SEARCH · USGS Science

Results for “Journal of Ecology”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

SourceResearch connectionFrom yearThrough year

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 703 records · Page 39Linked to original sources

USGS2014

Pink spot, white spot: the pineal skylight of the leatherback turtle ( Dermochelys coriacea Vandelli 1761) skull and its possible role in the phenology of feeding migrations

Leatherback turtles, Dermochelys coriacea , which have an irregular pink area on the crown of the head known as the pineal or ‘pink spot’, forage upon jellyfish in cool temperate waters along the western and eastern margins of the North Atlantic during the summer. Our study showed that the skeletal structures underlying the pink spot in juvenile and adult turtles are compatible with the idea of a pineal dosimeter function that would support recognition of environmental light stimuli. We interrogated an extensive turtle sightings database to elucidate the phenology of leatherback foraging during summer months around Great Britain and Ireland and compared the sightings with historical data for sea surface temperatures and day lengths to assess whether sea surface temperature or light periodicity/levels were likely abiotic triggers prompting foraging turtles to turn south and leave their feeding grounds at the end of the summer. We found that sea temperature was too variable and slow changing in the study area to be useful as a trigger and suggest that shortening of day lengths as the late summer equilux is approached provides a credible phenological cue, acting via the pineal, for leatherbacks to leave their foraging areas whether they are feeding close to Nova Scotia or Great Britain and Ireland.

Journal of Experimental Marine Biology and Ecology↗

USGS2015

A comparison between boat-based and diver-based methods for quantifying coral bleaching

Recent increases in both the frequency and severity of coral bleaching events have spurred numerous surveys to quantify the immediate impacts and monitor the subsequent community response. Most of these efforts utilize conventional diver-based methods, which are inherently time-consuming, expensive, and limited in spatial scope unless they deploy large teams of scientifically-trained divers. In this study, we evaluated the effectiveness of the Along-Track Reef Imaging System (ATRIS), an automated image-acquisition technology, for assessing a moderate bleaching event that occurred in the summer of 2011 in the Florida Keys. More than 100,000 images were collected over 2.7 km of transects spanning four patch reefs in a 3-h period. In contrast, divers completed 18, 10-m long transects at nine patch reefs over a 5-day period. Corals were assigned to one of four categories: not bleached, pale, partially bleached, and bleached. The prevalence of bleaching estimated by ATRIS was comparable to the results obtained by divers, but only for corals > 41 cm in size. The coral size-threshold computed for ATRIS in this study was constrained by prevailing environmental conditions (turbidity and sea state) and, consequently, needs to be determined on a study-by-study basis. Both ATRIS and diver-based methods have innate strengths and weaknesses that must be weighed with respect to project goals.

Florida↗

USGS2016

The effects of large beach debris on nesting sea turtles

A field experiment was conducted to understand the effects of large beach debris on sea turtle nesting behavior as well as the effectiveness of large debris removal for habitat restoration. Large natural and anthropogenic debris were removed from one of three sections of a sea turtle nesting beach and distributions of nests and false crawls (non-nesting crawls) in pre- (2011–2012) and post- (2013–2014) removal years in the three sections were compared. The number of nests increased 200% and the number of false crawls increased 55% in the experimental section, whereas a corresponding increase in number of nests and false crawls was not observed in the other two sections where debris removal was not conducted. The proportion of nest and false crawl abundance in all three beach sections was significantly different between pre- and post-removal years. The nesting success, the percent of successful nests in total nesting attempts (number of nests + false crawls), also increased from 24% to 38%; however the magnitude of the increase was comparably small because both the number of nests and false crawls increased, and thus the proportion of the nesting success in the experimental beach in pre- and post-removal years was not significantly different. The substantial increase in sea turtle nesting activities after the removal of large debris indicates that large debris may have an adverse impact on sea turtle nesting behavior. Removal of large debris could be an effective restoration strategy to improve sea turtle nesting.

