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Biomonitoring our streams

Testing for chemical pollution in our nation's streams has traditionally meant using analytical chemistry. In recent years, environmental agencies have endorsed biological monitoring to enhance or replace chemical monitoring. The theory behind biological monitoring (biomonitoring) is to use the organisms living in the aquatic system as a measure of water quality. This concept was applied to air quality and used by miners who took canaries into deep mines with them. If the canary died, the miners knew the air was bad, and they had to leave the mine. Biomonitoring an aquatic system uses the same theoretical approach . Aquatic organisms are subject to pollutants in the stream as it flows by, day or night. Consequently, the health of the organisms reflects the quality of the water they live in. If the pollution levels reach a critical concentration, certain organisms will die, migrate away, or fail to reproduce, eventually leading to the disappearance of those species at the polluted site. Normally, these organisms will return if conditions improve in the system. The three general components of an aquatic ecosystem that influence the biological community are: water chemistry, geomorphology, and hydrology. Each component influences the health of the biological community individually and together . Toxic chemicals are only a single factor within the water-chemistry component. The relation of these three components to each other can be shown on a triangle (figure 1). The relative importance of one component may change with time and location . At certain times of the year or in different geographical settings, a single factor may exert primary control on the well-being of the biological community. For example, straightening a stream and removing all woody debris drastically alters a stream's geomorphology. This results in loss of natural habitat and shelter for certain organisms. The organisms that require this shelter will disappear from the modified system. Separating the influence of one component from the others is difficult. Consideration of all three components and their interactions is critical when interpreting biomonitormg data.

Open-File Report↗

Potential effects of organic carbon production on ecosystems and drinking water quality

Restoration of tidal wetlands in the Sacramento-San Joaquin Delta (Delta) is an important component of the Ecosystem Restoration Program of the CALFED Bay-Delta Program (CALFED). CALFED is a collaborative effort among state and federal agencies to restore the ecological health and improve water management of the Delta and San Francisco Bay (Bay). Tidal wetland restoration is intended to provide valuable habitat for organisms and to improve ecosystem productivity through export of various forms of organic carbon, including both algae and plant detritus. However, the Delta also provides all or part of the drinking water for over 22 million Californians. In this context, increasing sources of organic carbon may be a problem because of the potential increase in the production of trihalomethanes and other disinfection by-products created during the process of water disinfection. This paper reviews the existing information about the roles of organic carbon in ecosystem function and drinking water quality in the Bay-Delta system, evaluates the potential for interaction, and considers major uncertainties and potential actions to reduce uncertainty. In the last 10 years, substantial progress has been made on the role of various forms of organic carbon in both ecosystem function and drinking water quality; however, interactions between the two have not been directly addressed. Several ongoing studies are beginning to address these interactions, and the results from these studies should reduce uncertainty and provide focus for further research.

California↗

The use of quantitative models in sea otter conservation

Sea otters are good indicators of ocean health. In addition, they are a keystone species, offering a stabilizing effect on ecosystem, controlling sea urchin populations that would otherwise inflict damage to kelp forest ecosystems. The kelp forest ecosystem is crucial for marine organisms and contains coastal erosion. With the concerns about the imperiled status of sea otter populations in California, Aleutian Archipelago and coastal areas of Russia and Japan, the last several years have shown growth of interest culturally and politically in the status and preservation of sea otter populations. Sea Otter Conservation brings together the vast knowledge of well-respected leaders in the field, offering insight into the more than 100 years of conservation and research that have resulted in recovery from near extinction. This publication assesses the issues influencing prospects for continued conservation and recovery of the sea otter populations and provides insight into how to handle future global changes.

