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USGS2014

Evaluating the predictive performance of empirical estimators of natural mortality rate using information on over 200 fish species

Many methods have been developed in the last 70 years to predict the natural mortality rate, M , of a stock based on empirical evidence from comparative life history studies. These indirect or empirical methods are used in most stock assessments to (i) obtain estimates of M in the absence of direct information, (ii) check on the reasonableness of a direct estimate of M , (iii) examine the range of plausible M estimates for the stock under consideration, and (iv) define prior distributions for Bayesian analyses. The two most cited empirical methods have appeared in the literature over 2500 times to date. Despite the importance of these methods, there is no consensus in the literature on how well these methods work in terms of prediction error or how their performance may be ranked. We evaluate estimators based on various combinations of maximum age ( t max ), growth parameters, and water temperature by seeing how well they reproduce >200 independent, direct estimates of M . We use tenfold cross-validation to estimate the prediction error of the estimators and to rank their performance. With updated and carefully reviewed data, we conclude that a t max -based estimator performs the best among all estimators evaluated. The t max -based estimators in turn perform better than the Alverson–Carney method based on t max and the von Bertalanffy K coefficient, Pauly’s method based on growth parameters and water temperature and methods based just on K . It is possible to combine two independent methods by computing a weighted mean but the improvement over the t max -based methods is slight. Based on cross-validation prediction error, model residual patterns, model parsimony, and biological considerations, we recommend the use of a t max -based estimator ( M = 4.899 t max − 0.916 "> M = 4.899 t − 0.916 max M=4.899tmax−0.916 , prediction error = 0.32) when possible and a growth-based method ( M = 4.118 K 0.73 L ∞ − 0.33 "> M = 4.118 K 0.73 L − 0.33 ∞ M=4.118K0.73L∞−0.33 , prediction error = 0.6, length in cm) otherwise.

ICES Journal of Marine Science↗

USGS2018

Groundwater modeling

The state of the science and practice in groundwater modeling brings to mind highly sophisticated computer models that are running in parallel on many multi-processor machines. These models are expected to incorporate many different processes of both saturated and unsaturated groundwater flow and transport and possibly the media to which it connects, like surface waters and the atmosphere. We are increasingly aware we cannot study groundwater flow in isolation if we are to make useful predictions of, for instance, the impacts of climate change on the groundwater regime. We have come a long way. Today we are no longer limited to equations for flow toward a well, perhaps near an infinitely long straight canal (method of images), to sandbox models in the laboratory, or to simple steady state models of flow in a single aquifer. We now have computer models that solve groundwater flow and transport in multi-aquifer settings under transient conditions and with a user-friendly graphical user interface that allows widespread use. Additionally, multi-media models are now leaving the research environment and becoming available to mainstream consultants. So in that sense the science of groundwater modeling has matured. The practice of groundwater modeling, however, has also matured. We have come to realize that model output, being a necessary simplification of an unknowably complex natural world, has inherent limitations. That is, a model of reality is not reality itself. There is uncertainty associated with all facets of our model—parameterization, aquifer geometry and discretization, boundary conditions, and future hydrologic drivers such as future pumping regimes and climates. Today a model is now more appropriately seen as a tool that provides a quantitative framework to make supportable forecasts rather than an oracle that gives us all the answers. In this chapter we set out to briefly review the state of the science and practice in modeling. In doing so, we augment existing assessments from the journal Groundwater (e.g., Hunt and Zheng 2012; Langevin and Panday 2012; Molz 2017a,b; White 2017), specifically in terms of modeling approach. An effective modeling approach is critical. If a modeler does not decompose the societal problem correctly, the model will not be fit-for-purpose, no matter how sophisticated the code’s capabilities. Moreover, capabilities of codes will be ever improving; good modeling practices have a timelessness that is more robust. How best to decompose the problem and provide models that are accepted? We lay out here some approaches for today’s applied groundwater modeling. Specifically, we suggest: (1) a step-wise modeling process; (2) including a two-dimensional areal model within this process; (3) keeping abreast of industry standards; and (4) ways to increase acceptance of the models we produce.

