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At least 667 records · Page 37Linked to original sources
USGS2010

An introduction to the practical and ethical perspectives on the need to advance and standardize the intracoelomic surgical implantation of electronic tags in fish

The intracoelomic surgical implantation of electronic tags (including radio and acoustic telemetry transmitters, passive integrated transponders and archival biologgers) is frequently used for conducting studies on fish. Electronic tagging studies provide information on the spatial ecology, behavior and survival of fish in marine and freshwater systems. However, any surgical procedure, particularly one where a laparotomy is performed and the coelomic cavity is opened, has the potential to alter the survival, behavior or condition of the animal which can impair welfare and introduce bias. Given that management, regulatory and conservation decisions are based on the assumption that fish implanted with electronic tags have similar fates and behavior relative to untagged conspecifics, it is critical to ensure that best surgical practices are being used. Also, the current lack of standardized surgical procedures and reporting of specific methodological details precludes cross-study and cross-year analyses which would further progress the field of fisheries science. This compilation of papers seeks to identify the best practices for the entire intracoelomic tagging procedure including pre- and post-operative care, anesthesia, wound closure, and use of antibiotics. Although there is a particular focus on salmonid smolts given the large body of literature available on that group, other life-stages and species of fish are discussed where there is sufficient knowledge. Additional papers explore the role of the veterinarian in fish surgeries, the need for minimal standards in the training of fish surgeons, providing a call for more complete and transparent procedures, and identifying trends in procedures and research needs. Collectively, this body of knowledge should help to improve data quality (including comparability and repeatability), enhance management and conservation strategies, and maintain the welfare status of tagged fish.

Reviews in Fish Biology and Fisheries↗
USGS2006

Conceptual model for quantifying pre-smolt production from flow-dependent physical habitat and water temperature

A conceptual model has been developed to test river regulation concepts by linking physical habitat and water temperature with salmonid population and production in cold water streams. Work is in progress to examine numerous questions as part of flow evaluation and habitat restoration programmes in the Trinity River of California and elsewhere. For instance, how much change in pre-smolt chinook salmon ( Oncorhynchus tshawytscha ) production in the Trinity River would result from a different annual instream allocation (i.e. up or down from 271 × 10 6 m 3 released in the late 1980s) and how much change in pre-smolt production would result from a different release pattern (i.e. different from the 8.5 m 3 s −1 year-round release). The conceptual model is being used to: design, integrate and improve young-of-year population data collection efforts; test hypotheses that physical habitat significantly influences movement, growth and mortality of salmonid fishes; and analyse the relative severity of limiting factors during each life stage. The conceptual model, in conjunction with previously developed tools in the Instream Flow Incremental Methodology, should provide the means to more effectively manage a fishery resource below a regulated reservoir and to provide positive feedback to planning of annual reservoir operations.

Regulated Rivers: Research & Management↗
USGS2021

Identifying information gaps in predicting winter foraging habitat for juvenile Gulf Sturgeon

The Gulf Sturgeon Acipenser oxyrinchus desotoi is an anadromous species that inhabits Gulf of Mexico coastal waters from Louisiana to Florida and is listed as threatened under the U.S. Endangered Species Act. Seasonal cues (e.g., freshwater discharge) determine the timing of spawning and migration and may influence the availability of critical habitat during winter months in six estuaries. Large information gaps, especially related to critical estuarine habitat for juveniles, hinder recovery efforts to protect these habitats and assess risks from emerging threats. Using Apalachicola Bay, Florida, as a model system, we developed and analyzed a preliminary Bayesian network model so that we could identify knowledge gaps (i.e., where expert knowledge was lacking) and data gaps (i.e., where data were unavailable) that limit the ability to assess the quantity of critical estuarine habitat for juvenile Gulf Sturgeon. The model hypothesized habitat availability per winter month in estuarine habitat under alternative scenarios of river discharge and length of the winter foraging season. A search for geospatial data sets revealed that the largest gap involved salinity, temperature, and oxygen (i.e., water condition) monitoring data, with data available only for Apalachicola Bay. For the Apalachicola Bay model, data gaps prevented the development of 53% of water condition geospatial data sets and a sensitivity analysis showed that water condition data most limited the ability to predict habitat availability. Expert knowledge was low, and conditional certainty scores showed that the relationships with the lowest certainty were abiotic suitability and habitat availability. Reducing information gaps could aid the development of a model that is appropriate for informing management. Future efforts could prioritize the expansion of water monitoring within critical habitat estuaries and predicting abiotic suitability and habitat availability. Bayesian network models can easily incorporate prior and new information for complex systems. Thus, our model could be updated as future research and monitoring efforts close these information gaps.

