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At least 703 records · Page 39Linked to original sources
USGS2025

Multi-species telemetry quantifies current and future efficacy of a remote marine protected area

Large-scale marine protected areas (LSMPAs; > 1000 km 2 ) provide important refuge for large mobile species, but most do not encompass species' ranges. To better understand current and future LSMPA value, we concurrently tracked nine species (seabirds, cetaceans, pelagic fishes, manta rays, reef sharks) at Palmyra Atoll and Kingman Reef (PKMPA) in the U.S. Pacific Islands Heritage Marine National Monument. PKMPA and the U.S. Exclusive Economic Zone encompassed 39% and 54% of species movements ( n = 83; tracking duration range: 0.5–350 days), respectively. Species distribution models indicated 73% of PKMPA contained highly suitable habitat. Under two projected future scenarios (SSP 1–2.6, “Sustainability”; SSP 3–7.0, “Rocky Road”), strong sea surface temperature gradients initially could cause abrupt oceanic change resulting in predicted habitat loss in 2040–2050, followed by an equilibrium response and regained habitat by 2090–2100. Current and future suitable habitats were available adjacent to PKMPA, suggesting that increased MPA size could enhance protection. Our three-tiered approach combining animal tracking with publicly available remote sensing data and future projected environmental scenarios could be used to design, study, and monitor protected areas throughout the world. Holistic approaches that encompass diverse species and habitat use can enhance assessments of protected area designs. Animal telemetry and remote sensing may be helpful for ascertaining the extent to which other MPAs protect large mobile species in the future.

Kingman Reef, Palmyra Atoll, U.S. Pacific Islands ↗
USGS2018

Evaluation of targeted and untargeted effects-based monitoring tools to assess impacts of contaminants of emerging concern on fish in the South Platte River, CO

Rivers in the arid Western United States face increasing influences from anthropogenic contaminants due to population growth, urbanization, and drought. To better understand and more effectively track the impacts of these contaminants, biologically-based monitoring tools are increasingly being used to complement routine chemical monitoring. This study was initiated to assess the ability of both targeted and untargeted biologically-based monitoring tools to discriminate impacts of two adjacent wastewater treatment plants (WWTPs) on Colorado's South Platte River. A cell-based estrogen assay ( in vitro , targeted) determined that water samples collected downstream of the larger of the two WWTPs displayed considerable estrogenic activity in its two separate effluent streams. Hepatic vitellogenin mRNA expression ( in vivo , targeted) and NMR-based metabolomic analyses ( in vivo , untargeted) from caged male fathead minnows also suggested estrogenic activity downstream of the larger WWTP, but detected significant differences in responses from its two effluent streams. The metabolomic results suggested that these differences were associated with oxidative stress levels. Finally, partial least squares regression was used to explore linkages between the metabolomics responses and the chemical contaminants that were detected at the sites. This analysis, along with univariate statistical approaches, identified significant covariance between the biological endpoints and estrone concentrations, suggesting the importance of this contaminant and recommending increased focus on its presence in the environment. These results underscore the benefits of a combined targeted and untargeted biologically-based monitoring strategy when used alongside contaminant monitoring to more effectively assess ecological impacts of exposures to complex mixtures in surface waters.

Colorado↗
USGS2020

Assessing native fish restoration potential in Catoctin Mountain Park

Biological conservation is a fundamental purpose of the National Park system, and Catoctin Mountain Park (CATO) supports high-quality habitat for native fishes in the headwaters of the Chesapeake Bay watershed in eastern North America. However, native Blue Ridge sculpin ( Cottus caeruleomentum ) have been extirpated in Big Hunting Creek above Cunningham Falls in CATO. Prior research indicates that infection by the fungal-like protist Dermocystidium is a likely cause for the extirpation, but elevated stream temperatures also have been observed in the study area, and it remains unknown whether thermal stress may exacerbate infections or otherwise limit habitat suitability for fishes in CATO. The purpose of this study was to quantify spatial variation in summer stream temperatures and to evaluate the effects of temperature on sculpin growth rates and susceptibility to Dermocystidium infection. We used observational and experimental methods to address these objectives. First, we deployed stream temperature gages at 10 sites throughout the study area to assess hourly and daily temperatures during the summer of 2019. Second, we conducted an in situ fish enclosure experiment at five of the temperature sites to assess fish growth and susceptibility to Dermocystidium infection over a 45-day exposure period. For this experiment we collected sculpin from a stream in CATO that supports a robust population of Blue Ridge sculpin (Owens Creek) and held them in quarantine for 50 days in the Experimental Stream Laboratory at the U.S. Geological Survey (USGS) Leetown Science Center. Pre-exposure histopathology confirmed the absence of Dermocystidium infection prior to the introduction of fish into experimental enclosures. We found that stream temperatures were warmer where sculpin have been extirpated than elsewhere in CATO where sculpin persist. However, the fish enclosure experiment revealed a positive effect of temperature on fish growth, suggesting that increased food availability and foraging rates compensated for increased metabolic demands in the warmest sites. Moreover, fish held in enclosures did not develop Dermocystidium infection. Our results therefore suggest that current environmental conditions in upper Big Hunting Creek may be suitable for Blue Ridge sculpin reintroduction, and this could ultimately lead to sportfishing opportunities by increasing the forage base for native brook trout ( Salvelinus fontinalis ).

