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Ecological risks of shale oil and gas development to wildlife, aquatic resources and their habitats

Technological advances in hydraulic fracturing and horizontal drilling have led to the exploration and exploitation of shale oil and gas both nationally and internationally. Extensive development of shale resources has occurred within the United States over the past decade, yet full build out is not expected to occur for years. Moreover, countries across the globe have large shale resources and are beginning to explore extraction of these resources. Extraction of shale resources is a multistep process that includes site identification, well pad and infrastructure development, well drilling, high-volume hydraulic fracturing and production; each with its own propensity to affect associated ecosystems. Some potential effects, for example from well pad, road and pipeline development, will likely be similar to other anthropogenic activities like conventional gas drilling, land clearing, exurban and agricultural development and surface mining (e.g., habitat fragmentation and sedimentation). Therefore, we can use the large body of literature available on the ecological effects of these activities to estimate potential effects from shale development on nearby ecosystems. However, other effects, such as accidental release of wastewaters, are novel to the shale gas extraction process making it harder to predict potential outcomes. Here, we review current knowledge of the effects of high-volume hydraulic fracturing coupled with horizontal drilling on terrestrial and aquatic ecosystems in the contiguous United States, an area that includes 20 shale plays many of which have experienced extensive development over the past decade. We conclude that species and habitats most at risk are ones where there is an extensive overlap between a species range or habitat type and one of the shale plays (leading to high vulnerability) coupled with intrinsic characteristics such as limited range, small population size, specialized habitat requirements, and high sensitivity to disturbance. Examples include core forest habitat and forest specialists, sagebrush habitat and specialists, vernal pond inhabitants and stream biota. We suggest five general areas of research and monitoring that could aid in development of effective guidelines and policies to minimize negative impacts and protect vulnerable species and ecosystems: (1) spatial analyses, (2) species-based modeling, (3) vulnerability assessments, (4) ecoregional assessments, and (5) threshold and toxicity evaluations.

Environmental Science & Technology↗

Managing birds and controlling aircraft in the Kennedy Airport-Jamaica Bay Wildlife Refuge complex: The need for hard data and soft opinions

During the 1980s, the exponential growth of laughing gull ( Larus atricilla ) colonies, from 15 to about 7600 nests in 1990, in the Jamaica Bay Wildlife Refuge and a correlated increase in the bird-strike rate at nearby John F. Kennedy International Airport (New York City) led to a controversy between wildlife and airport managers over the elimination of the colonies. In this paper, we review data to evaluate if: (1) the colonies have increased the level of risk to the flying public; (2) on-colony population control would reduce the presence of gulls, and subsequently bird strikes, at the airport; and (3) all on-airport management alternatives have been adequately implemented. Since 1979, most (2987, 87%) of the 3444 bird strikes (number of aircraft struck) were actually bird carcasses found near runways (cause of death unknown but assumed to be bird strikes by definition). Of the 457 pilot-reported strikes (mean = 23 ± 6 aircraft/yr, N = 20 years), 78 (17%) involved laughing gulls. Since a gull-shooting program was initiated on airport property in 1991, over 50,000 adult laughing gulls have been killed and the number of reported bird strikes involving laughing gulls has declined from 6.9 ± 2.9 (1983–1990) to 2.6 ± 1.3 (1991–1998) aircraft/yr; nongull reported bird strikes, however, have more than doubled (6.4 ± 2.6, 1983–1990; 14.9 ± 5.1, 1991–1998). We found no evidence to indicate that on-colony management would yield a reduction of bird strikes at Kennedy Airport. Dietary and mark–recapture studies suggest that 60%–90% of the laughing gulls collected on-airport were either failed breeders and/or nonbreeding birds. We argue that the Jamaica Bay laughing gull colonies, the only ones in New York State, should not be managed at least until all on-airport management alternatives have been properly implemented and demonstrated to be ineffective at reducing bird strikes, including habitat alterations and increasing the capability of the bird control unit to eliminate bird flocks on-airport using nonlethal bird dispersal techniques. Because the gull-shooting program may be resulting in a nonsustainable regional population of laughing gulls (>30% decline), we also recommend that attempts be made to initiate an experimental colony elsewhere on Long Island to determine if colony relocation is a feasible management option.