Florida↗
USGS2022

Population reproductive structure of Rainbow Trout determined by histology and advancing methods to assign sex and assess spawning capability

Rainbow Trout Oncorhynchus mykiss have been intensively studied and gametogenesis has been described, but the use of reproductive indices in field studies has not been widely applied when assessing variability in growth or recruitment dynamics. We integrated descriptions for gametogenesis within the framework of standardized terminology for reproductive development in teleosts to develop sex-specific criteria for assignment of reproductive phases. We used these descriptions and histological analysis of gonad tissue collected from Rainbow Trout in the Colorado River downstream from Glen Canyon Dam to quantify season-, size-, and sex-specific variation in population reproductive structure. The accuracy of nonlethal methods (manual expression and ultrasonography) was evaluated for assigning sex by comparing estimates with those determined by histology. Rainbow Trout were sampled through an annual spawning cycle from October 2018 to April 2019. Spawning capable males were available across the entire period, with a higher proportion earlier in the season compared to later. Females were spawning capable in October, with a peak in February; by April, they were in the early developing phase, indicating that spawning had ended. Elevated levels of atresia (19% for fall spawners) and evidence for delayed maturation were identified, suggesting energetic limitations on the reproductive potential of the population. For both sexes, the probability of being spawning capable increased with fork length, with minimum sizes of ≥283 mm for females and ≥187 mm for males. Sex assignment using ultrasonography was more accurate (46%) than manual expression of gametes (9%), as only a small proportion of males and females expressed gametes. Probabilities of correct sex assignment using ultrasonography were strongly influenced by reproductive phase, with spawning capable fish (females: 100%; males: 77%) having significantly higher probabilities of correct sex assignment compared to immature fish. Furthermore, probabilities of correct sex assignment increased with fish size and were higher for females than for males. Results provide a framework for quantifying spawning capability and population reproductive structure in ongoing research to better understand the drivers of recruitment variability in aquatic ecosystems.

Arizona↗
USGS2013

Fish assemblages in borrow-pit lakes of the Lower Mississippi River

Borrow-pit lakes encompass about a third of the lentic water habitats (by area) in the active floodplain of the Lower Mississippi River, yet little is known about their fish assemblages. We investigated whether fish assemblages supported by borrow-pit lakes resembled those in oxbow lakes to help place the ecological relevance of borrow-pit lakes in context with that of natural floodplain lakes. In all, we collected 75 fish species, including 65 species in eight borrow-pit lakes, 52 species in four riverside oxbow lakes, and 44 species in eight landside oxbow lakes. Significant differences in several species richness metrics were evident between borrow-pit lakes and landside oxbow lakes but not between borrow-pit lakes and riverside oxbow lakes. All three lake types differed in fish assemblage composition. Borrow-pit lakes and riverside oxbow lakes tended to include a greater representation of fish species that require access to diverse environments, including lentic, lotic, and palustrine habitats; fish assemblages in landside oxbow lakes included a higher representation of lacustrine species. None of the fish species collected in borrow-pit lakes was federally listed as threatened or endangered, but several were listed as species of special concern by state governments in the region, suggesting that borrow-pit lakes provide habitat for sensitive riverine and wetland fish species. Differences in fish assemblages among borrow-pit lakes were linked to engineered morphologic features, suggesting that diversity in engineering can contribute to diversity in fish assemblages; however, more research is needed to match engineering designs with fish assemblage structures that best meet conservation needs.

