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USGS2009

Patterns and scales of phytoplankton variability in estuarine: Coastal ecosystems

Phytoplankton variability is a primary driver of chemical and biological dynamics in the coastal zone because it directly affects water quality, biogeochemical cycling of reactive elements, and food supply to consumer organisms. Much has been learned about patterns of phytoplankton variability within individual ecosystems, but patterns have not been compared across the diversity of ecosystem types where marine waters are influenced by connectivity to land. We extracted patterns from chlorophyll- a series measured at 84 estuarine–coastal sites, using a model that decomposes time series into an annual effect, mean seasonal pattern, and residual “events.” Comparisons across sites revealed a large range of variability patterns, with some dominated by a recurrent seasonal pattern, others dominated by annual (i.e., year-to-year) variability as trends or regime shifts and others dominated by the residual component, which includes exceptional bloom events such as red tides. Why is the partitioning of phytoplankton variability at these three scales so diverse? We propose a hypothesis to guide next steps of comparative analysis: large year-to-year variability is a response to disturbance from human activities or shifts in the climate system; strong seasonal patterns develop where the governing processes are linked to the annual climate cycle; and large event-scale variability occurs at sites highly enriched with nutrients. Patterns of phytoplankton variability are therefore shaped by the site-specific relative importance of disturbance, annual climatology, and nutrient enrichment.

Estuaries and Coasts↗

USGS2025

Integrated patterns of residence and movement create testable hypotheses about fish feeding migrations

Developing and testing alternate hypotheses about patterns, mechanisms, and consequences of movement in geographically-large, heterogeneous, natural systems can advance the scientific understanding of animal migration and benefit the conservation of most mobile species. Within organismal movement trajectories, different combinations of residence and movement are predicted from existing ecological theories (e.g. long distance migration, site fidelity, central place foraging, ideal free distribution, habitat shifts). However, testing these conceptually-based, spatially-explicit hypotheses about animal movement and migration in the field can be logistically challenging. Here our purpose is to introduce Resmo , a framework of metrics and analyses that integrate site-specific RESidence and across-site MOvements. We illustrate the ecological insights from this framework using the empirical example of coastal Striped Bass ( Morone saxatilis ) during their seasonal feeding migration. Our use of site-specific Resmo applied to empirical telemetry data enhanced the understanding of feeding behavior of migratory fish, suggested testable ecologically-meaningful hypotheses about foraging, and identified criteria on which to base the selection of future sampling locations. In summary, the Resmo approach provides a useful new direction for thinking about animal migration, animal movement, biological conservation, and future priorities for empirical field data collection related to understanding the distribution of mobile organisms.

Scientific Reports↗

USGS2008

[Obituary] In memoriam: Mortimer Brooke Meanley, Jr., 1915-2007

Mortimer Brooke Meanley, Jr., was born at Riderwood, Baltimore County, Maryland, on 19 January 1915, and died at home in Maine on 19 August 2007. He was always called “Brooke” as an adult. Much of his youth was spent in birding and other natural-history activities, interest he credits to the Boy Scouts and his teachers. These activities directed him toward a professional career in wildlife biology. He was educated at McDonogh High School in Owings Mill, Maryland – at the time a private, semimilitary school for boys – and graduated in 1934.

The Auk↗

USGS1971

Sea lampreys in the Great Lakes of North America

The movement of sea lampreys into the upper Great Lakes (Superior, Michigan, and Huron) initiated a series of biological changes which have extended beyond the fish directly attacked by the parasite. The threat posed by the sea lamprey was not generally recognized until it was well established in all the lakes and had seriously affected the fisheries in Lakes Huron and Michigan. As the sea lamprey increased primarily at the expense of the valuable lake trout stocks and to a lesser degree other fish species, the need for research and concerted action became clear to the commercial fishery industry and fishery investigators of the United States and Canada.