Book chapter↗

USGS2025

Synthetic microfibers are ubiquitous in benthic algae from the Laurentian Great Lakes

Synthetic microfibers are a class of microplastics routinely released into environmental media from domestic laundry and wastewater treatment plant effluent. Areas of high human population density discharge immense amounts of synthetic microfibers that pollute and accumulate in sediments, surface waters, algae, and other parts of the ecosystem. Synthetic microfibers are abundant in the Laurentian Great Lakes of North America, but their movement and fate are not well understood. Macroalgae effectively sequester microfibers; however, it is unknown if quantities of synthetic microfibers differ in benthic algae of the Great Lakes based on human population density or algal type (such as Cladophora or charophytes). Presented here is a 4-year study that investigated benthic algae samples from four of the Laurentian Great Lakes: Lakes Michigan, Huron, Ontario, and Erie. Synthetic microfibers were isolated and quantified in the algal samples, and values were analyzed with respect to algal type, lake, and population density. The average estimated number of synthetic microfibers per kg (dry weight) of benthic algae in each lake ranged from 1.6 × 10 4 to 2.0 × 10 4 . Microscopic analysis suggested a possible interaction between epiphytic diatoms and benthic macroalgae ( Cladophora ), which may help to explain the ability of the algae to sequester microfibers regardless of algal type. The results also suggest a lack of correlation between human population density and number of synthetic microfibers in benthic algae, which could imply facile movement and distribution of microfibers in large bodies of water, that includes the aquatic food web of macroinvertebrates and fish communities.

Lake Erie, Lake Huron, Lake Michigan, lake Ontario↗

USGS1989

Removing volatile contaminants from the unsaturated zone by inducing advective air-phase transport

Organic liquids inadvertently spilled and then distributed in the unsaturated zone can pose a long-term threat to ground water. Many of these substances have significant volatility, and thereby establish a premise for contaminant removal from the unsaturated zone by inducing advective air-phase transport with wells screened in the unsaturated zone. In order to focus attention on the rates of mass transfer from liquid to vapour phases, sand columns were partially saturated with gasoline and vented under steady air-flow conditions. The ability of an equilibrium-based transport model to predict the hydrocarbon vapor flux from the columns implies an efficient rate of local phase transfer for reasonably high air-phase velocities. Thus the success of venting remediations will depend primarily on the ability to induce an air-flow field in a heterogeneous unsaturated zone that will intersect the distributed contaminant. To analyze this aspect of the technique, a mathematical model was developed to predict radially symmetric air flow induced by venting from a single well. This model allows for in-situ determinations of air-phase permeability, which is the fundamental design parameter, and for the analysis of the limitations of a single well design. A successful application of the technique at a site once contaminated by gasoline supports the optimism derived from the experimental and modeliing phases of this study, and illustrates the well construction and field methods used to document the volatile contaminant recovery.

Journal of Contaminant Hydrology↗

USGS2002

Porometric properties of siliciclastic marine sand: A comparison of traditional laboratory measurements with image analysis and effective medium modeling

During the 1999 sediment acoustics experiment (SAX99), porometric properties were measured and predicted for a well sorted, medium sand using standard laboratory geotechnical methods and image analysis of resin-impregnated sediments. Sediment porosity measured by laboratory water-weight-loss methods (0.372 ?? 0.0073 for mean ??1 standard deviation) is 0.026 lower than determined by microscopic image analysis of resin-impregnated sediments (0.398 ?? 0.029). Values of intrinsic permeability (m2) determined from constant-head permeameter measurements (3.29 ?? 10-11 ?? 0.60 ?? 10-11) and by microscopic image analysis coupled with effective medium theory modeling (2.78 ?? 10-11 ?? 1.01 ?? 10-11) are nearly identical within measurement error. The mean value of tortuosity factor measured from images is 1.49 ?? 0.09, which is in agreement with tortuosity factor determined from electrical resistivity measurements. Slight heterogeneity and anisotropy are apparent in the top three centimeters of sediment as determined by image-based porometric property measurements. However, the overall similarity for both measured and predicted values of porosity and permeability among and within SAX99 sites indicates sediments are primarily homogeneous and isotropic and pore size distributions are fairly uniform. The results indicate that an effective medium theory technique and two-dimensional image analysis accurately predicts bulk permeability in resin-impregnated sands.