Maryland↗
USGS2022

Potential effects of energy development on environmental resources of the Williston Basin in Montana, North Dakota, and South Dakota—Species of conservation concern

The ecosystems of the Williston Basin provide direct and indirect benefits to society. These benefits include carbon sequestration, flood control, nutrient rich soils for agricultural productivity, and habitat for wildlife. This chapter’s main focus is on the effects of energy development on species that occupy the ecosystems in the Williston Basin. We compiled a list of documented species of conservation concern that are of most interest to Federal regulators and resource managers. Species of concern were either listed as endangered or threatened under the Endangered Species Act or listed by States as species of concern in Natural Heritage Program checklists or State Wildlife Action Plans. All told, we determined that 357 species of concern likely occupy the Williston Basin. These species represented seven different taxonomic groups: plants (native and nonnative), terrestrial invertebrates, birds, mammals, reptiles and amphibians, and fish and mussels. We reviewed the existing scientific information pertaining to potential effects of energy development on these taxonomic groups. Currently, little is known about the abundance and distribution of many of these species. But some information exists that may be useful in predicting the potential effects of energy development on certain taxonomic groups. Most of this information has been developed through scientific research focused on effects to mammal and bird populations. Effects to other taxonomic groups seems to be understudied. In general, it seems that disturbances and modifications associated with development have the potential to negatively affect a wide range of species; however, many studies produce uncertain results because they are not designed to compare populations before and after energy development takes place. Most of these studies also do not monitor resources over multiple years and thus cannot detect population trends. Likewise, there are few examples of landscape-scale assessments of the cumulative effects of energy development that could be used for species or habitat management purposes. We suggest that more research needs to be completed to measure potential effects to a broad range of species in multiple taxonomic groups. This may require also developing some understanding about the basic ecology of many of the species covered in this report. In concert with this more basic research, we also suggest that more comprehensive assessments of potential negative cumulative effects across the Williston Basin should be developed in an effort to guide more strategic management of biological resources.

Montana, North Dakota, South Dakota↗
USGS1998

Concepts for monitoring water quality in the Spokane River Basin, northern Idaho and eastern Washington

Numerous environmental studies have been conducted in the Spokane River Basin over the past several decades by government agencies, academic institutions, and environmental engineering firms. Most of these efforts have focused on the environmental effects of more than a century of silver, lead, and zinc mining and oreprocessing activities in the South Fork Coeur d'Alene River valley in northern Idaho. Several studies also have assessed the water quality and potential for eutrophication of Coeur d'Alene and Long Lakes and the Coeur d'Alene, St. Joe, and Spokane Rivers. Because past investigations often were limited in scope and employed different approaches and methods, an integrated understanding of hydrologic, water-quality, and aquatic biological conditions still is lacking for the basin as a whole. Substantial resources are being spent for water-quality and naturalresource management, and for mitigating the adverse environmental effects of past mining activities in the basin. A water-quality monitoring network, integrated with the decision-making processes associated with these efforts, could be of considerable value. The purpose of such a monitoring network is to produce high-quality information on which to base sound water-quality and natural-resource management decisions and to assess the effectiveness of those decisions. A streamflow- and water-quality monitoring infrastructure already exists in the Spokane River Basin. This infrastructure consists of 20 lake-stage and streamflow-gaging stations, representing specific drainages or subdrainages and, in many cases, specific stream reaches or subreaches. These gaging stations are operated by the U.S. Geological Survey (USGS), several of them in cooperation with State and Federal agencies and a private utility company. Extensive streamflow data are available, some dating from the late 1800s. Water-quality data are also available from recent USGS cooperative studies in the Coeur d'Alene Lake watershed. A nutrient load/lake response (eutrophication) model has been developed for Coeur d'Alene Lake. Hydraulic models for estimating streamflow through the low-gradient reaches of the Coeur d'Alene and St. Joe Rivers have been developed. Trace-element concentrations and distributions in sediments in the lower South Fork and main-stem Coeur d'Alene River flood plain and the bed of Coeur d'Alene Lake have been assessed. Trace-element transport models have been developed for the lower Coeur d'Alene River system; estimates of annual load are available from the early 1990's to the present (1998). The USGS is monitoring traceelement concentrations and transport at seven gaging stations in the lower Coeur d'Alene River system and upper Spokane River, in cooperation with the U.S. Environmental Protection Agency. Fish and macroinvertebrate community assessment and tissue contaminant analyses at four Coeur d'Alene and St. Joe River gaging stations will begin in 1998, either as part of the Idaho Surface- Water Quality Ambient Monitoring Network operated by USGS in cooperation with the Idaho Division of Environmental Quality, or for the Northern Rockies Intermontane Basins (NROK) study of the USGS National Water-Quality Assessment (NAWQA) Program. Several gaging stations in the Spokane River Basin are being considered for routine sampling sites for the NROK NAWQA study. Several other sites also will be sampled for contaminants in bed sediment and fish tissue for the NROK study. Combined with appropriate sampling and data interpretation strategies, the existing USGS gaging-station network and data base could provide integrated water-quality information needed for sound environmental and resource-management decisions throughout the Spokane River Basin.

Idaho;Washington↗
USGS2021

Egg retention of high-latitude sockeye salmon (Oncorhynchus nerka) in the Pilgrim River, Alaska, during the Pacific marine heatwave of 2014–2016

Ocean and freshwater conditions can influence spawning success of Pacific salmon ( Oncorhynchus spp.) by governing the energy content of fish at the start of and during the spawning migration. Ocean conditions determine the energy stores of fish at the freshwater entry, while freshwater conditions determine how quickly stored energy is depleted as individuals migrate to spawning grounds in natal rivers and lakes. We assessed the occurrence of sockeye salmon ( Oncorhynchus nerka ) egg retention (failure to deposit eggs) in a high-latitude (~ 65°N) watershed that has a large, inter-annual variation in the number of returning adults. We also explored relationships between ocean and freshwater conditions with egg retention of female sockeye salmon. The proportion of females with egg retention (> 50 eggs) varied by threefold (12 to 36%) across years (2013 to 2020) and was related to ocean conditions represented by the North Pacific Index (NPI). Egg retention was more common in years with low NPI values (a stronger Aleutian Low) in association with the Pacific marine heatwave of 2014–2016 that disrupted food webs. This initial study contains the first empirical data observing the influence of ocean conditions on egg retention for any Pacific salmon population. The lack of any relationship between egg retention and freshwater temperatures was consistent with water temperatures primarily occurring below thresholds associated with heat stress related mortality (< 18 °C). Understanding the amount of egg retention and how environmental drivers influence egg retention within Pacific salmon populations provides insights for managers assessing the number of successful spawners and helps refine escapement-based management efforts.

