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USGS2021

When a typical jumper skips: Itineraries and staging habitats used by Red Knots (Calidris canutus piersmai) migrating between northwest Australia and the New Siberian Islands

The ecological reasons for variation in avian migration, with some populations migrating across thousands of kilometres between breeding and non-breeding areas with one or few refuelling stops, in contrast to others that stop more often, remain to be pinned down. Red Knots Calidris canutus are a textbook example of a shorebird species that makes long migrations with only a few stops. Recognizing that such behaviours are not necessarily species-specific but determined by ecological context, we here provide a description of the migrations of a relatively recently described subspecies ( piersmai ). Based on data from tagging of Red Knots on the terminal non-breeding grounds in northwest Australia with 4.5- and 2.5-g solar-powered Platform Terminal Transmitters (PTTs) and 1.0-g geolocators, we obtained information on 19 route-records of 17 individuals, resulting in seven complete return migrations. We confirm published evidence that Red Knots of the piersmai subspecies migrate from NW Australia and breed on the New Siberian Islands in the Russian Arctic and that they stage along the coasts of southeastern Asia, especially in the northern Yellow Sea in China. Red Knots arrived on the tundra breeding grounds from 8 June onwards. Southward departures mainly occurred in the last week of July and the first week of August. We documented six non-stop flights of over c . 5000 km (with a maximum of 6500 km, lasting 6.6 days). Nevertheless, rather than staging at a single location for multiple weeks halfway during migration, piersmai -knots made several stops of up to a week. This was especially evident during northward migration, when birds often stopped along the way in southeast Asia and ‘hugged’ the coast of China, thus flying an additional 1000–1500 km compared with the shortest possible (great circle route) flights between NW Australia and the Yellow Sea. The birds staged longest in areas in northern China, along the shores of Bohai Bay and upper Liaodong Bay, where the bivalve Potamocorbula laevis , known as a particularly suitable food for Red Knots, was present. The use of multiple food-rich stopping sites during northward migration by piersmai is atypical among subspecies of Red Knots. Although piersmai apparently has the benefit of multiple suitable stopping areas along the flyway, it is a subspecies in decline and their mortality away from the NW Australian non-breeding grounds has been elevated.

New Siberian Islands↗

USGS1999

Of elephants and blind men: Deer management in the U.S. National Parks

Overabundant populations of white-tailed deer ( Odocoileus virginianus ) are becoming common in the eastern United States. Faced with burgeoning deer populations in eastern parks, the National Park Service (NPS) formulated policy based on its long experience with ungulate management in western parks. That the NPS failed to find a management solution acceptable to its many constituencies was inevitable. Like blind men touching different parts of an elephant and disagreeing about its form, those engaged in the debate about deer management in parks are viewing different parts of the ecological system. None has seen the entire system, and consequently, there is neither common agreement on the nature of the problem nor on the solutions. We explore the quandary of deer management in eastern parks by addressing three questions: (1) Can the National Park Service reconcile its management goals with those of its neighbors? (2) Can thresholds be identified for determining when to intervene in natural processes? (3) Is there a scientific foundation for proceeding with effective management of deer? We argue that reconciling the NPS management with that of state conservation agencies is not possible because management policy guides these agencies in opposite directions: the NPS is charged with limiting human impact on ecological processes, and state agencies are charged with exerting human control over population abundance. Questions about thresholds and a scientific basis for management arise from concern that irrupting deer populations are a manifestation of disrupted natural processes. Several population growth paradigms are at the heart of this ecological question. The science provides no consensus about which of these paradigms are appropriate to deer in eastern ecosystems. Thus, it is premature to expect science to identify if or when natural processes have been disrupted. While the NPS cannot effectively achieve its goals without better science, neither can it wait for science to fully understand the dynamics of plant–herbivore interactions. The best hope for resolving both the biological and political dilemmas surrounding deer management is through an adaptive management approach.