Book chapter↗

Shifting currents: Progress, setbacks, and shifts in policy and practice

The Wisconsin Academy’s initial Waters of Wisconsin project (WOW I) facilitated a statewide conversation between 2000 and 2003 around one main question: How can we ensure healthy aquatic ecosystems and clean, abundant water supplies for tomorrow’s Wisconsin? Robust participation in this conversation underscored the important role citizens have in the stewardship of our waters, and we found enthusiastic support for farsighted policies—based on sound science—to manage our water legacy. Overall, we found that Wisconsinites cherish water and see our waters as essential to our way of life in Wisconsin. Nationally, our state ranks 25th in land area but has the fourth-highest area covered by water. Wisconsin is 20th in population but is second only to Florida in the number of fishing licenses sold each year. Clean water supports billions of dollars’ worth of economic activity through tourism, agriculture, and industry. From the Northwoods cabin to the Port of Milwaukee to the Wisconsin Dells, water shapes our state’s identity. Our tradition of safeguarding Wisconsin’s waters is grounded in values such as responsibility to family and future generations, respect for land and wildlife, protecting public health and safety, and caring for water as a common good, as articulated in the state’s Public Trust Doctrine (see page 9). These deeply held values have also shaped a conservation ethic, and its legacy has served many generations who depend upon and enjoy the waters of the state. Through WOW I, we identified the need to overcome the institutional and disciplinary separation of science, policy, and management protocols through a more integrated approach to water management. WOW also affirmed that the Wisconsin Department of Natural Resources (DNR) and other public agencies play a critical role in sound scientific application, citizen participation, and the practical implementation of policy while balancing public and private interests toward the goal of a clean water future. More than a decade has passed since our first statewide WOW conversation and the report that captured recommendations from its participants: Waters of Wisconsin: The Future of Our Aquatic Ecosystems and Resources. Drawing from a diverse and growing set of stakeholders from across the state, the Wisconsin Academy initiated a new conversation in 2012 (known as WOW II) to assess progress in regard to our 2003 recommendations. We also sought to review the status of waters in Wisconsin today. The result of this renewed conversation is Shifting Currents: Progress, Setbacks, and Shifts in Policy and Practice. The new report assesses progress in brief, and explores in greater depth the continuing and emerging challenges to water quality, supply, and aquatic ecosystems in Wisconsin. In this report, we first review the context and frameworks for public decision-making about water and then examine some of the root causes—or “drivers”—and ecological stressors that underlie many of the symptoms we see in the form of pollution or ecosystem degradation in Wisconsin. This is followed by a summary of current water issues, many of which had been identified in the 2003 report and remain relevant today. We examine progress since 2003 but also setbacks, and discuss issues that we are likely to continue to face in the coming decades, including controlling agricultural runoff, mitigating climate change and grappling with its effects on the state’s waters, protecting groundwater from bacterial contamination and other pollutants, and preventing groundwater depletion. We also attempt to anticipate issues on the horizon. We offer a deeper look at some particular challenges, such as phosphorus pollution and groundwater contamination. We then consider the current decision-making framework and how it is shaping our capacity to respond to water challenges in Wisconsin. Finally, we offer recommendations and identify opportunities to safeguard Wisconsin’s waters in the decades ahead. From its inception, the Wisconsin Academy’s Waters of Wisconsin Initiative has brought together a diverse community of experts from across the state and from varied fields and areas of interest, to address challenges and seize opportunities related to our precious waters. We have done so as a matter of both principle and practical reality: the state of our waters reflects the ways we interact not only with them, but also with one another and our institutions. The WOW Initiative has aimed to provide guidance for Wisconsin citizens in sustaining the health of our aquatic ecosystems and the resilience of our water supplies over the long term.

Report↗

Insights from long-term ungrazed and grazed watersheds in a salt desert Colorado Plateau ecosystem