Lower Mississippi River↗
USGS2015

Population characteristics of channel catfish near the northern edge of their distribution: implications for management

Channel catfish, Ictalurus punctatus (Rafinesque), populations in six lakes in northern Idaho, USA, were sampled to describe their population characteristics. During the summers of 2011 and 2012, 4864 channel catfish were sampled. Channel catfish populations had low to moderate catch rates, and length structure was dominated by fish <400 mm. Channel catfish were in good body condition. All populations were maintained by stocking age-1 or age-2 fish. Growth of fish reared in thermally enriched environments prior to stocking was fast compared to other North American channel catfish populations. After stocking, growth of channel catfish declined rapidly. Once stocked, cold water temperatures, prey resources and (or) genetic capabilities limited growth. Total annual mortality of age 2 and older channel catfish was generally <40%. Tag returns indicated that angler exploitation was low, varying from 0 to 43% among lakes. This research provides insight on factors regulating channel catfish population dynamics and highlights important considerations associated with their ecology and management.

Fisheries Management and Ecology↗
USGS2019

Estimating spatial–temporal differences in Chinook salmon outmigration survival with habitat- and predation-related covariates

Low survival rates of Chinook salmon ( Oncorhynchus tshawytscha ) smolts in California’s Central Valley have been attributed to multiple biological and physical factors, but it is not clear which factors have the largest impact. We used 5 years of acoustic telemetry data for 1709 late-fall Chinook salmon smolts to evaluate the effect of habitat- and predation-related covariates on outmigration survival through the Sacramento River. Using a Cormack–Jolly–Seber mark–recapture model, we estimated survival rates both as a function of covariates (covariate model) and as a function of river location and release year (spatial–temporal model). Our covariate model was overwhelmingly supported as the preferred model based on model selection criteria, suggesting the covariates adequately replicated spatial and temporal patterns in smolt survival. The covariates in the selected model included individual fish covariates, habitat-specific covariates, and temporally variable physical conditions. The most important covariate affecting salmon survival was flow. We describe the importance of these parameters in the context of juvenile salmon predation risk and suggest that additional research on predator distribution and density could improve model estimates.

California↗
USGS2010

A digital underwater video camera system for aquatic research in regulated rivers

We designed a digital underwater video camera system to monitor nesting centrarchid behavior in the Tallapoosa River, Alabama, 20 km below a peaking hydropower dam with a highly variable flow regime. Major components of the system included a digital video recorder, multiple underwater cameras, and specially fabricated substrate stakes. The innovative design of the substrate stakes allowed us to effectively observe nesting redbreast sunfish Lepomis auritus in a highly regulated river. Substrate stakes, which were constructed for the specific substratum complex (i.e., sand, gravel, and cobble) identified at our study site, were able to withstand a discharge level of approximately 300 m 3 /s and allowed us to simultaneously record 10 active nests before and during water releases from the dam. We believe our technique will be valuable for other researchers that work in regulated rivers to quantify behavior of aquatic fauna in response to a discharge disturbance.

Alabama↗
USGS2009

Influence of a weak field of pulsed DC electricity on the behavior and incidence of injury in adult Steelhead and Pacific Lamprey

Predation by pinnipeds, such as California sea lions Zalophus californianus, Pacific harbor seals Phoca vitulina, and Stellar sea lions Eumetopias jubatus on adult Pacific salmon Oncorhynchus spp in the lower Columbia River has become a serious concern for fishery managers trying to conserve and restore runs of threatened and endangered fish. As a result, Smith-Root, Incorporated (SRI; Vancouver, Washington), manufacturers of electrofishing and closely-related equipment, proposed a project to evaluate the potential of an electrical barrier to deter marine mammals and reduce the amount of predation on adult salmonids (SRI 2007). The objectives of their work were to develop, deploy, and evaluate a passive, integrated sonar and electric barrier that would selectively inhibit the upstream movements of marine mammals and reduce predation, but would not injure pinnipeds or impact anadromous fish migrations. However, before such a device could be deployed in the field, concerns by regional fishery managers about the potential effects of such a device on the migratory behavior of Pacific salmon, steelhead O. mykiss, Pacific lampreys Entoshpenus tridentata, and white sturgeon Acipenser transmontanus, needed to be addressed. In this report, we describe the results of laboratory research designed to evaluate the effects of prototype electric barriers on adult steelhead and Pacific lampreys.