Book chapter↗

USGS2016

Human land-use and soil change

Soil change refers to the alteration of soil and soil properties over time in one location, as opposed to soil variability across space. Although soils change with pedogensis, this chapter focuses on human caused soil change. Soil change can occur with human use and management over long or short time periods and small or large scales. While change can be negative or positive; often soil change is observed when short-term or narrow goals overshadow the other soil’s ecosystem services. Many soils have been changed in their chemical, physical or biological properties through agricultural activities, including cultivation, tillage, weeding, terracing, subsoiling, deep plowing, manure and fertilizer addition, liming, draining, and irrigation. Assessing soil change depends upon the ecosystem services and soil functions being evaluated. The interaction of soil properties with the type and intensity of management and disturbance determines the changes that will be observed. Tillage of cropland disrupts aggregates and decreases soil organic carbon content which can lead to decreased infiltration, increased erosion, and reduced biological function. Improved agricultural management systems can increase soil functions including crop productivity and sustainability. Forest management is most intensive during harvesting and seedling establishment. Most active management in forests causes disturbance of the soil surface which may include loss of forest floor organic materials, increases in bulk density, and increased risk of erosion. In grazing lands, pasture management often includes periods of biological, chemical and physical disturbance in addition to the grazing management imposed on rangelands. Grazing animals have both direct and indirect impacts on soil change. Hoof action can lead to the disturbance of biological crusts and other surface features impairing the soil’s physical, biological and hydrological function. There are clear feedbacks between vegetative systems and soil properties; when vegetation is altered because of grazing or other disturbances, soil property changes often follow. Some soils are very sensitive to management and disturbance and can undergo rapid change: cropping led to massive gully formation in the southeastern USA, exposure of acid-sulfate soils led to irreversible changes in soil minerology and thawing of cold soils has created thermokarst features. These soil changes alter soil properties and functions and may impact soil ecosystem services far into the future.

World Soils Book Series↗

USGS2009

Alligators and crocodiles as indicators for restoration of Everglades ecosystems

Alligators and crocodiles integrate biological impacts of hydrological operations, affecting them at all life stages through three key aspects of Everglades ecology: (1) food webs, (2) diversity and productivity, and (3) freshwater flow. Responses of crocodilians are directly related to suitability of environmental conditions and hydrologic change. Correlations between biological responses and environmental conditions contribute to an understanding of species' status and trends over time. Positive or negative trends of crocodilian populations relative to hydrologic changes permit assessment of positive or negative trends in restoration. The crocodilian indicator uses monitoring parameters (performance measures) that have been shown to be both effective and efficient in tracking trends. The alligator component uses relative density (reported as an encounter rate), body condition, and occupancy rates of alligator holes; the crocodile component uses juvenile growth and hatchling survival. We hypothesize that these parameters are correlated with hydrologic conditions including depth, duration, timing, spatial extent and water quality. Salinity is a critical parameter in estuarine habitats. Assessments of parameters defined for crocodilian performance measures support these hypotheses. Alligators and crocodiles are the charismatic megafauna of the Everglades. They are both keystone and flagship species to which the public can relate. In addition, the parameters used to track trends are easy to understand. They provide answers to the following questions: How has the number of alligators or crocodiles changed? Are the animals fatter or thinner than they should be? Are the animals in the places (in terms of habitat and geography) where they should be? As surely as there is no other Everglades, no other single species defines the Everglades as does the American alligator. The Everglades is the only place in the world where both alligators and crocodiles exist. Crocodilians clearly respond to changes in hydrologic parameters of management interest. These relationships are easy to communicate and mean something to managers, decision makers, and the public. Having crocodilians on the list of system-wide, general indicators provides us with one of the most powerful tools we have to communicate progress of ecosystem restoration in Greater Everglades ecosystems to diverse audiences.

Florida↗

USGS2021

Literature review for candidate chemical control agents for nonnative crayfish

Nonnative crayfish are an immediate and pervasive threat to aquatic environments and their biodiversity. Crayfish control can be achieved by physical methods, water chemistry modification, biological methods, biocidal application, and application of crayfish physiology modifiers. The purpose of this report is to identify suitable candidates for potential control of nonnative crayfish through a comprehensive literature review. This review focuses on control methods, specifically on the available data to support registration of a crayfish pesticide. The literature search resulted in 28,058 documents, which were searched to determine if they contained information on physical, chemical, biological, and (or) biocidal approaches to control crayfish. Pesticides directly toxic to crayfish in this literature review include: pyrethroids (natural pyrethrins and synthetic), fipronil, mirex, antimycin-A, and rotenone. Some chemicals, such as diflubenzuron and emamectin benzoate, alter crayfish physiology resulting in a lower pesticide dose needed to control crayfish. Environmental damage, application rate, exposure duration, nontarget effects, environmental persistence, and registration data gaps were used as criteria to define which pesticides are potentially selective to crayfish, along with which have the greatest amount of data to support registration by the U.S. Environmental Protection Agency. Synthetic pyrethroids were identified as the most likely candidate to be developed into a crayfish pesticide. A type-2 synthetic pyrethroid, cyfluthrin, has the greatest potential for eradicating nonnative crayfish. Although other invertebrate species will be negatively affected at the concentrations required for crayfish control, compared with other pyrethroids and other potential control chemicals, cyfluthrin offers rapid ecosystem recovery due to being more selective, having fewer effects on native fish, and having a short aquatic persistence. Cyfluthrin also has few data gaps for U.S. Environmental Protection Agency registration purposes.

