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Bathymetry, substrate and circulation in Westcott Bay, San Juan Islands, Washington

Nearshore bathymetry, substrate type, and circulation patterns in Westcott Bay, San Juan Islands, Washington, were mapped using two acoustic sonar systems, video and direct sampling of seafloor sediments. The goal of the project was to characterize nearshore habitat and conditions influencing eelgrass ( Z. marina ) where extensive loss has occurred since 1995. A principal hypothesis for the loss of eelgrass is a recent decrease in light availability for eelgrass growth due to increase in turbidity associated with either an increase in fine sedimentation or biological productivity within the bay. To explore sources for this fine sediment and turbidity, a dual-frequency Biosonics sonar operating at 200 and 430 kHz was used to map seafloor depth, morphology and vegetation along 69 linear kilometers of the bay. The higher frequency 430 kHz system also provided information on particulate concentrations in the water column. A boat-mounted 600 kHz RDI Acoustic Doppler Current Profiler (ADCP) was used to map current velocity and direction and water column backscatter intensity along another 29 km, with select measurements made to characterize variations in circulation with tides. An underwater video camera was deployed to ground-truth acoustic data. Seventy one sediment samples were collected to quantify sediment grain size distributions across Westcott Bay. Sediment samples were analyzed for grain size at the Western Coastal and Marine Geology Team sediment laboratory in Menlo Park, Calif. These data reveal that the seafloor near the entrance to Westcott Bay is rocky with a complex morphology and covered with dense and diverse benthic vegetation. Current velocities were also measured to be highest at the entrance and along a deep channel extending 1 km into the bay. The substrate is increasingly comprised of finer sediments with distance into Westcott Bay where current velocities are lower. This report describes the data collected and preliminary findings of USGS Cruise B-6-07-PS conducted between May 31, 2007 and June 5, 2007.

Washington↗

California State Waters Map Series — Offshore of Bodega Head, California

Introduction In 2007, the California Ocean Protection Council initiated the California Seafloor Mapping Program (CSMP), designed to create a comprehensive seafloor map of high-resolution bathymetry, marine benthic habitats, and geology within the 3-nautical-mile limit of California’s State Waters. The CSMP approach is to create highly detailed seafloor maps through collection, integration, interpretation, and visualization of swath sonar data, acoustic backscatter, seafloor video, seafloor photography, high-resolution seismic-reflection profiles, and bottom-sediment sampling data. The map products display seafloor morphology and character, identify potential marine benthic habitats, and illustrate both the surficial seafloor geology and shallow subsurface geology. The Offshore of Bodega Head map area is located in northern California, about 70 km north of San Francisco and about 80 km south of Point Arena. The onshore part of the map area is largely undeveloped, used primarily for recreation, farms and ranches, and a few wineries. The small town of Bodega Bay, located on the east side of Bodega Harbor, is the largest cultural center. Bodega Harbor is an important commercial fishing base and, in season, an active sport fishing and recreation harbor. Much of the coastline from Bodega Head north to about 6 km north of the Russian River is part of Sonoma Coast State Park. The Offshore of Bodega Head map area includes two California Marine Protected Areas, the Bodega Head State Marine Reserve and the northern part of the Bodega Head State Marine Conservation Area. Additionally, the inland parts of two large estuaries in the map area, Estero Americano and Estero de San Antonio, have been designated as State Marine Recreational Management Areas. The map area is cut by the northwest-striking San Andreas Fault, the right-lateral transform boundary between the North American and Pacific plates. This fault juxtaposes rocks of the Jurassic and Cretaceous Franciscan Complex on the northeast with Cretaceous granitic rocks on the southwest, and it has an estimated slip rate of about 17 to 25 mm/yr in this area. The devastating great 1906 California earthquake (M7.8) is thought to have nucleated on the San Andreas Fault offshore of San Francisco, about 80 km south of Bodega Head, with the rupture extending northward through the Offshore of Bodega Head map area and an additional 220 km to the south flank of Cape Mendocino. North of the mouth of Salmon Creek, the coast and shoreline are rugged and scenic, characterized by flights of uplifted marine terraces, rocky promontories, nearshore sea stacks, kelp-rich coves, and both pocket beaches and longer beach strands, the latter of which include Wrights Beach and Portuguese Beach. The coast has lower relief between the mouth of Salmon Creek and Mussel Point, where South Salmon Creek Beach is backed by a large (about 4 km 2 ) complex of coastal sand dunes. The enormous volume of sand on the beach and in the dune field is derived by southward littoral drift from the Russian River, Salmon Creek, and smaller coastal watersheds. The sediment is trapped by protruding bedrock at Mussel Point, which represents the south end of the Russian River littoral cell. Bodega Head is underlain by Cretaceous granitic rocks, and its shoreline is variously characterized by relatively low-lying terraces, steep and high bluffs, and a few pocket beaches. East of Bodega Head, Doran Beach (part of Doran Regional Park) is a 1.7-km-long sand spit that forms the north boundary of Bodega Bay and the south boundary of Bodega Harbor. The coast south of Doran Beach on the east flank of Bodega Bay is composed of rocky bluffs, hummocky marine terraces, and a few small pocket beaches. The bluffs are underlain by sheared rocks of the Franciscan Complex and are highly susceptible to landslides. This section of coast includes two prominent watersheds, Estero Americano and Estero de San Antonio, which drain westward into Bodega Bay. The offshore part of the Offshore of Bodega Head map area is characterized by an extensive, rugged and rocky shelf underlain by Cretaceous granitic rocks. This rocky terrain, centered offshore of Bodega Head, extends northwestward for about 15 km, from the south edge of the map area (where it forms the west boundary of Bodega Bay) to the northern-central part of the map area offshore of the mouth of Salmon Creek. This rocky seafloor reaches water depths of 40 to 80 m and is overlain by young sediment. Circulation over the shelf and seafloor in the map area (and in the broader central California region) is dominated by the southward-flowing California Current, the eastern boundary current of the North Pacific Gyre. Associated upwelling brings cool, nutrient-rich waters to the surface, resulting in high biological productivity. Persistent northwest winds are sometimes weak or absent during the fall and winter, causing the California Current to move farther offshore so that the shelf is affected by the Davidson Current, a weaker northward-flowing countercurrent. As a result, net flow over the continental shelf is commonly southeastward during the spring and summer and northwestward during the fall and winter. Throughout the year, this part of the northern California coast is exposed to four wave climate regimes: the north Pacific swell, the southern swell, northwest wind waves, and local wind waves. The north Pacific swell dominates in winter months (typically November through March). During summer months, the largest waves come from the southern swell, generated by storms in the south Pacific and offshore of Central America. Northwest wind waves affect the coast throughout the year, whereas local wind waves are most common from October to April. Potential marine benthic habitats in the Offshore of Bodega Head map area include unconsolidated continental-shelf sediments, mixed continental-shelf substrate, and hard continental-shelf substrate. Rocky-shelf outcrops and rubble are considered to be promising potential habitats for rockfish and lingcod, both of which are recreationally and commercially important species.