Report↗
USGS2025

Food habits of Yellow Perch, Smallmouth Bass, and Northern Pikeminnow in Lake Cascade, Idaho

Objective Yellow Perch Perca flavescens was first encountered in Lake Cascade, Idaho, in 1957. Since its introduction, the abundance of Yellow Perch in Lake Cascade has been highly variable. Historically, declines in Yellow Perch abundance were attributed to predation by Northern Pikeminnow Ptychocheilus oregonensis . In the 1990s, Smallmouth Bass Micropterus dolomieu became established in Lake Cascade. Although Yellow Perch abundance has been high and currently supports a world-class fishery, the Idaho Department of Fish and Game has documented poor Yellow Perch recruitment in recent years, concerning regional managers. An investigation into the food habits of Yellow Perch, Smallmouth Bass, and Northern Pikeminnow was conducted to better understand the importance of juvenile Yellow Perch to predator diets. Methods In Lake Cascade, gill nets were deployed monthly from April 2022 to May 2023. Ageing structures and stomach contents were removed from Yellow Perch, Smallmouth Bass, and Northern Pikeminnow. Diet composition was quantified and then summarized by species, cohort, and season. Bioenergetics modeling, coupled with estimates of predator abundance, was used to evaluate overall consumption of Yellow Perch. Results In total, stomach contents were extracted from 1,099 Yellow Perch, 440 Smallmouth Bass, and 980 Northern Pikeminnow. Food habits varied by season and predator length, but Yellow Perch was a primary prey item of all study species. The energetic contribution of Yellow Perch to Yellow Perch varied from 10% to 80% across seasons. Smallmouth Bass consumed fewer Yellow Perch than either Yellow Perch or Northern Pikeminnow. The highest average per capita consumption of Yellow Perch (i.e., across seasons) was observed for 500–600-mm Northern Pikeminnow (five Yellow Perch/Northern Pikeminnow). Energetic contribution of Yellow Perch to Northern Pikeminnow diets was highest in spring 2023, yet Northern Pikeminnow consumed the highest average number of Yellow Perch in July. Bioenergetics modeling estimated that per-capita annual consumption of Yellow Perch was 6.0 kg for Yellow Perch, 3.4 kg for Smallmouth Bass, and 9.9 kg for Northern Pikeminnow. In total, estimated consumption of all study species was as high as 37% of the estimated total number age-0 Yellow Perch produced. Conclusions Yellow Perch was an important prey item for all three species, particularly Yellow Perch and Northern Pikeminnow. Results from this study provide important information on the predation of Yellow Perch in Lake Cascade. Further, this work will bolster a growing body of research on the food habits of and interactions between native and nonnative predators in western reservoir systems.

Idaho↗
USGS2022

Bayesian applications in environmental and ecological studies with R and Stan

Modern ecological and environmental sciences are dominated by observational data. As a result, traditional statistical training often leaves scientists ill-prepared for the data analysis tasks they encounter in their work. Bayesian methods provide a more robust and flexible tool for data analysis, as they enable information from different sources to be brought into the modelling process. Bayesian Applications in Evnironmental and Ecological Studies with R and Stan provides a Bayesian framework for model formulation, parameter estimation, and model evaluation in the context of analyzing environmental and ecological data. Features: An accessible overview of Bayesian methods in environmental and ecological studies Emphasizes the hypothetical deductive process, particularly model formulation Necessary background material on Bayesian inference and Monte Carlo simulation Detailed case studies, covering water quality monitoring and assessment, ecosystem response to urbanization, fisheries ecology, and more Advanced chapter on Bayesian applications, including Bayesian networks and a change point model Complete code for all examples, along with the data used in the book, are available via GitHub The book is primarily aimed at graduate students and researchers in the environmental and ecological sciences, as well as environmental management professionals. This is a group of people representing diverse subject matter fields, who could benefit from the potential power and flexibility of Bayesian methods.