Open-File Report↗

USGS2006

Forecasting selenium discharges to the San Francisco Bay-Delta Estuary: Ecological effects of a proposed San Luis Drain extension

Selenium discharges to the San Francisco Bay-Delta Estuary (Bay-Delta) could change significantly if federal and state agencies (1) approve an extension of the San Luis Drain to convey agricultural drainage from the western San Joaquin Valley to the North Bay (Suisun Bay, Carquinez Strait, and San Pablo Bay); (2) allow changes in flow patterns of the lower San Joaquin River and Bay-Delta while using an existing portion of the San Luis Drain to convey agricultural drainage to a tributary of the San Joaquin River; or (3) revise selenium criteria for the protection of aquatic life or issue criteria for the protection of wildlife. Understanding the biotransfer of selenium is essential to evaluating effects of selenium on Bay-Delta ecosystems. Confusion about selenium threats to fish and wildlife stem from (1) monitoring programs that do not address specific protocols necessary for an element that bioaccumulates; and (2) failure to consider the full complexity of the processes that result in selenium toxicity. Past studies show that predators are more at risk from selenium contamination than their prey, making it difficult to use traditional methods to predict risk from environmental concentrations alone. This report presents an approach to conceptualize and model the fate and effects of selenium under various load scenarios from the San Joaquin Valley. For each potential load, progressive forecasts show resulting (1) water-column concentration; (2) speciation; (3) transformation to particulate form; (4) particulate concentration; (5) bioaccumulation by invertebrates; (6) trophic transfer to predators; and (7) effects on those predators. Enough is known to establish a first-order understanding of relevant conditions, biological response, and ecological risks should selenium be discharged directly into the North Bay through a conveyance such as a proposed extension of the San Luis Drain. The approach presented here, the Bay-Delta selenium model, determines the mass, fate, and effects of selenium released to the Bay-Delta through use of (1) historical land-use, drainage, alluvial-fill, and runoff databases; (2) existing knowledge concerning biogeochemical reactions and physiological parameters of selenium (e.g., speciation, partitioning between dissolved and particulate forms, and bivalve assimilation efficiency); and (3) site-specific data mainly from 1986 to 1996 for clams and bottom-feeding fish and birds. Selenium load scenarios consider effluents from North Bay oil refineries and discharges of agricultural drainage from the San Joaquin Valley to enable calculation of (a) a composite freshwater endmember selenium concentration at the head of the estuary; and (b) a selenium concentration at a selected seawater location (Carquinez Strait) as a foundation for modeling. Analysis of selenium effects also takes into account the mode of conveyance for agricultural drainage (i.e., the San Luis Drain or San Joaquin River); and flows of the Sacramento River and San Joaquin River on a seasonal or monthly basis. Load scenarios for San Joaquin Valley mirror predictions made since 1955 of a worsening salt (and by inference, selenium) build-up exacerbated by an arid climate and massive irrigation. The reservoir of selenium in the San Joaquin Valley is sufficient to provide loading at an annual rate of approximately 42,500 pounds of selenium to a Bay-Delta disposal point for 63 to 304 years at the lower range of projections presented here, even if influx of selenium from the California Coast Ranges could be curtailed. Disposal of wastewaters on an annual basis outside of the San Joaquin Valley may slow the degradation of valley resources, but drainage alone cannot alleviate the salt and selenium build-up in the San Joaquin Valley, at least within a century. Load scenarios also show the different proportions of selenium loading to the Bay-Delta. Oil refinery loads from 1986 to 1992 ranged from 8.5 to 20 pounds of selenium per day; with treatment and cleanup, loads decreased to 3.0 pounds of selenium per day in 1999. In contrast, San Joaquin Valley agricultural drainage loads disposed of in a San Luis Drain extension could range from 45 to 117 pounds of selenium per day across a set of historical and future conditions. Components of this valley-wide load include five source subareas (i.e., Grassland, Westlands, Tulare, Kern, and Northern) defined by water and drainage management. Loads vary per subarea mainly because of proximity of the subarea to geologic sources of selenium and irrigation history. Loads from the Sacramento River, depending on flow conditions, range from 0.8 to 10 pounds of selenium per day. Loads from the San Joaquin River vary depending on restoration and flow conditions, which are considered. A consistent picture of ecological risk emerges under modeled selenium discharges from a proposed San Luis Drain extension. The threat to the estuary is greatest during low flow seasons and critically dry years. Where selenium undergoes reactions typical of low flow or longer residence time, highly problematic bioaccumulation in prey (food) is forecast. Surf scoter, greater and lesser scaup, and white sturgeon appear to be most at risk because these Bay-Delta predators feed on deposit and filter-feeding bivalves. Recent findings add Sacramento splittail and Dungeness crab to that list. During the low flow season of critically dry years, forecasted selenium concentrations in water, particulate matter, prey (diet), and predator tissue exceed guidelines with a high certainty of producing adverse effects under the most likely load scenario from a proposed San Luis Drain extension. High flows afford some protection under certain conditions in modeled San Joaquin River scenarios. However, meeting a combined goal of releasing a specific load during maximum flows and keeping selenium concentrations in the river below a certain objective to protect against bioaccumulation may not always be attainable. Management of the San Joaquin River on a constant concentration basis also could create problematic bioaccumulation during a wet year, especially during the low flow season, because high flows translate to high loads that are not always offset by seasonal river inflows. Prior to refinery cleanup, selenium contamination was sufficient to threaten reproduction in key species within the Bay-Delta ecosystems and human health advisories were posted based on selenium concentrations in tissues of diving ducks. During this time, selenium concentrations in the Bay-Delta were well below the most stringent recommended water quality criterion [1 microgram per liter (1 µg/L)]. Enhanced biogeochemical transformations to bioavailable particulate selenium and efficient bioaccumulation by bivalves characterized the system. If these biogeochemical conditions continue to prevail and agricultural selenium sources replace or exceed refinery sources, ecological forecasts suggest the risk of adverse effects will be difficult to eliminate under an out-of-valley resolution to the selenium problem. The Bay-Delta selenium model presented here is a systematic approach for conducting forecasts of the ecological effects from selenium on aquatic food webs. It is a new tool that links and models the major processes leading from loads through consumer organisms to predators. It also is a feasible approach for site-specific analysis and could provide a framework for developing new protective selenium foodweb guidelines and predator criteria. Model components that help ensure understanding ecosystems and the basis of environmental protection are (1) contaminant concentrations and speciation in sources, such as particulate material, that most influence bioavailability; (2) bioaccumulation models that calculate concentrations in diet, specifically in bivalves of the Bay-Delta that act as sensitive indicators of selenium contamination; (3) food-web type that determines what animals are threatened and when; and (4) multiple media concentrations (water, particulate material, and tissue of prey and predators) that, in-combination, determine risk or hazard.