California↗

Index of surface-water stations in Texas, January 1984

The U.S. Geological Survey's investigations of the water resources of Texas are conducted in cooperation with the Texas Department of Water Resources, river authorities, cities, counties, U.S. Army Corps of Engineers, U.S. Bureau of Reclamation, International Boundary and Water Commission, and others. Investigations are under the general direction of C. W. Boning, District Chief, Texas District. The Texas District office is located in the Federal Building, 300 East 8th Street, Austin, Texas 78701. As of January 1, 1984, 399 stream-gaging, 86 reservoir-contents, 19 stage, 2 periodic discharge through range, 42 flood-hydrograph partial-record, 15 floodprofile partial-record, 34 low-flow partial-record, 11 crest-stage partial-record, 11 tide-level , 60 daily chemical-qual ity, 27 continuous-recording water-quality, 187 periodic chemical-qual ity, 175 periodic organic-quality, 60 pesticides, 1 sediment, 43 periodic sediment, 109 periodic biological, 28 continuous-recording water temperature, and 37 national stream-quality accounting network stations were in operation. Plate 1 shows the location of surface-water streamflow or reservoircontent and chemical-qual ity or sediment stations in Texas. Plate 2 shows the location of partial-record surface-water stations. This index shows the station number and name, latitude and longitude, type of data collected, and the office principally responsible for the data collection (table 1). An 8-digit permanent numerical designation for gaging stations has been adopted on a nationwide basis; stations are numbered and listed in downstream order. In the downstream direction along the main stem, all stations on a tributary entering above a main-stem station are listed before that station. A tributary entering between two main-stem stations is listed between them. A similar order is followed in listing stations on first rank, second rank, and other ranks of tributaries. To indicate the rank of any tributary on which a gaging station is situated and the stream to which it is an immediate tributary, each indention in the listing of gaging stations represent one rank. This downstream order and system of indention show which gaging stations are on tributaries between any two stations on a main stem and the rank of the tributary on which each gaging station is situated. On plates 1 and 2 the 8-digit station number is abbreviated because of space limitation.

Texas↗

Assessment of ground-water contamination by coal-tar derivatives, St. Louis Park area, Minnesota