Alaska↗
USGS2010

North American osprey populations and contaminants: Historic and contemporary perspectives

Osprey ( Pandion haliaetus ) populations were adversely affected by DDT and perhaps other contaminants in the United States and elsewhere. Reduced productivity, eggshell thinning, and high DDE concentrations in eggs were the signs associated with declining osprey populations in the 1950s, 1960s, and 1970s. The species was one of the first studied on a large scale to bring contaminant issues into focus. Although few quantitative population data were available prior to the 1960s, many osprey populations in North America were studied during the 1960s and 1970s with much learned about basic life history and biology. This article reviews the historical and current effects of contaminants on regional osprey populations. Breeding populations in many regions of North America showed post-DDT-era (1972) population increases of varying magnitudes, with many populations now appearing to stabilize at much higher numbers than initially reported in the 1970s and 1980s. However, the magnitude of regional population increases in the United States between 1981 (first Nationwide Survey, ∼8,000 pairs), when some recovery had already occurred, 1994 (second survey, ∼14,200), and 2001 (third survey, ∼16,000–19,000), or any other years, is likely not a simple response to the release from earlier contaminant effects, but a response to multi-factorial effects. This indirect “contaminant effects” measurement comparing changes (i.e., recovery) in post-DDT-era population numbers over time is probably confounded by changing human attitudes toward birds of prey (shooting, destroying nests, etc.), changing habitats, changing fish populations, and perhaps competition from other species. The species' adaptation to newly created reservoirs and its increasing use of artificial nesting structures (power poles, nesting platforms, cell towers, channel markers, offshore duck blinds, etc.) are two important factors. The timing of the initial use of artificial nesting structures, which replaced declining numbers of suitable trees at many locations, varied regionally (much later in the western United States and Mexico). Because of the increasing use of artificial nesting structures, there may be more ospreys nesting in North America now than ever before. Now, with the impact of most legacy organic contaminants (DDT, other organochlorine [OC] pesticides, polychlorinated biphenyls [PCB], polychlorinated dibenzo- p -dioxins [PCDD], polychlorinated dibenzofurans (PCDF]) greatly reduced or eliminated, and some osprey populations showing evidence of stabilizing, the species was proposed as a Worldwide Sentinel Species for evaluating emerging contaminants. Several emerging contaminants are already being studied, such as polybrominated diphenyl ethers (PBDE) and perfluorinated acids and sulfonate compounds (PFC). The many advantages for continued contaminant investigations using the osprey include a good understanding of its biology and ecology, its known distribution and abundance, and its ability to habituate to humans and their activities, which permits nesting in some of the potentially most contaminated environments. It is a top predator in most ecosystems, and its nests are relatively easy to locate and study with little researcher impact on reproductive success.

Journal of Toxicology and Environmental Health, Pa↗
USGS2017

Biological effects-based tools for monitoring impacted surface waters in the Great Lakes: a multiagency program in support of the Great Lakes Restoration Initiative

There is increasing demand for the implementation of effects-based monitoring and surveillance (EBMS) approaches in the Great Lakes Basin to complement traditional chemical monitoring. Herein, we describe an ongoing multiagency effort to develop and implement EBMS tools, particularly with regard to monitoring potentially toxic chemicals and assessing Areas of Concern (AOCs), as envisioned by the Great Lakes Restoration Initiative (GLRI). Our strategy includes use of both targeted and open-ended/discovery techniques, as appropriate to the amount of information available, to guide a priori end point and/or assay selection. Specifically, a combination of in vivo and in vitro tools is employed by using both wild and caged fish (in vivo), and a variety of receptor- and cell-based assays (in vitro). We employ a work flow that progressively emphasizes in vitro tools for long-term or high-intensity monitoring because of their greater practicality (e.g., lower cost, labor) and relying on in vivo assays for initial surveillance and verification. Our strategy takes advantage of the strengths of a diversity of tools, balancing the depth, breadth, and specificity of information they provide against their costs, transferability, and practicality. Finally, a series of illustrative scenarios is examined that align EBMS options with management goals to illustrate the adaptability and scaling of EBMS approaches and how they can be used in management decisions.

Great Lakes↗
USGS2013

Distance, dams and drift: What structures populations of an endangered, benthic stream fish?

Spatial population structure plays an important role in species persistence, evolution and conservation. Benthic stream fishes are diverse and frequently imperilled, yet the determinants and spatial scaling of their population structure are understudied. We investigated the range-wide population genetic structure of Roanoke logperch ( Percina rex ), an endangered, benthic stream fish of the eastern United States. Fish were sampled from 35 sites and analysed at 11 microsatellite DNA loci. Clustering models were used to sort individuals into genetically cohesive groups and thereby estimate the spatial scaling of population structure. We then used Bayesian generalized linear mixed models (BGLMMs) to test alternative hypotheses about the environmental factors most responsible for generating structure, as measured by the differentiation statistic F ST . Clustering models delineated seven discrete populations, whose boundaries coincided with agents of fragmentation, including hydroelectric dams and tailwaters. In the absence of hydrological barriers, gene flow was extensive throughout catchments, whereas there was no evidence for contemporary dispersal between catchments across barriers. In the best-supported BGLMM, F ST was positively related to the spatial distance and degree of hydrological alteration between sites and negatively related to genetic diversity within sites. Whereas the effect of tailwaters was equivocal, dams strongly influenced differentiation: the effect of a dam on F ST was comparable to that of a between-site distance of over 1200 km of unimpounded river. Overall, the effect of distance-mediated dispersal was negligible compared to the combined effects of fragmentation and genetic drift. The contemporary population structure of P. rex comprises a few geographically extensive ‘islands’ that are fragmented by hydroelectric projects. This information clarifies the importance of a catchment-scale perspective on conserving the species and suggests that its recovery may require genetic and/or demographic reconnection of presently isolated populations.