New York↗

Organic geochemistry applied to environmental assessments of Prince William Sound, Alaska, after the Exxon Valdez oil spill—a review

Organic geochemistry played a major role in the environmental assessments conducted following the Exxon Valdez oil spill, which occurred on March 24, 1989, and released about 258,000 bbls (41 million liters) of Alaska North Slope crude oil into Prince William Sound. Geochemical analyses of more than 15,000 sediment, tar, and biological samples and about 5000 water samples provide the largest database yet collected on oil-spill chemistry, and we review the results here. The marine environment of the Sound has a complex background of petrogenic, pyrogenic, and biogenic hydrocarbons from natural and anthropogenic sources. Geochemical evaluation of the fate and effects of the spilled oil required that this oil and its residues be distinguished from the background. A variety of molecular and isotopic techniques were employed to identify various hydrocarbon sources and to distinguish quantitatively among mixed sources in the samples. Although the specific criteria used to distinguish multiple sources in the region affected by the Exxon Valdez spill are not necessarily applicable to all spill situations, the principles that governed their selection are. Distributions of polycyclic aromatic hydrocarbons (PAH) and dibenzothiophenes distinguish Exxon Valdez oil and its weathered residues from background hydrocarbons in benthic sediments. Ratios of C 2 -dibenzothiophene C 2 -phenanthrene "> C 2 -dibenzothiopheneC 2 -phenanthrene and C 3 -dibenzothiophene C 3 -phenanthrene "> C 3 -dibenzothiopheneC 3 -phenanthrene were particularly useful. Carbon isotopes and terpane distributions distinguished Exxon Valdez residues found on shorelines from tars from other sources. Diesel and diesel soot were identified by the absence of alkylated chrysenes and a narrow distribution of n -alkanes, whereas pyrogenic products were distinguished by the dominance of 4- to 6-ring PAH over 2- to 3-ring PAH and by the dominance of non-alkylated over alkylated homologues of each PAH series. The presence of 18α(H)-oleanane in benthic sediments, coupled with its absence in Exxon Valdez oil and its residues, confirm another petrogenic source. Results of geochemical studies suggest that the petrogenic component in the background of benthic sediments is derived from oil seeps in the eastern Gulf of Alaska. In 1990 and 1991, Exxon Valdez residues, generally forming a small increment to the pre-spill background, were found to be only sporadically distributed in some shallow, near shore sediments adjacent to shorelines that had been heavily oiled in 1989. In 1994, occurrences of Exxon Valdez tars on shoreline surfaces were rare, although residues could be found buried in shoreline sediments at some isolated locations along the spill path where they were protected from wave action. Spilled oil residues collected 16 months after the spill were degraded, on average, by nearly 50%. Shoreline residues from sources other than the spill were also identified and are widespread throughout the Sound. These residues include (1) geochemically distinct tars and oils imported from California oil fields to Alaska for fuel and construction purposes prior to the discovery of the Cook Inlet and North Slope oil fields, (2) diesel and diesel soot, and (3) more highly refined products. Of the more than 2700 chemical analyses of biological samples of higher life forms (fish, birds, and mammals) about 150 (6%) indicate recognizable residues of Exxon Valdez oil, which were identified by their distribution of polycyclic aromatic hydrocarbons (PAH). Most of these samples (138) were collected in 1989 and most were associated with external surfaces or the gastrointestinal tract. Rarely do internal tissues or fluids contain recognizable fingerprints of spilled oil. This observation includes samples from marine mammals that were visibly oiled externally. Other hydrocarbon sources, including diesel and a non-petroleum artifact that occurs when concentrations of individual PAH are at or near their method detection limit, are also identified in biological samples.

Alaska↗

Legacy of the California Gold Rush: Environmental geochemistry of arsenic in the southern Mother Lode Gold District

Gold mining activity in the Sierra Nevada foothills, both recently and during the California Gold Rush, has exposed arsenic-rich pyritic rocks to weathering and erosion. This study describes arsenic concentration and speciation in three hydrogeologic settings in the southern Mother Lode Gold District: mineralized outcrops and mine waste rock (overburden); mill tailings submerged in a water reservoir; and lake waters in this monomictic reservoir and in a monomictic lake developing within a recent open-pit mine. These environments are characterized by distinct modes of rock-water interaction that influence the local transport and fate of arsenic. Arsenic in outcrops and waste rock occurs in arsenian pyrite containing an average of 2 wt% arsenic. Arsenic is concentrated up to 1300 ppm in fine-grained, friable, iron-rich weathering products of the arsenian pyrite (goethite, jarosite, copiapite), which develop as efflorescences and crusts on weathering outcrops. Arsenic is sorbed as a bidentate complex on goethite, and substitutes for sulfate in jarosite. Submerged mill tailings obtained by gravity core at Don Pedro Reservoir contain arsenic up to 300 ppm in coarse sand layers. Overlying surface muds have less arsenic in the solid fraction but higher concentrations in porewaters (up to 500 μg/L) than the sands. Fine quartz tailings also contain up to 3.5 ppm mercury related to the ore processing. The pH values in sediment porewaters range from 3.7 in buried gypsum-bearing sands and tailings to 7 in the overlying lake sediments. Reservoir waters immediately above the cores contain up to 3.5 μg/L arsenic; lake waters away from the submerged tailings typically contain less than 1 μg/L arsenic. Dewatering during excavation of the Harvard open-pit mine produced a hydrologic cone of depression that has been recovering toward the pre-mining groundwater configuration since mining ended in 1994. Aqueous arsenic concentrations in the 80 m deep pit lake are up to 1000 μg/L. Redistribution of the arsenic occurs during summer stratification, with highest concentrations at middle depths. The total mass of arsenic in the pit lake increases coinciding with early winter rains that erode, partially dissolve, and transport arsenic-bearing salts into the pit lake. Arsenic concentration, speciation, and distribution in the Sierra Nevada foothills depend on many factors, including the lithologic sources of arsenic, climatic influences on weathering of host minerals, and geochemical characteristics of waters with which source and secondary minerals react. Oxidation of arsenian pyrite to goethite, jarosite, and copiapite causes temporary attenuation of arsenic during summer, when these secondary minerals accumulate; subsequent rapid dissemination of arsenic into the aqueous environment is caused by annual winter storms. As the population of the Mother Lode area grows, it is increasingly important to consider these effects during planning and development of land and groundwater resources.

