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At least 703 records · Page 39Linked to original sources

USGS2006

Pleistocene corals of the Florida keys: Architects of imposing reefs - Why?

Five asymmetrical, discontinuous, stratigraphically successive Pleistocene reef tracts rim the windward platform margin off the Florida Keys. Built of large head corals, the reefs are imposing in relief (???30 m high by 1 km wide), as measured from seismic profiles. Well dated to marine oxygen isotope substages 5c, 5b, and 5a, corals at depth are inferred to date to the Stage 6/5 transition. The size of these reefs attests to late Pleistocene conditions that repeatedly induced vigorous and sustained coral growth. In contrast, the setting today, linked to Florida Bay and the Gulf of Mexico, is generally deemed marginal for reef accretion. Incursion onto the reef tract of waters that contain seasonally inconsistent temperature, salinity, turbidity, and nutrient content impedes coral growth. Fluctuating sea level and consequent settings controlled deposition. The primary dynamic was position of eustatic zeniths relative to regional topographic elevations. Sea level during the past 150 ka reached a maximum of ???10.6 m higher than at present ???125 ka, which gave rise to an inland coral reef (Key Largo Limestone) and ooid complex (Miami Limestone) during isotope substage 5e. These formations now form the Florida Keys and a bedrock ridge beneath The Quicksands (Gulf of Mexico). High-precision radiometric ages and depths of dated corals indicate subsequent apices remained ???15 to 9 m, respectively, below present sea level. Those peaks provided accommodation space sufficient for vertical reef growth yet exposed a broad landmass landward of the reefs for >100 ka. With time, space, lack of bay waters, and protection from the Gulf of Mexico, corals thrived in clear oceanic waters of the Gulf Stream, the only waters to reach them.

Journal of Coastal Research↗

USGS2016

Prediction of pesticide toxicity in Midwest streams

The occurrence of pesticide mixtures is common in stream waters of the United States, and the impact of multiple compounds on aquatic organisms is not well understood. Watershed Regressions for Pesticides (WARP) models were developed to predict Pesticide Toxicity Index (PTI) values in unmonitored streams in the Midwest and are referred to as WARP-PTI models. The PTI is a tool for assessing the relative toxicity of pesticide mixtures to fish, benthic invertebrates, and cladocera in stream water. One hundred stream sites in the Midwest were sampled weekly in May through August 2013, and the highest calculated PTI for each site was used as the WARP-PTI model response variable. Watershed characteristics that represent pesticide sources and transport were used as the WARP-PTI model explanatory variables. Three WARP-PTI models—fish, benthic invertebrates, and cladocera—were developed that include watershed characteristics describing toxicity-weighted agricultural use intensity, land use, agricultural management practices, soil properties, precipitation, and hydrologic properties. The models explained between 41 and 48% of the variability in the measured PTI values. WARP-PTI model evaluation with independent data showed reasonable performance with no clear bias. The models were applied to streams in the Midwest to demonstrate extrapolation for a regional assessment to indicate vulnerable streams and to guide more intensive monitoring.

Midwest↗

USGS2017

Nitrate reduction mechanisms and rates in an unconfined eogenetic karst aquifer in two sites with different redox potential

This study integrates push-pull tracer tests (PPTT) with microbial characterization of extracted water via quantitative polymerase chain reaction (qPCR) and reverse transcriptase qPCR (RT-qPCR) of selected functional N transformation genes to quantify nitrate reduction mechanisms and rates in sites with different redox potential in a karst aquifer. PPTT treatments with nitrate (AN) and nitrate-fumarate (ANC) were executed in two wells representing anoxic and oxic geochemical end-members. Oxic aquifer zero-order nitrate loss rates (mmol L −1 h −1 ) were similar for AN and ANC treatment, ranging from 0.03 ± 0.01 to 0.05 ± 0.01. Anoxic aquifer zero-order nitrate loss rates ranged from 0.03 ± 0.02 (AN) to 0.13 ± 0.02 (ANC). Microbial characterization indicates mechanisms influencing these rates were dissimilatory nitrate reduction to ammonium (DNRA) at the anoxic site with AN treatment, assimilatory reduction of nitrate to ammonium (ANRA) with ANC treatment in the water column at both sites, and additional documented nitrate reduction that occurred in unsampled biofilms. With carbon treatment, total numbers of microbes (16S rRNA genes) significantly increased (fourteenfold to thirtyfold), supporting stimulated growth with resulting ANRA. Decreased DNRA gene concentrations ( nrfA DNA) and increased DNRA activity ratio (nrfA-cDNA/DNA) supported the assertion that DNRA occurred in the anoxic zone with AN and ANC treatment. Furthermore, decreased DNRA gene copy numbers at the anoxic site with ANC treatment suggests that DNRA microbes in the anoxic site are chemolithoautotrophic. Increased RT-qPCR denitrification gene expression ( nirK and nirS ) was not observed in water samples, supporting that any observed NO 3 -N loss due to denitrification may be occurring in unsampled microbial biofilms.