Journal of Experimental Marine Biology and Ecology↗

USGS2020

Spatial and temporal diving behavior of non-breeding common murres during two summers of contrasting ocean conditions

Successful foraging of marine predators depends on environmental conditions, which also influence prey availability. Neutral or negative El Niño Southern Oscillation and Pacific Decadal Oscillation ocean conditions during the summer of 2013 and strongly positive conditions during the summer of 2015 in the northern California Current System provided a case study to evaluate a marine predator's response to anomalously warm conditions. We used satellite transmitters with saltwater switches to track movements and estimate dive behavior among non-breeding common murres (Uria aalge) off Oregon prior to and during a marine heatwave. We quantified differences in space-use between years, applied linear mixed models to determine environmental influences (e.g. sea surface temperature, surface salinity, chlorophyll a, ocean depth, and calendar date) on dive frequency and dive duration, and contrasted dive activity between time of day, year, and sexes. The majority of birds dispersed away from capture locations, which were situated near the southern range limit of their population. In both years, murres used the Salish Sea and the Columbia River plume; however, murres spent more time foraging in the Columbia River plume and in continental slope habitat during the marine heatwave of 2015. During 2015, dive frequency was reduced, and dive durations were almost twice as long during daytime indicating deeper or more dispersed prey. Increased dive frequency was positively associated with temperature, chlorophyll a, and crepuscular periods. Cluster analysis of dive activity and the top-ranked predictive dive duration model revealed associations between longer-duration dives and decreased dive frequency, marine slope habitat, and cooler ocean temperatures. Murres were relatively inactive throughout the night and we found no sex differences in dive activity. Changes in common murre foraging tactics were associated with ocean warming and revealed selectivity in spatial and temporal use of foraging habitats. Productive marine features including the Columbia River plume provided refuge for murres during apparently poor ocean conditions associated with the marine heatwave. Identifying refuge areas used by highly mobile species experiencing varying ocean conditions is critical for adaptive marine spatial planning that can accommodate a changing ocean climate.

California↗

USGS2021

Environmental factors predicting the orientation of sea turtle hatchlings on a naturally lighted beach: A baseline for light-management goals

On sea turtle nesting beaches, artificial lighting associated with human development interferes with hatchling orientation from nest to sea. Although hatchling disorientation has been documented for many beaches, data that managers can use in understanding, predicting, and managing the issue are of limited detail. The present study provides baseline hatchling orientation data that can be compared to those from beaches with artificial lighting to prioritize light-management efforts there. In 2014, the precision of hatchling orientation was quantified for 87 nests on a naturally lighted beach that had little to no artificial lighting. Precision of hatchling orientation was regressed against seven environmental variables: beach slope, distance from nest to dune, dune height, apparent dune silhouette height relative to nest site, moon illumination percentage, cloud cover percentage, and relative humidity. Results favored a regression model that included distance from nest to dune, with shorter distances from the dune predicting a narrower angular range (i.e., greater precision) of hatchling orientation. The study confirmed findings of an earlier laboratory experiment that highlighted the importance to accurate hatchling orientation of a dark silhouette (dune) on the side of the nest site opposite the ocean side. Reducing artificial light and promoting the planting of pioneer plants that assist dune formation can increase hatchling survival.

Florida↗

USGS2022

Temperature-based modeling of incubation period to protect loggerhead hatchlings on an urban beach in Northwest Florida

Sea turtle hatchlings face many natural and anthropogenic threats during their short journey to the water after emerging from nests. Reducing hatchling mortality is critical to population recovery of imperiled sea turtle species; however, protecting hatchlings is particularly challenging on beaches degraded by human development and disturbances, including artificial lighting. Managers need practical methods to reduce hatchling mortality without harming their natural behavior or development. To address this need, we describe an approach to reduce mortality of loggerhead hatchlings that relies on prediction of clutch incubation length and knowledge of hatchling emergence patterns. We developed models to predict incubation length utilizing sand temperature and nest depth data from 133 loggerhead nests laid on an urban beach in Northwest Florida from 2013 to 2020. Incubation length was predicted to within 2.2 days using mean sand temperatures measured just outside of the clutch. Predicted accuracy improved to 1.9 days using a 2-parameter model incorporating sand temperature and measured depth to the topmost eggs. Hatchlings emerged almost exclusively at night in a single large group with no evidence of asynchronous emergences. Emergence times were skewed toward the early evening, in contrast to loggerhead nests on the Florida Atlantic coast which tend to hatch near midnight. Using these prediction tools, monitoring efforts could be focused on days and times of expected emergence to enable protection of hatchlings emerging naturally from nests left in situ. The method used here, while not a substitute for recovery of degraded nesting habitat, provides a way to protect hatchlings that avoids disturbing the eggs with instruments or restraining the hatchlings with cages or screens.