California↗

USGS2022

Understanding the impacts of surface-groundwater conditions on stream fishes under altered baseflow conditions

Persistence of aquatic fauna depends on the conditions and connectivity of surface water and groundwater. In light of altered baseflows and both current and future predicted increases in stream temperatures, it is important to assess current thermal conditions, examine thermal responses of aquatic fauna, and evaluate water-management practices. Our study objectives were to determine (1) how changes in baseflow levels in the Kiamichi River influence hyporheic exchange, which correspondingly influences temperature at the reach scale; (2) temperature tolerances of stream fishes as a means for predicting how habitat complexity influences stream-fish populations; and (3) assess how dam releases influence the downstream temperature and dissolved oxygen regime during the low-flow period. We quantified hyporheic exchange at four reaches and, as expected, found higher groundwater exchange via transient storage occurred at the upstream sites. The net groundwater flux estimation was negative for the majority of reaches indicating that surface water is lost to groundwater during summer (i.e., losing), baseflow conditions. We determined critical thermal maximum (CTMax) for 17 stream fishes and thermal tolerances ranged 32-38°C. We determined the average thermal tolerance for two habitat fish guilds to calculate changes in thermal stress due to hypothetical reservoir release scenarios. We developed a process-based Water Quality Analysis Simulation Program model to predict downstream temperature conditions over 74-km of river in response to reservoir releases that corresponded to discharges of 0.00 (control), 0.34, 0.59, 0.76, 1.13, and 1.50 m3/s. Based on the dissolved oxygen conditions observed in 2015 and 2017 and biological oxygen demand sampling results, reservoir releases did not directly reduce dissolved oxygen concentrations in the Kiamichi River (though dissolved oxygen concentrations are limited to current water-release strategies by the managing agency). We simulated three scenarios using three water-release temperatures: 27.64°C, 26.00°C and 24.07°C that corresponded to average reservoir temperatures at gate locations on the dam. We compared the predicted temperature time series with CTMax of two fish-habitat guilds to quantify the cumulative time when stream fishes experienced severe thermal stress downstream from Sardis Reservoir. According to our simulations, reservoir releases would be capable of regulating downstream water temperature during the summer baseflow period. The 0.00 m3/s scenario resulted in 130 h of thermal stress for benthic fishes, and 73 h for mid-column fishes. As expected, thermal relief increased with increasing release magnitude and decreasing release water temperature. The 0.34 m3/s release scenario reduced thermal stress (range is simulations from the top and bottom gate) by 11-18% for mid-column fishes and 8-12% for benthic fishes with an effective distance (where the cumulative time above CTMax was reduced by half) of 1-2 km for both guilds. The 0.59 m3/s release scenario reduced thermal stress by 18-25% for mid-column fishes and 12-20% for benthic fishes with effective distances of 4-8 km and 2-7 km, respectively. Three releases representing pre-dam flow magnitudes (0.76, 1.13 and 1.50 m3/s released from top gate) reduced thermal stress up to 46% for mid-column fishes and 41% for benthic fishes with an effective distance of 13-16 km, respectively. Lastly, we quantified temperature-induced stress via whole-body cortisol concentration of six stream fishes in response to prolonged thermal exposure at two temperatures (27°C and 32°C). We found no difference in cortisol levels between temperatures for any of the six species, indicating acclimation to elevated temperatures during the test period. However, Highland Stoneroller Campostoma spadiceum expressed cortisol concentrations greater than typical basal levels at both temperatures, suggesting stress from factors other than temperature (i.e., captivity). Our results suggest different reservoir-release options could improve downstream thermal-fish habitat during the summer baseflow period.