Florida↗

USGS2009

Sources and distribution of organic compounds using passive samplers in Lake Mead National Recreation Area, Nevada and Arizona, and their implications for potential effects on aquatic biota.

Th e delineation of lateral and vertical gradients of organic contaminants in lakes is hampered by low concentrations and nondetection of many organic compounds in water. Passive samplers (semipermeable membrane devices [SPMDs] and polar organic chemical integrative samplers [POCIS]) are well suited for assessing gradients because they can detect synthetic organic compounds (SOCs) at pg L-1 concentrations. Semi-permeable membrane devices and POCIS were deployed in Lake Mead, at two sites in Las Vegas Wash, at four sites across Lake Mead, and in the Colorado River downstream from Hoover Dam. Concentrations of hydrophobic SOCs were highest in Las Vegas Wash downstream from waste water and urban inputs and at 8 m depth in Las Vegas Bay (LVB) where Las Vegas Wash enters Lake Mead. Th e distribution of hydrophobic SOCs showed a lateral distribution across 10 km of Lake Mead from LVB to Boulder Basin. To assess possible vertical gradients of SOCs, SPMDs were deployed at 4-m intervals in 18 m of water in LVB. Fragrances and legacy SOCs were found at the greatest concentrations at the deepest depth. Th e vertical gradient of SOCs indicated that contaminants were generally confi ned to within 6 m of the lake bottom during the deployment interval. The high SOC concentrations, warmer water temperatures, and higher total dissolved solids concentrations at depth are indicative of a plume of Las Vegas Wash water moving along the lake bottom. Th e lateral and vertical distribution of SOCs is discussed in the context of other studies that have shown impaired health of fish exposed to SOCs.

Journal of Environmental Quality↗

USGS2015

Temperature profile around a basaltic sill intruded into wet sediments

The transfer of heat into wet sediments from magmatic intrusions or lava flows is not well constrained from field data. Such field constraints on numerical models of heat transfer could significantly improve our understanding of water–lava interactions. We use experimentally calibrated pollen darkening to measure the temperature profile around a basaltic sill emplaced into wet lakebed sediments. It is well known that, upon heating, initially transparent palynomorphs darken progressively through golden, brown, and black shades before being destroyed; however, this approach to measuring temperature has not been applied to volcanological questions. We collected sediment samples from established Miocene fossil localities at Clarkia, Idaho. Fossils in the sediments include pollen from numerous tree and shrub species. We experimentally calibrated changes in the color of Clarkia sediment pollen and used this calibration to determine sediment temperatures around a Miocene basaltic sill emplaced in the sediments. Results indicated a flat temperature profile above and below the sill, with T > 325 °C within 1 cm of the basalt-sediment contact, near 300 °C at 1–2 cm from the contact, and ~ 250 °C at 1 m from the sill contact. This profile suggests that heat transport in the sediments was hydrothermally rather than conductively controlled. This information will be used to test numerical models of heat transfer in wet sediments on Earth and Mars.

Journal of Volcanology and Geothermal Research↗

USGS2018

Enhancement of a parsimonious water balance model to simulate surface hydrology in a glacierized watershed