North Carolina, Virginia↗
USGS2007

Relations of principal components analysis site scores to algal-biomass, habitat, basin-characteristics, nutrient, and biological-community data in the Whitewater River and East Fork White River basins, Indiana, 2002

Data were gathered from May through September 2002 at 76 randomly selected sites in the Whitewater River and East Fork White River Basins, Indiana, for algal biomass, habitat, nutrients, and biological communities (fish and invertebrates). Basin characteristics (land use and drainage area) and biolog-ical-community attributes and metric scores were determined for the basin of each sampling site. Yearly Principal Compo-nents Analysis site scores were calculated for algal biomass (periphyton and seston). The yearly Principal Components Analysis site scores for the first axis (PC1) were related using Spearman's rho to the seasonal algal-biomass, basin-charac-teristics, habitat, seasonal nutrient, and biological-community attribute and metric score data. The periphyton PC1 site score was not significantly related to the nine habitat or 12 nutrient variables examined. One land-use variable, drainage area, was negatively related to the periphyton PC1. Of the 43 fish-community attributes and metrics examined, the periphyton PC1 was negatively related to one attribute (large-river percent) and one metric score (car-nivore percent metric score). It was positively related to three fish-community attributes (headwater percent, pioneer percent, and simple lithophil percent). The periphyton PC1 was not statistically related to any of the 21 invertebrate-community attributes or metric scores examined. Of the 12 nutrient variables examined two were nega-tively related to the seston PC1 site score in two seasons: total Kjeldahl nitrogen (July and September), and TP (May and September). There were no statistically significant relations between the seston PC1 and the five basin-characteristics or nine habitat variables examined. Of the 43 fish-community attributes and metrics examined, the seston PC1 was positively related to one attribute (headwater percent) and negatively related to one metric score (large-river percent metric score) . Of the 21 invertebrate-community attributes and metrics exam-ined, the seston PC1 was negatively related to one metric score (number of individuals metric score). To understand how the choice of sampling sites might have affected the results, an analysis of the drainage area and land use was done. The sites selected in the Whitewater River Basin were generally small drainage basins; compared to Whitewater River Basin sites, the sites selected in the East Fork White River Basin were generally larger drainage basins. Although both basins were dominated by agricultural land use the Whitewater River Basin sites had more land in agriculture than the East Fork White River Basin sites. The values for nutrients (nitrate, total Kjeldahl nitrogen, total nitrogen, and total phosphorus) and chlorophyll a (per-iphyton and seston) were compared to published U.S. Environmental Protection Agency (USEPA) values for Aggregate Nutrient Ecoregions VI and IX and USEPA Level III Ecore-gions 55 and 71. Several nutrient values were greater than the 25th percentile of published USEPA values. Chlorophyll a (periphyton and seston) values were either greater than the 25thpercentile of published USEPA values or they extended data ranges in the Aggregate Nutrient and Level III Ecore-gions. If the values for the 25th percentile as proposes by the USEPA were adopted as nutrient water-quality criteria, many samples in the Whitewater River and East Fork White River Basins would have exceeded the criteria.

Indiana↗
USGS2018

The influence of drought on flow‐ecology relationships in Ozark Highland streams

Drought and summer drying can have strong effects on abiotic and biotic components of stream ecosystems. Environmental flow‐ecology relationships may be affected by drought and drying, adding further uncertainty to the already complex interaction of flow with other environmental variables, including geomorphology and water quality. Environment–ecology relationships in stream communities in Ozark Highland streams, USA, were examined over two years with contrasting environmental conditions, a drought year (2012) and a flood year (2013). We analysed fish, crayfish and benthic macroinvertebrate assemblages using two different approaches: (1) a multiple regression analysis incorporating predictor variables related to habitat, water quality, geomorphology and hydrology and (2) a canonical ordination procedure using only hydrologic variables in which forward selection was used to select predictors that were most related to our response variables. Reach‐scale habitat quality and geomorphology were found to be the most important influences on community structure, but hydrology was also important, particularly during the flood year. We also found substantial between‐year variation in environment–ecology relationships. Some ecological responses differed significantly between drought and flood years, while others remained consistent. We found that magnitude was the most important flow component overall, but that there was a shift in relative importance from low flow metrics during the drought year to average flow metrics during the flood year, and the specific metrics of importance varied markedly between assemblages and years. Findings suggest that understanding temporal variation in flow‐ecology relationships may be crucial for resource planning. While some relationships show temporal variation, others are consistent between years. Additionally, different kinds of hydrologic variables can differ greatly in terms of which assemblages they affect and how they affect them. Managers can address this complexity by focusing on relationships that are temporally stable and flow metrics that are consistently important across groups, such as flood frequency and flow variability.