Book↗
USGS2016

Behavior patterns and fates of adult steelhead, Chinook salmon, and coho salmon released into the upper Cowlitz River Basin, 2005–09 and 2012, Washington

A multiyear radiotelemetry evaluation was conducted to monitor adult steelhead ( Oncorhynchus mykiss ), Chinook salmon ( O. tshawytscha ), and coho salmon ( O. kisutch ) behavior and movement patterns in the upper Cowlitz River Basin. Volitional passage to this area was eliminated by dam construction in the mid-1960s, and a reintroduction program began in the mid-1990s. Fish are transported around the dams using a trap-and-haul program, and adult release sites are located in Lake Scanewa, the uppermost reservoir in the system, and in the Cowlitz and Cispus Rivers. Our goal was to estimate the proportion of tagged fish that fell back downstream of Cowlitz Falls Dam before the spawning period and to determine the proportion that were present in the Cowlitz and Cispus Rivers during the spawning period. Fallback is important because Cowlitz Falls Dam does not have upstream fish passage, so fish that pass the dam are unable to move back upstream and spawn. A total of 2,051 steelhead and salmon were tagged for the study, which was conducted during 2005–09 and 2012, and 173 (8.4 percent) of these regurgitated their transmitter prior to, or shortly after release. Once these fish were removed from the dataset, the final number of fish that was monitored totaled 1,878 fish, including 647 steelhead, 770 Chinook salmon, and 461 coho salmon. Hatchery-origin (HOR) and natural-origin (NOR) steelhead, Chinook salmon, and coho salmon behaved differently following release into Lake Scanewa. Detection records showed that the percentage of HOR fish that moved upstream and entered the Cowlitz River or Cispus River after release was relatively low (steelhead = 38 percent; Chinook salmon = 67 percent; coho salmon = 41 percent) compared to NOR fish (steelhead = 84 percent; Chinook salmon = 82 percent; coho salmon = 76 percent). The elapsed time from release to river entry was significantly lower for NOR fish than for HOR fish for all three species. Tagged fish entered the Cowlitz River in greater proportions than the Cispus River, regardless of origin. We found that 23–47 percent of the HOR fish entered the Cowlitz River and 12–38 percent entered the Cispus River. Similarly, 67–70 percent of the NOR fish entered the Cowlitz River and 38–66 percent entered the Cispus River. These behavioral differences translated into similar differences in fates during the spawning periods as higher percentages of tagged fish were assigned Cowlitz River fates than Cispus River fates. Fallback rates were affected by fish origin and release site. Overall, 12 percent of steelhead, 19 percent of Chinook salmon, and 8 percent of coho salmon fell back downstream of Cowlitz Falls Dam prior to spawning. Fallback rates were lower for fish that were released in the Cowlitz River or the Cispus River than for reservoir-released fish, but statistical comparisons were not robust because of small sample sizes at the river release sites. Fallback rates for fish released at the river release sites were 10 percent lower for steelhead, 4 percent lower for Chinook salmon, and 9 percent lower for coho salmon than for reservoir-released fish. However, fallback rates also were different between HOR and NOR fish. Fallback rates were significantly higher for HOR reservoir-released fish than for NOR reservoir-released fish. This study provided data that were insightful for understanding behavior and movement patterns in the upper Cowlitz River Basin and yielded estimates of fallback rates and fish fates that may be useful for fishery managers in the years to come. Studies from other systems have shown that factors such as prespawn mortality and fallback have resulted in substantial losses to spawning populations where trap-and-haul programs are being used as a restoration tool. Future research in the upper Cowlitz River Basin may use additional telemetry studies, genetic analyses, and spawning ground surveys to provide answers for new questions and to continue to monitor the progress of the reintroduction effort.

Washington↗
USGS2017

Comparing efficiency of American Fisheries Society standard snorkeling techniques to environmental DNA sampling techniques