Ecological Applications↗

USGS2022

Mechanisms of forest resilience

Ecosystems are dynamic systems with complex responses to environmental variation. In response to pervasive stressors of changing climate and disturbance regimes, many ecosystems are realigning rapidly across spatial scales, in many cases moving outside of their observed historical range of variation into alternative ecological states. In some cases, these new states are transitory and represent successional stages that may ultimately revert to the pre-disturbance condition; in other cases, alternative states are persistent and potentially self-reinforcing, especially under conditions of altered climate, disturbance regimes, and influences of non-native species. These reorganized states may appear novel, but reorganization is a characteristic ecosystem response to environmental variation that has been expressed and documented throughout the paleoecological record. Resilience, the ability of an ecosystem to recover or adapt following disturbance, is an emergent property that results from the expression of multiple mechanisms operating across levels of organism, population, and community. We outline a unifying framework of ecological resilience based on ecological mechanisms that lead to outcomes of persistence, recovery, and reorganization. Persistence is the ability of individuals to tolerate exposure to environmental stress, disturbance, or competitive interactions. As a direct expression of life history evolution and adaptation to environmental variation and stress, persistence is manifested most directly in survivorship and continued growth and reproduction of established individuals. When persistence has been overcome (e.g., following mortality from stress, disturbance, or both), populations must recover by reproduction. Recovery requires the establishment of new individuals from seed or other propagules following dispersal from the parent plant. When recovery fails to re-establish the pre-disturbance community, the ecosystem will assemble into a new state. Reorganization occurs along a gradient of magnitude, from changes in the relative dominance of species present in a community, to individual species replacements within an essentially intact community, to complete species turnover and shift to dominance by plants of different functional types, e.g. transition from forest to shrub or grass dominance. When this latter outcome is persistent and involves reinforcing mechanisms, the resulting state represents a vegetation type conversion (VTC), which in this framework represents an end member of reorganization processes. We explore reorganization in greater detail as this phase is increasingly observed but the least understood of the resilience responses. This resilience framework provides a direct and actionable basis for ecosystem management in a rapidly changing world, by targeting specific components of ecological response and managing for sustainable change.

Forest Ecology and Management↗

USGS2013

Animal migration and risk of spread of viral infections

The potential contribution of migration towards the spread of disease is as varied as the ecology of the pathogens themselves and their host populations. This chapter outlines multiple examples of viral diseases in animal populations and their mechanisms of viral spread. Many species of insects, mammals, fish, and birds exhibit migratory behavior and have the potential to disperse diseases over long distances. The majority of studies available on viral zoonoses have focused on birds and bats, due to their highly migratory life histories. A number of studies have reported evidence of changes in the timing of animal migrations in response to climate change. The majority indicate an advancement of spring migration, with few or inconclusive results for fall migration. Predicting the combined effects of climate change on migratory patterns of host species and epidemiology of viral pathogens is complex and not fully realistic.

Book chapter↗

USGS2025

Sinoatrial contracaeciasis in Johnny Darters ( Etheostoma nigrum ) and Plains Topminnow ( Fundulus sciadicus ) from the South Platte drainage, Colorado

Intra-sinoatrial nematodes were incidentally recognized in wild-caught Colorado Johnny Darters ( Etheostoma nigrum , JD) in 2020–2021 and in Colorado Plains Topminnow ( Fundulus sciadicus , PTM) in 2023-2024. PTM and JD were evaluated histologically. Nematodes dissected from PTM were used for morphologic evaluation and molecular identification. The first and second internal transcribed spacers (ITS1 and ITS2) of ribosomal DNA were sequenced. Sinoatrial nematodes were found in two of 1232 JD (0.2%) and nine of 110 PTM (8.2%). Worms caused dilation or aneurysm of the sinus venosus. One JD had severe sinus venosus phlebitis. Morphologic, histologic and molecular features were diagnostic for Contracaecum spp. This is the first identification of larval Contracaecum in PTM, the first record of an intravascular nematode in this species, and the first documentation of vascular localization of Contracaecum larvae in JD. Vascular pathology could result in increased susceptibility to predation and favour the completion of the nematode life cycle. Parasites could become detrimental to population survival, especially those that are stressed by ecological and anthropogenic factors.

