans-Pecos Texas

This is Number 9 of a series of correlation charts prepared by the Committee on Stratigraphy of the National Research Council, which will cover the post-Proterozoic sedimentary formations of North America. For general information about the project the reader is referred to the general introduction preceding this paper. The senior author, Lloyd W. Stephenson, is responsible for that part of the chart treating of the Upper Cretaceous series in the Atlantic and Gulf Coastal Plain (exceptions noted below) and the Lower Cretaceous series of the North Atlantic Coastal Plain; with respect to the Upper Cretaceous his presentation is based largely on his personal knowledge of the paleontology and stratigraphy of the area, gained from field and laboratory studies ranging from reconnaissance to detailed; all published information has been considered, and much of it utilized, but it is not practicable to include a complete bibliography. References are given to papers presenting views differing from those of the author, and to recent papers not yet listed in bibliographies. A complete bibliography of Texas geology through 1932 is given by Sellards (1933, p. 819-965). Watson H. Monroe has collaborated in the preparation of that part of the chart showing therelations of the Upper Cretaceous units in Alabama and Mississippi. The classification shown in the Upper Cretaceous part of the Delaware column is based on a recently published paper by Charles W. Carter (1937, p. 237-281). Philip B. King is responsible for the remainder of the chart covering the Lower Cretaceous (Comanche series) of central Texas (largely compiled from published sources) and all of the Cretaceous in trans-Pecos Texas (from personal knowledge and published sources). In March 1941 this part of the chart was checked by R. W. Imlay, and changes were made by King at his suggestion. References to the more important literature are given. In a correlation chart of this kind, in which age equivalencies are expressed by horizontal lining, it is obviously impossible to indicate relative thicknesses by vertical spacing. Hiatuses are indicated by vertical lining. The red-line overprint is intended to indicate certain important lithologic and faunal boundaries, and to assist the eye in recognizing the age relationships of the geologic units

Geological Society of America Bulletin↗
USGS2024

Evaluation of the lakes and impoundments drought index for the Massachusetts Drought Management Plan

The condition of surface water storage in lakes and impoundments is used as an index of drought in the Massachusetts drought management plan. The U.S. Geological Survey visited 28 of these lakes and impoundments at 14 single and multiple waterbody systems to evaluate their appropriateness for characterizing drought. The data collection and computation methods at each system were then reviewed and checked for consistency. The types of historical monthly data available varied by system and included water surface elevation, depth of water below the spillway, volume, or reservoir capacity (percent full). For this analysis, water surface elevations and reservoir capacities were converted to volumes to assess the interannual variability in lake volumes. As a second level of assessment, analysis was also done on water surface elevation variability. Systems that did not have enough differentiation in monthly values between lake volume or water surface elevations to clearly demarcate drought levels were identified as unsuitable for use in the drought index for that month. This report discusses the limitations of using the reviewed lakes and impoundments as a drought index, as well as a list of best practices for data collection techniques to improve the confidence and reliability of the data collected.

Massachusetts↗
USGS2000

High Plains Regional Ground-water Study web site

Now available on the Internet is a web site for the U.S. Geological Survey's (USGS) National Water-Quality Assessment (NAWQA) Program-High Plains Regional Ground-Water Study. The purpose of the web site is to provide public access to a wide variety of information on the USGS investigation of the ground-water resources within the High Plains aquifer system. Typical pages on the web site include the following: descriptions of the High Plains NAWQA, the National NAWQA Program, the study-area setting, current and past activities, significant findings, chemical and ancillary data (which can be downloaded), listing and access to publications, links to other sites about the High Plains area, and links to other web sites studying High Plains ground-water resources. The High Plains aquifer is a regional aquifer system that underlies 174,000 square miles in parts of eight States (Colorado, Kansas, Nebraska, New Mexico, Oklahoma, South Dakota, Texas, and Wyoming). Because the study area is so large, the Internet is an ideal way to provide project data and information on a near real-time basis. The web site will be a collection of living documents where project data and information are updated as it becomes available throughout the life of the project. If you have an interest in the High Plains area, you can check this site periodically to learn how the High Plains NAWQA activities are progressing over time and access new data and publications as they become available.