Dryland ecosystems cover over 41% of the earth’s land surface, and living within these important ecosystems are approximately 2 billion people, a large proportion of whom are subsistence agropastoralists. Improper grazing in drylands can negatively impact ecosystem productivity, soil conservation, hydrologic processes, downstream water quantity and quality, and ultimately human health and economic well-being. Concerns regarding the degraded state of western US rangelands in the 1950s resulted in an interagency committee to study the effects of land use on runoff and erosion processes. In 1953, a federal research group established four paired watersheds in western Colorado to study the interaction of grazing by domestic livestock, runoff, and sediment yield. Exclusion of livestock from half of the watersheds dramatically reduced runoff and sediment yield after the first 10 yr—primarily due to changes in ground cover but not vegetation. Here, we report results of repeated soils and vegetation assessments of the experimental watersheds after more than 50 yr of grazing exclusion. Results show that many of the differences in soil conditions between grazed and ungrazed watersheds observed in the 1950s and 1960s were still present in 2004, despite reduced numbers of livestock: few differences in vegetation cover but large differences in biological soil crusts, soil stability, soil compaction, and soil biogeochemistry. There were differences among soil types in response to grazing history, especially soil lichen cover and soil organic matter, nitrogen, and sodium. Comparisons of ground cover measured in 2004 with those measured in 1953, 1966, and 1972 suggest much of the differences between grazed and ungrazed watersheds likely were driven by high sheep numbers during droughts in the 1950s. Persistence of these differences, despite large reductions in stocking rates , suggest the combination of overgrazing and drought may have pushed these salt desert ecosystems into a persistent, degraded ecological state.

Salt Desert Colorado Plateau Ecosystem↗

Use of riparian spiders as sentinels of persistent and bioavailable chemical contaminants in aquatic ecosystems: A review

Aquatic ecosystems around the world are contaminated with a wide range of anthropogenic chemicals, including metals and organic pollutants, that originate from point and nonpoint sources. Many of these chemical contaminants have complex environmental cycles, are persistent and bioavailable, can be incorporated into aquatic food webs, and pose a threat to the health of wildlife and humans. Identifying appropriate sentinels that reflect bioavailability is critical to assessing and managing aquatic ecosystems impacted by contaminants. The objective of the present study is to review research on riparian spiders as sentinels of persistent and bioavailable chemical contaminants in aquatic ecosystems. Our review of the literature on riparian spiders as sentinels suggests that significant progress has been made during the last two decades of research. We identified 55 published studies conducted around the world in which riparian spiders (primarily of the families Tetragnathidae, Araneidae, Lycosidae, and Pisauridae) were used as sentinels of chemical contamination of lotic, lentic, and estuarine systems. For several contaminants, such as polychlorinated biphenyls (PCBs), Hg, and Se, it is now clear that riparian spiders are appropriate sentinels. However, many contaminants and factors that could impact chemical concentrations in riparian spiders have not been well characterized. Further study of riparian spiders and their potential role as sentinels is critical because it would allow for development of national-scale programs that utilize riparian spiders as sentinels to monitor chemical contaminants in aquatic ecosystems. A riparian spider sentinel program in the United States would be complementary to existing national sentinel programs, including those for fish and immature dragonflies.

Environmental Toxicology and Chemistry↗

Employing an ecosystem services framework to deliver decision ready science

Public land managers have limited information to allow for the integration and balancing of multiple objectives in land management decisions including the social (cultural and health), economic (monetary and nonmonetary), and environmental aspects. In this article, we document an approach to consider the many facets of decision making by incorporating them into a decision context using an ecosystem services framework. This analysis is based on a multi-partner project led by the US Geological Survey and the US Fish and Wildlife Service to provide land management decision support for the Great Dismal Swamp National Wildlife Refuge. It is an integrated ecologic-economic analysis of baseline (current) and potential future quantities, qualities, and values of selected ecosystem services from the Refuge. Alternative management scenarios are modeled to consider the impact of specific management actions or natural disturbances on priority ecosystem services. We examine the benefits and challenges of using this framework. Key lessons learned from this effort include the mismatch in timing between physical and social science; the challenge of integrating methods from multiple disciplines; the importance of frequent communication to overcome siloed research; and the utility of an integrating framework for ecosystem services and supporting tools such as the dynamic ecosystem model.