Operation of a coal-tar distillation and wood-preserving facility in St. Louis Park, Minnesota, during 1918-72 contaminated ground water with coal-tar derivatives and inorganic chemicals. Coal-tar derivatives entered the groundwater system through three major paths: (1) Spills and drippings that percolated to the water table, (2) surface runoff and plant process water that was discharged to wetlands south of the former plant site, and (3) movement of coal tar directly into bedrock aquifers through a multiaquifer well on the site. In the drift, Platteville, and St. Peter aquifers, ground water flows laterally from west to east and vertically downward. Near the former plant site, creosote-like organic fluids have migrated vertically downward through the drift and are being partially dissolved by ground water. Ground water has preferentially mobilized low-molecular-weight compounds such as phenolic compounds, alkyl-benzenes, and naphthalene, although polynuclear aromatic hydrocarbons as heavy as benzo(a)pyrene have been mobilized at low concentrations. Sorption of high-molecular-weight compounds has retarded their migration down the hydraulic gradient compared to low-molecular-weight compounds in the plume. Some simple phenolic compounds are being degraded to methane and carbon dioxide by bacteria under anaerobic conditions in the drift-PlattevilleSt. Peter aquifer system. Other low-molecular-weight aromatic compounds are apparently being degraded by aerobic bacteria at the periphery of the plume where oxygen is available. Intermediate degradation products such as volatile fatty acids are likely present, but complete conversion of the organic contaminants to innocuous inorganic substances has not been demonstrated. Near and south of 36th and Wooddale Avenues, contaminants enter the St. Peter aquifer where the Glenwood confining unit has been eroded in a buried bedrock valley. Contaminants previously entered the Prairie du Chien-Jordan aquifer through at least one multiaquif er well (W38). Other sources of contaminants and the low concentrations of contaminants hamper delineation of the maximum areal extent of contaminants that are resistant to biologic degradation. These biorefractory compounds will probably continue to migrate down the hydraulic gradients in the drift and Platteville and St. Peter aquifers. Of particular concern with respect to the health risk to humans are the polynuclear aromatic hydrocarbons, which are a major constituent of coal tar and are found in municipal wells near the site that are completed in the Prairie du Chien-Jordan aquifer. The Prairie du Chien-Jordan aquifer lies 250 to 500 feet below land surface and is relatively well protected from nearsurface sources of contamination by overlying rocks. However, the aquifer has been contaminated since at least 1932 because coal-tar derivatives have entered the aquifer through multiaquifer wells. The most significant single source of contamination in the aquifer is a well drilled on the site in 1917 (well W23) that has contained liquid coal-tar since at least 1958. The introduction, dissolution, and movement of this coal-tar in ground water has contaminated nearby municipal wells. The composition of the tar in well W23, and the ratio of concentrations of individual compounds in water from well W23 to those in municipal well SLP15, are consistent with known hydrologic, chemical, and biologic processes, and the conclusion that contaminants in well SLP15 are due primarily to contaminants introduced at well W23. Most of the major polynuclear aromatic hydrocarbons in the tar, although slightly soluble in water and strongly sorbed by aquifer materials, have moved greater distances at higher concentrations than have the lower-molecular-weight, more soluble compounds such as phenolic compounds and naphthalene. The latter are apparently being degraded by bacteria. The direction and rate of contaminant movement within the Prairie du Chien-Jordan aquifer changes with time because the ground-water-flow system continually adjusts to hydraulic stresses caused by ground-water withdrawals and flow through multiaquifer wells. Contaminants can move rapidly through the Prairie du Chien-Jordan because the upper part of the aquifer is a carbonate rock having fracture and solution-channel permeability, low effective porosity, and relatively small surface area for sorption. Consequently, the concentration and composition of contaminants in water pumped from individual industrial and municipal wells completed in the aquifer fluctuate with time. Although contaminants have been in the aquifer for at least 50 years and their spatial distribution is complex, concentrations remain highest near their points of introduction through multiaquifer wells near and on the site of the former plant. Contaminants reached the Ironton-Galesville aquifer through at least two deep multiaquifer wells (W23 and W38), but the extent of contamination in this aquifer, and in the underlying Mount Simon-Hinckley aquifer, is not known.

Minnesota↗

Fish-community composition in Ouleout Creek, in the vicinity of East Sidney Lake, Delaware County, New York, 2000

The U.S. Army Corps of Engineers, Baltimore District, has been conducting biological surveys of the inflow and outflow streams of East Sidney Lake since the early 1980's. These surveys are made to identify possible detrimental effects as well as benefits of the lake and to better understand the aquatic communities in the vicinity of the lake at the present and over time. The U.S. Army Corps of Engineers and the U.S. Geological Survey jointly conducted a survey of the fish communities upstream and downstream of the reservoir in Ouleout Creek in September 2000. The fish communities upstream and downstream were compared and any differences or similarities seen in the fish communities were noted. This study found the fish communities upstream and downstream of East Sidney Lake to be in good condition, with Index of Biotic Integrity (IBI) scores 4.5 upstream and 4.3 downstream. The habitat conditions of both reaches were of optimal quality, with a score of 18 upstream and 17 downstream as determined by use of the U.S. Environmental Protection Agency's Rapid Bioassessment Protocols, and are capable of supporting fish communities. The Shannon Index was 2.95 upstream and 2.61 downstream of the lake, indicating that both reaches are slightly impacted by species richness and individual evenness among the species. Downstream, the dominant taxa was twice that of the co-dominant taxa. The Jaccards Coefficient and the Index of Similarity statistically shows these communities are similar, with scores of 0.76 and 0.86, respectively. Of the 19 species captured downstream, 16 of those also were captured upstream.