Colorado↗

USGS2016

Design for mosquito abundance, diversity, and phenology sampling within the National Ecological Observatory Network

The National Ecological Observatory Network (NEON) intends to monitor mosquito populations across its broad geographical range of sites because of their prevalence in food webs, sensitivity to abiotic factors and relevance for human health. We describe the design of mosquito population sampling in the context of NEON’s long term continental scale monitoring program, emphasizing the sampling design schedule, priorities and collection methods. Freely available NEON data and associated field and laboratory samples, will increase our understanding of how mosquito abundance, demography, diversity and phenology are responding to land use and climate change.

Ecosphere↗

USGS2021

Seasonal variation in resource selection by subadult golden eagles in the Great Basin Desert

Golden eagles Aquila chrysaetos are a long-lived and wide-ranging species believed to be stable or in slight decline across North America. Golden eagles have an extended subadult stage (4–5 years) that is critical to maintaining recruitment into the breeding population and population viability. Compared to adult golden eagles, the ecology of subadult golden eagles (hereafter, subadults) has received little attention. We investigated patterns of resource selection for subadults in the Great Basin Desert of the western United States during summer and winter, 2013–2019. We monitored 46 subadults with GPS transmitters and related locations (n = 99 037) with predictors hypothesized to influence seasonal patterns of space use with mixed-effects logistic regression. Subadults selected for ridges and upper slopes in summer and winter, but higher elevations in summer. Subadults showed weak selection for lower ridge density in summer, which was likely facilitated by selection for areas with greater thermal wind current potential. In contrast, subadults showed strong selection for higher ridge density in winter. Subadults selected areas further from roads in summer and closer to roads and electrical transmission lines in winter, which may be related to winter scavenging of road-killed ungulates. Resource selection functions suggested subadults selected for shrublands and woodlands in both seasons, but odds ratios revealed that during winter subadults avoided shrublands and increased selection of woodlands relative to summer. Subadults selected for areas with infrequent fires in both seasons; areas with frequent fires were avoided in summer but selected for in winter. Seasonal changes in resource selection suggested that subadults used woodlands more than expected, potentially reflecting spatial partitioning by subadults to lower-quality habitats to minimize competition with breeding adults during winter when energetic demands for thermoregulation were presumably higher and prey more limited.

Utah↗

USGS2021

Evaluating low flow patterns, drivers and trends in the Delaware River Basin

In the humid, temperate Delaware River Basin (DRB) where water availability is generally reliable, summer low flows can cause competition between various human and ecological water uses. As temperatures continue to rise, population increases and development expands, it is critical to understand historical low flow variability to anticipate and plan for future flows. Using a sample of 325 U.S. Geological Survey gages, we evaluated spatial patterns in several low flow metrics, the biophysical and climatic drivers of these metrics, and trends in low flows for two periods: 1950-2018 and 1980-2018. We calculated the annual 7-day low flow and date, low flow deficit as the departure below a long-term daily flow threshold and the number of discrete low flow periods below this threshold. We also aggregated several climate metrics to watershed scale and used existing watershed properties quantifying land cover, topography, soils, geology, and human activity. Random forest models were used to assess the hierarchy of variable importance in explaining mean-annual low flow variability for each low flow metric using all gages. We find muted regional patterns in mean-annual low flow and low flow variability, likely due to the myriad of anthropogenic, landscape, and flow modifications that obscure flow regimes from their natural characteristics. In contrast, individual years show markedly different spatial patterns in low flow magnitude and severity. Coincident with increases in precipitation, 7-day low flows have generally increased and low flow deficits decreased for both 1950-2018 and 1980-2018 periods. However, 7-day low flows have decreased in the Coastal Plain physiographic province where water use and impervious area have increased in recent decades, highlighting the effects of land and water management on low flows. With continued change expected in the DRB, additional research needs are highlighted to enable estimation of future low flows and to plan for periods of prolonged low flow.