Advances in Ecological Research↗

Mobile Bay

Mobile Bay is the largest bay found in Alabama’s coastal area (Handley et al., 2007). It was named an Estuary of National Significance in 1995 under the U.S. Environmental Protection Agency’s (EPA) National Estuary Program (NEP), and its Comprehensive Conservation Management Plan was completed in 2002. Mobile Bay is 1,070 km 2 (413 miles 2 ) in area and 51 km (32 miles) long, making it the sixth largest estuary in the continental United States (Mobile Bay NEP, 2008). Its ecosystem provides habitat for more than 300 species of birds, 310 species of fish, 68 species of reptiles, 57 species of mammals, 40 species of amphibians, and 15 species of shrimp (Mobile Bay NEP, 1997). Mobile Bay lies between the Mississippi and Atlantic Flyways (Mobile Bay NEP, 2003). Commercial and residential development and industrial use is heavy in the Mobile Bay area. Although local growth and industrial markets support the Mobile Bay area economy, the resulting environmental damage to the very ecosystem upon which they depend remains a threat to the environment, economy, and population. The Mobile Bay ecosystem boasts high biological diversity and productivity and supports many freshwater and saltwater species of recreational and commercial importance. The great diversity of Mobile Bay reflects the diversity of Alabama, which is home to the largest number of different plant and animal species of all states east of the Mississippi River (Stein, 2002), and is bolstered by the unique climate and geographic conditions surrounding the bay. Freshwater inflow from the Mobile-Tensaw River Delta, ranging from 60,000 to 3,700,000 gallons per second (Wallace, 1996), mixes with saltwater from the Gulf of Mexico, which enters Mobile Bay via wind and tides (Burgan and Engle, 2006). Because of the unique conditions surrounding Mobile Bay, including shallow waters, a dynamic climate, and artificial hydrologic modifications—such as the construction of the Mobile Bay Causeway in the 1920s, which serves as an unintentional barrier between Delta waters north of the Causeway and saline waters south of the Causeway, the salinity of Mobile Bay is highly variable. Mobile Bay receives an average of 165 cm (65 inches) of rain per year from tropical storms, summer thunderstorms, and winter cold fronts (Stout et al., 1998). The climate and geography that have made Mobile Bay so rich in resources have also contributed to the threats surrounding its ecosystem. The extensive amount of rain in Mobile Bay creates large amounts of runoff, polluting the waters with fertilizers, chemicals, sediment, oil, trash, and sewage (Mobile Bay NEP, 1997). Tourism, ecotourism, recreational and commercial fishing, recreational boating, shipping, and chemical, pulp, and paper production are significant industries in Mobile Bay and the surrounding areas. Despite the approximate \$3 billion and 55,000 jobs these industries bring into the community (Alabama Tourism Department, 2010), the growth, development, and environmental stress they create are major threats to the Mobile Bay ecosystem. Among the nation’s states, Alabama ranks fifth in number of different species (144 endemic species), second in number of extinctions that have already occurred (90 extinct species) and fourth in number of species at risk for extinction (14.8% at risk out of 4,533 total species; Stein, 2002). Twenty-one of these threatened and endangered species are found in Mobile Bay, whose brackish waters provide a nursery area for many species of vertebrates and invertebrates. Some of these species include the Alabama sturgeon, Gulf sturgeon, heavy pigtoe mussel, inflated heel-splitter mussel, West Indian manatee, Alabama beach mouse, Perdido beach mouse, Alabama red-bellied turtle, gopher tortoise, Kemp’s ridley sea turtle, green sea turtle, loggerhead sea turtle, eastern indigo snake, flatwoods salamander, piping plover, red-cockaded woodpecker, and wood stork. Habitat loss underlies the decline of some bird species in Mobile Bay, and large mammals such as the red wolf, Florida panther, and Florida black bear are no longer found in the area. However, some rare species, such as the swallow-tailed kite, sandhill crane, and gopher tortoise can still be found (Duke and Kruczynski, 1992). The value of wetlands in Mobile Bay and the rest of the Gulf of Mexico is still being investigated. Although various monetary valuations of wetlands exist, critics remark that undervaluation of wetlands is inevitable (Mobile Bay NEP, 2008) and that estimates often do not place appropriate value on ecological services (Mitsch and Gosselink, 2000). Additionally, many estimates account only for anthropogenic values. One estimate concludes that one acre of wetlands performs \$3,000 worth of water purification each year (Mobile Bay NEP, 1997). With more than 76,890 hectares (190,000 acres) of wetlands in the Mobile Bay area, that equates to a value exceeding one-half billion dollars every year. Tourism, fishing, boating, production, and shipping are significant industries in the Mobile Bay area. More than 90% of fish landed in recreational and commercial fishing in the bay depend on bay habitat, including wetlands, for life requirements (Mobile Bay NEP, 1997). The Port of Mobile is Alabama’s only ocean-ship port (Mobile Bay NEP, 2008). Baldwin County, on the eastern side of the bay, experienced a population increase of 75% from 1990 to 2007, with an 89% increase in housing units (Mobile Bay NEP, 2008). Development and industry support the Mobile Bay economy, but they depend on the continued health, sustainability, and production of the water and living resources of the Mobile Bay ecosystem. Wetland loss, along with other forms of environmental degradation, remains a threat to the Mobile Bay ecosystem and Mobile Bay’s socioeconomic foundation.