Analysis of environmental DNA (eDNA) is an emerging technique used to detect aquatic species through water sampling and the extraction of biological material for amplification. Our study compared the efficacy of eDNA methodology to American Fisheries Society (AFS) standard snorkeling surveys with regard to detecting the presence of rare fish species. Knowing which method is more efficient at detecting target species will help managers to determine the best way to sample when both traditional sampling methods and eDNA sampling are available. Our study site included three Navajo Nation streams that contained Navajo Nation Genetic Subunit Bluehead Suckers Catostomus discobolus and Zuni Bluehead Suckers C. discobolus yarrowi . We first divided the entire wetted area of streams into consecutive 100-m reaches and then systematically selected 10 reaches/stream for snorkel and eDNA surveys. Surface water samples were taken in 10-m sections within each 100-m reach, while fish presence was noted via snorkeling in each 10-m section. Quantitative PCR was run on each individual water sample in quadruplicate to test for the presence or absence of the target species. With eDNA sampling techniques, we were able to positively detect both species in two out of the three streams. Snorkeling resulted in positive detection of both species in all three streams. In streams where the target species were detected with eDNA sampling, snorkeling detected fish at 11–29 sites/stream, whereas eDNA detected fish at 3–12 sites/stream. Our results suggest that AFS standard snorkeling is more effective than eDNA for detecting target fish species. To improve our eDNA procedures, the amount of water collected and tested should be increased. Additionally, filtering water on-site may improve eDNA techniques for detecting fish. Future research should focus on standardization of eDNA sampling to provide a widely operational sampling tool.

Arizona, New Mexico↗
USGS2026

Genetic bottleneck and panmixia following the collapse of a Great Lakes lake whitefish fishery

Lake whitefish Coregonus clupeaformis abundance has declined throughout most of the Laurentian Great Lakes in North America for two decades. Current management strategies in Lake Erie assume that there is a single stock of lake whitefish that spawns in the West Basin. There is documented lake whitefish spawning activity throughout the lake, leading to questions about locally adapted genetic stocks. Past research on lake whitefish genetic structure in Lake Erie has supported the single-stock hypothesis, but these studies used only neutral genetic markers or contained a limited number of samples that were collected during the spawning season when stocks would be spatially isolated. Using a GT-seq panel, we evaluate the genetic structure of lake whitefish collected from spawning shoals in the West, Central, and East basins of Lake Erie and compare these populations to lake whitefish from Lake Huron. We then investigate evidence of local adaptation and conduct demographic reconstruction using whole-genome sequencing. Our goals were to conclusively quantify intra-lake genetic structure in Lake Erie and determine whether spawning aggregations possess putatively adaptive variants that could be used for genetic stock identification at a sub-lake level. Our analysis supported the single-stock hypothesis in Lake Erie. However, Lake Erie stocks were distinct from neighboring Lake Huron. Whole-genome analysis did not identify any strong evidence of adaptive loci differentiating stocks. Inference of historic effective population size suggests that declines in lake whitefish populations may have caused a genetic bottleneck. Combined, these results indicate that lake whitefish in Lake Erie may have experienced an Allee Effect after population declines, resulting in a loss of population structure and genetic diversity as spawning shoals were recolonized from a common source.

Michigan, Ohio, Ontario↗
USGS2017

A suite of standard post-tagging evaluation metrics can help assess tag retention for field-based fish telemetry research

Telemetry can inform many scientific and research questions if a context exists for integrating individual studies into the larger body of literature. Creating cumulative distributions of post-tagging evaluation metrics would allow individual researchers to relate their telemetry data to other studies. Widespread reporting of standard metrics is a precursor to the calculation of benchmarks for these distributions (e.g., mean, SD, 95% CI). Here we illustrate five types of standard post-tagging evaluation metrics using acoustically tagged Blue Catfish ( Ictalurus furcatus ) released into a Kansas reservoir. These metrics included: (1) percent of tagged fish detected overall, (2) percent of tagged fish detected daily using abacus plot data, (3) average number of (and percent of available) receiver sites visited, (4) date of last movement between receiver sites (and percent of tagged fish moving during that time period), and (5) number (and percent) of fish that egressed through exit gates. These metrics were calculated for one to three time periods: early (<10 d), during (weekly), and at the end of the study (5 months). Over three-quarters of our tagged fish were detected early (85%) and at the end (85%) of the study. Using abacus plot data, all tagged fish (100%) were detected at least one day and 96% were detected for > 5 days early in the study. On average, tagged Blue Catfish visited 9 (50%) and 13 (72%) of 18 within-reservoir receivers early and at the end of the study, respectively. At the end of the study, 73% of all tagged fish were detected moving between receivers. Creating statistical benchmarks for individual metrics can provide useful reference points. In addition, combining multiple metrics can inform ecology and research design. Consequently, individual researchers and the field of telemetry research can benefit from widespread, detailed, and standard reporting of post-tagging detection metrics.