Arkansas, Missouri, Oklahoma↗
USGS2002

Flux of dissolved forms of mercury across the sediment-water interface in Lahontan Reservoir, Nevada

Field and laboratory studies were conducted between April 30, 2001 and July 19, 2001 to provide the first direct measurements of the benthic flux of dissolved (0.2-micrometer filtered) mercury species (total and methylated forms) between the bottom sediment and water column at three sites: two in the southern lobe and one in the northern lobe of Lahontan Reservoir, Nevada (Background, Fig. 1). Dissolved-mercury species and predominant ligands (represented by dissolved organic carbon, and sulfides) were the solutes of primary interest. Benthic flux, sometimes referred to as internal recycling, represents the transport of dissolved chemical species between the water column and the underlying sediment. Water-quality managers often assess and prioritize remediation strategies for aquatic systems, in particular Super Fund sites that have been adversely affected by anthropogenic activities. In the case of the Lahontan Reservoir along the Carson River, mercury associated with historic gold and silver extraction has been fluvially transported and accumulated in the bottom sediments. Frequent demands have been made by Super Fund site managers and the general public to quantify the connections between fluxes of contaminants and the health, abundance, and distribution of biological resources (Kuwabara and others, 1999). As part of a comprehensive examination of transport processes affecting mercury dynamics in Lahontan Reservoir, this study focuses on a poorly understood, yet potentially predominant, source of mercury to the reservoir water column, which is internal recycling, or benthic flux of mercury species and associated ligands. Mobilization, flux, and biological availability of mercury into the water column of the reservoir are affected by physical (e.g., advection and diffusion), chemical (i.e., oxidationreduction reactions, complexation and repartitioning) and biological processes (Flegal and others, 1991; Kuwabara and others, 1996; Grenz and others, 2000, Topping and others, 2001). The results described herein followed from the integration of current project studies with information needs identified by the U.S. Environmental Protection Agency, Region 9 (USEPA) to provide initial determinations of dissolved total and methyl-mercury fluxes from the sediments into the water column of Lahontan Reservoir. Recent mercury distribution and transformation studies in the Carson River system by Marvin-Dipasquale and others (2001) indicated the potential importance of sediment-water interactions in describing mercury speciation, its sources and sinks. Quantifying and understanding the magnitude and variability of these interactions are critical to the accurate assessment of contaminant sources and loads as well as to the development of process-integrated water-quality models for this mining-affected system. With a variety of strategies under consideration to determine how to most efficiently improve the water quality in the Carson River system, the primary question posed in this study was, “What processes regulate the fate and transport of mercury species in Lahontan Reservoir? In particular, are sources and sinks of dissolved total and methyl mercury associated with the bottom sediment within Lahontan Reservoir significant relative to major surface-water inputs from the Carson River?” The question was motivated by a number of factors. First, extraction of precious metals up gradient of the reservoir provide a historic source of elemental mercury that continues to be fluvially transported in dissolved and particulate phases (Hoffman and Taylor, 1998; Carroll and others, 2000; Carroll and Warwick, 2001). Elevated total and methyl mercury concentrations into the reservoir have been well documented (Priessler and others, 1999; Jones and others, 1999; Allander and others, 2001, Marvin-Dipasquale and others, 2001). Therefore, determining whether some fraction of this sediment-associated mercury can remobilize for transport to the overlying water and subsequently to down-stream portions of the Carson River is necessary. Second, elevated concentrations of mercury species in reservoir water, sediment, and fish have prompted a compilation, and comparison of dominant contaminant sources so that appropriate remedial strategies can be designed and implemented. Third, changes in oxidizing or reducing (redox) conditions and nutrient availability near the sediment-water interface (e.g., during phytoplankton blooms) can dramatically alter the mobility of metals and ligands associated with the bottom sediment as episodic sources of carbon settle out and accumulate (Thompson and others, 1981). Finally, there is a growing body of evidence from other aquatic systems that benthic flux or internal recycling of contaminants and nutrients is an important process to consider in developing appropriate ecosystem water-quality models (Wood and others, 1995; Kuwabara and others, 2000). The need for more refined numerical and conceptual models for mercury dynamics within the Carson River system thus clearly exists. This report is formatted unconventionally in a pyramid-like structure to effectively serve the needs of diverse parties interested in reviewing or acquiring information at various levels of detail (Appendix 1). The report enables quick transitions between the initial summary information (figuratively at the top of the pyramid) and later details of methods or results (that is, figuratively towards the base) using hyperlinks to supporting figures and tables, and an electronically linked Table of Contents.

Nebraska↗
USGS2023

Drivers and timing of grass carp movement within the Sandusky River, Ohio: Implications to potential spawning barrier response strategy

Understanding the timing and drivers of migration can be beneficial for improving response efforts aimed at reducing invasive species densities. Efforts by management agencies to remove grass carp ( Ctenopharyngodon idella) , an invasive species to the Laurentian Great Lakes, have been ongoing in Lake Erie tributaries since 2018. To bolster efforts, deployment of a non-physical barrier has been proposed downstream of a known grass carp spawning location near Brady’s Island (BI) in the Sandusky River, OH, USA to limit recruitment. However, knowledge of grass carp migratory timing, the environmental variables that cue carp migration, and the potential effects the barrier might impose on native fish [e.g., walleye ( Sander vitreus )] movements would help inform barrier deployment and scheduling. We used detection data from grass carp ( n = 29) and walleye ( n = 84) tagged with acoustic transmitters to address four objectives: (1) quantify interannual variation (years = 2015–2021) of grass carp migration timing to BI; (2) evaluate timing of different grass carp movement modalities (residents and migrants); (3) assess overlap in migration timing with native walleye, and (4) evaluate environmental cues of grass carp migration to BI. Median grass carp arrival at BI occurred within a three-week period (148–165 Julian days), suggesting that deploying a barrier immediately prior to this time frame may be effective for deterring grass carp spawning. Temperature, photoperiod, and discharge influenced grass carp migration timing given that most arrival events occurred at daylengths > 14.5 h, temperatures exceeding 18 °C, and low discharge events (< 3,000 cubic feet second −1 [CFS]). Minimal interannual variability in migration timing existed for grass carp and walleye over a six-year period. However, the median departure time of walleye was more than 45 days before the median arrival time of grass carp, suggesting a spawning barrier may minimally affect walleye spawning. No differences in arrival timing at BI were observed between grass carp migratory contingents, indicating that if a barrier were deployed in the spring, it would likely affect all grass carp spatial contingents. This work highlights management implications of barrier control efforts of aquatic invasive species and provides insight into the environmental cues that grass carp use for upstream migration.