Alabama↗

The social, economic, and environmental importance of inland fish and fisheries

Though reported capture fisheries are dominated by marine production, inland fish and fisheries make substantial contributions to meeting the challenges faced by individuals, society, and the environment in a changing global landscape. Inland capture fisheries and aquaculture contribute over 40% to the world’s reported finfish production from less than 0.01% of the total volume of water on earth. These fisheries provide food for billions and livelihoods for millions of people worldwide. Herein, using supporting evidence from the literature, we review 10 reasons why inland fish and fisheries are important to the individual (food security, economic security, empowerment), to society (cultural services, recreational services, human health and well-being, knowledge transfer and capacity building), and to the environment (ecosystem function and biodiversity, as aquatic “canaries”, the “green food” movement). However, the current limitations to valuing the services provided by inland fish and fisheries make comparison with other water resource users extremely difficult. This list can serve to demonstrate the importance of inland fish and fisheries, a necessary first step to better incorporating them into agriculture, land-use, and water resource planning, where they are currently often underappreciated or ignored.

Environmental Reviews↗

Science from genes to landscapes

Wherever flowering plants flourish, pollinating bees, birds, butterflies, bats, and other animals are at work, providing vital and often unnoticed services. Many of these species are in serious decline, a situation if unabated, threatens agricultural production, maintenance of natural plant communities, and other important services. Responding to this urgent challenge, the U.S. Geological Survey (USGS) is part of efforts to provide scientific information to support pollinator conservation, including the implementation of a national pollinator health strategy ( http://www.usgs.gov/ecosystems/wildlife/pollinators/ .) This science is but one example of how the Ecosystems Science Mission Area of the USGS conducts science to support sound management and conservation of our Nation’s biological resources. It does this through research, technical assistance, and education conducted by Cooperative Research Units and Science Centers located in nearly every State. The quality of life and economic strength in America hinges on healthy ecosystems that support living things and natural processes. Ecosystem science better enables society to understand how and why ecosystems change, to predict and forecast future changes, and to guide actions that can prevent damage to, and restore and sustain ecosystems. It is through this knowledge that informed decisions are made about natural resources that can enhance our Nation's economic and environmental well-being.

Fact Sheet↗

USGS Science: Addressing Our Nation's Challenges

With 6.6 billion people already living on Earth, and that number increasing every day, human influence on our planet is ever more apparent. Changes to the natural world combined with increasing human demands threaten our health and safety, our national security, our economy, and our quality of life. As a planet and a Nation, we face unprecedented challenges: loss of critical and unique ecosystems, the effects of climate change, increasing demand for limited energy and mineral resources, increasing vulnerability to natural hazards, the effects of emerging diseases on wildlife and human health, and growing needs for clean water. The time to respond to these challenges is now, but policymakers and decisionmakers face difficult choices. With competing priorities to balance, and potentially serious - perhaps irreversible - consequences at stake, our leaders need reliable scientific information to guide their decisions. As the Nation's earth and natural science agency, the USGS monitors and conducts scientific research on natural hazards and resources and how these elements and human activities influence our environment. Because the challenges we face are complex, the science needed to better understand and deal with these challenges must reflect the complex interplay among natural and human systems. With world-class expertise in biology, geology, geography, hydrology, geospatial information, and remote sensing, the USGS is uniquely capable of conducting the comprehensive scientific research needed to better understand the interdependent interactions of Earth's systems. Every day, the USGS helps decisionmakers to minimize loss of life and property, manage our natural resources, and protect and enhance our quality of life. This brochure provides examples of the challenges we face and how USGS science helps decisionmakers to address these challenges.