Open-File Report↗

Rapid assessment of U.S. forest and soil organic carbon storage and forest biomass carbon sequestration capacity

This report provides results of a rapid assessment of biological carbon stocks and forest biomass carbon sequestration capacity in the conterminous United States. Maps available from the U.S. Department of Agriculture are used to calculate estimates of current organic carbon storage in soils (73 petagrams of carbon, or PgC) and forest biomass (17 PgC). Of these totals, 3.5 PgC of soil organic carbon and 0.8 PgC of forest biomass carbon occur on lands managed by the U.S. Department of the Interior (DOI). Maps of potential vegetation are used to estimate hypothetical forest biomass carbon sequestration capacities that are 3–7 PgC higher than current forest biomass carbon storage in the conterminous United States. Most of the estimated hypothetical additional forest biomass carbon sequestration capacity is accrued in areas currently occupied by agriculture and development. Hypothetical forest biomass carbon sequestration capacities calculated for existing forests and woodlands are within ±1 PgC of estimated current forest biomass carbon storage. Hypothetical forest biomass sequestration capacities on lands managed by the DOI in the conterminous United States are 0–0.4 PgC higher than existing forest biomass carbon storage. Implications for forest and other land management practices are not considered in this report. Uncertainties in the values reported here are large and difficult to quantify, particularly for hypothetical carbon sequestration capacities. Nevertheless, this rapid assessment helps to frame policy and management discussion by providing estimates that can be compared to amounts necessary to reduce predicted future atmospheric carbon dioxide levels.

Open-File Report↗

Spatial integration of biological and social objectives to identify priority landscapes for waterfowl habitat conservation

Waterfowl population management and habitat conservation compose one of the oldest and most successful adaptive management frameworks in the world. Since its inception, the North American Waterfowl Management Plan (NAWMP) has emphasized strategically targeted conservation investments in regions that most affect waterfowl population dynamics. By 2012, regional conservation had progressively become more science-based and strategic: many migratory bird partnerships had initiated or completed projects on mapping and modeling waterfowl distribution and abundances using geospatial techniques. However, when developing a map depicting and titled “Areas of Greatest Continental Significance to North American Ducks, Geese, and Swans” for the 2012 NAWMP Revision, waterfowl professionals articulated the need for improved decision frameworks and use of consistent datasets for refining large-scale spatial products depicting priority areas for waterfowl and people. This report describes a framework for developing a spatial value model to support the identification of North American geographies of importance to waterfowl during the breeding and non-breeding periods and to resource users who could potentially support (financially and (or) politically) waterfowl habitat conservation. Objectives used to identify priority geographies were determined through a collaborative process of the NAWMP Science Support Team, Priority Landscapes Committee (PLC), and other experts in the fields of waterfowl biology and ecology, environmental science, and human dimensions. ArcGIS Desktop was used as the platform for managing, analyzing, combining and displaying the spatial data as well as producing new data through spatial analysis functions. Thirty-eight spatial layers were developed, and several composite spatially explicit products (maps of North America) were produced based on PLC recommendations. The composite products have extensive similarities to the 2012 NAWMP map depicting areas of greatest continental significance to North American waterfowl. There are also some differences, especially in regions of the high Arctic and in Mexico. These differences between spatial value model maps and the 2012 NAWMP output likely arose from inclusion of social objectives, reduced dependence on expert opinion to generate abundance estimates, lack of population surveys in some regions and availability of expanded survey data in other regions, and use of model-based waterfowl population estimates for some unsurveyed areas. The structured decision-making framework application in this study is discussed, and the appropriate use of the products and their limitations are outlined. Additionally, options for future improvements are presented by identifying gaps in data collection, waterfowl-habitat association assumptions, and uncertainties related to social objectives. These spatial products are intended for use by national, regional, and province/state level wildlife professionals to aid their decisions in targeting waterfowl habitat conservation.

Open-File Report↗

Status of spectacled eiders (Somateria fischeri) on the Yukon-Kuskokwim Delta, Alaska, 2022—Testing and updating predictive models

The nesting biology and demography of spectacled eiders ( Somateria fischeri ) along the lower Kashunuk River on the Yukon-Kuskokwim Delta, Alaska, were studied from 1993 to 2002. This previous work demonstrated that the breeding population on the study area was declining, and demographic modeling predicted that the population would continue to decline from 2002 forward. The predicted decline was primarily because of lead shot in tundra wetlands in the area, exposure of nesting females to lead, resulting in low adult female survival. The model predicted that lead pellets already in wetlands would slowly settle beyond the foraging depth of eiders, and that, lead exposure rates would decline. The goal of this project was to test this prediction by revisiting the lower Kashunuk River study area in 2022 to (1) update previous datasets regarding demographic parameters and (2) validate (or refute) existing models relative to lead exposure rates and the effects of lead on population dynamics. In the summer of 2022, a total of 37 nests were found in a sub-area of the historical study area. Comparing to past efforts in this same sub-area, more nests were found than predicted but the proportion of nesting female spectacled eiders exposed to lead in 2022 (24.3 percent) was still similar to levels of exposure observed between 1994 and 2002 (28.5 percent). Thus, data from the 2022 survey suggests that the earlier decline in numbers of nesting spectacled eiders has reversed, but there has been little decrease in lead exposure over time.