Florida↗

USGS2023

Differential hypoxia tolerance of eastern oysters from the northern Gulf of Mexico at elevated temperature

Increasing prevalence of hypoxia in shallow waters of U.S. Gulf of Mexico (GoM) estuaries can pose a serious threat to eastern oysters ( Crassostrea virginica ). Their tolerance to hypoxia, however, is not well characterized, especially at elevated temperatures (>30 °C) typical of GoM estuaries in summer. Moreover, it is unknown whether differences in hypoxia tolerance exist between GoM oyster populations growing in estuaries differing in local environmental conditions. Wild oyster broodstocks were collected from four estuarine sites in Texas (Packery Channel, PC and Aransas Bay, AB) and Louisiana (Calcasieu Lake, CL and Vermilion Bay, VB) and their adult progenies (F1) were tested (Study 1) under continuous hypoxia (<2.0 mg O 2 L −1 ) at 32 °C. Significant differences in hypoxia tolerance were found between F1 populations with calculated median lethal time (LT 50 ) ranging from 3.9 to 12.5 days. PC and CL oysters were the most and least tolerant populations, respectively. The study was repeated twice more (Studies 2 and 3) using PC and CL oysters, and their responses at the organismic, cellular, and biochemical levels were investigated. Valve movement was monitored, and oysters were sampled to measure hemocyte density, plasma protein, calcium and glutathione concentrations, and digestive gland alanine and succinate concentrations after either 3–5 days (Study 2) or 1–3 days (Study 3) of hypoxia exposure. From the onset of hypoxia until their death, oysters stayed opened 13–32% of the time compared to 53–64% under normoxia, but no differences between populations were detected under hypoxia. PC oyster but not CL oyster plasma glutathione concentrations increased significantly in both studies. Under longer (3–5 days) hypoxia exposure, plasma calcium and glutathione concentrations of PC oysters were significantly higher than CL oysters. These results suggest PC oysters were better able to protect tissues against acidosis and oxidative damage during hypoxia and high temperature stress than CL oysters. Overall, our results indicate that oyster populations originating from the GoM vary in their response to hypoxia and high temperature stress and possess differential tolerance.

Alabama, Louisiana, Mississippi, Texas↗

USGS2024

Does the extent of glacial cover across watersheds and discharge periods affect dietary resource use of nearshore fishes in the Northern Gulf of Alaska?