Delaware, New Jersey, New York, Pennsylvania↗

USGS2020

A synthesis of the biology and ecology of sculpin species in the Laurentian Great Lakes and implications for the adaptive capacity of the benthic ecosystem

The Laurentian Great Lakes have experienced recent ecosystem changes that could lead to reductions in adaptive capacity and ultimately a loss of biodiversity and production throughout the food web. Observed changes in Great Lakes benthic communities include declines of native species and widespread success of invasive species like dreissenid mussels in all but Lake Superior. Understanding the ecology of native benthic deepwater preyfish and the reasons for their declines is important for predicting future losses in adaptive capacity and diversity, as well as managing the Great Lakes ecosystem to avoid such losses. Native sculpin species ( Cottus bairdii , C. cognatus , C. ricei , Myoxocephalus thompsonii ) historically were among the most abundant of the Great Lakes native deepwater benthic preyfish community and are an important link between offshore benthic and pelagic food webs. With one exception, these species have declined in abundance throughout the Great Lakes in recent years, but relatively little is known about their biology and ecology. This review synthesizes the available knowledge for the Great Lakes sculpin species and provides suggestions for future research efforts, which include understanding reproductive ecology and spawning behavior, connectivity and dispersal of populations, early life history, and influences of interactions with native and non-native species.

Great Lakes↗

USGS2025

Groundwater structures fish growth and production across a riverscape

Landscapes are composed of habitat patches and conditions that vary across space and time. While habitat variability and complexity can support important ecological processes and ecosystem services, the dynamic nature of habitats can also constrain organismal growth and production as optimal conditions are fleeting. In riverine ecosystems, groundwater discharge to streams stabilises water temperature and flow regimes, thus mediating how habitat complexity is expressed. Yet, how stable habitats structure growth and production within the broader landscape matrix is not well understood. In this study, we explored the effects of groundwater on spatiotemporal variation in growth and production for juvenile Yellowstone cutthroat trout ( Oncorhynchus virginalis bouvieri ) across the upper Snake River catchment, Wyoming, USA. We combined machine learning techniques and remotely sensed landscape data to estimate groundwater availability across the river network, which we linked to stream temperature regimes and conspecific density. We then used Bayesian hierarchical models to quantify the effects of temperature, density and groundwater on spatiotemporal variation in fish growth and production in 52 focal reaches. Finally, we predicted body size trajectories and trends in total production continuously over both space and time to understand the effect of groundwater at the riverscape scale. Groundwater discharged to streams where topography changes abruptly in valley-bottom areas underlain by coarse glacial deposits. Groundwater stabilised temperature regimes and was associated with high trout densities. Temperature and density, in turn, interacted to influence growth rates: growth increased strongly with temperature, but this effect was reduced when density was high. Accordingly, variation in groundwater availability among stream reaches diversified growth and production regimes. In reaches with low groundwater availability, growth and production declined over time from summer maxima. In contrast, in reaches with high groundwater availability, temporal trends in growth and production were hump-shaped—peaking in autumn—and mean production was greater. At the riverscape scale, temporal asynchrony in growth rates generated convergent spatial variation in growth capacity, but—when combined with density—led to the formation of distinct hotspots of production. Our results demonstrate how groundwater, an important driver of aquatic ecosystem heterogeneity, structures trout growth and production across space and time. Importantly, rare, but stable habitats may disproportionately affect ecological processes and serve as key sources of population diversity at larger spatial scales.

Wyoming↗

USGS2018

Moving in the Anthropocene: Global reductions in terrestrial mammalian movements

Animal movement is fundamental for ecosystem functioning and species survival, yet the effects of the anthropogenic footprint on animal movements have not been estimated across species. Using a unique GPS-tracking database of 803 individuals across 57 species, we found that movements of mammals in areas with a comparatively high human footprint were on average one-half to one-third the extent of their movements in areas with a low human footprint. We attribute this reduction to behavioral changes of individual animals and to the exclusion of species with long-range movements from areas with higher human impact. Global loss of vagility alters a key ecological trait of animals that affects not only population persistence but also ecosystem processes such as predator-prey interactions, nutrient cycling, and disease transmission.