Cooperator Science Series↗

USGS2024

The state of the science and practice of stream restoration in the Chesapeake: Lessons learned to inform better implementation, assessment and outcomes

The Chesapeake Bay Program’s (CBP) Science and Technical Advisory Committee (STAC) organized and led a workshop on the science and practice of stream restoration in order to summarize the state of knowledge in order to identify ways to improve stream restoration outcomes. The workshop identified a general framework for explaining the main factors leading to stream restoration outcomes: stream degradation has occurred, leading to regulatory and policy motivations that prioritize project goals, which leads to restoration approaches, assessment and monitoring efforts, and ultimately stream restoration outcomes. In the Chesapeake Bay watershed, stream restoration often occurs in response to Clean Water Act (CWA) mandates to reduce nitrogen, phosphorus, and sediment loads to the Bay. Reviews of stream restoration outcomes summarized at the workshop showed that, in general, stream restorations have led to minimal improvement to stream aquatic biota, effective ‘stabilization’ of channel form over time, moderate improvements to water quality, and short-term negative impacts to riparian vegetation. The fundamental finding of the workshop was that often the primary goal of stream restoration projects is to improve geomorphic stability in the restored reach and downstream water quality, and not to improve local ecological conditions through ‘uplift’ (improvement of one or more ecosystem functions through a restorative activity; a term defined in Appendix D), and therefore these projects often do not improve aquatic macroinvertebrate or fish communities. This conflict in goals is a shortcoming of the currently most common regulatory driver for stream restoration (reducing downstream loads of N, P, and sediment) that could be addressed directly through diversifying goals to include biotic uplift, as biological benefit is an assumed condition for the permitting and crediting of stream restoration projects. It is also likely that current understanding of stressors and drivers of stream ecosystem health is insufficient, and that reach-scale restoration focused on geomorphic restoration is not removing the actual sources of stream health impairment that may arise in the upstream watershed. More science could help to identify how to improve the ecological condition of streams through management. The outcome of stream restoration monitoring has revealed that while geomorphic and hydrodynamic functions of stream restoration projects may be achieved, biotic stream function improvements remain elusive. As such, ensuring uplift may be achieved by avoiding restoration projects that risk resources in higher-quality streams and riparian corridors. Reach-scale restoration often does not effectively mitigate the watershed-scale stressors of stream ecosystems. If a desired outcome of stream restoration includes ecological uplift, then focusing efforts on improving stream ecology could help meet that goal.