Ohio↗
USGS2020

Research, monitoring, and evaluation of emerging issues and measures to recover the Snake River Fall Chinook Salmon ESU: January 2019 - December 2019

The portion of the Snake River fall Chinook salmon Oncorhynchus tshawytscha evolutionary significant unit (ESU) that spawns upstream of Lower Granite Dam transitioned from low to high abundance during 19922019 in association with U.S. Endangered Species Act recovery efforts and other federally mandated actions. This annual report focuses on (1) numeric and habitat use responses by natural- and hatchery-origin spawners, (2) phenotypic and numeric responses by natural-origin juveniles, and (3) use of a small unmanned aerial system (sUAS) to search for fall Chinook salmon redds and carcasses. Spawners have located and used most of the available spawning habitat and that habitat is gradually approaching redd capacity. Timing of spawning and fry emergence have been relatively stable, but effects of density dependence are evident in juvenile life stages. Apparent abundance of juvenile fall Chinook salmon has increased and we noted the following responses: parr dispersal from riverine rearing habitat into Lower Granite Reservoir has become earlier; growth rate (g/d) and dispersal size of parr declined; and passage timing of smolts from the two Snake River reaches has become earlier and downstream movement rate faster. These findings coupled with stock-recruitment analyses presented in this report provide evidence for density-dependence in the Snake River reaches and in Lower Granite Reservoir that was influenced by the expansion of the recovery program. The long-term goal is to use this information in a comprehensive modeling effort to conduct action-effectiveness and uncertainty research and to inform Fish Population, Hydrosystem, Harvest, Hatchery, and Predation and Invasive Species Management Research, Monitoring, and Evaluation (RM&E) progams. In 2019, the U.S. Geological Survey (USGS) shifted survey efforts in the Snake River toward deepwater redd searches and fish collection for parentage-based tagging (PBT) analyses because all unmanned aerial system (UAS) activities were suspended by the Department of the Interior two weeks into the spawning season. We counted 81 deepwater redds at 17 of the 29 sites surveyed. Redd depths averaged 3.6 m. We collected a total of 123 live fall Chinook salmon from 16 unique geographic locations that spanned 55 river kilometers. Forty-six fish were recovered at Eureka Bar (rkm 307.1) and Kirby Creek (rkm 352.0), which accounted for 37% of all collected fish in 2019. Most (73 fish) post-spawned salmon were collected from early to mid-November just after peak spawning. A summary of 2019 PBT results can be found in Appendix A.1. In 2019, we PIT tagged subyearling fall Chinook salmon in both the Snake and Clearwater rivers. In the Snake River, we tagged 410 fish with 8-mm tags, 666 fish with 9-mm tags, and 1,082 fish 12-mm tags. During seining, our recapture rate of previously tagged fish was slightly higher in the lower reach at 11.4% than in the upper reach at 10.6%. In an effort to represent more of the population through tagging, we tagged fish as small as 45 mm with 8-mm tags at one site in the upper reach. This allowed us to increase the number of fish tagged in that reach by 17.7%. An additional 10.6% of collected fish could have been tagged in the lower reach had we used 8-mm tags in that reach. In the Clearwater River, we tagged 2,451 subyearlings and recaptured 260 (10.6%) fish in the river and 66 fish (48 tagged by USGS, 18 tagged by the Nez Perce Tribe) at Lower Granite Dam during October to provide information for growth estimation. Within riverine habitats, growth in both length and mass were higher for fish tagged with 8-mm tags than with 9- and 12-mm tags. Estimated growth in length and mass of subyearlings was higher in Lower Granite Reservoir than in riverine habitats. We adapted existing statistical models used to estimate abundance of steelhead and spring/summer Chinook salmon for fall Chinook salmon passing Lower Granite Dam. Run reconstruction efforts to date at Lower Granite Dam for Snake River fall Chinook salmon have provided estimates of the number of returning adults but with no measure of uncertainty about the estimates. The objective of this study was to estimate the abundance, with uncertainty, of marked (coded-wire tagged CWT or adipose clipped) and unmarked fall Chinook salmon past Lower Granite Dam for return years 20032018. Estimating uncertainty is important for informing the state-space life cycle model (Chapter 5), which incorporates both observation and process uncertainty into parameter estimates. The coefficient of variation (CV) for log- abundance was 1.0% or less in all years, whereas the CV for abundance averaged 4.2% and ranged from 1.4% to 10.4% among years. Over the past five years, we have been developing a two-stage state-space life-cycle model for naturally produced fall Chinook salmon in the Snake River basin. Initial efforts focused on generating juvenile and adult abundance estimates, with estimates of uncertainty, for informing the life-cycle model. In this report we 1) describe the statistical life-cycle model and improvements made since our last report to the Independent Scientific Advisory Board (ISAB), 2) estimate the effects of covariates on key demographic parameters, and 3) use the fitted life- cycle model to simulate population trajectories under hydrosystem actions proposed for the NOAA 2020 Biological Opinion (hereafter, the Proposed Action). Major recent advancements to the model include revised juvenile abundance estimates, the ability to estimate smolt-to-adult return rates (SAR) separately for subyearling and yearling juvenile fall Chinook salmon, and improvements in the observation model for estimating age, sex, and outmigration structure in adult returns. We examined the effect of numerous environmental, hydrosystem, and ocean covariates on key demographic parameters but only a few covariates were significant. For the adult-to-juvenile transition, we found the maximum weekly river flows during the winter egg- incubation period had a significant negative effect on the juvenile outmigrant abundance from that brood year. For subyearling outmigrants, percent spill during the summer had a significant positive effect on SAR and the mean winter PDO (Pacific Decadal Oscillation) had a significant negative effect on SAR. For yearling outmigrants, NPGO (North Pacific Gyre Oscillation) had a significant positive effect on SAR. We used the fitted model to simulate population trajectories under the Proposed Action, and the median 10-year geometric mean abundance was 8,222 female spawners (interquartile range: 2,592 26,714). Overall, the probability of quasi- extinction (probability of falling below 50 female spawners for 4 consecutive years) was low, with only 1.6% of all simulations having a quasi-extinction probability >0.95. Although quasi-extinction probability was low, we did not assess the additional effect of climate change, which would be expected to increase quasi-extinction probability.