Northern high-latitude glaciers impact nearshore marine ecosystems through the discharge of cold and fresh waters, including nutrients and organic matter. Fishes are important integrators of ecosystem processes and hold key positions in the transfer of energy to higher trophic positions in such systems. This study used a natural gradient in space and time, including watershed glacial cover (0–60%) of five adjacent estuaries and three sequential discharge periods (pre-peak, peak, post-peak) in the northern Gulf of Alaska (Kachemak Bay) to test whether differences in glacial cover of watersheds upstream of estuaries affect dietary resource use of nearshore fishes. Dietary resource use was assessed using stomach content and stable carbon and nitrogen isotope analyses to determine fish diet composition and trophic niche width. Crescent gunnel ( Pholis laeta ), a mostly sedentary species, was our focal species for comparisons across estuaries and discharge periods. Discharge period had a greater influence on diet composition and trophic niche width of crescent gunnels than watershed glacial coverage. Niche width of crescent gunnel was larger during the post-peak discharge period compared to pre-peak and peak periods, coincident with a shift in prey spectrum. However, watershed glacial cover was not a suitable predictor of niche width of crescent gunnel. Trophic resource use was also considered along this glacial cover gradient for two other fish species, Pacific staghorn sculpin ( Leptocottus armatus ) and starry flounder ( Platichthys stellatus ), but within the post-peak discharge period only. These species exploited a larger prey base compared to crescent gunnel, likely due to their greater mobility. Similar to crescent gunnel, there were no relationships in trophic niche width associated with watershed glacial coverage for these other species during the post-peak discharge period. Instead, trophic resource use of these three nearshore fish species was influenced by a more complex set of dynamic environmental variables (salinity, temperature, turbidity, and discharge), as well as static watershed characteristics, especially vegetation cover. Such drivers can act through changes in metabolic rates, modulating foraging strategies and trophic connectivity, as well as terrestrial nutrient delivery to support estuarine production. The environmental conditions associated with the glacially influenced estuaries during our study period (2020−2021) seemed within a range that allowed nearshore fishes to maintain energy pathways and prey bases across these estuaries, but it is unknown how these estuarine food webs may be influenced in years of extreme conditions such as during heat waves, droughts, or floods.

Alaska↗

USGS1998

Habitat characteristics affecting fish assemblages on a Hawaiian coral reef

Habitat characteristics of a reef were examined as potential influences on fish assemblage structure, using underwater visual census to estimate numbers and biomass of all fishes visible on 42 benthic transects and making quantitative measurements of 13 variables of the corresponding physical habitat and sessile biota. Fish assemblages in the diverse set of benthic habitats were grouped by detrended correspondence analysis, and associated with six major habitat types. Statistical differences were shown between a number of these habitat types for various ensemble variables of the fish assemblages. Overall, both for complete assemblages and for component major trophic and mobility guilds, these variables tended to have higher values where reef substratum was more structurally or topographically complex, and closer to reef edges. When study sites were separately divided into five depth strata, the deeper strata tended to have statistically higher values of ensemble variables for the fish assemblages. Patterns with depth varied among the various trophic and mobility guilds. Multiple linear regression models indicated that for the complete assemblages and for most trophic and mobility guilds, a large part of the variability for most ensemble variables was explained by measures of holes in the substratum, with important contributions from measured substratum rugosity and depth. A strong linear relationship found by regression of mean fish length on mean volume of holes in the reef surface emphasized the importance of shelter for fish assemblages. Results of this study may have practical applications in designing reserve areas as well as theoretical value in helping to explain the organization of reef fish assemblages.

Journal of Experimental Marine Biology and Ecology↗

USGS1999

Changes in proximate composition and somatic energy content for Pacific sand lance ( Ammodytes hexapterus ) from Kachemak Bay, Alaska relative to maturity and season

Mean dry-weight energy values of adult Pacific sand lance ( Ammodytes hexapterus ) peaked in spring and early summer (20.91 kJg −1 for males, 21.08 kJg −1 for females), then declined by about 25% during late summer and fall (15.91 kJg −1 for males, 15.74 kJg −1 for females). Late summer declines in energy density paralleled gonadal development. Gender differences in energy density (males<females) were only apparent from August to October. Adult sand lance spawn in October, entering the winter with close to their minimum whole body energy content. Juvenile sand lance exhibited a relatively constant protein to lipid ratio until they reached 80 mm fork length. Thereafter, relative proportions of protein remained constant while lipid proportions increased significantly. Dry weight energy densities of juveniles increased from a minimum 16.67 kJg −1 to a maximum of 19.68 kJg −1 , and (per g) are higher than adults in late summer. The seasonal food value of adult sand lance to predators varies markedly, but maximum energetic value coincides with important feeding periods for marine mammals, fish, and seabirds.