Fact Sheet↗
USGS2008

Fischer-assays of oil-shale drill cores and rotary cuttings from the greater Green River basin, southwestern Wyoming

Chapter 1 of this CD–ROM is a database of digitized Fischer (shale-oil) assays of cores and cuttings from boreholes drilled in the Eocene Green River oil shale deposits in southwestern Wyoming. Assays of samples from some surface sections are also included. Most of the Fischer assay analyses were made by the former U.S. Bureau of Mines (USBM) at its laboratory in Laramie, Wyoming. Other assays, made by institutional or private laboratories, were donated to the U.S. Geological Survey (USGS) and are included in this database as well as Adobe PDF-scanned images of some of the original laboratory assay reports and lithologic logs prepared by USBM geologists. The size of this database is 75.2 megabytes and includes information on 971 core holes and rotary-drilled boreholes and numerous surface sections. Most of these data were released previously by the USBM and the USGS through the National Technical Information Service but are no longer available from that agency. Fischer assays for boreholes in northeastern Utah and northwestern Colorado have been published by the USGS. Additional data include geophysical logs, groundwater data, chemical and X-ray diffraction analyses, and other data. These materials are available for inspection in the office of the USGS Central Energy Resources Team in Lakewood, Colorado. The digitized assays were checked with the original laboratory reports, but some errors likely remain. Other information, such as locations and elevations of core holes and oil and gas tests, were not thoroughly checked. However, owing to the current interest in oil-shale development, it was considered in the public interest to make this preliminary database available at this time. Chapter 2 of this CD–ROM presents oil-yield histograms of samples of cores and cuttings from exploration drill holes in the Eocene Green River Formation in the Great Divide, Green River, and Washakie Basins of southwestern Wyoming. A database was compiled that includes about 47,000 Fischer assays from 186 core holes and 240 rotary drill holes. Most of the oil yield data are from analyses performed by the former U.S. Bureau of Mines oil shale laboratory in Laramie, Wyoming, with some analyses made by private laboratories. Location data for 971 Wyoming oil-shale drill holes are listed in a spreadsheet that is included in the CD–ROM. These Wyoming Fischer assays and histograms are part of a much larger collection of oil-shale information, including geophysical and lithologic logs, water data, chemical and X-ray diffraction analyses on the Green River oil-shale deposits in Colorado, Utah, and Wyoming held by the U.S. Geological Survey. Because of an increased interest in oil shale, this CD–ROM containing Fischer assay data and oil-yield histograms for the Green River oil-shale deposits in southwestern Wyoming is being released to the public. Microsoft Excel spreadsheets included with Chapter 2 contain the Fischer assay data from the 426 holes and data on the company name and drill-hole name, and location. Histograms of the oil yields obtained from the Fischer assays are presented in both Grapher and PDF format. Fischer assay text data files are also included in the CD–ROM.

Wyoming↗
USGS1994

1:250,000-scale Hydrologic Units of the United States

The Geographic Information Retrieval and Analysis System (GIRAS) was developed in the mid 70s to put into digital form a numberof data layers which were of interest to the USGS. One of these data layers was the Hydrologic Units. The map is based on the Hydrologic Unit Maps published by the U.S. Geological Survey Office of Water Data Coordination, together with the list descriptions and name of region, subregion, accounting units, and cataloging unit. The hydrologic units are encoded with an eight-digit number that indicates the hydrologic region (first two digits), hydrologic subregion (second two digits), accounting unit (third two digits), and cataloging unit (fourth two digits). The data produced by GIRAS was originally collected at a scale of 1:250K. Some areas, notably major cities in the west, were recompiled at a scale of 1:100K. In order to join the data together and use the data in a geographic information system (GIS) the data were processed in the ARC/INFO GUS software package. Within the GIS, the data were edgematched and the neatline boundaries between maps were removed to create a single data set for the conterminous United States. NOTE: A version of this data theme that is more throughly checked (though based on smaller-scale maps) is available here: http://water.usgs.gov/lookup/getspatial?huc2m