Idaho, Oregon, Washington↗
USGS2009

Lead in the environment

Anthropogenic uses of lead have probably altered its availability and environmental distribution more than any other toxic element. Consequently, lead concentrations in many living organisms may be approaching thresholds of toxicity for the adverse effects of lead. Such thresholds are difficult to define, as they vary with the chemical and physical form of lead, exposure regime, other elements present and also vary both within and between species. The technological capability to accurately quantify low lead concentrations has increased over the last decade, and physiological and behavioral effects have been measured in wildlife with tissue lead concentrations below those previously considered safe for humans.s.236 Consequently. lead criteria for the protection of wildlife and human health are frequently under review, and 'thresholds' of lead toxicity are being reconsidered. Proposed lead criteria for the protection of natural resources have been reviewed by Eisler. Uptake of lead by plants is limited by its generally low availability in soils and sediments, and toxicity may be limited by storage mechanisms and its apparently limited translocation within most plants. Lead does not generally accumulate within the foliar parts of plants, which limits its transfer to higher trophic levels. Although lead may concentrate in plant and animal tissues, no evidence of biomagnification exists. Acid deposition onto surface waters and soils with low buffering capacity may influence the availability of lead for uptake by plants and animals, and this may merit investigation at susceptible sites. The biological significance of chronic low-level lead exposure to wildlife is sometimes difficult to quantify. Animals living in urban environments or near point sources of lead emission are inevitably subject to greater exposure to lead and enhanced risk of lead poisoning. Increasingly strict controls on lead emissions in many countries have reduced exposure to lead from some sources. and the .reduction of lead in gasoline has resulted in lower tissue lead concentrations in humans and wildlife from many, particularly urban, locations. However, it has been suggested that increasing use of organic lead compounds as catalysts for the production of plastics and as wood preservatives and biocides could adversely affect wildlife. The most significant source of direct wildlife mortality from lead is spent gunshot and fishing sinkers. Elevated mortality from shot ingestion in avian species resulted in the introduction of nontoxic (steel) shot zones along certain flyways in the United States in the mid-1970s and a total ban on the use of lead for waterfowl and coot hunting nationwide by 1992. Several other countries are now following suit and have either banned or are in the process of restricting the use of lead shot for waterfowl hunting. In the United States it has been estimated that since the 1986 hunting season. when the use of nontoxic shot became widespread. over 6 million ducks have not been lost to lead poisoning. Raptors, especially eagles, have also apparently benefited. although lead poisoning from ingestion of bullet fragments remains a problem for the critically threatened California condor. Quantifying reductions in lead mortality rates would be difficult since eagle populations throughout North America are rapidly recovering from other anthropogenic perturbations, especially organochlorine pesticides.

Book chapter↗
USGS1989

Populations, productivity, and feeding habits of seabirds at Cape Thompson, Alaska: Final report

Investigations of seabird population sizes and breeding biology were conducted at Cape Thompson from 1959 to 1961 during pre-development studies associated with the Atomic through 1982, the Alaskan Program (OCSEAP) supported determine whether changes Energy Commission’s “Project Chariot.” From 1976 Outer Continental Shelf Environmental Assessment efforts to recensus seabirds at Cape Thompson and had occurred since the 1959-61 period. Prior to the present study, it had been 6 years since the last efforts to census seabird colonies in this area. We established a field camp at the and occupied it continuously until 31 were selected for cliff nesting species comprising the Cape Thompson complex, mouth of Ikijaktusak Creek on 2 July August 1988. Permanent study plots in four of the five discrete colonies and regular observations were made throughout the study to document attendance patterns, breeding phenology, and success of murres and kittiwakes. Periodic collections of adults offshore were used to determine the food habits of study species. Shore-based work was supplemented with offshore studies of seabird foraging from the USFWS vessel Eagle-Tiglax, 24-31 August (Fig. 2). Correlation analysis revealed negative trends in murre attendance at all Cape Thompson colonies between 1960 and 1982 or 1988, significantly so for 3 of the 5 colonies. Based on apparent changes in species composition within the colonies, Common Murres declined at a more rapid rate than Thick-billed Murres between 1960 and 1988. Combining information from all colonies, it appears that murre populations have been relatively stable since about 1979. In contrast to murres, the kittiwake population showed no significant trends between 1960 and 1982 or between 1960 and 1988. All fluctuations in kittiwake numbers documented between years were within the variability expected within years. Breeding productivity of murres was about average during 1988 (0.47 young/pair), whereas the productivity of kittiwakes was very poor (0.15 young/pair). Murres and kittiwakes fed mostly on arctic cod and sand lance distributed widely but in low concentrations (e.g., 0.1-10 g/m 3 ) UP to 1.20 km north and northwest of Cape Thompson. In the total area surveyed (225 km 2 ), only two major feeding aggregations were observed where fish school densities exceeded 15 g/ins. Forage fish densities were higher in shallow Alaska Coastal Current waters than offshore in Bering Sea waters, and piscivorous seabirds like murres and kittiwakes fed mostly in coastal waters. Reduced numbers of fish in murre and kittiwake stomachs in August and low breeding success of kittiwakes suggested that forage fish densities observed around Cape Thompson in late August were sufficient to sustain murres but were insufficient for, or inaccessible to, kittiwakes. The breeding failure of Black-legged Kittiwakes at Cape Thompson in 1988 was part throughout causes of kittiwakes of a pervasive syndrome of failure in this species observed the Bering/Chukchi seas and Gulf of Alaska in recent years. The recurrent widespread breeding failure need to be identified if are to have a role in area-wide population monitoring during the period of Alaskan OCS development by the oil and gas industry. The system of land-based plots established in 1988 is recommended for future population monitoring of cliff-nesting birds at Cape Thompson. Based on the coefficients of variation among counts observed in this study, it is estimated that 10 replicate counts per year would detect an 8% change in numbers of Thick-billed Murres between years and a 12% change in Common Murres, with 75% certainty of statistical significance at the 0.05 level. Similarly, a 9% annual change in the population of Black-legged Kittiwakes should be detectable at the 0.05 significance level given samples of 10 replicate counts of the land-based plots.