Science↗

USGS2007

On the choice of statistical models for estimating occurrence and extinction from animal surveys

In surveys of natural animal populations the number of animals that are present and available to be detected at a sample location is often low, resulting in few or no detections. Low detection frequencies are especially common in surveys of imperiled species; however, the choice of sampling method and protocol also may influence the size of the population that is vulnerable to detection. In these circumstances, probabilities of animal occurrence and extinction will generally be estimated more accurately if the models used in data analysis account for differences in abundance among sample locations and for the dependence between site-specific abundance and detection. Simulation experiments are used to illustrate conditions wherein these types of models can be expected to outperform alternative estimators of population site occupancy and extinction. ?? 2007 by the Ecological Society of America.

Ecology↗

USGS2013

Seventy-five years of science—The U.S. Geological Survey’s Western Fisheries Research Center

As of January 2010, 75 years have elapsed since Dr. Frederic Fish initiated the pioneering research program that would evolve into today’s Western Fisheries Research Center (WFRC). Fish began his research working alone in the basement of the recently opened Fisheries Biological Laboratory on Lake Union in Seattle, Washington. WFRC’s research began under the aegis of the U.S. Fish and Wildlife Service and ends its first 75 years as part of the U.S. Geological Survey with a staff of more than 150 biologists and support personnel and a heritage of fundamental research that has made important contributions to our understanding of the biology and ecology of the economically important fish and fish populations of the Nation. Although the current staff may rarely stop to think about it, WFRC’s antecedents extend many years into the past and are intimately involved with the history of fisheries conservation in the Western United States. Thus, WFRC Director Lyman Thorsteinson asked me to write the story of this laboratory “while there are still a few of you around who were here for some of the earlier years” to document the rich history and culture of WFRC by recognizing its many famous scientists and their achievements. This historyalso would help document WFRC’s research ‘footprint’ in the Western United States and its strategic directions. Center Director Thorsteinson concluded that WFRC’s heritage told by an emeritus scientist also would add a texture of legitimacy based on personal knowledge that will all-to-soon be lost to the WFRC and to the USGS. The WFRC story is important for the future as well as for historical reasons. It describes how we got to the place we are today by documenting the origin, original mission, and our evolving role in response to the constantly changing technical information requirements of new environmental legislation and organizational decision-making. The WFRC research program owes its existence to the policy requirements of Federal conservation legislation originating with the construction of Grand Coulee Dam in 1933. The research program was shaped by laws enacted in subsequent years such as the Federal Water Pollution Control Act (1972), National Environmental Policy Act (1973), Endangered Species Act (1974), and Northwest Power Planning Act (1980), to name only a few. The WFRC has not been constrained by direct management or regulatory responsibility for a particular fishery (such as providing sustainable catch limits data to a resource management structure). Thus, WFRC has been able to concentrate on scientific pursuits and information needs required by contemporary environmental legislation. Over the years, we have pioneered in several important areas of fisheries research including the diagnoses and control of diseases in economically important fish, effects of environmental alterations on the physiological quality and survival of Pacific salmon released from federal mitigation hatcheries, applications in biotelemetry, and the bioenergetics of predator-prey interactions in the Columbia River. The WFRC of today is a widely distributed organization in the Western United States. Knowledge of the historical connections and accomplishments of our predecessors is important beyond the sense of pride and unity it instills in the WFRC family of today. For example, a discerning reader will note the evolution of WFRC’s research from a single disciplinary focus (early era—hatchery disease problems), to multiple disciplines (middle to late era—species, populations, habitats; threatened and endangered species), to the present era (multidisciplinary and with increasing process focus). For the benefit of the current WFRC staff, more emphasis has been placed on the early years rather than on the present day because people are quite naturally more familiar with the recent past than with the research done during the first decades of WFRC’s existence. By every rational measure, the WFRC has evolved into a fisheries research organization well positioned to provide the biological information needed to support the continued conservation and management of our Nation’s living aquatic natural resources. The high standard of excellence that connects WFRC’s past to our present research program provides a firm foundation on which to base the work yet to be done. In another 75 years, WFRC will undoubtedly be a very different place than it is today, but its evolution will be forever rooted in the story of the research and of the people related here. More about the diverse fisheries research projects WFRC scientists are conducting today is available at WFRC’s website: http://wfrc.usgs.gov/.