Open-File Report↗
USGS2011

Coulomb 3.3 Graphic-rich deformation and stress-change software for earthquake, tectonic, and volcano research and teaching-user guide

Coulomb is intended both for publication-directed research and for college and graduate school classroom instruction. We believe that one learns best when one can see the most and can explore alternatives quickly. So the principal feature of Coulomb is ease of input, rapid interactive modification, and intuitive visualization of the results. The program has menus and check-items, and dialogue boxes to ease operation. The internal graphics are suitable for publication, and can be easily imported into Illustrator, GMT, Google Earth, or Flash for further enhancements. Coulomb is designed to let one calculate static displacements, strains, and stresses at any depth caused by fault slip, magmatic intrusion, or dike expansion/contraction. One can calculate static displacements (on a surface or at GPS stations), strains, and stresses caused by fault slip, magmatic intrusion, or dike expansion. Problems, such as how an earthquake promotes or inhibits failure on nearby faults, or how fault slip or dike expansion will compress a nearby magma chamber, are germane to Coulomb. Geologic deformation associated with strike-slip faults, normal faults, or fault-bend folds is also a useful application. Calculations are made in an elastic halfspace with uniform isotropic elastic properties following Okada (1992)-see list of key papers in section 1.9. There is substantial evidence to support the hypothesis that faults interact by the transfer of stress, both on the time scales of earthquake sequences and aftershocks and on longer time scales associated with the interevent time of the largest shocks that occur in a given region. There is also evidence that faults and magmatic systems interact as well, and that static stress changes influence intrusions and eruptions. Processes not included in Coulomb are also important, such as dynamic stresses, pore-fluid diffusion, and viscoelastic rebound. Further, elastic stiffness differences between basins and crustal layering modify the stresses in comparison to the elastic halfspace implemented in Coulomb. Nevertheless, we believe that a simple tool that permits exploration of a key component of earthquake interaction has great value for understanding and discovery. To download the software (a MATLAB application) and tutorial files, please go to http://www.coulombstress.org

Open-File Report↗
USGS2010

Viral hemorrhagic septicemia virus (VHSV IVb) risk factors and association measures derived by expert panel

Viral hemorrhagic septicemia virus (VHSV) is an OIE-listed pathogen of fish, recently expanding in known host and geographic range in North America. Through a group process designed for subjective probability assessment, an international panel of fish health experts identified and weighted risk factors perceived important to the emergence and spread of the viral genotype, VHSV IVb, within and from the Great Lakes region of the US and Canada. Identified factors included the presence of known VHSV-susceptible species, water temperatures conducive for disease, hydrologic connectivity and proximity to known VHSV-positive areas, untested shipments of live or frozen fish from known positive regions, insufficient regulatory infrastructure for fish health oversight, and uncontrolled exposure to fomites associated with boat and equipment or fish wastes from known VHSV-positive areas. Results provide qualitative insights for use in VHSV surveillance and risk-management planning, and quantitative estimates of contextual risk for use in a Bayesian model combining multiple evidence streams for joint probability assessment of disease freedom status. Consistency checks suggest that the compiled factors positively reflect expert judgment of watershed risk for acquiring VHSV IVb. External validation is recommended as the availability of empirical data permits.

Preventive Veterinary Medicine↗
USGS2009

Pre-Restoration Habitat Use by Chinook Salmon in the Nisqually Estuary Using Otolith Analysis: An Additional Year