General Information Product↗

Monitoring five-needle pine on Bureau of Land Management lands in Wyoming summary report for 2013, 2014, 2016, 2017

Whitebark pine (Pinus albicaulis) grows at high elevations and in subalpine communities in the Pacific Northwest and Northern Rocky Mountains. Limber pine (Pinus flexilis) occurs in western North America across a broad elevational gradient from the Canadian Rocky Mountains into parts of New Mexico and Arizona and from southern California eastward to the few, isolated populations existing on the western boundary of the Dakotas and Nebraska (Steele 1990, Schoettle and Rochelle 2000). Both of these five-needle pine species play a variety of ecological roles and are considered key components in the their environments. Currently, whitebark pine and limber pine are being impacted by multiple ecological disturbances. White pine blister rust, caused by the introduced fungus Cronartium ribicola, mountain pine beetle (Dendroctonus ponderosae), dwarf mistletoe (Arceuthobium spp.), wildfires, and drought all pose significant threats to the persistence of healthy five-needle populations. An effort was initiated in 2013 by the National Park Service and the Wyoming Bureau of Land Management (WYBLM) to evaluate and monitor the long-term health trajectory of five-needle pines on WYBLM lands within the Greater Yellowstone Ecosystem (GYE). With guidance from the Interagency Whitebark Pine Monitoring Program protocol, and employing a rapid assessment survey technique specifically designed for this endeavor, we monitored whitebark pine trees in 2013, 2014, 2016, 2017. We estimated the proportion of live, five-needle pine trees (>1.4 m tall) infected with white pine blister rust, documented blister rust infection severity by the occurrence and location of persisting and new infections, determined mortality of five-needle pine trees and described potential factors contributing to the death of trees, and assessed the multiple components of recruitment of understory five-needle pine into the reproductive population. White pine blister rust was widespread throughout WYBLM lands within the GYE. Using a combined ratio estimator we found that the proportion of live, >1.4 m tall five-needle pine trees infected with white pine blister rust was 0.156 (±0.054 SE; this estimate combines all surveyed trees). Bole cankers were 25% more prevalent than branch cankers in all five-needle pines observed. Mortality of surveyed trees on WYBLM lands was predominantly attributed to mountain pine beetle. For seedlings and saplings, a total of 4003 live, ≤1.4 m tall five-needle pines were documented. Cones or cone scars were recorded on 745 of the live trees. Of these reproducing trees, 44 were recorded with white pine blister rust infection. Long-term monitoring on five-needle pines on WYBLM lands will continue into the future.

Wyoming↗

The response of streams to changes in atmospheric deposition of sulfur and nitrogen in the Adirondack Mountains