The U.S. Geological Survey monthly water balance model (MWBM) was enhanced with the capability to simulate glaciers in order to make it more suitable for simulating cold region hydrology. The new model, MWBMglacier, is demonstrated in the heavily glacierized and ecologically important Copper River watershed in Southcentral Alaska. Simulated water budget components compared well to satellite‐based observations and ground measurements of streamflow, evapotranspiration, snow extent, and total water storage, with differences ranging from 0.2% to 7% of the precipitation flux. Nash Sutcliffe efficiency for simulated and observed streamflow was greater than 0.8 for six of eight stream gages. Snow extent matched satellite‐based observations with Nash Sutcliffe efficiency values of greater than 0.89 in the four Copper River ecoregions represented. During the simulation period 1949 to 2009, glacier ice melt contributed 25% of total runoff, ranging from 12% to 45% in different tributaries, and glacierized area was reduced by 6%. Statistically significant ( p < 0.05) decreasing and increasing trends in annual glacier mass balance occurred during the multidecade cool and warm phases of the Pacific Decadal Oscillation, respectively, reinforcing the link between climate perturbations and glacier mass balance change. The simulations of glaciers and total runoff for a large, remote region of Alaska provide useful data to evaluate hydrologic, cryospheric, ecologic, and climatic trends. MWBM glacier is a valuable tool to understand when, and to what extent, streamflow may increase or decrease as glaciers respond to a changing climate.

Journal of Geophysical Research F: Earth Surface↗

USGS2023

Evaluating regional length limits in freshwater fisheries

Length limits are often used in recreational fisheries management to prevent overharvest and manipulate fish size distributions. These regulations are ideally customized to meet water-specific stock dynamics and fishery objectives. However, in districts with numerous discrete waters, fisheries are commonly managed with a universal regional regulation. Evaluating alternative regional length limits requires consideration of management objectives that may not be important at the single-system level but that emerge as relevant at the regional scale, such as uniformity of regional harvest, diversity of average catch sizes, and opportunity to harvest. We developed a flexible tool for evaluating regional length limits. The tool joins the well-established Beverton–Holt yield-per-recruit model with elements of decision-support methods. The model quantifies regional management objectives as utility functions that are weighted and summed into a single value used to evaluate alternative length limits. The flexibility of the tool stems from its capacity to consider a mixture of stock parameters and associated uncertainty to evaluate multiple length limits, weighting an array of regional fishery objectives quantified by various performance metrics. This adjustability affords flexibility to consider a diversity of options that can stimulate innovation in setting regional length limits. We demonstrate the model by evaluating varying length limits on fishery objectives related to the management of hypothetical yellow perch ( Perca flavescens ) populations and real black crappie ( Pomoxis nigromaculatus ) populations.

Canadian Journal Fisheries and Aquatic Sciences↗

USGS2009

Monitoring and modeling shoreline response due to shoreface nourishment on a high-energy coast

Shoreface nourishment can be an efficient technique to feed sediment into the littoral zone without the order of magnitude cost increase incurred by directly nourishing the beach. An erosion hot spot at Ocean Beach in San Francisco, California, USA, threatens valuable public infrastructure as well as safe recreational use of the beach. In an effort to reduce the erosion at this location, a new beneficial reuse plan was implemented in May 2005 for the sediment dredged annually from the main shipping channel at the mouth of San Francisco Bay. From 2005 to 2007, approximately 230,000 m of sand was placed annually at depths between 9 and 14 m, in a location where strong tidal currents and open-ocean waves could potentially feed sediment onto the section of beach experiencing critical erosion. The evolution of the disposal mound and adjacent beach were monitored with 12 multibeam bathymetric surveys, and over 40 high-resolution beach topographic surveys. In addition, sediment transport processes were investigated using sediment grab samples, acoustic Doppler profilers, and two separate models: a cross-shore profile model (UNIBEST-TC) and a coastal area model (Delft3D). The results of the monitoring and modeling demonstrate that the disposal mound may be effective in dissipating wave energy striking this vulnerable stretch of coast with negligible shadowing effects, but a positive shoreline response can only be achieved by placing the sediment in water depths less than 5 m.

California↗

USGS2000

From safe yield to sustainable development of water resources - The Kansas experience