Reviews in Fish Biology and Fisheries↗
USGS2021

Reduced recruitment of Chinook salmon in a leveed bar-built estuary

Estuaries are commonly touted as nurseries for salmonids, providing numerous advantages for smolts prior to ocean entry. In bar-built estuaries, sandbars form at the mouth of rivers during periods of low stream flow, closing access to the ocean and preventing outmigration. We evaluated how summer residency in a leveed bar-built estuary affects the growth, survival, and recruitment of a Chinook salmon ( Oncorhynchus tshawytscha ) population. We performed a mark–recapture study on outmigrants to determine juvenile estuary abundance, growth, and survival. We used returning adult scales and otoliths to determine the relative proportion of summer estuary residents in spawning adults. Juveniles in the estuary grew less after mouth closure, and ultimately summer estuary residents had lower smolt-to-adult survival and contributed disproportionately less to the spawning population than juveniles that reared in the ocean their first summer. Mouth closure may lower food availability and deteriorate estuary conditions by reducing marine prey influx and estuary circulation. This research demonstrates the complexity of estuary dynamics and function as salmonid nurseries, particularly when considering the extensive modification of estuaries.

California↗
USGS2003

US Atlantic coast striped bass: Issues with a recovered population

Striped bass, Morone saxatilis (Walbaum), is an anadromous species naturally occurring along the US Atlantic coast, which historically supported valuable commercial and recreational fisheries. In response to a near order-of-magnitude decline in landings, the Atlantic States Marine Fisheries Commission enacted a management plan in 1981 protecting fish until they could spawn at least once. By 1989, recruitment increased in natal rivers and regulations were relaxed, permitting limited fisheries by 1990. By 1995, the stock was declared fully recovered. Since the recovery, concern has increased over the health of the stocks. In the 1990s, fish in poor physical condition with dermal lesions became common in Chesapeake Bay. Pathogens of most concern in cultures from fish include the genus Mycobacterium. Coincident with declines in fish health were changes in diets, declines of preferred prey, and reduced growth and condition. Theories were suggested linking declines in condition to reductions in forage base or pathogens. Diets have changed since the 1950s and while many Chesapeake fish are infected with mycobacteria, it is still not known how or if these factors are linked. The highest priorities for research were considered to be: linking numerous local and regional studies to provide a coast-wide perspective; continuation of investigations linking population health to the prey-base; determination of the cause-effect of mycobacteria infections; and formulation of management options.

Fisheries Management and Ecology↗
USGS2024

Genetic origins of a resurging lake whitefish, Coregonus clupeaformis, population in the Detroit River, Laurentian Great Lakes

The Detroit River connects Lake Huron and Lake Erie of the Laurentian Great Lakes. The river once supported a substantial lake whitefish ( Coregonus clupeaformis ) fishery until the early 1900s, when habitat loss, pollution, and overfishing contributed to the collapse of the fishery and loss of spawning populations in the river. In the early 1970s, efforts were initiated to improve water and habitat quality, and in December 2005 a spawning male lake whitefish and viable eggs were collected; the first documented evidence of spawning since 1916. Researchers have tracked the spawning magnitude of the lake whitefish population in the Detroit River since 2005 by assessing the number of eggs deposited on egg mats. Genetic analysis of larval fish hatched from eggs collected in the field between 2005 and 2018 was used to determine the relative contributions of Lake Erie and Lake Huron to the resurging population. Over 80% of the hatched larvae had parents originating from Lake Erie in all the years sampled. The estimated number of full-sibling families sampled at Belle Isle was the same in 2010 and 2014 and varied between 2009 and 2016 at Fighting Island. The estimated number of lake whitefish parents at Fighting Island decreased in the most recent collections possibly due to loss of habitat on spawning reefs due to sedimentation. Our results provide additional evidence that restored spawning habitat in the Detroit River is again being used by lake whitefish and continued reproduction at these sites may improve the Great Lakes portfolio of ecological and genetic diversity.

Detroit River↗