California↗

Holocene environmental and climatic change in the Northern Great Plains as recorded in the geochemistry of sediments in Pickerel Lake, South Dakota

The sediments in Pickerel Lake, northeastern South Dakota, provide a continuous record of climatic and environmental change for the last 12000 yr. Sediments deposited between 12 and 6 ka (radiocarbon) show extreme variations in composition, oxygen and carbon isotopic composition of bulk carbonate, carbon isotopic composition of organic matter, and magnetic susceptibility. These variations reflect changes in sources of moisture, regional vegetation types, precipitation-evaporation balance, ground- and surface-water influx, water residence time, erosion, lake productivity, water level, and water temperature. The total carbonate content of late Pleistocene sediments steadily increased from <20% at the base of the core to as much as 80% in sediments deposited between 11 and 9 ka. By about 8 ka, the total carbonate content of the sediments had declined to about 40% where it remained with little variation for the past 8 kyr, suggesting relatively stable conditions. There are marked increases in values of ??13C and ??18O in bulk carbonate, and ??13C of organic matter, in sediments deposited between 10 and 6 ka as evaporation increased, and the vegetation in the watershed changed from forest to prairie. This shift toward more 18O-enriched carbonate may also reflect a change in source or seasonality of precipitation. During this early Holocene interval the organic carbon (OC) content of the sediments remained relatively low (2-3%), but then increased rapidly to 4.5% between 7 and 6 ka, reflecting the rapid transition to a prairie lake. The OC content fluctuates slightly between 4 and 6% in sediments deposited over the past 6 kyr. Like OC and total carbonate, most variables measured show little variation in the 13 m of sediment deposited over the past 6 kyr, particularly when compared with early Holocene variations. Although the magnetic susceptibility of this upper 13 m of sediment is generally low (<10 SI units), the upper six meters of the section is marked by striking 1 m cycles (ca. 400-500 yr periodicity) in susceptibility. These cycles are interpreted as being due to variations in the influx of eolian detrital-clastic material. Century-scale cyclic variations in different proxy variables for aridity and eolian activity from sediments deposited over the past 2000 yr in other lakes in the northern Great Plains, as well as in sand dune activity, suggest that aridity cycles were the dominant feature of late Holocene climate of the northern Great Plains. (C) 2000 Elsevier Science Ltd and INQUA. All rights reserved.

Quaternary International↗

Potential effects of energy development on environmental resources of the Williston Basin in Montana, North Dakota, and South Dakota—Water resources