This paper presents a synthesis of water sustainability issues from the hydrologic perspective. It shows that safe yield is a flawed concept and that sustainability is an idea that is broadly used but perhaps not well understood. In general, the sustainable yield of an aquifer must be considerably less than recharge if adequate amounts of water are to be available to sustain both the quantity and quality of streams, springs, wetlands, and ground-water-dependent ecosystems. To ensure sustainability, it is imperative that water limits be established based on hydrologic principles of mass balance. To establish water-use policies and planning horizons, the transition curves of aquifer systems from ground-water storage depletion to induced recharge of surface water need to be developed. Present-day numerical models are capable of generating such transition curves. Several idealized examples of aquifer systems show how this could be done. Because of the complexity of natural systems and the uncertainties in characterizing them, the current philosophy underlying sustainable management of water resources is based on the interconnected systems approach and on adaptive management. Examples of water-resources management from Kansas illustrate some of these concepts in a real-world setting. Some of the hallmarks of Kansas water management are the formation of local ground-water management districts, the adoption of minimum streamflow standards, the use of modified safe-yield policies in some districts, the implementation of integrated resource planning by the City of Wichita, and the subbasin water-resources management program in potential problem areas. These are all appropriate steps toward sustainable development. The Kansas examples show that local decision-making is the best way to fully account for local variability in water management. However, it is imperative that public education and involvement be encouraged, so that system complexities and constraints are better understood and overly simplistic solutions avoided. (C) 2000 Elsevier Science B.V.This paper presents a synthesis of water sustainability issues from the hydrologic perspective. It shows that safe yield is a flawed concept and that sustainability is an idea that is broadly used but perhaps not well understood. In general, the sustainable yield of an aquifer must be considerably less than recharge if adequate amounts of water are to be available to sustain both the quantity and quality of streams, springs, wetlands, and ground-water-dependent ecosystems. To ensure sustainability, it is imperative that water limits be established based on hydrologic principles of mass balance. To establish water-use policies and planning horizons, the transition curves of aquifer systems from ground-water storage depletion to induced recharge of surface water need to be developed. Present-day numerical models are capable of generating such transition curves. Several idealized examples of aquifer systems show how this could be done. Because of the complexity of natural systems and the uncertainties in characterizing them, the current philosophy underlying sustainable management of water resources is based on the interconnected systems approach and on adaptive management. Examples of water-resources management from Kansas illustrate some of these concepts in a real-world setting. Some of the hallmarks of Kansas water management are the formation of local ground-water management districts, the adoption of minimum streamflow standards, the use of modified safe-yield policies in some districts, the implementation of integrated resource planning by the City of Wichita, and the subbasin water-resources management program in potential problem areas. These are all appropriate steps toward sustainable development. The Kansas examples show that local decision-making is the best way to fully account for local variability in water management. However, it is imperative that public education and involv

Journal of Hydrology↗

USGS2015

U.S. Geological Survey science for the Wyoming Landscape Conservation Initiative—2014 annual report