Alaska↗
USGS2025

Fisheries research and monitoring activities of the Lake Erie Biological Station, 2024

A comprehensive understanding of fish populations and their interactions is the cornerstone of modern fishery management and the basis for Lake Erie’s Fish Community Objectives (FCOs) developed in 2020 (Francis et al. 2020). The 2024 U.S. Geological Survey (USGS) Lake Erie Biological Station Annual Report is responsive to these FCOs and the USGS obligations via a Memorandum of Understanding (MOU 2017) with the Great Lakes Fishery Commission (GLFC) Council of Lake Committees (CLC) to provide scientific information in support of fishery management. Goals for the USGS Great Lakes Deepwater Fish Assessment and Ecological Studies were to monitor long-term changes in the fish community and track population dynamics of key fishes of interest to management agencies. Specific to Lake Erie, expectations were sustained investigations of native percids, prey fish populations, and Lake Trout. All work was conducted as part of the Deepwater Science Program under the authority of the Great Lakes Fishery Research Authorization Act of 2019 (16 USC §941h). The USGS 2024 Deepwater Science Program fieldwork began in Lake Erie in March and concluded in December, using trawl, gill net, hydroacoustic, lower trophic sampling devices, and telemetry methods. This work resulted in 44 bottom trawls covering 41 ha of lake bottom and catching 48,936 fish totaling 995 kg in the West Basin of Lake Erie, with detailed results described below. Overnight gill net sets (n=25) for coldwater species were performed in the East Basin of Lake Erie. A total of 8 km of gillnet was deployed during these surveys, which caught 106 fish, 92 of which were native coldwater species: Lake Trout, Burbot, and Lake Whitefish. Results from coldwater species assessments will be reported in the Coldwater Task Group report to the GLFC and the CLC (CTG 2025). These reports are used to inform Lake Trout stocking decisions and direct lamprey control measures (16 USC §939a). USGS hydroacoustic sampling included twenty-six 5-km transects (130 km total) in the Central Basin as part of a collaborative lake-wide survey with details and results reported by the Forage Task Group (FTG 2025). Lower trophic sampling provided data from zooplankton samples (n=12) and water quality profiles (n=12) to populate a database maintained by the Michigan Department of Natural Resources (MDNR), Ontario Ministry of Natural Resources (OMNR), Ohio Department of Natural Resources (ODNR), Pennsylvania Fish and Boat Commission (PFBC), and New York State Department of Environmental Conservation (NYSDEC). USGS also assisted CLC member agencies with deployment and maintenance of Great Lakes Acoustic Telemetry Observation System (GLATOS) infrastructure throughout all three Lake Erie basins and tributaries, supporting multiple coordinated telemetry investigations. This report presents biomass-based summaries of fish communities in western Lake Erie derived from USGS bottom trawl surveys conducted from 2013 to 2024 during June and September. The survey design compliments the August ODNR- OMNRF effort by reinforcing stock assessments with more robust data. Analyses herein evaluated trends in total biomass, abundance of dominant predator and forage species, non-native species composition, biodiversity, and community structure. Data from this effort are accessible for download (Keretz et al. 2025)

Lake Erie↗
USGS2022

Movement and habitat use by smallmouth bass Micropterus dolomieu velox in a dynamic Ozark Highlands riverscape

Stream fish movement in response to changing resource availability and habitat needs is important for fish growth, survival and reproduction. The authors used radio telemetry to evaluate individual movements, daily movement rates, home ranges and habitat-use characteristics of adult (278–464 mm L T ) Neosho smallmouth bass Micropterus dolomieu velox in three Ozark Highlands streams from June 2016 to February 2018. The authors quantified variation in movement and habitat use among seasons and streams and examined relations with select environmental cues ( i.e. , temperature and discharge), fish size and sex. Maximum movement distances were an order of magnitude greater in the larger Elk River (17.0 km) and Buffalo Creek (12.9 km) than in the smaller Sycamore Creek (1.71 km), were similar in both upstream and downstream directions and typically occurred during the spring. Most movement rates were ≤10 m day −1 in all streams and seasons, except for Elk River during spring. Ranking of linear mixed-effects models using AIC c supported that movement rates were much greater in spring and increased with stream size. Spring movement rate increased with discharge and water temperature; only weak relationships were apparent during other seasons. Increased variation in water temperature had a small negative effect on movement rate. Home range size was highly variable among individuals, ranging 45–15,061 m (median: 773 m), and was not related to fish size, sex, season or stream. Although some fish moved between rivers, this study's tagged fish did not use reservoir or associated interface habitat. Water temperatures used by this study's tagged fish followed seasonal patterns but indicated the use of thermal refugia during summer and winter. Deeper-water habitats were used in Buffalo Creek and in winter across all study streams, whereas greater velocities used in the Elk River likely reflect the increased use of run habitats. Use of pool habitats predominated among tagged fish, particularly in smaller streams. The results of this study indicate considerable heterogeneity in movement and habitat use within and among lotic populations of Neosho smallmouth bass. These findings suggest that population-specific management may be appropriate and highlight the importance of natural flow conditions ( i.e. , spring high flows) and connected habitats for this endemic sport fish, particularly in smaller streams.

Missouri, Oklahoma↗