Chesapeake Bay watershed↗

USGS2002

Natal and breeding dispersal of northern spotted owls

We studied the dispersal behavior of 1,475 northern spotted owls (Strix occidentalis caurina) during banding and radio-telemetry studies in Oregon and Washington in 1985-1996. The sample included 324 radio-marked juveniles and 1,151 banded individuals (711 juveniles, 440 non-juveniles) that were recaptured or resighted after dispersing from the initial banding location. Juveniles typically left the nest during the last week in May and the first two weeks in June (x?? ?? SE = 8 June ?? 0.53 days, n = 320, range = 15 May-1 July), and spent an average of 103.7 days in the natal territory after leaving the nest (SE = 0.986 days, n = 137, range = 76-147 days). The estimated mean date that juveniles began to disperse was 19 September in Oregon (95% CI = 17-21 September) and 30 September in Washington (95% CI = 25 September-4 October). Mean dispersal dates did not differ between males and females or among years. Siblings dispersed independently. Dispersal was typically initiated with a series of rapid movements away from the natal site during the first few days or weeks of dispersal. Thereafter, most juveniles settled into temporary home ranges in late October or November and remained there for several months. In February-April there was a second pulse of dispersal activity, with many owls moving considerable distances before settling again in their second summer. Subsequent dispersal patterns were highly variable, with some individuals settling permanently in their second summer and others occupying a series of temporary home ranges before eventually settling on territories when they were 2-5 years old. Final dispersal distances ranged from 0.6-111.2 km for banded juveniles and 1.8-103.5 km for radio-marked juveniles. The distribution of dispersal distances was strongly skewed towards shorter distances, with only 8.7% of individuals dispersing more than 50 km. Median natal dispersal distances were 14.6 km for banded males, 13.5 km for radio-marked males, 24.5 km for banded females, and 22.9 km for radio-marked females. On average, banded males and females settled within 4.2 and 7.0 territory widths of their natal sites, respectively. Maximum and final dispersal distances were largely independent of the number of days that juveniles were tracked. Although statistical tests of dispersal direction based on all owls indicated that direction of natal dispersal was non-random, the mean angular deviations and 95% CI's associated with the samples were large, and r-values (vector length) were small. This lead us to conclude that significant test results were the result of large sample size and were not biologically meaningful. Our samples were not large enough to test whether dispersal direction from individual territories was random. In the sample of radio-marked owls, 22% of males and 44% of females were paired at 1 year of age, but only 1.5% of males and 1.6% of females were actually breeding at 1 year of age. At 2 years of age, 68% of males and 77% of females were paired, but only 5.4% of males and 2.6% of females were breeding. In contrast to the radio-marked owls, most juveniles that were banded and relocated at 1 or 2 years of age were paired, although few were breeding. Although recruitment into the territorial population typically occurred when owls were 1-5 years old, 9% of banded juveniles were not recaptured until they were > 5 years old. We suspect that our estimates of age at recruitment of banded owls are biased high because of the likelihood that some individuals were not recaptured in the first year that they entered the territorial population. A minimum of 6% of the banded, non-juvenile owls on our demographic study areas changed territories each year (breeding dispersal). The likelihood of breeding dispersal was higher for females, young owls, owls that did not have a mate in the previous year, and owls that lost their mate from the previous year through death or divorce. Mean and median distances dispersed by adults were

Wildlife Monographs↗

USGS2018

Water column nutrient processing rates in rivermouths of Green Bay (Lake Michigan)

Understanding the quantity and form of nutrient loads to large lakes is necessary to understand controls over primary production, phytoplankton community composition and the production of phytotoxins. Nutrient loading estimates to large lakes are primarily made at stream gages that are deliberately placed outside the direct influence of lake processes, but these estimates cannot take into account processes that occur in the biologically active river-to-lake transition zone. These transition zones (rivermouths) sometimes alter nutrient concentrations and ratios substantially, but few studies have directly measured processing rates of nutrients within rivermouths. From April through September 2016, we conducted 23 water column incubation experiments to measure nutrient loss rates in four rivermouths. First order loss rates ( K ) for inorganic nitrogen (N) and phosphorus (P) indicated greater loss in light than in dark treatments, suggesting primary production increases N and P removal. Variability in K was high across both time and space, and the measured environmental parameters did not appear to be strongly associated with this variation in K for most N and P forms. If the measured K values and water residence times are accurate, then between 0 and 99% of the inorganic P and nitrates entering the rivermouth would be lost (i.e., converted to organic or particulate P). In late summer, Fox River discharge is low and residence times are usually long, which allow for much higher proportional nutrient removal in the water column. Water column processing appears to be capable of transforming large quantities of dissolved N and P to particulate forms and thus altering its transport and presumably its bioavailability.