IEEE Journal of Oceanic Engineering↗

USGS1989

The campi flegrei (Italy) geothermal system: A fluid inclusion study of the mofete and San Vito fields

A fluid inclusion study of core from the Mofete 1, Mofete 2, Mofete 5, San Vito 1, and San Vito 3 geothermal wells (Campi Flegrei, Campania, Italy) indicates that the hydrothermal minerals were precipitated from aqueous fluids (??CO2) that were moderately saline (3-4 wt.% NaCl equiv.) to hypersaline (> 26 wt.% NaCl equiv.) and at least in part, boiling. Three types of primary fluid inclusions were found in authigenic K-feldspar, quartz, calcite, and epidote: (A) two-phase [liquid (L) + vapor (V)], liquid-rich inclusions with a range of salinity; (B) two-phase (L + V), vaporrich inclusions with low salinity; and (C) three-phase [L + V + crystals (NaCL)], liquid-rich inclusions with hypersalinity. Results of microthermometric and crushing studies are reported for twenty drill core samples taken from the lower portions of the five vertical wells. Data presented for selected core samples reveal a general decrease in porosity and increase in bulk density with increasing depth and temperature. Hydrothermal minerals commonly fill fractures and pore-spaces and define a zonation pattern, similar in all five wells studied, in response to increasing depth (pressure) and temperature. A greenschist facies assemblage, defined by albite + actinolite, gives way to an amphibolite facies, defined by plagioclase (andesine) + hornblende, in the San Vito 1 well at about 380??C. The fluid inclusion salinity values mimic the saline and hypersaline fluids found by drilling. Fluid inclusion V/L homogenization temperatures increase with depth and generally correspond to the extrapolated down-hole temperatures. However, fluid inclusion data for Mofete 5 and mineral assemblage data for San Vito 3, indicate fossil, higher-temperature regimes. A limited 87Sr/86Sr study of leachate (carbonate) and the leached cores shows that for most samples (except San Vito 3) the carbonate deposition has been from slightly 87Sr-enriched fluids and that Sr isotopic exchange has been incomplete. However, San Vito 3 cores show an approach to fluid/rock Sr equilibrium with a fluid similar to modern ocean water in 87Sr/86Sr ratio. The Campi Flegrei volcanic system has evolved undersaturated products, mostly trachyte, and defines a large (??? 12 km) caldera. The hydrothermal system developed in this location can be used as an analog for fossil systems in similar trachytic environments. The potential for ore mineralization is expressed by the recognition, from fluid inclusion and drilling data, of ore-forming environments such as boiling and brine stratification. ?? 1989.

Journal of Volcanology and Geothermal Research↗

USGS2008

Pesticide fate and transport throughout unsaturated zones in five agricultural settings, USA

P esticide transport through the unsaturated zone is a function of chemical and soil characteristics, application, and water recharge rate. The fate and transport of 82 pesticides and degradates were investigated at five different agricultural sites. Atrazine and metolachlor, as well as several of the degradates of atrazine, metolachlor, acetochlor, and alachlor, were frequently detected in soil water during the 2004 growing season, and degradates were generally more abundant than parent compounds. Metolachlor and atrazine were applied at a Nebraska site the same year as sampling, and focused recharge coupled with the short time since application resulted in their movement in the unsaturated zone 9 m below the surface. At other sites where the herbicides were applied 1 to 2 yr before sampling, only degradates were found in soil water. Transformations of herbicides were evident with depth and during the 4-mo sampling time and reflected the faster degradation of metolachlor oxanilic acid and persistence of metolachor ethanesulfonic acid. The fraction of metolachlor ethanesulfonic acid relative to metolachlor and metolachlor oxanilic acid increased from 0.3 to > 0.9 at a site in Maryland where the unsaturated zone was 5 m deep and from 0.3 to 0.5 at the shallowest depth. The flux of pesticide degradates from the deepest sites to the shallow ground water was greatest (3.0–4.9 μmol m −2 yr −1 ) where upland recharge or focused flow moved the most water through the unsaturated zone. Flux estimates based on estimated recharge rates and measured concentrations were in agreement with fluxes estimated using an unsaturated-zone computer model (LEACHM).