Alaska↗

Design and methods of the U.S. Geological Survey Northeast Stream Quality Assessment (NESQA), 2016

During 2016, as part of the National Water-Quality Assessment Project (NAWQA), the U.S. Geological Survey conducted the Northeast Stream Quality Assessment (NESQA) to investigate stream quality in the northeastern United States. The goal of the NESQA was to assess the health of wadeable streams in the region by characterizing multiple water-quality factors that are stressors to aquatic life and by evaluating the relation between these stressors and the condition of biological communities. Urbanization, agriculture, and human modifications to streamflow are anthropogenic changes that greatly affect water quality in the region; consequently, the study design primarily selected sites and targeted stressors associated with these activities. The NESQA built on a prior NAWQA study conducted in the region in 2014, the Atlantic Highlands flow-ecology study, which investigated the effects of anthropogenically modified flows on aquatic biological communities in primarily forested watersheds. Land-cover data for the NESQA were used to identify and select sites within the region that had watersheds ranging in levels of urban and agricultural development. A total of 95 sites were selected: 67 on streams in watersheds representing a range of urban land use, 13 on streams in watersheds with some degree of agricultural land use, and 15 on streams in predominantly forested watersheds with little development. Depending on land-cover characteristics, sites were sampled weekly for metal and organic contaminants, nutrients, and sediment for either a 9-week period that began the week of June 6, 2016, or a 4-week period that begin the week of July 11, 2016. Beginning August 1, 2016, and for about 2 weeks, an ecological survey was conducted at every site to assess stream habitat, and algal, benthic invertebrate, and fish communities. Additional samples collected during the ecological surveys were streambed sediment for chemical analysis and toxicity testing, and fish tissue for mercury analysis. This report describes the various study components and methods of the NESQA and describes a precursor effort for the Atlantic Highlands flow-ecology study. Details are presented for measurements of water quality, sediment chemistry, streamflow, and ecological surveys of stream biota and habitat, as well as processes of sample analysis, quality assurance and quality control, and data management.

Open-File Report↗

Fish-community composition in Canacadea Creek, in the vicinity of Almond Lake, Allegany and Steuben counties, New York, 2000

The U.S. Army Corps of Engineers, Baltimore District, has been conducting biological surveys of the inflow and outflow streams of Almond Lake since the early 1980's. These surveys are made to identify possible detrimental effects as well as benefits of the reservoir and to better understand the aquatic communities in the vicinity of the lake at the present and over time. The U.S. Army Corps of Engineers and the U.S. Geological Survey jointly conducted a survey of the fish communities upstream and downstream of the lake in Canacadea Creek in September 2000. The fish communities upstream and downstream were compared and any differences or similarities seen in the communities were noted. This study found the fish communities to be in fair condition upstream and good condition downstream of Almond Lake, with Index of Biotic Integrity (IBI) scores of 3.5 and 5.0, respectively. The habitat conditions of both reaches were of suboptimal quality, with a score of 14 upstream and 15 downstream as determined by use of the U.S. Environmental Protection Agency's (USEPA) Rapid Bioassessment Protocols, and are capable of supporting fish communities. The Shannon Index indicates species richness and evenness and was 1.87 upstream and 3.22 downstream of the lake, indicating the upstream reach is severely impacted and the downstream reach appears to be not impacted. The Jaccards Coefficient and the Index of Similarity statistically show these communities are similar with scores of 0.55 and 0.71, respectively. Of the 12 species captured upstream, 11 of those also were captured downstream along with 8 other species for a total of 19 species downstream.

Open-File Report↗

Biological assessment of environmental flows for Oklahoma

Large-scale patterns in fish assemblage structure and functional groups are influenced by alterations in streamflow regime. In this study, we defined an objective threshold for alteration for Oklahoma streams using a combination of the expected range of 27 flow indices and a discriminant analysis to predict flow regime group. We found that fish functional groups in reference flow conditions had species that were more intolerant to flow alterations and preferences for stream habitat and faster flowing water. In contrast, altered sites had more tolerant species that preferred lentic habitat and slower water velocity. Ordination graphs of the presence and functional groups of species revealed an underlying geographical pattern roughly conforming to ecoregions, although there was separation between reference and altered sites within the larger geographical framework. Additionally, we found that reservoir construction and operation significantly altered fish assemblages in two different systems, Bird Creek in central Oklahoma and the Kiamichi River in southeastern Oklahoma. The Bird Creek flow regime shifted from a historically intermittent stream to one with stable perennial flows, and changes in fish assemblage structure covaried with changes in all five components of the flow regime. In contrast, the Kiamichi River flow regime did not change significantly for most flow components despite shifts in fish assemblage structure; however, most of the species associated with shifts in assemblage structure in the Kiamichi River system were characteristic of lentic environments and were likely related more to proximity of reservoirs in the drainage system than changes in flow. The spatial patterns in fish assemblage response to flow alteration, combined with different temporal responses of hydrology and fish assemblage structure at sites downstream of reservoirs, indicate that interactions between flow regime and aquatic biota vary depending on ecological setting. This supports the notion that regional variation in natural flow regimes could affect the development of flow recommendations.