The Williston Basin has been a leading oil and gas producing area for more than 50 years. While oil production initially peaked within the Williston Basin in the mid-1980s, production rapidly increased in the mid-2000s, largely because of improved horizontal (directional) drilling and hydraulic fracturing methods. In 2012, energy development associated with the Bakken Formation was identified as a priority requiring collaboration toward improved timeliness of issuing permits for new wells combined with reasonable measures to maintain environmental quality. Shortly thereafter, the Bakken Federal Executive Group was created to address common challenges associated with energy development. The Bakken Federal Executive Group partner agencies identified a gap in current understanding of the cumulative environmental challenges attributed to energy development throughout the area, resulting in an effort to aggregate scientific data and identify additional research and information needs related to natural resources within areas of energy development in the Williston Basin. As part of this effort, water resources in the area (including groundwater; streams and rivers; and lakes, reservoirs, and wetlands) were characterized and described in terms of physical occurrence, flow characteristics, recharge, water quality, and water use. Similarly, waters produced during energy-development activities also were characterized even though these waters are not considered usable resources within the area. Groundwater resources were characterized by the major hydrogeologic units, or aquifers, identifying the units that supply most groundwater used for domestic, stock, agricultural, and industrial purposes. The groundwater characterization included other deeper hydrogeologic units in the Williston Basin that may be a useable source of water with treatment, have utility as a reservoir for reinjection of produced waters, or be a source of minerals and energy resources. A generalized groundwater budget and flow system identifying the sources of recharge (stream infiltration, precipitation, and movement [leakage] from other aquifers) and the general groundwater flow direction is included for each of the major hydrogeologic units. Rivers and streams within the Williston Basin with 10 or more years of continuous streamflow data were identified. For a subset of these sites, streamflow characteristics, including the monthly and annual mean flow, were generated to identify seasonal and interannual changes in streamflow and thus provide information on the drivers and reliability of streamflow at the seasonal or multiyear scale. Daily streamflow and annual extreme flows (peak and low flow) also were estimated for the subset of sites. The daily streamflow and annual extreme flow values provide information on short-term or extreme events that are relevant to infrastructure design and evaluating spills, leaks, or accidental discharges of water or petroleum products. Surface-water features (lakes, ponds, and wetlands) were classified using the Cowardin system and identified on the National Wetlands Inventory maps generated by the U.S. Fish and Wildlife Service. The spatial distribution of the surface-water features was analyzed by State, county, and specifically in comparison to the Prairie Pothole Region. The proximity of the surface-water features to energy development infrastructure (specifically oil or gas well pads) was evaluated. It was determined that, although oil or gas wells are often near a surface-water feature, most surface-water features do not have wells nearby, with the exception of wells in the Prairie Pothole Region. Water-quality data were aggregated from two data sources: (1) the Water-Quality Portal, sponsored by the U.S. Geological Survey (USGS), U.S. Environmental Protection Agency (EPA), and National Water Quality Monitoring Council; and (2) a data compilation completed as part of the USGS National Water-Quality Assessment project. The Water-Quality Portal integrates publicly available water-quality data from databases maintained by the USGS, EPA, and U.S. Department of Agriculture, including water-quality data from Tribal, State, and local databases. Water-quality data for 15 commonly measured water-quality constituents were aggregated for groundwater, rivers and streams, and lakes and reservoirs. For each aggregated dataset (groundwater, rivers and streams, and lakes and reservoirs), analyses of the water-quality data included summary statistics, maps of spatial distribution of constituent values, boxplots of constituent values by timeframe or hydrogeologic unit, spatial comparisons of site locations and constituent values to petroleum well density, and comparisons of the constituent values measured to EPA drinking-water standards/guidelines. Produced water includes all fluids brought to the surface along with the targeted hydrocarbons as part of the oil and gas exploration and extraction processes. These fluids may include formation water (waters that co-exist with rock/oil/gas), hydraulic fracturing fluids, and other combinations of water and chemicals used during oil and gas well drilling, development, treatments, recompletions, and workovers. Produced water datasets were aggregated from two sources: the USGS National Produced Waters Geochemical database (ver. 2.1) and a series of projects focused specifically on sampling produced water in the Williston Basin from 2010 to 2014. The National Produced Waters Geochemical database was useful for a general understanding of produced-water chemistry. Produced waters are characterized by extreme salinity and contain elevated concentrations of other constituents (including arsenic, barium, cadmium, lead, zinc, radium-226/radium-228, and ammonium) that could negatively affect water and aquatic resources if released. Produced waters also have a generally unique chemical (isotopic) signature that may be useful in tracking water from different geologic units; for example, the oxygen/deuterium and strontium ratio values measured in brine waters from the Bakken Formation are distinct from brines collected from other geologic units in the Williston Basin. Water-use information related to energy production in the area also was aggregated and summarized. The summary of water use is not limited to oil and gas production but includes water used to produce all types of energy resources in the Williston Basin, including coal/lignite, thermoelectric power, oil and gas, hydropower, biomass and biofuels, wind, geothermal, and solar. Each State has its own methods for regulating and reporting water usage within its jurisdiction. These methods can introduce problems when examining water use from sources, such as the Missouri River or Fox Hills aquifer, that are shared across political boundaries. Without the one-to-one match for usage types and amounts used from a water source, it is difficult to develop a comprehensive water budget for the water source being evaluated. A large amount of freshwater is required to prepare a well for oil and gas well production; in some cases, 3 to 7 million gallons of water are needed per well. The EPA estimates that hydraulic fracturing in the Williston Basin uses between 70 to 140 billion gallons per year. Water also is used for myriad other purposes related to ancillary oil and gas extraction. In addition to water used for immediate energy development, the expanded human workforce migrating into the area and other support staff who have moved into the area during the development also use water. Research and information needs were identified that could be relevant in the evaluation of the effects of energy development on water resources. Information needs related to the evaluation of groundwater resources include the following: improved potentiometric-surface maps for glacial units; availability of a uniform stream network digital geographic coverage that spans the international boundary with Canada; enhanced surface-water use information with regards to the gain and loss of streamflow to shallow groundwater, which would increase understanding groundwater and surface-water interactions; and expanded geophysical assessments. Gaps in the availability of streamflow data include the lack of information on ice-jam flooding despite potential for effects to infrastructure (pipelines, roads, and facilities) and an understanding of the cumulative effects of largely undocumented stock and diversion dams. Although this study resulted in the aggregation of a large quantity of water-quality data, the availability of consistently collected, systematically processed and reported data over large parts of the Williston Basin is sparse. Few samples have been analyzed for constituents that may indicate the effect of energy development on water resources. Constituents that could be considered include boron, chloride, bromide, iodine, fluoride, manganese, lithium, radium, strontium isotopes, volatile organic compounds, and isotopes of inorganic ions (such as hydrogen and carbon). Collaboration between Tribal, Federal, State, and local entities to identify a common study design, common monitoring constituents, and consistent sampling locations would generate datasets with broad utility and would likely result in overall cost savings for monitoring over time. Similarly, there is a need for standardized sample collection, processing, laboratory analytical methods, and the collection of ancillary data for produced waters sampling. Additional characterization of the range of chemical, microbial, and isotopic compositions and quantities of “end-member” produced waters, and the collection of time-series datasets to document the changes in produced waters during and after well development also were needs identified during this study. Water-use estimates would be improved through the implementation of comprehensive studies of water use from groundwater and surface-water sources using consistent methodologies across the Williston Basin. The submission of chemical and water data related to hydraulic fracturing collected by the oil and gas industry would add to the quantity of available data. Consistent implementation of regulations and monitoring controls across political boundaries (State, county, and international) would further improve the consistency of data available for the estimates of water use.