Journal of Environmental Quality↗

USGS1989

The geology, botany and chemistry of selected peat-forming environments from temperate and tropical latitudes

Peat has been studied in several geologic settings: (1) glaciated terrain in cold temperate Maine and Minnesota, U.S.A.; (2) an island in the Atlantic Ocean off the coast of Maine, where sea level is rising; (3) the warm temperate U.S. Atlantic and Gulf Coastal Plains, where sea level has changed often; and (4) the tropical coast of Sarawak, Malaysia, and the tropical delta of the Batang Hari River, Sumatra, Indonesia. Most of these deposits are domed (ombrotrophic or partly ombrotrophic) bogs in which peat accumulation continued above the surface of the surrounding soil. However, the bogs of the U.S. Atlantic and Gulf Coastal Plains are comparatively not as domed, and many have almost level surfaces. In some bogs, aquatic or semi-aquatic plant materials accumulated, replaced water in the depressions, and formed a surface on which marsh or swamp vegetation could subsequently live, die, and accumulate. In others, the plant materials accumulated initially on level silt or sand surfaces supporting marshes or swamps. As the peat dome formed, plants growing on it changed from luxuriant ones near the base of the dome, where nutrients were brought into the bog by surface and ground water, to stunted ones at the top of the dome, where the raised bogs are fed by nutrient-poor precipitation. The physical and chemical changes that take place in the sequence of environments from the pond stage of deposit development, through the grassy marsh stage, through the forested swamp stage, and finally through the heath dome stage can be measured in terms of acidity and ash, volatile matter, carbon, hydrogen, nitrogen, sulfur and oxygen contents, as well as in the kind and distribution of trace elements. The organic and inorganic contents of the deposits relate to geomorphology, and geomorphology relates to their settings. As models of coal formation, some domed peat deposits may help in solving problems of distribution and character of ancient coal beds. But clearly not all peat deposits are precursors of coal. Most Holocene peat deposits are subject to destruction by erosion, fire and decomposition through microbial and chemical oxidation before burial. The best environments for coal precursors have biomass accumulation, a continuously rising water table within the mass, and minimum influx of clay and silt until preservation by burial. The most suitable settings for future economic coal deposits are domed bogs that accumulate thick, widespread peat having low ash and low sulfur contents. The ombrotrophic peat deposits of tropical Sarawak and Sumatra are thick and extensive, contain low-ash and low-sulfur peat, and have high heating values. They are considered to be the best tropical coal analogs because of their extent and chances of preservation; the base of the peat is below adjacent river levels, and chemical and structural conditions are favorable for accumulation.

International Journal of Coal Geology↗

USGS2020

Machine-learning models to map pH and redox conditions in groundwater in a layered aquifer system, Northern Atlantic Coastal Plain, eastern USA

Study region The study was conducted in the Northern Atlantic Coastal Plain aquifer system, in the eastern USA. Study focus Groundwater pH and redox conditions are fundamental chemical characteristics controlling the distribution of many contaminants of concern for drinking water or the ecological health of receiving waters. In this study, pH and redox conditions were modeled and mapped in a complex, layered aquifer system. Machine-learning methods (boosted regression trees) were applied to data from 3000 to 5000 wells. Predicted pH and the probability of anoxic conditions, defined by three thresholds of dissolved oxygen (0.5, 1, and 2 mg/L), were mapped at the 1-km 2 scale for each of 10 regional aquifer layers. New Hydrological Insights for the Region Maps depict the extent of acidic groundwater and oxic conditions in the shallow, unconfined surficial aquifer and in unconfined, recharge-proximal areas of underlying aquifers, in contrast to alkaline and anoxic groundwater elsewhere. Geographic patterns and influential predictors–including elevation, overlying confining-units thickness, and simulated groundwater age and flux–are consistent with prior understanding of the processes controlling pH and redox in the aquifer system. The model-based maps support robust estimates of aquifer proportions, either areal or volumetric, likely to contain groundwater of a specified quality or be vulnerable to specific pH- or redox-sensitive contaminants. The machine-learning methods were an effective tool to map groundwater quality at the regional scale.