Washington↗

USGS2024

Identifying the forage base and critical forage taxa for Chesapeake waterbirds

To effectively maximize the conservation value of management plans intended to capture ecosystem-wide health, it is essential to obtain an understanding of emergent patterns in dietary dynamics spanning many species. Chesapeake Bay, USA, is a critical ecosystem used annually by a diverse assortment of waterbird species, including several of conservation concern. However, the ecosystem is threatened by many ecological pressures driven largely by the dense human population of the surrounding region. These issues necessitate proactive monitoring and management efforts to track the health of ecosystems like the Chesapeake Bay. Such monitoring efforts of population dynamics require adequate data on the connections between trophic levels to understand how changes to the forage base might influence higher trophic levels, such as these diverse avian predators. However, we have historically lacked standardized quantitative data drawing these connections at the community level, as well as the relative importance of these taxa in the diet of such predators. We collated existing quantitative data on avian dietary composition to construct a database on the diets of 58 waterbird species that make use of the Chesapeake Bay. From this database, we quantified the relative importance of forage taxa to the diet of each waterbird species. Such data can enable managers to develop a comprehensive suite of forage taxa indicators whose abundance and distributions can be monitored as a proxy for ecosystem health. It is our goal that this database be harnessed as a tool to enable conservation practitioners to prioritize indicator taxa for monitoring purposes, contributing towards conservation plans that best address the health of the ecosystem at large.

Delaware, Maryland, Virginia↗

USGS2019

Spatio-temporal population change of Arctic-breeding waterbirds on the Arctic Coastal Plain of Alaska

Rapid physical changes that are occurring in the Arctic are primary drivers of landscape change and thus may drive population dynamics of Arctic-breeding birds. Despite the importance of this region to breeding and molting waterbirds, lack of a comprehensive analysis of historic data has hindered quantifying avian population change. We estimated distribution, abundance, and spatially explicit population trend of 20 breeding waterbird species using 25 years (1992–2016) of aerial survey data collected on the Arctic Coastal Plain (ACP), Alaska. The ACP is an extensive wetland complex on Alaska’s North Slope that supports millions of breeding waterbirds and includes portions of the National Petroleum Reserve—Alaska and the Arctic National Wildlife Refuge. We summarized annual counts into approximately 6-km by 6-km grid cells and analyzed data with generalized linear mixed models that accounted for survey timing and spatio-temporal autocorrelation. Geese and swans were most abundant along the coast between Admiralty Bay and Prudhoe Bay. Sea ducks, generalist predators (i.e., jaeger, gulls, terns), and loons were most abundant between Utqiaġvik and Point Lay, Alaska. Important areas for most species included the coastal fringe near Teshekpuk Lake, the Colville River Delta, and Admiralty Bay. The National Petroleum Reserve—Alaska was an important area for all species examined. Conversely, density on the coastal plain of the Arctic National Wildlife Refuge was greater than average for 20% of species. Annual population growth rates over the 25-year survey period were variable: 13 increased (range: 1.4%–13.8%), one decreased (-3.4%), and six were stable. However, even species with no overall population trend had areas of changing population size, suggesting localized conditions affected waterbird distributions on the ACP. Our results can be used to better inform land use decisions, improve monitoring of waterbird populations, and increase understanding of avian response to ecological change in the Arctic.