The Nisqually Fall Chinook population is one of 27 stocks in the Puget Sound evolutionarily significant unit listed as threatened under the Federal Endangered Species Act (ESA). Preservation and extensive restoration of the Nisqually delta ecosystem is currently taking place to assist in recovery of the stock as juvenile Fall Chinook salmon are dependent upon the estuary. A pre-restoration baseline that includes characterization of life history types, estuary residence times, growth rates, and habitat use is needed to evaluate the potential response of hatchery and natural origin Chinook salmon to restoration efforts and determine restoration success. Otolith analysis was selected to examine Chinook salmon life history, growth, and residence in the Nisqually Estuary. Previously funded work on wild samples collected in 2004 established the growth rate and length of residence associated with various habitats. The purpose of the current study is to build on the previous work by incorporating otolith microstructure analysis from 2005 (second sampling year), to verify findings from 2004, and to evaluate between-year variation in otolith microstructure. Our results from this second year of analysis indicated no inter-annual variation in the appearance of the tidal delta check (TDCK) and delta-flats check (DFCK). However, a new life history type (fry migrant) was observed on samples collected in 2005. Fish caught in the tidal delta regardless of capture date spent an average of 17 days in the tidal delta. There was a corresponding increase in growth rate as the fish migrated from freshwater (FW) to tidal delta to nearshore (NS) habitats. Fish grew 33 percent faster in the tidal delta than in FW habitat and slightly faster (14 percent) in the delta flats (DF) habitat compared to the tidal delta.

Open-File Report↗
USGS2022

Comparison of methods for estimating density and population trends for low-density Asian bears

Populations of bears in Asia are vulnerable to extinction and effective monitoring is critical to measure and direct conservation efforts. Population abundance (local density) or growth (λ ) are the most sensitive metrics to change. We discuss the value in implementing spatially explicit capture-recapture (SCR), the current gold standard for density estimation, and open population SCR (OPSCR) to monitor changes in density over time. We provide guidance for designing studies to provide estimates with sufficient power to detect changes. Because of the wide availability of camera traps and interest in their use, we consider six density estimation methods and their extensions developed for use with camera traps, with specific consideration of assumptions and applications for monitoring Asian bears. We conducted a power analysis to calculate the precision in estimates needed to detect changes in populations with reference to IUCN Red List criteria. We performed a systematic review of empirical studies implementing camera trap abundance estimation methods and considered sample sizes, effort, and model assumptions required to achieve adequate precision for population monitoring. We found SCR and OPSCR, reliant on “marked” individuals, are currently the only methods with enough power to reliably detect even moderate to major (20–80%) declines. Camera trap methods with unmarked individuals rarely achieved precision sufficient to detect even large declines (80–90%), although with some exceptions (e.g., situations with moderate population densities, large number of sampling sites, or inclusion of ancillary local telemetry data. We describe additional estimation options including line transects, direct observations, monitoring age-specific survival and reproductive rates, and hybrid/integrated methodologies that may have potential to work for some Asian bear populations. We conclude monitoring changes in abundance or density is possible for most Asian bear populations but will require collaboration among researchers over broad spatial extents and extensive financial investment to overcome biological and logistical constraints. We strongly encourage practitioners to consider study design and sampling effort required to meet objectives by conducting simulations, power analyses, and assumption checks prior to implementing monitoring efforts, and reporting standardized dispersion measures such as coefficients of variation to allow for assessment of precision. Our guidance is relevant to other low-density and wide-ranging species.

Global Ecology and Conservation↗
USGS2010

Otolith analysis of pre-restoration habitat use by Chinook salmon in the delta-flats and nearshore regions of the Nisqually River Estuary