New Jersey, Maryland, Delaware, Virginia↗

USGS2017

New insights into nitrate dynamics in a karst groundwater system gained from in situ high-frequency optical sensor measurements

Understanding nitrate dynamics in groundwater systems as a function of climatic conditions, especially during contrasting patterns of drought and wet cycles, is limited by a lack of temporal and spatial data. Nitrate sensors have the capability for making accurate, high-frequency measurements of nitrate in situ, but have not yet been evaluated for long-term use in groundwater wells. We measured in situ nitrate continuously in two groundwater monitoring wells —one rural and one urban—located in the recharge zone of a productive karst aquifer in central Texas in order to resolve changes that occur over both short-term (hourly to daily) and long-term (monthly to yearly) periods. Nitrate concentrations, measured as nitrate-nitrogen in milligrams per liter (mg/L), during drought conditions showed little or no temporal change as groundwater levels declined. During aquifer recharge, extremely rapid changes in concentration occurred at both wells as documented by hourly data. At both sites, nitrate concentrations were affected by recharging surface water as evidenced by nitrate concentrations in groundwater recharge (0.8–1.3 mg/L) that were similar to previously reported values for regional recharging streams. Groundwater nitrate concentrations responded differently at urban and rural sites during groundwater recharge. Concentrations at the rural well (approximately 1.0 mg/L) increased as a result of higher nitrate concentrations in groundwater recharge relative to ambient nitrate concentrations in groundwater, whereas concentrations at the urban well (approximately 2.7 mg/L) decreased as a result of the dilution of higher ambient nitrate concentrations relative to those in groundwater recharge. Notably, nitrate concentrations decreased to as low as 0.8 mg/L at the urban site during recharge but postrecharge concentrations exceeded 3.0 mg/L. A return to higher nitrate concentrations postrecharge indicates mobilization of a localized source of elevated nitrate within the urbanized area of the aquifer. Changes in specific conductance were observed at both sites during groundwater recharge, and a significant correlation between specific conductance and nitrate (correlation coefficient [R] = 0.455) was evident at the urban site where large (3-fold) changes in nitrate occurred. Nitrate concentrations and specific conductance measured during a depth profile indicated that the water column was generally homogeneous as expected for this karst environment, but changes were observed in the most productive zone of the aquifer that might indicate some heterogeneity within the complex network of flow paths. Resolving the timing and magnitude of changes and characterizing fine-scale vertical differences would not be possible using conventional sampling techniques. The patterns observed in situ provided new insight into the dynamic nature of nitrate in a karst groundwater system.

Texas↗

USGS1984

Causes of acidification of four streams on Laurel Hilld in southwestern Pennsylvania

Atmospheric deposition, soils developed from bedrock, a natural bog, gas wells, and a ski area were all investigated as possible sources of water quality degradation for four streams on Laurel Hill in southwestern Pennsylvania where fish kills have been reported since 1960. An intensive study of the chemistry of atmospheric deposition, soil leachate, and stream water and fish populations was conducted on these basins during 1980–1981 with emphasis on dormant season periods with runoff from snowmelt and rain. Although bedrock geology was found to control the natural buffering capacity of these streams, only acid precipitation could be linked to sharp drops in pH and increases in total Al concentrations observed during stormflows in the poorly buffered streams. Three poorly buffered streams exhibited drops to pH 4.4 to 4.5 and increases in total Al concentrations up to 1.5 mg/L during observed peak flows. Mineral soil leachate from the three major soil series on the basins during this time exhibited a low pH of 4.3 and mean total Al concentrations of 3.6 mg/L, indicating stream response during storms was closely linked to chemistry of soil leachate. Poorly buffered streams did not support reproducing populations of trout ( Salmonidae sp.) or other fishes. In contrast, one well-buffered stream (20 mg/L CaCO 3 ) exhibited drops to pH 5.5 during peak flow and supported reproducing trout and sculpin ( Cottus bairdi ) populations. The acidification of the four streams studied was attributed to atmospheric deposition.