Oklahoma↗

Plasticity of Least Tern and Piping Plover nesting behaviors in response to sand temperature

Birds that nest on the ground in open areas, such as Piping Plovers ( Charadrius melodus ) and Interior Least Terns ( Sternula antillarum athalassos ), are exposed to high temperatures in thermally stressful environments. As a result, some ground-nesting avian species have adapted behavioral strategies to maintain thermal regulation of eggs and themselves. We assessed the impact of sand temperature on shorebird nesting behaviors by installing video cameras and thermocouples at 52 Least Tern and 55 Piping Plover nests on the Missouri River in North Dakota during the 2014–2015 breeding seasons. Daily duration and frequency of shading behaviors exhibited a nonlinear relationship with temperature; therefore, we used segmented regressions to determine at what threshold temperature (mean temperature = 25.7 ⸰ C for shading behavior daily frequency and mean temperature = 25.1 ⸰ C for shading behavior daily duration) shorebird adults exhibited a behavioral response to rising sand temperatures. Daily nest attendance of both species decreased with increasing sand temperatures in our system. Frequency and duration of daily shading behaviors were positively correlated with sand temperatures above the temperature threshold. Piping Plovers exhibited more and longer shading behaviors above and below the temperature thresholds (below: frequency = 10.30 ± 1.69 se, duration = 7.29 min ± 2.35 se; above: frequency = 59.27 ± 6.87 se) compared to Least Terns (below: frequency = −1.37 ± 1.98 se, duration = −0.73 min ± 1.51 se; above: frequency = 31.32 ± 7.29 se). The effects of sand temperature on avian ground-nesting behavior will be critical to understand in order to adapt or develop recovery plans in response to climate change.

North Dakota↗

Range-wide greater sage-grouse hierarchical monitoring framework—Implications for defining population boundaries, trend estimation, and a targeted annual warning system

Incorporating spatial and temporal scales into greater sage-grouse ( Centrocercus urophasianus ) population monitoring strategies is challenging and rarely implemented. Sage-grouse populations experience fluctuations in abundance that lead to temporal oscillations, making trend estimation difficult. Accounting for stochasticity is critical to reliably estimate population trends and investigate variation related to deterministic factors on the landscape, which are amenable to management action. Here, we describe a novel, range-wide hierarchical monitoring framework for sage-grouse centered on four objectives: (1) create a standardized database of lek counts, (2) develop spatial population structures by clustering leks, (3) estimate spatial trends at different temporal extents based on abundance nadirs (troughs), and (4) develop a targeted annual warning system to help inform management decisions. Using automated and repeatable methods (software), we compiled a lek database (as of 2019) that contained 262,744 counts and 8,421 unique lek locations from disparate state data. The hierarchical population units (clusters) included 13 nested levels, identifying biologically relevant units and population structure that minimized inter-cluster sage-grouse movements. With these products, we identified spatiotemporal variation in trends in population abundance using Bayesian state-space models. We estimated 37.0, 65.2, and 80.7-percent declines in abundance range-wide during short (17 years), medium (33 years), and long (53 years) temporal scales, respectively. However, some areas exhibited evidence of increasing trends in abundance in recent decades. Models predicted 12.3, 19.2, and 29.6 percent of populations (defined as clusters of neighboring leks) consisted of over 50-percent probability of extirpation at 19, 38, and 56-year projections from 2019, respectively, based on averaged annual rate of change in apparent abundance across two, four, and six oscillations (average period of oscillation is 9.4 years). At the lek level, models predicted 45.7, 60.1, and 78.0 percent of leks with over 50-percent extirpation probabilities over the same time periods, respectively, mostly located on the periphery of the species’ range. The targeted annual warning system automates annual identification of local populations exhibiting asynchronous decline relative to regional population patterns using simulated management actions and an optimization algorithm for evaluating range-wide stabilization of population abundance. In 2019, approximately 3.2 percent of leks and 2.0 percent of populations were identified by the targeted annual warning system for management intervention range-wide.

California, Colorado, Idaho, Montana, Nevada, Nort↗

Biological and associated water-quality data for lower Olmos Creek and upper San Antonio River, San Antonio, Texas, April - September 1989

Biological and associated water-quality data were collected from lower Olmos Creek and upper San Antonio River in San Antonio, Texas, during April-September 1989. Benthic macroinvertebrate, periphyton, and phytoplankton communities were sampled at three sites along the Olmos Creek/San Antonio River system. Total mean densities of benthic macroinvertebrates for the three sites ranged from 670 to 10,000 organisms per square meter. The most abundant macroinvertebrates were the class Insecta (insects). Total densities of periphyton ranged from 2,900 to 110,000 cells per square millimeter. Cyanophyta (blue-green algae) and Bacillariophyta (diatoms) were the predominant periphyton organisms. Total densities of phyto- plankton ranged from 5,000 to 47,000 cells per square milliliter. Blue-green algae accounted for more than one- half of the phytoplankton in each sample. Hardness ranged from 160 to 250 milligrams per liter as calcium carbonate, and alkalinity ranged from 130 to 220 milligrams per liter as calcium carbonate. The largest dissolved nitrite concentration was 0.038 milligram per liter. The largest total phosphorus concentration was 0.150 milligram per liter, over one-half of which was dissolved orthophosphate. Total aluminum and total iron were the only trace elements in water to exceed the reporting threshold by large concen- trations. Total aluminum concentrations ranged from 70 to 280 micrograms per liter, and total iron concentrations ranged from 70 to 340 micrograms per liter. Lead was the most prominent trace element in bottom-material samples, with concentrations ranging from 30 to 230 micrograms per gram.