This is the seventh report produced by the U.S. Geological Survey (USGS) for the Wyoming Landscape Conservation Initiative (WLCI) to detail annual activities conducted by the USGS for addressing specific management needs identified by WLCI partners. In FY2014, there were 26 projects, including a new one that was completed, two others that were also completed, and several that entered new phases or directions. The 26 projects fall into several categories: (1) synthesizing and analyzing existing data to identify current conditions on the landscape and using the data to develop models for projecting past and future landscape conditions; (2) monitoring indicators of ecosystem conditions and the effectiveness of on-the-ground habitat projects; (3) conducting research to elucidate the mechanisms underlying wildlife and habitat responses to changing land uses; (4) managing and making accessible the large number of databases, maps, and other products being developed; and (5) coordinating efforts among WLCI partners, helping them use USGS-developed decision-support tools, and integrating WLCI outcomes with future habitat enhancement and research projects. The new (completed) project was the development and publication of a public outreach piece for visitors of Fossil Butte National Monument. The final product was a USGS Fact Sheet that capitalized on previously collected elk-monitoring data to interpret the ecology of the Monument’s elk population and the importance of the Monument’s habitats to this highly visible wildlife species. One of the completed projects entailed developing and evaluating a synthetic approach to high-resolution satellite imagery for use in effectiveness monitoring, which culminated in a journal article. The other completed project was a coalescing of two similar tasks under data and information management that pertain to Web application development and the development of outreach and graphic products into a single integrated project that focuses on developing and maintaining/upgrading Web applications and other tools for visualizing, mapping, and using geospatial data. Major accomplishments for FY2014 included several publications, including Part B of an energy resources map that (with Part A) depicts coal, wind, oil, gas, oil shale, uranium, and solar energy production in the WLCI region. Two published works associated with sage-grouse included a Wildlife Monograph on prioritizing species’ habitats across large landscapes, multiple seasons, and novel areas (using sage-grouse in Wyoming as an example), and a USGS Data Series report that includes both the data used in the habitat-prioritization models and the habitat prioritization models developed for sage-grouse. Our Science Team also published a framework for conducting large, collaborative projects that rely on geospatial data, and a paper that describes the efficacy of fusing satellite data collected at various resolutions for measuring and monitoring vegetation changes. These products are all invaluable tools for maximizing the efficiency and effectiveness of managing species of concern, conducting future landscape-scale assessments, and monitoring status and trends of landscape conditions. Other highlights of FY2014 included a renewed effort to gather and analyze wildlife and habitat status and trend data for the WLCI Interagency Monitoring Database (IAMD) to assess long-term trends and cumulative effects associated with land-use and climate changes. Water-monitoring efforts included drilling four new groundwater-monitoring wells in the Green and New Fork River basins near the proposed Normally Pressured Lance Formation energy development, and continued data collection at established water-monitoring sites. Three additional wells were sampled as part of the Wyoming Groundwater Monitoring Network, bringing the total to 19 Network wells sampled in the WLCI region since 2010. Combined, these water-monitoring efforts can help to identify potential changes in water quality or levels that may result from land-use changes. Major terrestrial monitoring accomplishments included processing satellite imagery from 1985−2010 to develop a historical perspective of long-term vegetation changes, which can serve as a basis for monitoring current and future trends in sagebrush steppe. Such data are crucial tools for agencies tasked with sage-grouse management and conservation. The USGS WLCI Science Team also continued monitoring and testing methods for evaluating WLCI habitat treatments designed to promote aspen regeneration and enhance sage-grouse habitat, and to assess how those treatments influence invasive species distributions and ungulate herbivory. Highlights included analyzing field data collected to elucidate the relationships between sage-grouse habitat use and the proximity of energy infrastructure, and using new instruments to measure productivity responses of aspen woodlands to various factors. Numerous FY2014 accomplishments specifically addressed agency needs to manage and conserve Wyoming’s wildlife species of concern. A pygmy rabbit habitat model and Wyoming distribution map were completed to identify factors associated with rabbit habitat occupancy. Previous work on sage-grouse population dynamics was expanded to better understand the factors that drive long-term viability of sage-grouse populations and to develop a tool that helps to identify key factors limiting sage-grouse persistence in Wyoming. Field work and data analyses continued for elucidating the relationships between sagebrush songbird abundance and productivity, the intensity of energy development, and community dynamics of nest predators. For the mule deer study, mixed mountain shrublands important to migrating and wintering mule deer were mapped and delivered to WLCI partners. Additionally, the relationships between energy development and crucial winter habitat for mule deer were evaluated, and a new phase of work was implemented to better understand relationships between plant phenology and mule deer migration movements. Finally, initial analyses of data collected to evaluate fish-community composition in relation to habitat quality indicate that water quality, as measured by concentrations of hydrocarbons, water temperature, and others parameters, has been diminished in subwatersheds with higher levels of energy development. Overall, the outcomes and products of these wildlife studies contribute significantly to the information and tools needed for addressing effects of land-use changes on Wyoming’s species of concern. Finally, capabilities of the WLCI Web site and the USGS ScienceBase infrastructure were maintained and upgraded to help ensure access to and efficient use of all the WLCI data, products, assessment tools, and outreach materials that have been developed. Of particular note is the completion of three Web applications developed for mapping (1) the 1900−2008 progression of oil and gas development;(2) the predicted distributions of Wyoming’s Species of Greatest Conservation Need; and (3) the locations of coal and wind energy production, sage-grouse distribution and core management areas, and alternative routes for transmission lines within the WLCI region. Collectively, these applications tools provide WLCI planners and managers with powerful tools for better understanding the distributions of wildlife species and potential alternatives for energy development.

Wyoming↗

USGS2024

Use of Doppler velocity radars to monitor and predict debris and flood wave velocities and travel times in post-wildfire basins