Journal of Environmental Quality↗

USGS2026

Suspended-sediment and phosphorus response in a fire-affected central Montana headwater catchment

Purpose Eutrophication and nuisance filamentous algal blooms (i.e. Cladophora ) are increasingly common occurrences throughout much of the western United States. Wildfire may be contributing to the frequency and magnitude of algal blooms through excess sediment and nutrient loading to streams and rivers. Our objective was to evaluate the effects the 2021 Woods Creek Fire had on sediment yields and phosphorus (total and bioavailable) partitioning in Camas Creek, a major tributary to the Smith River in Montana where Cladophora are now consistently reaching nuisance levels. Methods We collected water quality samples during snowmelt pulsing events as well as fixed interval sampling using an established U.S. Geological Survey stream gage instrumented with a continuous water quality sonde and an automatic peristaltic pump sampler. Water samples were processed for total phosphorus (TP), sediment-bound bioavailable phosphorus (S-BioP), soluble reactive phosphorus (SRP), and suspended sediment concentrations and were evaluated using linear regression and other nonparametric statistical tests. Continuous turbidity and streamflow were evaluated using hysteresis analysis to determine sediment sourcing and connectivity. Results We found that the Woods Creek Fire did not significantly influence TP and S-BioP in Camas Creek. However, there was a significant increase in SRP and turbidity in both postfire years (2022 and 2023). Hysteresis analysis of 91 delineated events indicated positive (clockwise) hysteresis was the dominant event pattern during the snowmelt period. This may indicate a lower hillslope to channel connectivity, with the major sediment supply originating from the channel and/or riparian areas. Conclusion Results from this study demonstrate the benefits of combining discrete water quality samples with high-frequency turbidity sensors to characterize postfire sediment and phosphorus dynamics. While a lack of postfire response in TP and S-BioP is contrary to many other studies, our findings highlight the role climate and catchment morphology play in attenuating a disturbance effect.

Montana↗

USGS2006

Pleistocene corals of the Florida keys: Architects of imposing reefs - Why?

Five asymmetrical, discontinuous, stratigraphically successive Pleistocene reef tracts rim the windward platform margin off the Florida Keys. Built of large head corals, the reefs are imposing in relief (???30 m high by 1 km wide), as measured from seismic profiles. Well dated to marine oxygen isotope substages 5c, 5b, and 5a, corals at depth are inferred to date to the Stage 6/5 transition. The size of these reefs attests to late Pleistocene conditions that repeatedly induced vigorous and sustained coral growth. In contrast, the setting today, linked to Florida Bay and the Gulf of Mexico, is generally deemed marginal for reef accretion. Incursion onto the reef tract of waters that contain seasonally inconsistent temperature, salinity, turbidity, and nutrient content impedes coral growth. Fluctuating sea level and consequent settings controlled deposition. The primary dynamic was position of eustatic zeniths relative to regional topographic elevations. Sea level during the past 150 ka reached a maximum of ???10.6 m higher than at present ???125 ka, which gave rise to an inland coral reef (Key Largo Limestone) and ooid complex (Miami Limestone) during isotope substage 5e. These formations now form the Florida Keys and a bedrock ridge beneath The Quicksands (Gulf of Mexico). High-precision radiometric ages and depths of dated corals indicate subsequent apices remained ???15 to 9 m, respectively, below present sea level. Those peaks provided accommodation space sufficient for vertical reef growth yet exposed a broad landmass landward of the reefs for >100 ka. With time, space, lack of bay waters, and protection from the Gulf of Mexico, corals thrived in clear oceanic waters of the Gulf Stream, the only waters to reach them.