Open-File Report↗

Biological Evaluations of an Off-Stream Channel, Horizontal Flat-Plate Fish Screen-The Farmers Screen

Screens are commonly installed at water diversion sites to reduce entrainment of fish. Recently, the Farmers Irrigation District in Hood River, Oregon, developed a new flat-plate screen design that offers passive operation and may result in reduced operation and installation costs to irrigators. To evaluate the performance (its biological effect on fish) of this type of screen, two size classes of juvenile coho salmon (Oncorhynchus kistuch) were released over a small version of this screen in the field-the Herman Creek screen. The performance of the screen was evaluated over a range of inflow [0.02 to 0.42 m3/s (cubic meters per second)] and diversion flows (0.02 to 0.34 m3/s) at different weir wall heights. The mean approach velocities for the screen ranged from 0 to 5 cm/s (centimeters per second) and mean sweeping velocities ranged from 36 to 178 cm/s. Water depths over the screen surface ranged from 1 to 25 centimeters and were directly related to weir wall height and inflow. Passage of juvenile coho salmon over the screen under a variety of hydraulic conditions did not severely injure them or cause delayed mortality. For all fish, the mean percentage of body surface area that was injured after passage over the screen ranged from about 0.4 to 3.0%. This occurred even though many fish contacted the screen surface during passage. No fish were observed becoming impinged on the screen surface (greater than 1 second contact with the screen). When operated within its design criteria (diversion flows of about 0.28 m3/s), the screen provided safe and effective downstream passage of juvenile salmonids under a variety of hydraulic conditions. However, we do not recommend operating the screen at inflows less than 0.14 m3/s (5 ft3/s) because water depth can get quite shallow and the screen can completely dewater, particularly at very low flows.

Open-File Report↗

California State Waters Map Series — Offshore of San Francisco, California

In 2007, the California Ocean Protection Council initiated the California Seafloor Mapping Program (CSMP), designed to create a comprehensive seafloor map of high-resolution bathymetry, marine benthic habitats, and geology within California’s State Waters. The CSMP approach is to create highly detailed seafloor maps through collection, integration, interpretation, and visualization of swath sonar data, acoustic backscatter, seafloor video, seafloor photography, high-resolution seismic-reflection profiles, and bottom-sediment sampling data. The map products display seafloor morphology and character, identify potential marine benthic habitats, and illustrate both the surficial seafloor geology and shallow (to about 100 m) subsurface geology. The Offshore of San Francisco map area is centered on the City of San Francisco and the Golden Gate channel, a waterway that connects the Pacific Ocean to the San Francisco Bay between the Marin Headlands and San Francisco Peninsula. The San Francisco Bay Area is the second-largest urban area on the U.S. West Coast with a combined population of over seven million. The bay supports several major cargo ports and the Port of San Francisco’s Fisherman’s Wharf is a major center for Northern California’s commercial and sport fishing fleets. The coastal part of the map area predominantly consists of high bluffs and vertical sea cliffs shaped by uplift and erosion of the Marin Headlands and San Francisco Peninsula east of the San Andreas and San Gregorio Fault Zones. The seafloor in the map area extends from the shoreline and western end of the Golden Gate channel to water depths of about 30 to 50 m, except for the San Andreas graben area, where water depths reach 75 m. Sea-level rise, tidal currents, and tectonics have shaped bathymetry in the map area. During the Last Glacial Maximum, Sea level was about 125 m lower than present day and the shoreline was more than 45 km west of San Francisco near the Farallon Islands. At that time, the map area was part of a large alluvial plain connected to a drainage basin that included much of California’s Central Valley. A river system flowed westward through the narrows of the Golden Gate channel and an alluvial valley bounded to the north and south by bedrock highlands, including the present-day Pacifica-Pescadero and Bolinas shelves. Rising seas entered the Golden Gate about 11,000 to 10,000 years ago and subsequent marine flooding led to progressive growth of the San Francisco Bay. Strong tidal currents, accelerating through the relatively narrow Golden Gate, have scoured the bedrock channel to a depth of 113 m. East and west of the channel, tidal currents decelerate and form large fields of sand waves. Offshore of the Marin Headlands, eastward transfer of right-lateral fault slip in a complex of faults northwest of the map area has caused extension and the formation of a sediment basin called the San Andreas graben on the continental shelf. The accommodation space created by extension on the shelf and the proximity to sediment transported to the ocean through San Francisco Bay results in a sand-dominated offshore shelf environment. Seafloor habitats in the Offshore of San Francisco map area comprise significant sand-dominated sediment habitat with sand wave and ripple bedforms indicative of high wave and current energy. North of the Golden Gate, biological productivity resulting from coastal upwelling supports populations of Sooty Shearwater, Western Gull, Common Murre, Cassin’s Auklet, and many other less populous bird species. In addition, an observable recovery of Humpback and Blue Whales has occurred in the area; both species are dependent on coastal upwelling to provide nutrients. For the first time in 65 years, Pacific Harbor Porpoise returned to San Francisco Bay in 2009. On the coast north of the Golden Gate, the large extent of exposed inner shelf bedrock supports large forests of “bull kelp,” which is well adapted for high wave-energy environments. Common fish species found in the kelp beds and rocky reefs include painted greenling, kelp greenling, lingcod, and several varieties of rockfish. Circulation over the continental shelf in the Offshore of San Francisco map area is dominated by the southward-flowing California Current, an eastern limb of the North Pacific Gyre that flows from Oregon to Baja California. At its midpoint offshore of central California, the California Current transports subarctic surface waters southeastward, about 150 to 1,300 km from shore. Seasonal northwesterly winds that are, in part, responsible for the California Current, generate coastal upwelling. Ocean temperatures offshore of central California have increased over the past 50 years, driving an ecosystem shift from the productive subarctic regime towards a depopulated subtropical environment.