Montana, North Dakota, South Dakota↗

Stratigraphic and interregional changes in Pennsylvanian coal-swamp vegetation: Environmental inferences

Quantitative analysis of Pennsylvanian coal-swamp vegetation provides a means of inferring organization and structure of communities. Distribution of these communities further provides inferences about environmental factors, including paleoclimate. Our observations are based on in situ, structurally preserved peat deposits in coal-ball concretions from 32 coal seams in the eastern one-half of the United States and from several seams in western Europe and on spore assemblages from more than 150 seams. There were three times of particularly significant and nearly synchronous vegetational changes in the Midcontinent and Appalachian coal regions during the Pennsylvanian Period. Each was different in kind and magnitude. The first marked changes occurred during the early part of the Middle Pennsylvanian with the fluctuating decline in the high level of lycopod dominance. The abundance of cordaites increased. There was a rise in the occurrences of the lycopod herbs to form intercalated marshlands and an overall increase in floral diversity. Changes ensuing from this time also include shifts in dominant species of lycopod trees and a sustained rise in abundance and diversity of tree-fern spores. The next significant time of change was during the middle part of the Middle Pennsylvanian, representing both a culmination of earlier trends and expansions of cordaites in the Midcontinent where there was a maximum change in species without net loss of diversity. Tree ferns and medullosan pteridosperms attained subdominant levels of abundance and diverse lycopod species dominated except in the Atokan-Desmoinesian transition of the Midcontinent. The third and sharpest break occurred near the Middle—Late Pennsylvanian boundary when extinctionsof the dominant, coal-swamp lycopods allowed development of tree-fern dominance. The Late Pennsylvanian coal swamps apparently were colonized or recolonized mainly by species from outside coal swamps rather than by the survivor populations of the Middle Pennsylvanian swamps. Paralleling the changes in floras through the Pennsylvanian are changes in preservational aspects of the peat. These include a decline in shoot/root ratios from approximately 1 to < 1 during the first time of vegetational changes and a rise in this ratio during the second; there was a parallel rise and fall in fusain abundance and a rise in wood/periderm ratios. The stratigraphic distribution of identified coal resources in the United States is interpreted as largely dependent on net changes in relative wetness of Pennsylvanian coal swamps, a pattern of drying during the first period of vegetational change, followed by a concomitant increase in continuous wet climate with brackish influence in the Midcontinent during the second; this was followed by a time of extreme moisture stress bringing on the third, and most severe, vegetational change.

International Journal of Coal Geology↗

Evaluation of chronic effects of potassium chloride and nickel on survival, growth, and reproduction of a unionid mussel (Lampsilis siliquoidea)