The magnitude and timing of extreme events such as debris and floodflows (collectively referred to as floodflows) in post-wildfire basins are difficult to measure and are even more difficult to predict. To address this challenge, a sensor ensemble consisting of noncontact, ground-based (near-field), Doppler velocity (velocity) and pulsed (stage or gage height) radars, rain gages, and a redundant radio communication network was leveraged to monitor flood wave velocities, to validate travel times, and to compliment observations from NEXRAD weather radar. The sensor ensemble (DEbris and Floodflow Early warNing System, DEFENS) was deployed in Waldo Canyon, Pike National Forest, Colorado, USA, which was burned entirely (100 percent burned) by the Waldo Canyon fire during the summer of 2012 ( MTBS, 2020 ). Surface velocity, stage, and precipitation time series collected during the DEFENS deployment on 10 August 2015 were used to monitor and predict flood wave velocities and travel times as a function of stream discharge (discharge; streamflow). The 10 August 2015 event exhibited spatial and temporal variations in rainfall intensity and duration that resulted in a discharge equal to 5.01 cubic meters per second (m 3 /s). Discharge was estimated post-event using a slope-conveyance indirect discharge method and was verified using velocity radars and the probability concept algorithm. Mean flood wave velocities – represented by the kinematic celerity ( c k = 2.619 m e t e r s p e r s e c o n d , m / s ± 0.556 p e r c e n t "> 𝑐 𝑘 = 2.619 𝑚𝑒𝑡𝑒𝑟𝑠 𝑝𝑒𝑟 𝑠𝑒𝑐𝑜𝑛𝑑, m/s ± 0.556 𝑝𝑒𝑟𝑐𝑒𝑛𝑡) and dynamic celerity ( c d = 3.533 m / s ± 0.181 p e r c e n t a n d t h e i r u n c e r t a i n t i e s "> 𝑐 𝑑 = 3.533 m/s ± 0.181 𝑝𝑒𝑟𝑐𝑒𝑛𝑡) and their uncertainties were computed. L-moments were computed to establish probability density functions (PDFs) and associated statistics for each of the at-a-section hydraulic parameters to serve as a workflow for implementing alert networks in hydrologically similar basins that lack data. Measured flood wave velocities and travel times agreed well with predicted values. Absolute percent differences between predicted and measured flood wave velocities ranged from 1.6 percent to 49 percent and varied with water slope, hydraulic radius, and depth. The kinematic celerity was a better predictor for steep slopes and wide flood plains associated with the Upper Waldo and Middle Waldo radar streamgages; whereas, the dynamic celerity was a better surrogate for shallow slopes and incised channels such as the Lower Waldo radar streamgage. The method demonstrates the potential extensibility of a post-wildfire warning system by (1) leveraging multiple systems (i.e., weather radar, near-field velocity and stage radars, and rain gages) for accurate and timely warnings of debris and floodflows, (2) establishing an order of operations to site, install, and operate near-field radars and conventional rain gages to record floodflows, forecast travel times, and document geomorphic change in this basin and hydrologically similar basins that lack data, and (3) communicating data operationally with the Colorado Department of Transportation engineering staff, National Weather Service forecasters, and emergency managers.

Colorado↗

USGS2008

Spatial and temporal statistical analysis of bycatch data: Patterns of sea turtle bycatch in the North Atlantic

Loggerhead (Caretta caretta) and leatherback (Dermochelys coriacea) sea turtle distributions and movements in offshore waters of the western North Atlantic are not well understood despite continued efforts to monitor, survey, and observe them. Loggerhead and leatherback sea turtles are listed as endangered by the World Conservation Union, and thus anthropogenic mortality of these species, including fishing, is of elevated interest. This study quantifies spatial and temporal patterns of sea turtle bycatch distributions to identify potential processes influencing their locations. A Ripley's K function analysis was employed on the NOAA Fisheries Atlantic Pelagic Longline Observer Program data to determine spatial, temporal, and spatio-temporal patterns of sea turtle bycatch distributions within the pattern of the pelagic fishery distribution. Results indicate that loggerhead and leatherback sea turtle catch distributions change seasonally, with patterns of spatial clustering appearing from July through October. The results from the space-time analysis indicate that sea turtle catch distributions are related on a relatively fine scale (30-200 km and 1-5 days). The use of spatial and temporal point pattern analysis, particularly K function analysis, is a novel way to examine bycatch data and can be used to inform fishing practices such that fishing could still occur while minimizing sea turtle bycatch. ?? 2008 NRC.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2010

Predictions of turbidity due to enhanced sediment resuspension resulting from sea-level rise on a fringing Coral Reef: Evidence from Molokai, Hawaii