Green Bay, Lake Michigan↗

USGS2017

Mechanisms of nitrogen deposition effects on temperate forest lichens and trees

We review the mechanisms of deleterious nitrogen (N) deposition impacts on temperate forests, with a particular focus on trees and lichens. Elevated anthropogenic N deposition to forests has varied effects on individual organisms depending on characteristics both of the N inputs (form, timing, amount) and of the organisms (ecology, physiology) involved. Improved mechanistic knowledge of these effects can aid in developing robust predictions of how organisms respond to either increases or decreases in N deposition. Rising N levels affect forests in micro- and macroscopic ways from physiological responses at the cellular, tissue, and organism levels to influencing individual species and entire communities and ecosystems. A synthesis of these processes forms the basis for the overarching themes of this paper, which focuses on N effects at different levels of biological organization in temperate forests. For lichens, the mechanisms of direct effects of N are relatively well known at cellular, organismal, and community levels, though interactions of N with other stressors merit further research. For trees, effects of N deposition are better understood for N as an acidifying agent than as a nutrient; in both cases, the impacts can reflect direct effects on short time scales and indirect effects mediated through long-term soil and belowground changes. There are many gaps on fundamental N use and cycling in ecosystems, and we highlight the most critical gaps for understanding potential deleterious effects of N deposition. For lichens, these gaps include both how N affects specific metabolic pathways and how N is metabolized. For trees, these gaps include understanding the direct effects of N deposition onto forest canopies, the sensitivity of different tree species and mycorrhizal symbionts to N, the influence of soil properties, and the reversibility of N and acidification effects on plants and soils. Continued study of how these N response mechanisms interact with one another, and with other dimensions of global change, remains essential for predicting ongoing changes in lichen and tree populations across North American temperate forests.

Ecosphere↗

USGS2021

What can commercial fishery data in the Great Lakes reveal about juvenile sea lamprey (Petromyzon marinus) ecology and management?

The Laurentian Great Lakes of North America support a large and profitable freshwater fishery, but one continuously beset by parasitism from the invasive sea lamprey ( Petromyzon marinus ). Despite being the life stage that inflicts damage to the fishery, therefore necessitating a bi-national control program, our knowledge of juvenile sea lamprey ecology is poor and their response to control efforts are not assessed. Incidental capture of juvenile sea lamprey by commercial fishers is one means to collect data on this enigmatic life stage, and in Lake Huron such data have been collated since 1967. Here, we explore incidental captures of juvenile sea lamprey and their hosts from northern Lake Huron between 1987 and 2017 ( n = 33,246 observations) to address four objectives. Firstly, we document collection efforts by fishers to provide historical context to the dataset. Secondly, we pose and test a series of questions related to fishery encounter, host selection, growth, distribution, and sex ratio to highlight how these types of data can be informative regarding juvenile sea lamprey ecology. Results presented here could be used to develop biological hypotheses to be addressed in future work. Thirdly, we directly assessed whether juvenile sea lamprey capture data could be useful in corroborating trends observed in adult sea lamprey abundance and wounding, as well as in identifying abundance and wounding hotspots. Lastly, we summarize research and outreach efforts that have benefited from the capture of juvenile sea lamprey in recent years.

Great Lakes↗

USGS2019

The importance of natural versus human factors for ecological conditions of streams and rivers

Streams are influenced by watershed-scale factors, such as climate, geology, topography, hydrology, and soils, which mostly vary naturally among sites, as well as human factors, agriculture and urban development. Thus, natural factors could complicate assessment of human disturbance. In the present study, we use structural equation modeling and data from the 2008-2009 United States National Rivers and Streams Assessment to quantify the relative importance of watershed-scale natural and human factors for in-stream conditions. We hypothesized that biological condition, represented using a diatom multimetric index (MMI), is directly affected by in-stream physicochemical environment, which in turn is regulated by natural and human factors. We evaluated this hypothesis at both national and ecoregion scales to understand how influences vary among regions. We found that direct influences of in-stream environment on diatom MMIs were greater than natural and human factors at the national scale and in all but one ecoregion. Meanwhile, in-stream environments were jointly explained by natural variations in precipitation, base flow index, hydrological stability, % volcanic rock, soil water table depth, and soil depth and by human factors measured as % crops, % other agriculture, and % urban land use. The explained variance of in-stream environment by natural and human factors ranged from 0.30 to 0.75, for which natural factors independently accounted for the largest proportion of explained variance at the national scale and in seven ecoregions. Covariation between natural and human factors accounted for a higher proportion of explained variance of in-stream environment than unique effects of human factors in most ecoregions. Ecoregions with relatively weak effects by human factors had relatively high levels of covariance, high levels of human disturbance, or small ranges in human disturbance. We conclude that accounting for effects of natural factors and their covariation with human factors will be important for accurate ecological assessments.