Alaska↗

USGS2003

Species area relationships in mediterranean-climate plant communities

Aim To determine the best-fit model of species–area relationships for Mediterranean-type plant communities and evaluate how community structure affects these species–area models. Location Data were collected from California shrublands and woodlands and compared with literature reports for other Mediterranean-climate regions. Methods The number of species was recorded from 1, 100 and 1000 m 2 nested plots. Best fit to the power model or exponential model was determined by comparing adjusted r 2 values from the least squares regression, pattern of residuals, homoscedasticity across scales, and semi-log slopes at 1–100 m 2 and 100–1000 m 2 . Dominance–diversity curves were tested for fit to the lognormal model, MacArthur's broken stick model, and the geometric and harmonic series. Results Early successional Western Australia and California shrublands represented the extremes and provide an interesting contrast as the exponential model was the best fit for the former, and the power model for the latter, despite similar total species richness. We hypothesize that structural differences in these communities account for the different species–area curves and are tied to patterns of dominance, equitability and life form distribution. Dominance–diversity relationships for Western Australian heathlands exhibited a close fit to MacArthur's broken stick model, indicating more equitable distribution of species. In contrast, Californian shrublands, both postfire and mature stands, were best fit by the geometric model indicating strong dominance and many minor subordinate species. These regions differ in life form distribution, with annuals being a major component of diversity in early successional Californian shrublands although they are largely lacking in mature stands. Both young and old Australian heathlands are dominated by perennials, and annuals are largely absent. Inherent in all of these ecosystems is cyclical disequilibrium caused by periodic fires. The potential for community reassembly is greater in Californian shrublands where only a quarter of the flora resprout, whereas three quarters resprout in Australian heathlands. Other Californian vegetation types sampled include coniferous forests, oak savannas and desert scrub, and demonstrate that different community structures may lead to a similar species–area relationship. Dominance–diversity relationships for coniferous forests closely follow a geometric model whereas associated oak savannas show a close fit to the lognormal model. However, for both communities, species–area curves fit a power model. The primary driver appears to be the presence of annuals. Desert scrub communities illustrate dramatic changes in both species diversity and dominance–diversity relationships in high and low rainfall years, because of the disappearance of annuals in drought years. Main conclusions Species–area curves for immature shrublands in California and the majority of Mediterranean plant communities fit a power function model. Exceptions that fit the exponential model are not because of sampling error or scaling effects, rather structural differences in these communities provide plausible explanations. The exponential species–area model may arise in more than one way. In the highly diverse Australian heathlands it results from a rapid increase in species richness at small scales. In mature California shrublands it results from very depauperate richness at the community scale. In both instances the exponential model is tied to a preponderance of perennials and paucity of annuals. For communities fit by a power model, coefficients z and log c exhibit a number of significant correlations with other diversity parameters, suggesting that they have some predictive value in ecological communities.

Journal of Biogeography↗

USGS2009

Riverine based eco-tourism: Trinity River non-market benefits estimates

California's Central Valley Project (CVP) was approved by voters in a statewide referendum in 1933. CVP referendum approval initiated funding for construction of important water development projects that had far reaching effects on regional water supplies. The construction of Trinity Dam in 1963 and the subsequent transbasin diversion of Trinity River flow was one of several CVP projects that had noteworthy adverse environmental and regional economic impacts. The Trinity River is the largest tributary of the Klamath River, and has its headwaters in the Trinity Alps of north-central California. After the construction of Trinity Dam in 1963, 90% of the Trinity River flow at Lewiston was moved to the Sacramento River via the Clear Creek Tunnel. Before 1963, the Trinity River was a major recreation resource of Northern California. The loss of stream flow has had a marked adverse impact on Trinity River-related recreation activities and the size and robustness of Trinity River salmon, steelhead, shad, and sturgeon runs. Trinity River water produces hydropower during its transit via Bureau of Reclamation canals and pumps to the northern San Joaquin Valley, where it is used for irrigated agriculture. The benefits provided by Trinity River instream flow-related environmental amenities were estimated with the travel cost method (TCM). Trinity River non-market benefits are about $406 million per annum, while the social cost of sending water down the Trinity River ranges from $17 to $42 million per annum, depending on the exact flow. We also discuss the relative magnitude of Trinity River survey data contingent value method (CVM) benefits estimates.