Journal of Coastal Research↗

USGS2016

Prediction of pesticide toxicity in Midwest streams

The occurrence of pesticide mixtures is common in stream waters of the United States, and the impact of multiple compounds on aquatic organisms is not well understood. Watershed Regressions for Pesticides (WARP) models were developed to predict Pesticide Toxicity Index (PTI) values in unmonitored streams in the Midwest and are referred to as WARP-PTI models. The PTI is a tool for assessing the relative toxicity of pesticide mixtures to fish, benthic invertebrates, and cladocera in stream water. One hundred stream sites in the Midwest were sampled weekly in May through August 2013, and the highest calculated PTI for each site was used as the WARP-PTI model response variable. Watershed characteristics that represent pesticide sources and transport were used as the WARP-PTI model explanatory variables. Three WARP-PTI models—fish, benthic invertebrates, and cladocera—were developed that include watershed characteristics describing toxicity-weighted agricultural use intensity, land use, agricultural management practices, soil properties, precipitation, and hydrologic properties. The models explained between 41 and 48% of the variability in the measured PTI values. WARP-PTI model evaluation with independent data showed reasonable performance with no clear bias. The models were applied to streams in the Midwest to demonstrate extrapolation for a regional assessment to indicate vulnerable streams and to guide more intensive monitoring.

Midwest↗

USGS2017

Nitrate reduction mechanisms and rates in an unconfined eogenetic karst aquifer in two sites with different redox potential

This study integrates push-pull tracer tests (PPTT) with microbial characterization of extracted water via quantitative polymerase chain reaction (qPCR) and reverse transcriptase qPCR (RT-qPCR) of selected functional N transformation genes to quantify nitrate reduction mechanisms and rates in sites with different redox potential in a karst aquifer. PPTT treatments with nitrate (AN) and nitrate-fumarate (ANC) were executed in two wells representing anoxic and oxic geochemical end-members. Oxic aquifer zero-order nitrate loss rates (mmol L −1 h −1 ) were similar for AN and ANC treatment, ranging from 0.03 ± 0.01 to 0.05 ± 0.01. Anoxic aquifer zero-order nitrate loss rates ranged from 0.03 ± 0.02 (AN) to 0.13 ± 0.02 (ANC). Microbial characterization indicates mechanisms influencing these rates were dissimilatory nitrate reduction to ammonium (DNRA) at the anoxic site with AN treatment, assimilatory reduction of nitrate to ammonium (ANRA) with ANC treatment in the water column at both sites, and additional documented nitrate reduction that occurred in unsampled biofilms. With carbon treatment, total numbers of microbes (16S rRNA genes) significantly increased (fourteenfold to thirtyfold), supporting stimulated growth with resulting ANRA. Decreased DNRA gene concentrations ( nrfA DNA) and increased DNRA activity ratio (nrfA-cDNA/DNA) supported the assertion that DNRA occurred in the anoxic zone with AN and ANC treatment. Furthermore, decreased DNRA gene copy numbers at the anoxic site with ANC treatment suggests that DNRA microbes in the anoxic site are chemolithoautotrophic. Increased RT-qPCR denitrification gene expression ( nirK and nirS ) was not observed in water samples, supporting that any observed NO 3 -N loss due to denitrification may be occurring in unsampled microbial biofilms.

Florida↗

USGS2009

Sources and distribution of organic compounds using passive samplers in Lake Mead National Recreation Area, Nevada and Arizona, and their implications for potential effects on aquatic biota.