The Nisqually Fall Chinook population is one of 27 salmon stocks in the Puget Sound (Washington) evolutionarily significant unit listed as threatened under the federal Endangered Species Act (ESA). Extensive restoration of the Nisqually River delta ecosystem is currently taking place to assist in recovery of the stock as juvenile Fall Chinook salmon are dependent on the estuary. A pre-restoration baseline that includes the characterization of life history strategies, estuary residence times, growth rates, and habitat use is needed to evaluate the potential response of hatchery and natural origin Chinook salmon to restoration efforts and to determine restoration success. Otolith analysis was selected as a tool to examine Chinook salmon life history, growth, and residence in the Nisqually River estuary. Previously funded work on samples collected in 2004 (marked and unmarked) and 2005 (unmarked only) partially established a juvenile baseline on growth rates and length of residence associated with various habitats (freshwater, forested riverine tidal, emergent forested transition, estuarine emergent marsh, delta-flats and nearshore). However, residence times and growth rates for the delta-flats (DF) and nearshore (NS) habitats have been minimally documented due to small sample sizes. The purpose of the current study is to incorporate otolith microstructural analysis using otoliths from fish collected within the DF and NS habitats during sampling years 2004-08 to increase sample size and further evaluate between-year variation in otolith microstructure. Our results from this analysis indicated the delta-flats check (DFCK) on unmarked and marked Chinook samples in 2005-08 varied slightly in appearance from that seen on samples previously analyzed only from 2004. A fry migrant life history was observed on otoliths of unmarked Chinook collected in 2005, 2007, and 2008. Generally, freshwater mean increment width of unmarked fish, on average, was smaller compared to marked Chinook followed by tidal delta and DF/NS portions respectively. On average, the complete tidal delta growth rate was higher for marked Chinook compared to unmarked Chinook. The DF/NS growth rate was highest for unmarked and marked Chinook during 2008 compared to all other sampling years. The average DF/NS growth rate on unmarked Chinook was consistently lower than marked Chinook during all years; however, sample sizes were small during some years. Unmarked Chinook, on average, spent longer in the tidal delta compared to marked Chinook. Our results from this report suggest that otolith microstructural analysis can be a valuable tool in establishing baseline information on the utilization of Nisqually River estuary habitats by juvenile Chinook salmon prior to the newly funded restoration efforts.

Open-File Report↗
USGS1987

Improving atlas methodology

We are studying a sample of Maryland (2 %) and New Hampshire (4 %) Atlas blocks and a small sample in Maine. These three States used different sampling methods and block sizes. We compare sampling techniques, roadside with off-road coverage, our coverage with that of the volunteers, and different methods of quantifying Atlas results. The 7 1/2' (12-km) blocks used in the Maine Atlas are satisfactory for coarse mapping, but are too large to enable changes to be detected in the future. Most states are subdividing the standard 7 1/2' maps into six 5-km blocks. The random 1/6 sample of 5-km blocks used in New Hampshire, Vermont (published 1985), and many other states has the advantage of permitting detection of some changes in the future, but the disadvantage of leaving important habitats unsampled. The Maryland system of atlasing all 1,200 5-km blocks and covering one out of each six by quarterblocks (2 1/2-km) is far superior if enough observers can be found. A good compromise, not yet attempted, would be to Atlas a 1/6 random sample of 5-km blocks and also one other carefully selected (non-random) block on the same 7 1/2' map--the block that would include the best sample of habitats or elevations not in the random block. In our sample the second block raised the percentage of birds found from 86% of the birds recorded in the 7 1/2' quadrangle to 93%. It was helpful to list the expected species in each block and to revise this list annually. We estimate that 90-100 species could be found with intensive effort in most Maryland blocks; perhaps 95-105 in New Hampshire. It was also helpful to know which species were under-sampled so we could make a special effort to search for these. A total of 75 species per block (or 75% of the expected species in blocks with very restricted habitat diversity) is considered a practical and adequate goal in these States. When fewer than 60 species are found per block, a high proportion of the rarer species are missed, as well as some of the common ones. Similarity indices based on fewer than 60 species per block reflect coverage rather than habitat affinities. Atlas blocks that are ecologically similar should have similarity indices (S) of at least 0.80 to be considered adequately covered. S = 2C/(A + B), where C is the number of species in common and A and B are species totals for each of the two blocks being compared. A series of 15 13-minutes roadside stops yielded more species than 15 off-road stops, but off-road stops always had some species not detected at the roadside stops. A series of timed stops is an excellent way to map relative abundance if the stops are standardized with respect to time of day and weather, and the counts are made by observers of comparable ability. Efforts to estimate Atlas block populations in powers of 10 (as in the French Atlas) have not gained acceptance in U.S.A. Most observers feel unqualified to make estimates. An efficient way to Atlas a block is to make at least 3 early morning visits to 15 or more specific stops. Arrive in the block early enough to check for nocturnal species on at least two days; and after completing the specific stops, search the block for other species and for confirmations.