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Annotated bibliography of scientific research on greater sage-grouse published since January 2015

The greater sage-grouse ( Centrocercus urophasianus ; hereafter GRSG) has been a focus of scientific investigation and management action for the past two decades. The 2015 U.S. Fish and Wildlife Service listing determination of “not warranted” was in part due to a large-scale collaborative effort to develop strategies to conserve GRSG populations and their habitat and to reduce threats to both. New scientific information augments existing knowledge and can help inform updates or modifications to existing plans for managing GRSG and sagebrush ecosystems. However, the sheer number of scientific publications can be a challenge for managers tasked with evaluating and determining the need for potential updates to existing planning documents. To assist in this process, the U.S. Geological Survey (USGS) has reviewed and summarized the scientific literature published since January 1, 2015. To identify articles and reports published about GRSG, we first conducted a structured search of three reference databases (Web of Science, Scopus, and Google Scholar) using the search term “greater sage-grouse.” We refined the initial list of products by (1) removing duplicates, (2) excluding products that were not published as research or scientific review articles in peer-reviewed journals or as formal government technical reports, and (3) retaining only those products for which GRSG or their habitat was a research focus. We summarized the contents of each product by using a consistent structure (background, objectives, methods, location, findings, and implications) and assessed the content of each product relevant to a list of 31 management topics. These topics include GRSG biology and habitat characteristics along with potential management actions, land uses, and environmental factors related to GRSG management and conservation. We also noted which articles/reports created new geospatial data. The final search was conducted on January 6, 2018, and application of our criteria resulted in the inclusion of 169 published products (2 of these products were published corrections to journal articles). The management topics most commonly addressed were GRSG behavior or demographics and GRSG habitat selection or habitat characteristics at broad or site scales. Few products addressed captive breeding, recreation, wild horses and burros, and range management structures (including fences). We include in this annotated bibliography the full citation, product summary, and management topics addressed by each product. The online version of this bibliography ( https://apps.usgs.gov/gsgbib/index.php ) is searchable by topic and location and includes links to the original publications. A substantial body of literature has been compiled based on research explicitly related to the conservation, management, monitoring, and assessment of GRSG. These studies may inform planning and management actions that seek to balance conservation, economic, and social objectives and manage diverse resource uses and values across the western United States. The review process for this product included requesting input on each summary from one or more authors of the original peer-reviewed article or report and a formal review of the entire document by three independent reviewers and, subsequently, the USGS Bureau Approving Official. This process is consistent with USGS Fundamental Science Practices.

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Field screening of water quality, bottom sediment, and biota associated with irrigation drainage, Wind River Indian Reservation, Wyoming, 1992-93

Physical, chemical, and biological data were collected in 1992-93 from irrigation drainage areas and wetlands of the Wind River Federal Irrigation Project, Wind River Indian Reservation, Wyoming. Most samples collected had concentrations of chemical constituents less than the established levels of concern for water, bottom sediment, and biota. In the Little Wind Unit irrigation area, however, selenium and mercury concentrations in water exceeded criteria established by the U.S. Environmental Protection Agency. Six water samples analyzed from the Little Wind Unit in 1993 had selenium concentrations that equaled or exceeded 5 micrograms per liter. Concentrations of mercury in water were 0.1 micrograms per liter or less, except at four sites: one sample collected in 1993 from Sharp Nose Draw (4.9 micrograms per liter) and three samples collected in 1992 from Little Wind Unit and Johnstown Unit (0.2 micrograms per liter). Mercury concentrations in all bottom-sediment samples were less than 0.02 micrograms per liter, except at Sharp Nose Pond where a concentration of 0.02 micrograms per liter was measured. Selenium concentrations in some aquatic vegetation, inverte- brates, fish, bird eggs, and bird livers collected from the Little Wind Unit in 1993 exceeded established levels of concern. At Goose Pond and Sharp Nose Pond, selenium in the livers of five bird samples collected exceeded the 10 micrograms per gram level associated with reproductive failure in aquatic birds. Mercury concentrations in the livers of birds sampled at Sharp Nose Pond also were greater than suggested levels in dietary items for the protection of sensitive species of mammals and birds that regularly consume aquatic organisms.

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