Th e delineation of lateral and vertical gradients of organic contaminants in lakes is hampered by low concentrations and nondetection of many organic compounds in water. Passive samplers (semipermeable membrane devices [SPMDs] and polar organic chemical integrative samplers [POCIS]) are well suited for assessing gradients because they can detect synthetic organic compounds (SOCs) at pg L-1 concentrations. Semi-permeable membrane devices and POCIS were deployed in Lake Mead, at two sites in Las Vegas Wash, at four sites across Lake Mead, and in the Colorado River downstream from Hoover Dam. Concentrations of hydrophobic SOCs were highest in Las Vegas Wash downstream from waste water and urban inputs and at 8 m depth in Las Vegas Bay (LVB) where Las Vegas Wash enters Lake Mead. Th e distribution of hydrophobic SOCs showed a lateral distribution across 10 km of Lake Mead from LVB to Boulder Basin. To assess possible vertical gradients of SOCs, SPMDs were deployed at 4-m intervals in 18 m of water in LVB. Fragrances and legacy SOCs were found at the greatest concentrations at the deepest depth. Th e vertical gradient of SOCs indicated that contaminants were generally confi ned to within 6 m of the lake bottom during the deployment interval. The high SOC concentrations, warmer water temperatures, and higher total dissolved solids concentrations at depth are indicative of a plume of Las Vegas Wash water moving along the lake bottom. Th e lateral and vertical distribution of SOCs is discussed in the context of other studies that have shown impaired health of fish exposed to SOCs.

Journal of Environmental Quality↗

USGS2015

Temperature profile around a basaltic sill intruded into wet sediments

The transfer of heat into wet sediments from magmatic intrusions or lava flows is not well constrained from field data. Such field constraints on numerical models of heat transfer could significantly improve our understanding of water–lava interactions. We use experimentally calibrated pollen darkening to measure the temperature profile around a basaltic sill emplaced into wet lakebed sediments. It is well known that, upon heating, initially transparent palynomorphs darken progressively through golden, brown, and black shades before being destroyed; however, this approach to measuring temperature has not been applied to volcanological questions. We collected sediment samples from established Miocene fossil localities at Clarkia, Idaho. Fossils in the sediments include pollen from numerous tree and shrub species. We experimentally calibrated changes in the color of Clarkia sediment pollen and used this calibration to determine sediment temperatures around a Miocene basaltic sill emplaced in the sediments. Results indicated a flat temperature profile above and below the sill, with T > 325 °C within 1 cm of the basalt-sediment contact, near 300 °C at 1–2 cm from the contact, and ~ 250 °C at 1 m from the sill contact. This profile suggests that heat transport in the sediments was hydrothermally rather than conductively controlled. This information will be used to test numerical models of heat transfer in wet sediments on Earth and Mars.

Journal of Volcanology and Geothermal Research↗

USGS2018

Enhancement of a parsimonious water balance model to simulate surface hydrology in a glacierized watershed

The U.S. Geological Survey monthly water balance model (MWBM) was enhanced with the capability to simulate glaciers in order to make it more suitable for simulating cold region hydrology. The new model, MWBMglacier, is demonstrated in the heavily glacierized and ecologically important Copper River watershed in Southcentral Alaska. Simulated water budget components compared well to satellite‐based observations and ground measurements of streamflow, evapotranspiration, snow extent, and total water storage, with differences ranging from 0.2% to 7% of the precipitation flux. Nash Sutcliffe efficiency for simulated and observed streamflow was greater than 0.8 for six of eight stream gages. Snow extent matched satellite‐based observations with Nash Sutcliffe efficiency values of greater than 0.89 in the four Copper River ecoregions represented. During the simulation period 1949 to 2009, glacier ice melt contributed 25% of total runoff, ranging from 12% to 45% in different tributaries, and glacierized area was reduced by 6%. Statistically significant ( p < 0.05) decreasing and increasing trends in annual glacier mass balance occurred during the multidecade cool and warm phases of the Pacific Decadal Oscillation, respectively, reinforcing the link between climate perturbations and glacier mass balance change. The simulations of glaciers and total runoff for a large, remote region of Alaska provide useful data to evaluate hydrologic, cryospheric, ecologic, and climatic trends. MWBM glacier is a valuable tool to understand when, and to what extent, streamflow may increase or decrease as glaciers respond to a changing climate.

Journal of Geophysical Research F: Earth Surface↗