Acidic deposition is the result of upwind sulfur (S) and nitrogen (N) emissions into the atmosphere from human activities. Environmental impacts from acidic deposition across forested landscapes include acidification of soil and drainage water, depletion of available soil nutrient bases, and impacts to and changes in forest and aquatic species composition and biodiversity. Acidic deposition can mobilize aluminum (Al) from soil-to-soil solution and subsequently to drainage water in forms that can be toxic to aquatic life. When exposed to decreasing levels of acidic deposition, which has been occurring in New York since the late 1970s, some soils and drainage waters have become gradually less acidic. Remaining questions relate to effects on stream resources, anticipated resource recovery under increasingly lower levels of deposition, and the levels of deposition (target loads, TLs) needed to reach a range of stream ecosystem recovery targets. Environmental scientists commonly estimate thresholds of air pollutant emissions and resulting atmospheric deposition at which adverse ecological effects are manifested. This analysis is often done using critical loads (CL) and/or TLs, using approaches that account for the spatial and temporal aspects of acidification and recovery. Exceedance represents the extent to which current levels of acidic deposition exceed the level expected to cause ecological harm. The research reported here is intended to help address S and N deposition TLs and ecosystem recovery of Adirondack streams, a resource that has been less thoroughly investigated than lakes. The overarching goal of this work is to highlight key considerations that will help inform decision-makers and ecosystem managers who are responsible for environmental policy in New York State and beyond. Salient aspects of stream TL modeling are discussed with an aim of informing not only scientists, but also policymakers, ecosystem managers, and nonscientists who are required to make decisions related to the effects of acidic deposition on natural ecosystems. Analyses reported herein quantify relations among chemical indicators and metrics of fish community health and biodiversity in streams of the Adirondack Park. This information is used to indicate levels of atmospheric deposition necessary to alleviate harmful effects on fish populations. Results of this investigation provide a framework that can be applied to better understand how modeled stream acid neutralizing capacity (ANC) values that are developed to support TL investigations can be adjusted to reflect high-flow ANC values that may be associated with toxic conditions. Since process models are often calibrated to a low-flow or average flow condition, the magnitude and spatial extent of TL exceedances increase substantially when episodic acidification is considered.

New York↗

National Aquatic Environmental DNA Strategy

Aquatic life is the engine of ecosystems and economies. In environments ranging from freshwater through marine, this biodiversity underpins the health, culture, opportunities, and economic wellbeing of the Nation -- from local communities to the entire country. The ability to evaluate the status, trends, and future projections of nature is key to maintaining national prosperity, and this requires timely and trusted information about the condition of aquatic biodiversity on a vast scale. With one of the largest Exclusive Economic Zones in the world and extensive estuaries, lakes, rivers and streams, it is a grand challenge for the United States to explore, monitor, and understand aquatic life.

Report↗

SemantEco: a semantically powered modular architecture for integrating distributed environmental and ecological data

We aim to inform the development of decision support tools for resource managers who need to examine large complex ecosystems and make recommendations in the face of many tradeoffs and conflicting drivers. We take a semantic technology approach, leveraging background ontologies and the growing body of linked open data. In previous work, we designed and implemented a semantically enabled environmental monitoring framework called SemantEco and used it to build a water quality portal named SemantAqua. Our previous system included foundational ontologies to support environmental regulation violations and relevant human health effects. In this work, we discuss SemantEco’s new architecture that supports modular extensions and makes it easier to support additional domains. Our enhanced framework includes foundational ontologies to support modeling of wildlife observation and wildlife health impacts, thereby enabling deeper and broader support for more holistically examining the effects of environmental pollution on ecosystems. We conclude with a discussion of how, through the application of semantic technologies, modular designs will make it easier for resource managers to bring in new sources of data to support more complex use cases.

Future Generation Computer Systems↗

Mercury studies in the Florida Everglades

Public concern for wildlife and human health problems due to mercury (Hg) toxicity has increased substantially since the mid-1980's. These concerns are manifested primarily by the issuance of fish consumption advisories in the majority of U.S. states, Canada, and several European countries because of high levels of mercury in game fish. Although the precise causes for this contamination problem are not completely understood, it appears that there are both source and ecosystem-specific factors that can result in elevated levels of mercury in game fish. Because mercury is known to adverse affect the human brain and nervous system, health concerns arise when elevated concentrations of mercury are detected in game fish from ecosystems where there is subsistence level consumption of fish. In extreme cases such as the Everglades, where mercury concentrations in fish consistently exceed the Florida advisory level of 1.5 parts per million, even occasional fish consumption is not recommended. For most aquatic ecosystems, atmospheric deposition is the primary source of mercury. although there are numerous instances of geologic and anthropogenic point-source contamination. There are many sources of mercury to the atmosphere, both natural and human related. Natural sources include outgassing from the oceans, volcanoes, and natural mercury deposits. Coal combustion, waste incineration, chloralkai production, and metal processing are the dominant human-related sources to the atmosphere. In ecosystems for which atmospheric deposition is the dominant source, resulting concentrations of total mercury in water are very low, generally less than 10 nanograms per liter (ng/L). The challenge to scientists is to explain the series of processes that lead to toxic or near-toxic levels of mercury in organisms near the top of the food chain (bioaccumulation), when aqueous concentrations and source-delivery rates are so low. To understand this phenomenon adequately, scientists must apply an interdisciplinary approach wherein various components of an ecosystem (atmosphere, biota, surface water, ground water, and sediments) are studied-contemporaneously. The purpose of this fact sheet is to describe the mercury contamination problem in south Florida, and the interdisciplinary project that was assembled under the auspices of the U.S. Geological Survey South Florida Ecosystem Program to investigate the underlying processes that cause mercury bioaccumulation.