Acta Oecologica Oecologia Generalis↗
USGS2017

Building a state-space life cycle model for naturally produced Snake River fall Chinook salmon

In 1992, Snake River basin fall Chinook salmon (Oncorhynchus tshawytscha) were listed for protection under the U.S. Endangered Species Act (NMFS 1992) and the population remained below 1000 individuals until 2000. Since then, returns from natural production has rebounded to over 20,000 spawners owing to a host of factors including reduced harvest (Peters et al. 2001), stable minimum spawning flows (Groves and Chandler 1999), summer flow augmentation (Connor et al. 2003), predator control (Beamesderfer et al. 1996), hatchery supplementation (Rosenberger et al. 2017), improved juvenile passage structures (Adams et al. 2014), summer spill operations (Perry et al. 2006; Adams et al. 2008), and periods of favorable ocean conditions and food availability (Logerwell et al. 2003; Peterson et al. 2014). Given this change in abundance coincident with numerous management actions and fluctuation in environmental drivers, quantifying which factors contributed to the observed rebound in natural production can provide critical insights into future management actions for this at-risk population. Multistage life cycle models provide a powerful analytical framework for understating how each life stage of a population contributes to population growth rate (Moussalli and Hilborn 1986; Greene and Beechie 2004). Multistage models may also be used as an analytical framework to explicitly estimate demographic parameters of a population model. This approach has an advantage over single-stage stock-recruitment models by allowing population growth rates to be partitioned among life stages rather than aggregated over an entire life cycle. Such partitioning allows for estimating 1) stage-specific density dependence, and 2) stage-specific effects of environmental factors or management actions. For example, Zabel et al. (2006) estimated parameters of a multistage model used in the context of a population viability analysis for spring/summer Chinook salmon in the Snake River, but such an approach has yet to be applied to fall Chinook salmon in the Snake River basin. Typically, data informing estimates of abundance at particular “check points” in the life cycle determines the complexity of the multistage model that can be fit to the data. For fall Chinook salmon, we are developing a two-stage model that encompasses: 1) upstream passage of spawners at Lower Granite Dam (LGR) to the subsequent downstream passage of their progeny at the dam, and 2) downstream passage of juveniles at LGR to their subsequent return from the ocean and passage at the Dam 2‒6 years later. This approach partitions the life cycle of fall Chinook salmon both spatially and temporally, which allows us to fit and compare alternative models with covariates specific to each stage. Our previous report to the ISAB (Zabel et al. 2013) detailed methods for estimating abundance of naturally produced adults and juveniles passing Lower Granite Dam, which provides the requisite data for fitting a two-stage model. The intent of this report is to describe the structure of the two-stage life cycle model, present preliminary results from fitting the model to data, and outline future directions and developments. As is clear from the diversity of models presented in this report, “life cycle models” range from very simple theoretically based population models (e.g., the Beverton-Holt stock- recruitment model) to very complex spatially explicit simulation models linked to hydrosystem hydrodynamic models (e.g., the COMPASS model for a single transition in a life cycle model, Zabel et al. 2008). We chose to develop a model of intermediate complexity that casts the two- stage life cycle model in a state-space framework (Newman et al. 2014). We chose to use a state-space framework implemented in a Bayesian framework because: • It provides both a statistical estimation framework for retrospective statistical analysis and a stochastic simulation framework for prospective analysis to evaluate alternative management actions. • Abundance estimates are uncertain. A state-space framework accounts for observation uncertainty in the abundance estimates and other data (e.g., age structure) while simultaneously estimating process uncertainty. • It allows for missing data. By drawing missing data from an appropriate probability model, uncertainty owing to missing data can be propagated without having to omit data or assume fixed values for missing data. Thus, a two-stage state-space life cycle model for fall Chinook salmon strikes an appropriate balance between model complexity, tractability, and applicability given the goals of performing both retrospective and prospective analysis to guide future management of this population.