Alaska↗

USGS2007

Design and implementation of estimation-based monitoring programs for flora and fauna: A case study on the Cherokee National Forest

Science-based monitoring of biological resources is important for a greater understanding of ecological systems and for assessment of the target population using theoretic-based management approaches. When selecting variables to monitor, managers first need to carefully consider their objectives, the geographic and temporal scale at which they will operate, and the effort needed to implement the program. Generally, monitoring can be divided into two categories: index and inferential. Although index monitoring is usually easier to implement, analysis of index data requires strong assumptions about consistency in detection rates over time and space, and parameters are often biasednot accounting for detectability and spatial variation. In most cases, individuals are not always available for detection during sampling periods, and the entire area of interest cannot be sampled. Conversely, inferential monitoring is more rigorous because it is based on nearly unbiased estimators of spatial distribution. Thus, we recommend that detectability and spatial variation be considered for all monitoring programs that intend to make inferences about the target population or the area of interest. Application of these techniques is especially important for the monitoring of Threatened and Endangered (T&E) species because it is critical to determine if population size is increasing or decreasing with some level of certainty. Use of estimation-based methods and probability sampling will reduce many of the biases inherently associated with index data and provide meaningful information with respect to changes that occur in target populations. We incorporated inferential monitoring into protocols for T&E species spanning a wide range of taxa on the Cherokee National Forest in the Southern Appalachian Mountains. We review the various approaches employed for different taxa and discuss design issues, sampling strategies, data analysis, and the details of estimating detectability using site occupancy. These techniques provide a science-based approach for monitoring and can be of value to all resource managers responsible for management of T&E species.

Proceedings of the Annual Conference of the Southe↗

USGS2016

Effects of Climate and land use on diversity, prevalence, and seasonal transmission of avian hematozoa in American Samoa

The indigenous forest birds of American Samoa are increasingly threatened by changing patterns of rainfall and temperature that are associated with climate change as well as environmental stressors associated with agricultural and urban development, invasive species, and new introductions of avian diseases and disease vectors. Long term changes in their distribution, diversity, and population sizes could have significant impacts on the ecological integrity of the islands because of their critical role as pollinators and seed dispersers. We documented diversity of vector borne parasites on Tutuila and Ta‘u Islands over a 10-year period to expand earlier observations of Plasmodium, Trypanosoma , and filarial parasites, to provide better parasite identifications, and to create a better baseline for detecting new parasite introductions. We also identified potential mosquito vectors of avian Plasmodium and Trypanosoma , determined whether land clearing and habitat alterations associated with subsistence farming within the National Park of American Samoa can influence parasite prevalence, and determined whether parasite prevalence is correlated with seasonal changes in rainfall, temperature and wind speed. Three taxonomically distinct lineages of Plasmodium were identified from mosquito vectors and forest birds based on partial sequence data from parasite mitochondrial genes. All three have been described from passerine and galliform birds in Australasia. Two lineages, SCEDEN01 and ORW1, had elongate gametocytes and large schizonts that were consistent with species of Plasmodium in the subgenus Giavannolaia, but were taxonomically distinct from known morphological species of Plasmodium based on a Bayesian phylogenetic analysis of a 478 bp region of the parasite cytochrome b gene. Both are candidates for description as new species. The third lineage (GALLUS02) was detected only in mosquito vectors on Tutuila and was similar in cytochrome b sequence to P. juxtanucleare , a pathogenic species of Plasmodium from chickens and other galliform birds from Australasia, Africa, and South America. Plasmodium relictum , the malarial parasite that has had such a devastating impact on Hawaiian forest birds, was not detected. We observed large, striated trypanosomes in avian hosts from both Tutuila and Ta‘u Islands that fell within the same taxonomic clade as T. corvi and T. culicavium based on 18S ribosomal DNA sequence. We also observed sheathed microfilariae with pointed tails that had some morphological similarities to microfilaria from species of Pelecitus, Struthiofilaria and Eulimdana , but identification will require recovery and examination of adult filarial worms from the connective tissue or body cavities of infected birds. We also observed one or more species of haemococcidians (Isospora, synonym = Atoxoplasma ) within circulating lymphocytes from multiple avian host species. Overall prevalence of Plasmodium was higher on Ta‘u (22%, 75/341) than Tutuila (9.2%, 27/294), with most infections occurring in Polynesian starlings, Samoan starlings, Wattled honeyeaters, and Cardinal honeyeaters. Prevalence was relatively constant from year to year and between seasons at individual study sites, but varied among study sites, with highest rates of infection in areas with agricultural activity at Faleasao (37.4%, 73/195, Ta‘u Island) and Amalau Valley (9.7%, 21/216, Tutuila Island). Prevalence in more remote areas of the National Park of American Samoa was lower, ranging from 1.4% (2/146) at Laufuti and Luatele on Ta‘u to 7.7% (6/78) at Olo Ridge on Tutuila. Similar trends were evident for infections with Trypanosoma and filarial worms. Overall prevalence was not influenced significantly by warmer, wet (summer) or cooler, dry (winter) season. We detected Plasmodium infections in Culex sitiens and C. quinquefasciatus through either salivary gland and midgut dissections or PCR amplification of parasite cytochrome b genes in pooled or individual samples of mosquitoes that were collected on Tutuila. Pooled or individual Aedes oceanicus, A. polynesiensis, A. tutuilae, A. upolensis, A. nocturnus, Aedes (Finlaya) (mixed pools of A. samoanus, A. oceanicus, A. tutuilae), Aedes (Stegomyia) (mixed pools of A. aegypti, A. upolensis, A. polynesiensis ), and C. annulirostris were negative for Plasmodium , but we detected infections with Trypanosoma through midgut and salivary gland dissections in a single C. sitiens from Amalau Valley, Tutuila and three A. oceanicus from Faleasao, Ta‘u. Two of the A. oceanicus from Faleasao amplified successfully with Trypanosoma primers, but sequences were distinctly different from those obtained from avian hosts. We found a strong association between land use and prevalence of mosquito-transmitted parasites on Ta‘u Island with odds of being infected more than 20 times greater in agricultural plots than more remote native forest. This relationship was evident on Tutuila Island but not statistically significant because of the close proximity of study sites and observed movement of birds between native forest and agricultural land. Our data support previous studies that have suggested that Plasmodium and other vector-borne parasites are part of the indigenous parasite fauna in American Samoa. Transmission dynamics appear to be affected by environmental changes associated with land use practices.