Accelerating sea-level rise associated with global climate change will affect sedimentary processes on coral reefs and other shoreline environments by increasing energy and sediment resuspension. On reefs, sedimentation is known to increase coral stress and bleaching as particles that settle on coral surfaces interfere with photosynthesis and feeding, and turbidity induced by suspended sediment reduces incident light levels. Using relationships developed from observations of wave orbital velocity, water-surface elevation, and suspended-sediment concentration on a fringing reef flat of Molokai, Hawaii, predictions of the average daily maximum in suspended-sediment concentration increase from ~11 mg/l to ~20 mg/l with 20 cm sea-level rise. The duration of time concentrations exceeds 10 mg/l increases from 9 to 37. An evaluation of the reduction of wave energy flux through breaking and frictional dissipation across the reef flat shows an increase of ~80 relative to the present will potentially reach the shoreline as sea level increases by 20 cm. Where the shoreline exists on low, flat terrain, the increased energy could cause significant erosion of the shoreline. Considering the sediment budget, the sediment flux is predicted to increase and removal of fine-grained sediment may be expedited on some fringing reefs, and sediment in storage on the inner reef could ultimately be reduced. However, increased shoreline erosion may add sediment and offset removal from the reef flat. The shifts in sediment availability and transport that will occur as result of a modest increase in sea level have wide application to fringing coral reefs elsewhere, as well as other shoreline environments. ?? 2010 the Coastal Education & Research Foundation (CERF).

Journal of Coastal Research↗

USGS2012

Estimated trichloroethene transformation rates due to naturally occurring biodegradation in a fractured-rock aquifer

Rates of trichloroethene (TCE) mass transformed by naturally occurring biodegradation processes in a fractured rock aquifer underlying a former Naval Air Warfare Center (NAWC) site in West Trenton, New Jersey, were estimated. The methodology included (1) dividing the site into eight elements of equal size and vertically integrating observed concentrations of two daughter products of TCE biodegradation– cis -dichloroethene ( cis -DCE) and chloride–using water chemistry data from a network of 88 observation wells; (2) summing the molar mass of cis -DCE, the first biodegradation product of TCE, to provide a probable underestimate of reductive biodegradation of TCE, (3) summing the molar mass of chloride, the final product of chlorinated ethene degradation, to provide a probable overestimate of overall biodegradation. Finally, lower and higher estimates of aquifer porosities and groundwater residence times were used to estimate a range of overall transformation rates. The highest TCE transformation rates estimated using this procedure for the combined overburden and bedrock aquifers was 945 kg/yr, and the lowest was 37 kg/yr. However, hydrologic considerations suggest that approximately 100 to 500 kg/yr is the probable range for overall TCE transformation rates in this system. Estimated rates of TCE transformation were much higher in shallow overburden sediments (approximately 100 to 500 kg/yr) than in the deeper bedrock aquifer (approximately 20 to 0.15 kg/yr), which reflects the higher porosity and higher contaminant mass present in the overburden. By way of comparison, pump-and-treat operations at the NAWC site are estimated to have removed between 1,073 and 1,565 kg/yr of TCE between 1996 and 2009.

New Jersey↗

USGS2016

Molecular-level evidence provided by ultrahigh resolution mass spectrometry for oil-derived doc in groundwater at Bemidji, Minnesota

Dissolved organic matter samples extracted from ground water at the USGS Bemidji oil spill site in Minnesota were investigated by ultrahigh resolution mass spectrometry. Principle component analysis (PCA) of the elemental composition assignments of the samples showed that the score plots for the contaminated sites were well separated from those for the uncontaminated sites. Additionally, spectra obtained from the same sampling site 7 and 19 years after the spill were grouped together in the score plot, strongly suggesting a steady state of contamination within the 12 year interval. The double bond equivalence (DBE) of O x class compounds was broader for the samples from the contaminated sites, because of the complex nature of oil and the consequent formation of compounds with saturated and/or aromatic structures from the oxygenated products of oil. In addition, O x class compounds with a relatively smaller number of x (x < 8; x = number of oxygen) and O x S 1 class compounds were more abundant in the samples from the contaminated sites, because of the lower oxygen and higher sulfur contents of the oil compared to humic substances. The molecular-level signatures presented here can be a fundamental basis for in-depth analysis of oil contamination.