The ASTM International standard test method for freshwater mussels (E2455‐13) recommends 4‐week toxicity testing with juveniles to evaluate chronic effects on survival and growth. However, concerns remain that the method may not adequately address the sensitivity of mussels to longer term exposures (>4 weeks), particularly in relation to potential reproductive impairments. No standard method directly evaluates toxicant effects on mussel reproduction. The objectives of the present study were to (1) evaluate toxicity endpoints related to reproduction in fatmucket ( Lampsilis siliquoidea ) using two common reference toxicants, potassium chloride (KCl) and nickel (Ni); (2) evaluate the survival and growth of juvenile fatmucket in standard 4‐week and longer term (12‐week) KCl and Ni tests following a method refined from the standard method; and (3) compare the sensitivity of the reproductive endpoints with the endpoints obtained from the juvenile mussel tests. Reproductive toxicity tests were conducted by first exposing female fatmucket brooding mature larvae (glochidia) to five test concentrations of KCl and Ni for 6 weeks. Subsamples of the glochidia were then removed from the adults to determine three reproductive endpoints: (1) the viability of brooded glochidia; (2) the viability of free glochidia in a 24‐h exposure to the same toxicant concentrations as their mother; and (3) the success of glochidia parasitism on host fish. Mean viability of brooded glochidia was significantly reduced in the high KCl concentration (26 mg K/L) relative to the control, with a 20% effect concentration (EC20) of 14 mg K/L, but there were no significant differences between the control and any Ni treatment (EC20 > 95 µg Ni/L). The EC20s for viability of free glochidia after the additional 24‐h exposure and parasitism success were similar to the EC20s of brooded glochidia. The EC20s based on the most sensitive biomass endpoint in the 4‐week juvenile tests were 15 mg K/L and 91 µg Ni/L, similar to or greater than the EC20s from the reproductive KCl and Ni tests, respectively. When exposure duration in the juvenile tests was extended from 4 to 12 weeks, the EC20s decreased by more than 50% in the KCl test but by only 8% in the Ni test. Overall, these results indicate that a standard 4‐week test with juvenile mussels can prove effective for estimating effects in chronic exposures with different life stages although a longer term 12‐week exposure with juvenile mussels may reveal higher sensitivity of mussels to some toxicants, such as KCl.