Idaho, Oregon, Washington, Wyoming↗
USGS1986

Shallow ground-water conditions, Tom Green County, Texas

Most of the water needs of Tom Green County, Texas, are supplied by ground water; however, the city of San Angelo is supplied by surface water. Groundwater withdrawals during 1980 (latest year for which data are available) in Tom Green County totaled about 15,300 acre-feet, all derived from shallow aquifers. Shallow aquifers in this report refer to the ground-water system generally less than 400 feet deep that contains water with less than a 10,000 milligrams per liter concentration of dissolved solids; aquifers comprising this system include: The Leona, Comanche Peak, Trinity, Blaine, San Angelo, Choza, Bullwagon, Vale, Standpipe, and Arroyo aquifers. The current (1983) water levels in shallow aquifers in Tom Green County are relatively unchanged from those levels listed in previous reports. In most wells, the change in water level is less than 10 feet, and only a few isolated wells or areas have changes of more than 20 feet. Based on long-term hydrographs of selected wells and precipitation, water levels are directly related to precipitation and associated pumpage for irrigation. Current (1983) water levels probably are higher than normal due to the above-normal precipitation during 1980-81. Ground water in Tom Green County commonly is very hard (greater than 180 milligrams per liter as calcium carbonate), and chemical types vary in the aquifers and in different parts of the county. The concentrations of dissolved solids range from 200 to 3,000 milligrams per liter, the dissolved-chloride concentrations range from about 40 to 1,000 milligrams per liter, and the dissolved-sulfate concentrations normally range from about 25 to 600 milligrams per liter. The dissolved-nitrate concentrations in samples from eight wells ranged from 2 to 37 milligrams per liter. Five of these samples exceeded the maximum contaminant level of 10 milligrams per liter set by the U.S. Environmental Protection Agency. Of the eight water samples analyzed for minor elements, two exceeded the maximum contaminant level for selenium, and one exceeded the maximum contaminant level for manganese. Samples from three wells were analyzed for selected pesticides; no pesticides were detected. Two groups of ground-water samples were tested for bacteria in April and August 1983. The first group consisted of samples from 25 wells; no samples contained fecal-coliform bacteria, but 15 samples contained fecal-streptococci bacteria. The second group consisted of samples from 29 wells and 1 spring; twelve of these samples contained fecal-coliform bacteria and all 30 contained fecal-streptococci bacteria. Water samples from seven wells were common to both groups, and the samples tested in August contained more bacteria. Counts of fecal-coliform bacteria ranged from 0 to 26 colonies per 100 milliliters with most less than 5 colonies per 100 milliliters. Counts of fecal-streptococci bacteria ranged from 0 to 400 colonies per 100 milliliters with most less than 20 colonies per 100 milliliters. The presence of fecal-coliform and fecalstreptococci bacteria in water is only an indicator that pollution from septic systems may be present and is not a positive check for fecal pollution. Generally, the aquifers are not contaminated by septic-system effluent, however, some individual wells or localized areas could be contaminated by nearby septic systems. Using dissolved-solids concentrations as an indicator, historical and current (1983) water-quality records were compared to determine if any changes in water quality had occurred. The quality of water from Cretaceous rocks underlying the Edwards Pleateau has not changed significantly; this water is the least mineralized ground water in the county. The quality of water from the Arroyo and Bullwagon aquifers in the eastern most part of the county also has not changed significantly; dissolved-solids concentrations range from 1,500 to 2,000 milligrams per liter. In the remainder of the county, dissolved-solids concentrations have increased from 10 to 500 milligrams per liter in ground water along the river valleys and in the Li pan Flat area and increases of 500 to 1,100 milligrams per liter have occurred in ground water southeast of San Angelo, west of Twin Buttes Reservoir, and about 10 miles east of San Angelo. Locally, dissolved-solids concentrations have increased by as much as 4,530 milligrams per liter in water from individual wells. Pollution from oil-field activities may affect the quality of water in some isolated wells and in some areas in the county. No historical records are available for determining any changes in pesticides, minor elements, or bacteria.

Texas↗