HI↗

USGS2024

An analytical approach for simulating effects of avalanches on mountain goat population dynamics: Implications for management and conservation

Mountain environments with snow avalanche hazard cover about 6% of Earth’s land area and occur on all continents. Whereas human risks associated with avalanche hazard have been widely studied, little is known about how avalanche activity affects population dynamics in mountain wildlife. Globally, 32 species of mountain ungulates across 70 countries occupy avalanche-prone terrain. Avalanches comprise the leading cause of mortality in coastal Alaskan mountain goats (mean = 36%, range = 23 - 65%, depending on area), and disproportionately remove prime-aged individuals from populations. The implications of such rates and patterns of mortality on population growth rate are likely to be significant given the species’ low reproductive productivity, but further clarity is needed. To fill this knowledge gap, we developed a sex- and age-specific population modeling approach that integrates both reproduction and mortality to simulate the effects of avalanche-caused mortality on population growth rate across a range of empirically-observed states of avalanche-caused mortality (minimum, mean, maximum). Simulations were conducted to illustrate model functionality, and also provide insight about potential avalanche impacts on population demographic processes. For example, when severe avalanche years occur populations can experience significant additive mortality and declines (up to 15%). Due to low reproductive rates and slow life-history strategy of the species, such impacts can lead to long demographic recovery times (up to 11 years). From a species conservation perspective, such impacts are striking, and highlight the utility of employing a quantitative modeling approach to predict possible effects of avalanches on mountain ungulate population dynamics and viability. Our work explicitly builds upon recent findings about the importance of avalanches on mountain-adapted animal populations, and associated implications for the cultural and ecological communities that depend on them.

Alaska↗