Environmental Toxicology and Chemistry↗

1993 Annual Report: San Francisco estuary regional monitoring program for trace substances

This first annual report of the San Francisco Estuary Regional Monitoring Program contains the results of monitoring measurements made in 1993. Measurements of conventional water quality parameters and trace contaminant concentrations were made at 16 stations throughout the Estuary three times during the year: the wet period (March), during declining Delta outflow (May), and during the dry period (September). Water toxicity tests were conducted at 8 of those stations. Measurements of sediment quality and contaminant concentrations were made at the same 16 stations during the wet and dry sampling periods. Sediment toxicity was measured at 8 of those stations. Transplanted, bagged bivalve bioaccumulation and condition was measured at 11 stations during the wet and dry sampling periods. Water Monitoring. Total or near-total (dissolved + particulate, see text) arsenic, cadmium, selenium, and dissolved (0.45 &micro;m filtered) arsenic, cadmium, copper, nickel, silver, and zinc in water were highest in the South Bay. In general, dissolved metals in water were usually lowest in the Central Bay due to ocean influences. Near-total nickel and total mercury in water were highest in the northern estuary (San Pablo and Suisun Bays). Dissolved chromium and lead were highest at the Sacramento and San Joaquin River confluence stations. Six of the ten dissolved trace metals were highest in March during high runoff. Dissolved and total arsenic, selenium, and near-total cadmium were highest in September. Concentrations of trace organic contaminants are reported for the March sampling period. Total PAHs and PCBs were highest in the South Bay, but PCBs were also high in the Napa River. Dissolved PAHs were highest in the Central Bay, and dissolved PCBs were highest in the Napa River. Total and dissolved pesticides were highest in the Sacramento River and in the Extreme South Bay. Concentrations of trace elements in water (except selenium) were usually closely related with other environmental parameters. Total or near-total metals concentrations in water were most often associated with the amount of particulate material (TSS) in the water. Dissolved concentrations were usually associated with salinity or dissolved organic carbon (DOC) content. Dissolved PAHs were well correlated with TSS, but dissolved and total trace organic contaminants were poorly correlated with other water parameters. Based on deviations from conservative mixing of fresh and salt water, three different patterns of possible sources of metals were identified in 1993. For dissolved chromium and lead, rivers and local runoff appeared to be important sources. For dissolved arsenic, cadmium, copper, and nickel year-round inputs from the South Bay appeared to be important sources. Dissolved mercury, selenium, and zinc were associated with local runoff in the South Bay during the wet period. Dissolved silver did not fit any of these patterns. Although most contaminant concentrations were below water quality objectives, several trace contaminants were above the objectives at some stations. Comparisons to water quality objectives are used as a guide for evaluation of contaminant concentrations, but there are some differences in the way the RMP data are measured and that prescribed for regulatory purposes (see text). Concentrations of 5 metals in water were above EPA or Regional Basin Plan water quality objectives at six stations (see Table 30). Most of these elevated levels occurred at the northern estuary stations. Total PCB concentrations were above EPA human health objectives at all RMP stations. The pesticides chlordane, dieldrin, and DDTs were above the EPA objectives at several RMP stations, particularly at the northern-most, and river confluence stations. Although some of the contaminant concentrations were above water quality objectives, water toxicity tests (96 hour algal growth and 48 hour bivalve larval development tests) did not indicate toxicity (sometimes inconclusive) associated with the water samples collected at any of the RMP stations in 1993. Exposure to Bay San Francisco Estuary Regional Monitoring Program Regional Monitoring Program 1993 Report ii water actually enhanced algal growth at most stations. In addition to the Estuary-wide sampling, the Sacramento and San Joaquin Rivers were sampled upstream from their confluence. Stations in each river were sampled six times over a 6 week period of high flows. In the Sacramento River, seven of the ten dissolved metals measured had concentrations lower than those measured at the river confluence stations. Some metals concentrations in the San Joaquin River were higher, and some were lower than concentrations from the river confluence station. Metals concentrations in the Sacramento River were poorly related to river flow because the station at Rio Vista is under considerable tidal influence. In the San Joaquin River, flows were inversely related to 7 of 10 total metals concentrations. Sediment Monitoring. Concentrations of silver, mercury, and lead in sediment were highest in the South Bay. However, concentrations of most trace metals in sediments were highest in the northern estuary at stations with the finest (silt, clay) sediments. The northern estuary stations with the coarsest (sand, shell) sediments generally had the lowest metals concentrations. There were differences in concentrations of cadmium, lead, and selenium in sediments between the sampling periods, but no consistent trend as to which sampling period had higher values. In September, PAHs and PCBs in sediments were highest in the Central Bay, but pesticides in sediments were highest in the northern estuary and Extreme South Bay. NOAA&rsquo;s Median Effects Ranges (ERM) for sediments were used as a guide for evaluation of sediment contaminant concentrations. Nickel was the only trace contaminant in sediment above the ERM guidelines, and it was high at all RMP stations. These high levels are probably due to natural, geologic sources. Although sediment contaminant concentrations were below ERMs, sediment toxicity tests (10 day amphipod mortality, and 48 hour bivalve larval development in elutriates) indicated toxicity at all stations tested. Sediment factors that could have caused the toxicity were not investigated. Bivalve Bioaccumulation. Mussels, oysters, and freshwater clams were transplanted to the RMP stations to evaluate bioaccumulation of trace substances. Trace metals were bioaccumulated at nearly all RMP stations. However, arsenic, lead, and mercury did not appear to bioaccumulate. There was generally more bioaccumulation during the dry season than during the wet season. In September, PAHs, PCBs, and pesticides accumulated in all samples. Bioaccumulation of PAHs and pesticides was generally highest at the river confluence stations, and the Napa River. PCBs accumulated most at Redwood Creek. There were substantial differences in the degree of bioaccumulation among the species. Oysters appeared to accumulate higher concentrations of trace metals than the other species, especially copper, which may be a natural phenomenon. There are no established tissue contaminant standards for trace metal and organic contaminants. Therefore, comparisons to Median International Standards (MIS) for human consumption, or U.S. Food and Drug Administration (USFDA) action levels for trace organics are used to evaluate the bioaccumulation results. Concentrations of selenium were higher than MIS guidelines at all stations during the wet season. Other trace metal concentrations were higher than MIS guidelines at various stations during one or the other sampling period. However, none of the bivalves contained concentrations above the USFDA or National Academy of Sciences (NAS) guidelines for trace organic contaminants. The transplanted bivalves survived well at all stations except in the Napa River where less than 35% survived during both sampling seasons. Measures of bivalve condition (dry weight, shell volume) indicated that bivalves deployed in the Central Bay grew significantly, but those at most other stations actually lost weight. Whether these differences were due to natural causes such as salinity or food supply, or to contamination, was not determined. Pilot Studies. Two pilot monitoring studies were conducted in 1993. A pilot study of Estuary hydrography and phytoplankton was conducted by scientists from the U.S. Summary Geological Survey in Menlo Park and U.C. Davis. Water column profiles at up to 37 stations were monitored along a transect of the Estuary run monthly between the South Bay and the Delta. The primary objective of this study was to define physical (salinity, temperature, suspended particulate matter, and light penetration), chemical (dissolved oxygen) and biological (chlorophyll a) characteristics of Estuary water that may influence other chemical and biological reactions. A second objective was to investigate planktonic indicators of ecosystem structure and function. The data collected in 1993 showed the extent and duration of the spring phytoplankton bloom in the South Bay, other localized blooms in the northern estuary, the stratification and mixing associated with the entrapment zone in the northern estuary, and mixing in the Estuary resulting from the high rainfall in 1993. Knowledge of the duration and extent of these natural features of the Estuary provide context for interpretation of the RMP contaminant data collected only 3 times per year. Another pilot study of suspended sediment transport processes was conducted by the USGS in Sacramento. This study used continuous recording sensors at Point San Pablo and the Bay Bridge to measure the amount of suspended sediment in the water at mid-depth and near the bottom, as well as tide height. The objectives of this study were to estimate which factors determine suspended solids concentrations in the Central Bay and to collect time series of suspended solids that are appropriate for continuous monitoring of suspended solids and for calibration and validation of numerical models. The investigators determined that spring tides accounted for most of the variation in suspended solids concentrations at the stations monitored, not runoff from the Sacramento or San Joaquin Rivers, or semidiurnal and diurnal tides. Comparisons were also made between measurements made by the continuous recordings and the RMP samples collected during the regular monitoring cruises. The different ways of measuring TSS were generally comparable, however only 3 measurements per year as made by the RMP could not provide the information of TSS variation actually occurring in the Estuary. This information is important because as shown by the RMP data, total contaminant concentrations in Estuary water is largely dependent on the TSS in the water. This implies that the RMP measurements alone cannot determine accurately the range of contaminant concentrations without better characterizing the dynamics of TSS. The RMP Pilot Studies are important to the developing RMP because they will help put RMP measurements into the perspective of Estuary processes and mechanisms at other time scales. The studies can relate those processes to the RMP measurements and will facilitate revision of sampling design and interpretation. Summaries of other monitoring activities pertinent to regional monitoring are also included in the Report: a description of the Regional Board&rsquo;s Bay Protection Studies, the Sacramento Coordinated Monitoring Program, and a wetlands monitoring plan are included.