International Journal of Sustainable Development a↗

USGS2011

Using data from an encounter sampler to model fish dispersal

A method to estimate speed of free-ranging fishes using a passive sampling device is described and illustrated with data from the Everglades, U.S.A. Catch per unit effort (CPUE) from minnow traps embedded in drift fences was treated as an encounter rate and used to estimate speed, when combined with an independent estimate of density obtained by use of throw traps that enclose 1 m 2 of marsh habitat. Underwater video was used to evaluate capture efficiency and species-specific bias of minnow traps and two sampling studies were used to estimate trap saturation and diel-movement patterns; these results were used to optimize sampling and derive correction factors to adjust species-specific encounter rates for bias and capture efficiency. Sailfin mollies Poecilia latipinna displayed a high frequency of escape from traps, whereas eastern mosquitofish Gambusia holbrooki were most likely to avoid a trap once they encountered it; dollar sunfish Lepomis marginatus were least likely to avoid the trap once they encountered it or to escape once they were captured. Length of sampling and time of day affected CPUE; fishes generally had a very low retention rate over a 24 h sample time and only the Everglades pygmy sunfish Elassoma evergladei were commonly captured at night. Dispersal speed of fishes in the Florida Everglades, U.S.A., was shown to vary seasonally and among species, ranging from 0.05 to 0.15 m s -1 for small poeciliids and fundulids to 0.1 to 1.8 m s -1 for L. marginatus . Speed was generally highest late in the wet season and lowest in the dry season, possibly tied to dispersal behaviours linked to finding and remaining in dry-season refuges. These speed estimates can be used to estimate the diffusive movement rate, which is commonly employed in spatial ecological models.

Florida↗

USGS1997

Analysis of habitat selection studies with multiple patches within cover types

Current statistical methods are inadequate for evaluation of the relation between spatial pattern of the landscape and observed patterns of habitat use by individuals or populations. For example, traditional habitat selection analysis methods do not use information about the size and distribution of the several patches of each cover type that may exist within the study area. Statistical tests are presented for hypotheses about disproportional use of cover types and patches within cover types. These tests require that use of individual patches is recorded, as well as the size of individual patches. Different designs are considered in which there are (1) single or multiple samples of use, and (2) equal or unequal habitat availability. Formulas for calculating Type II statistical errors of the tests are presented and Monte Carlo simulation is used to assess the accuracy of the formulas and to check the Type I error rates of the proposed test statistics. With adequate sample sizes, Type II error formulas can be a useful tool for planning of habitat selection studies. An example analysis is presented of a hypothetical study of habitat selection by ring-necked pheasants ( Phasianus colchicus ) in a Midwestern landscape. The proposed tests also represent a contribution toward bringing together concepts of landscape ecology and wildlife habitat selection.

Journal of Wildlife Management↗

USGS2012

A review of the key genetic tools to assist imperiled species conservation: analyzing West Indian manatee populations

Managers faced with decisions on threatened and endangered wildlife populations often are lacking detailed information about the species of concern. Integration of genetic applications will provide management teams with a better ability to assess and monitor recovery efforts on imperiled species. The field of molecular biology continues to progress rapidly and many tools are currently available. Presently, little guidance is available to assist researchers and managers with the appropriate selection of genetic tools to study the status of wild manatee populations. We discuss several genetic tools currently employed in the application of conservation genetics, and address the utility of using these tools to determine population status to aid in conservation efforts. As an example, special emphasis is focused on the endangered West Indian manatee (Order Sirenia). All four extant species of sirenians are imperiled throughout their range, predominately due to anthropogenic sources; therefore, the need for genetic information on their population status is direly needed.