Minnesota↗

USGS2003

Analysis of aquifer mineralization by paleodrainage channels

Mineralization of groundwater resources is a problem in south-central Kansas, due to the penetration of saline water from Permian bedrock formations into the overlying alluvial aquifer. One of the mechanisms involved in the mineralization involves small bedrock features of high permeability located in places occupied by streams and rivers in past geological eras. These geological features are termed 'paleodrainage channels'. The permeability of the overlying aquifer can be significantly smaller than that of the channel fill material. The comparatively fast migration of saline water through these channels of high permeability is associated with the transfer of minerals into the overlying freshwater aquifer. This study applies a set of boundary layer approaches to quantify the process of mineral transfer from the channels into the aquifer. The methods used in the present study provide quick estimation and evaluation of the dilution of the channel flow, as well as mineral concentration profile changes in the mineralized zone created in the overlying aquifer. More generally, the method can also be useful for the analysis and evaluation of various types of groundwater contamination in heterogeneous aquifers. The application of the method is exemplified by a complete set of calculations characterizing the possible mineralization process at a specific channel in south central Kansas. Sensitivity analyses are performed and provide information about the importance of the various parameters that affect the mineralization process. Some possible scenarios for the aquifer mineralization phenomena are described and evaluated. It is shown that the channel mineralization may create either several stream tubes of the aquifer with high mineral concentration, or many stream tubes mineralized to a lesser extent. Characteristics of these two patterns of aquifer mineralization are quantified and discussed. ?? 2003 Published by Elsevier Science B.V.

Journal of Hydrology↗

USGS2008

Prominent pancreatic endocrinopathy and altered control of food intake disrupt energy homeostasis in prion diseases

Prion diseases are fatal neurodegenerative diseases that can induce endocrinopathies. The basis of altered endocrine function in prion diseases is not well understood, and the purpose of this study was to investigate the spatiotemporal relationship between energy homeostasis and prion infection in hamsters inoculated with either the 139H strain of scrapie agent, which induces preclinical weight gain, or the HY strain of transmissible mink encephalopathy (TME), which induces clinical weight loss. Temporal changes in body weight, feed, and water intake were measured as well as both non-fasted and fasted concentrations of serum glucose, insulin, glucagon, ??-ketones, and leptin. In 139H scrapie-infected hamsters, polydipsia, hyperphagia, non-fasted hyperinsulinemia with hyperglycemia, and fasted hyperleptinemia were found at preclinical stages and are consistent with an anabolic syndrome that has similarities to type II diabetes mellitus and/or metabolic syndrome X. In HY TME-infected hamsters, hypodipsia, hypersecretion of glucagon (in both non-fasted and fasted states), increased fasted ??-ketones, fasted hypoglycemia, and suppressed non-fasted leptin concentrations were found while feed intake was normal. These findings suggest a severe catabolic syndrome in HY TME infection mediated by chronic increases in glucagon secretion. In both models, alterations of pancreatic endocrine function were not associated with PrPSc deposition in the pancreas. The results indicate that prominent endocrinopathy underlies alterations in body weight, pancreatic endocrine function, and intake of food. The prion-induced alterations of energy homeostasis in 139H scrapie- or HY TME-infected hamsters could occur within areas of the hypothalamus that control food satiety and/or within autonomic centers that provide neural outflow to the pancreas. ?? 2008 Society for Endocrinology.

Journal of Endocrinology↗

USGS2019

Analysis and visualization of coastal ocean model data in the cloud

The traditional flow of coastal ocean model data is from High Performance Computing (HPC) centers to the local desktop, or to a file server where just the data needed can be extracted via services such as OPeNDAP. Analysis and visualization is then conducted using local hardware and software. This requires moving large amounts of data across the internet as well as acquiring and maintaining local hardware, software and support personnel. Further, as data sets increase in size, the traditional workflow may not be scalable. Alternatively, recent advances make it possible to move data from HPC to the Cloud and perform interactive, scalable, data-proximate analysis and visualization, with simply a web browser user interface. We use the framework advanced by the NSF-funded Pangeo project, a free, open-source Python system which provides multi-user login via JupyterHub and parallel analysis via Dask, both running in Docker containers orchestrated by Kubernetes. Data is stored in the Zarr format, a Cloud-friendly ndarray format that allows performant extraction of data by anyone without relying on data services like OPeNDAP. Interactive visual exploration of data on massive model grids is made possible by new tools in the Python PyViz ecosystem, which can render maps at screen resolution, dynamically updating on pan and zoom operations. Two example are given: (1) calculating the maximum water level at each grid cell from a 53GB, 720 time step, 9 million node triangular mesh ADCIRC simulation of Hurricane Ike; (2) creating a dashboard for visualizing data from the curvilinear orthogonal COAWST/ROMS forecast model.

Journal of Marine Science and Engineering↗