Science of the Total Environment↗

USGS2009

Untangling the biological contributions to soil stability in semiarid shrublands

Communities of plants, biological soil crusts (BSCs), and arbuscular mycorrhizal (AM) fungi are known to influence soil stability individually, but their relative contributions, interactions, and combined effects are not well understood, particularly in arid and semiarid ecosystems. In a landscape-scale field study we quantified plant, BSC, and AM fungal communities at 216 locations along a gradient of soil stability levels in southern Utah, USA. We used multivariate modeling to examine the relative influences of plants, BSCs, and AM fungi on surface and subsurface stability in a semiarid shrubland landscape. Models were found to be congruent with the data and explained 35% of the variation in surface stability and 54% of the variation in subsurface stability. The results support several tentative conclusions. While BSCs, plants, and AM fungi all contribute to surface stability, only plants and AM fungi contribute to subsurface stability. In both surface and subsurface models, the strongest contributions to soil stability are made by biological components of the system. Biological soil crust cover was found to have the strongest direct effect on surface soil stability (0.60; controlling for other factors). Surprisingly, AM fungi appeared to influence surface soil stability (0.37), even though they are not generally considered to exist in the top few millimeters of the soil. In the subsurface model, plant cover appeared to have the strongest direct influence on soil stability (0.42); in both models, results indicate that plant cover influences soil stability both directly (controlling for other factors) and indirectly through influences on other organisms. Soil organic matter was not found to have a direct contribution to surface or subsurface stability in this system. The relative influence of AM fungi on soil stability in these semiarid shrublands was similar to that reported for a mesic tallgrass prairie. Estimates of effects that BSCs, plants, and AM fungi have on soil stability in these models are used to suggest the relative amounts of resources that erosion control practitioners should devote to promoting these communities. This study highlights the need for system approaches in combating erosion, soil degradation, and arid-land desertification.

Utah↗

USGS2007

Geologic map of the Cameron 30' x 60' quadrangle, Coconino County, northern Arizona

This geologic map is the result of a cooperative effort of the U.S. Geological Survey and the National Park Service in collaboration with the Navajo Nation and the Hopi Tribe to provide regional geologic information for resource management officials of the National Park Service, U.S. Forest Service, Navajo Indian Reservation (herein the Navajo Nation), the Hopi Tribe, and for visitor information services at Grand Canyon National Park, Arizona as well as private enterprises that have lands within the area. The Cameron 30’ x 60’ quadrangle encompasses approximately 5,018 km 2 (1,960 mi 2 ) within Coconino County, northern Arizona and is bounded by longitude 111° to 112° W., and latitude 35°30’ to 36° N. The map area is within the southern Colorado Plateaus geologic province (herein Colorado Plateau). The map area is locally subdivided into six physiographic areas: the Grand Canyon (including the Little Colorado River Gorge), Coconino Plateau, Marble Plateau, Little Colorado River Valley, Moenkopi Plateau, and the San Francisco Volcanic Field as defined by Billingsley and others, 1997 (fig. 1). Elevations range from about 2,274 m (7,460 ft) at the south rim of Grand Canyon along State Highway 64 to about 994 m (3,260 ft) in the Grand Canyon, northeast quarter of the map area. The Cameron quadrangle is one of the few remaining areas near the Grand Canyon where uniform geologic mapping was needed for geologic connectivity of the regional geologic framework that will be useful to federal, state, and private land resource managers who direct environmental and land management programs such as range management, biological studies, flood control, and water resource investigations. The geologic information presented will support future and ongoing local geologic investigations and associated scientific studies of all disciplines within the Cameron quadrangle area.

Arizona↗

USGS2016

Patterns and controls on nitrogen cycling of biological soil crusts

Biocrusts play a significant role in the nitrogen [N ] cycle within arid and semi-arid ecosystems, as they contribute major N inputs via biological fixation and dust capture, harbor internal N transformation processes, and direct N losses via N dissolved, gaseous and erosional loss processes (Fig. 1). Because soil N availability in arid and semi-arid ecosystems is generally low and may limit net primary production (NPP), especially during periods when adequate water is available, understanding the mechanisms and controls of N input and loss pathways in biocrusts is critically important to our broader understanding of N cycling in dryland environments. In particular, N cycling by biocrusts likely regulates short-term soil N availability to support vascular plant growth, as well as long-term N accumulation and maintenance of soil fertility. In this chapter, we review the influence of biocrust nutrient input, internal cycling, and loss pathways across a range of biomes. We examine linkages between N fixation capabilities of biocrust organisms and spatio-temporal patterns of soil N availability that may influence the longer-term productivity of dryland ecosystems. Lastly, biocrust influence on N loss pathways such as N gas loss, leakage of N compounds from biocrusts, and transfer in wind and water erosion are important to understand the maintenance of dryland soil fertility over longer time scales. Although great strides have been made in understanding the influence of biocrusts on ecosystem N cycling, there are important knowledge gaps in our understanding of the influence of biocrusts on ecosystem N cycling that should be the focus of future studies. Because work on the interaction of N cycling and biocrusts was reviewed in Belnap and Lange (2003), this chapter will focus primarily on research findings that have emerged over the last 15 years (2000-2015).

Book chapter↗