Journal of Marine Animals and Their Ecology↗

USGS2012

Biomedical health assessments of the Florida manatee in Crystal River - providing opportunities for training during the capture, handling, and processing of this endangered aquatic mammal

Federal and state researchers have been involved in manatee (Trichechus manatus) biomedical health assessment programs for a couple of decades. These benchmark studies have provided a foundation for the development of consistent capture, handling, and processing techniques and protocols. Biologists have implemented training and encouraged multi-agency participation whenever possible to ensure reliable data acquisition, recording, sample collection, publication integrity, and meeting rigorous archival standards. Under a U.S. Fish and Wildlife Service wildlife research permit granted to the U.S. Geological Survey (USGS) Sirenia Project, federal biologists and collaborators are allowed to conduct research studies on wild and captive manatees detailing various aspects of their biology. Therefore, researchers with the project have been collaborating on numerous studies over the last several years. One extensive study, initiated in 2006 has focused on health and fitness of the winter manatee population located in Crystal River, Florida. During those health assessments, capture, handling, and work-up training has been afforded to many of the participants. That study has successfully captured and handled 123 manatees. The data gathered have provided baseline information on manatee health, reproductive status, and nutritional condition. This research initiative addresses concerns and priorities outlined in the Florida Manatee Recovery Plan. The assessment teams strive to continue this collaborative effort to help advance our understanding of health-related issues confronting manatees throughout their range and interlacing these findings with surrogate species concepts.

Florida↗

USGS2008

Stress tolerance in plants via habitat-adapted symbiosis

We demonstrate that native grass species from coastal and geothermal habitats require symbiotic fungal endophytes for salt and heat tolerance, respectively. Symbiotically conferred stress tolerance is a habitat-specific phenomenon with geothermal endophytes conferring heat but not salt tolerance, and coastal endophytes conferring salt but not heat tolerance. The same fungal species isolated from plants in habitats devoid of salt or heat stress did not confer these stress tolerances. Moreover, fungal endophytes from agricultural crops conferred disease resistance and not salt or heat tolerance. We define habitat-specific, symbiotically-conferred stress tolerance as habitat-adapted symbiosis and hypothesize that it is responsible for the establishment of plants in high-stress habitats. The agricultural, coastal and geothermal plant endophytes also colonized tomato (a model eudicot) and conferred disease, salt and heat tolerance, respectively. In addition, the coastal plant endophyte colonized rice (a model monocot) and conferred salt tolerance. These endophytes have a broad host range encompassing both monocots and eudicots. Interestingly, the endophytes also conferred drought tolerance to plants regardless of the habitat of origin. Abiotic stress tolerance correlated either with a decrease in water consumption or reactive oxygen sensitivity/generation but not to increased osmolyte production. The ability of fungal endophytes to confer stress tolerance to plants may provide a novel strategy for mitigating the impacts of global climate change on agricultural and native plant communities.The ISME Journal (2008) 2, 404-416; doi:10.1038/ismej.2007.106; published online 7 February 2008. ?? 2008 International Society for Microbial Ecology All rights reserved.

ISME Journal↗

USGS2010

Understanding behavioral responses of fish to pheromones in natural freshwater environments

There is an abundance of experimental studies and reviews that describe odorant-mediated behaviors of fish in laboratory microcosms, but research in natural field conditions has received considerably less attention. Fish pheromone studies in laboratory settings can be highly productive and allow for controlled experimental designs; however, laboratory tanks and flumes often cannot replicate all the physical, physiological and social contexts associated with natural environments. Field experiments can be a critical step in affirming and enhancing understanding of laboratory discoveries and often implicate the ecological significance of pheromones employed by fishes. When findings from laboratory experiments have been further tested in field environments, often different and sometimes contradictory conclusions are found. Examples include studies of sea lamprey (Petromyzon marinus) mating pheromones and fish alarm substances. Here, we review field research conducted on fish pheromones and alarm substances, highlighting the following topics: (1) contradictory results obtained in laboratory and field experiments, (2) how environmental context and physiological status influences behavior, (3) challenges and constraints of aquatic field research and (4) innovative techniques and experimental designs that advance understanding of fish chemical ecology through field research.

Journal of Comparative Physiology A↗