Florida↗

Mangrove ecosystems: Importance, threats and opportunities for restoration

Mangroves are crucial for biodiversity conservation, coastal protection, and supporting local livelihoods. Mangroves may also protect coasts from storms and rising sea levels and can play a major role in climate mitigation. Threats to their health include activities such as infrastructural development, urban encroachment, aquaculture and crop farming, and oil and gas exploration. We review the threats and opportunities for the restoration of mangrove ecosystems on the coasts of Africa, which are highly impacted by oil spills. The most important challenge for mangrove restoration identified in this review is the restoration of appropriate hydrologic and salinity regimes prior to natural recruitment or the active planting of propagules.

Water↗

Integrated science for the study of microplastics in the environment—A strategic science vision for the U.S. Geological Survey

Executive Summary Evidence of the widespread occurrence of microplastics throughout our environment and exposure to humans and other organisms over the past decade has led to questions about the possibility of health hazards and mitigation of exposures. This document discusses nanoplastics as well as microplastics (referred to solely as microplastics); the microplastics have a range from 1 micrometer to 5 millimeters (1 μm–5 mm) in length, whereas the nanoplastics are less than 1 μm in length (sidebar ES1). A myriad of environmental exposure pathways with microplastics to humans and wildlife, including ingestion, inhalation, and bodily absorption, are likely to exist. A growing body of evidence has documented bioaccumulation of microplastics in tissues and organs of humans and wildlife, benthic community effects, and potential nutritional and reproductive effects in some wildlife species. Understanding if or when environmental exposures pose a health risk is complicated by the diversity of microplastic sizes, morphologies, polymer types, and chemicals added during manufacturing or sorbed from the environment; ongoing challenges in analytical methods used to detect, quantify, and characterize microplastics and associated chemicals in our ecosystems; and the fact that ecotoxicological studies regarding microplastics are still in their infancy. Therefore, the study of environmental exposures and potential related health hazards of microplastics to the public and wildlife is a One Health (sidebar ES2) research topic that necessitates integrated science approaches. A better understanding of the sources, pathways, fate, and biological effects of microplastics has become a priority of the Federal Government, State governments, Tribes, stakeholders, and the public. Examples of Federal and State microplasticfocused legislation and programs to prioritize microplastic research and reduction include the Federal Microbead-Free Waters Act of 2015, California Senate Bills 1422 and 1263 (2018), the U.S. Environmental Protection Agency (EPA) Trash Free Waters Program, the National Institute of Standards and Technology’s Microplastic and Nanoplastic Metrology project, and Minnesota’s microplastic project. With its unique expertise and capabilities, the U.S. Geological Survey (USGS) is well positioned to help fill some of the most important microplastic science gaps. This strategic science vision document for microplastics identifies current (2023) microplastic science gaps and prioritizes research relevant to the mission, expertise, and capabilities of the USGS. It is intended for USGS scientists and stakeholders to use as a starting point for planning, prioritizing, and designing collaborative environmental microplastic science. Many of the microplastic science gaps and priorities are scalable, from local to national, and thus, can be made commensurate with available funding and evolving analytical and field tools, laboratory capacity, and stakeholder needs. Current (2023) or future research by academia and other Federal or State agencies, and Tribes may be aimed at some of the same microplastic science gaps identified in this document. Therefore, this document can be used as an information resource to maximize strengths and capabilities and minimize redundancy in communication and collaboration.

Circular↗