California↗

Evaluation of the Bushy Park Reservoir three-dimensional hydrodynamic and water-quality model, South Carolina, 2012–15

The Bushy Park Reservoir is a relatively shallow impoundment in southeastern South Carolina. The reservoir, located under a semi-tropical climate, is the principal water supply for the city of Charleston, South Carolina, and the surrounding areas including the Bushy Park Industrial Complex. Although there was an adequate supply of freshwater in the reservoir in 2022, water-quality concerns are present over taste-and-odor and saltwater-intrusion issues. From 2013 to 2015, the U.S. Geological Survey (USGS), in cooperation with the Charleston Water System, engaged in a multi-year study of the hydrology and hydrodynamics of Bushy Park Reservoir to better understand factors affecting water-quality conditions in the reservoir. As part of this study, Charleston Water System worked with Tetra Tech, Inc., a consulting and engineering firm, to develop a Bushy Park Reservoir hydrodynamic and water-quality modeling framework, built upon earlier efforts by both Tetra Tech and the U.S. Army Corps of Engineers. At the completion of the new modeling framework, the USGS was requested to evaluate the calibrated hydrodynamic and water-quality model. The Bushy Park Reservoir Environmental Fluid Dynamics Code (EFDC) model was calibrated for the time period from January 1, 2012, to December 31, 2015. The general modeling approach for the newly revised modeling framework, as briefly detailed in this report, was developed with EFDC. The EFDC is a grid-based modeling package that can simulate three-dimensional flow, transport, and water quality in surface-water systems. This report evaluated the capacity of Tetra Tech’s Bushy Park EFDC model to simulate water discharge, water circulation, surface elevations, temperature, salinity, and other water-quality parameters. The USGS model review focused specifically on the following criteria: (1) determine if the model, with additional effort, could be developed into an adequate planning tool for Bushy Park Reservoir; (2) assess the capacity of the model to specifically address water-quality issues in the reservoir related to taste-and-odor and saltwater intrusions; and, (3) evaluate three preliminary water-management scenarios related to reduced water withdrawals in the reservoir and the effect on saltwater intrusion. Overall, the model was able to simulate discharge, flow velocity, and water-surface elevations with generally good agreement between the simulated and measured values. Specifically, the model was able to demonstrate good agreement for discharge at two USGS continuous discharge locations (USGS station 02172002; USGS station 02172040), with Wilmott index of agreements of 0.86 and 0.75, respectively. A total of seven USGS streamgages, located on the West Branch of the Cooper River, Durham Canal, and the Cooper River, were available for water-surface elevations, with index of agreements ranging from 0.74 to 0.99. However, model-simulated water-surface elevation ranges were appreciably high (compared to measured ranges) for two locations near Pinopolis Dam, farthest upstream on the West Branch of the Cooper River. This result may indicate that too much simulated tidal energy propagated through the model domain. For water temperature, 16 calibration stations were available for at least part of the 4-year simulation. The index of agreement range for temperature comparisons was from 0.95 to 1.00, indicating excellent agreement between the measured and simulated results. One of the primary future applications for the Bushy Park Reservoir EFDC model is to determine the extent of saltwater intrusions. A wide range in the salinity prediction quality was simulated with the model. The prediction quality ranged from an index of agreement of 0.15 at Cooper River approximately 2.75 miles southeast of the Tee, South Carolina, to 0.92 at West Branch Cooper River near Moncks Corner, South Carolina. Although the model did not accurately simulate some of the larger salinity deviations resulting during individual hydrologic events, the seasonal salinity trends were adequately simulated with the model during the study period (2012–15). Therefore, it may be difficult to simulate extreme hydrologic events, such as during large storms, where high salinity water is exchanged with Bushy Park Reservoir. There was agreement in model simulation with the measured data either on the quantitative index of agreement values or qualitative agreement in the seasonal salinity data trends. For water quality, the index of agreement values were generally low for total nitrogen, ammonia, nitrate, total Kjeldahl nitrogen, total phosphorus, and orthophosphate. Although general trends were adequately simulated at specific stations, particularly for Bushy Park Reservoir, the model-simulated fit was low across all the constituents described above with index of agreements usually below 0.50. A limitation for simulating nutrient concentrations across the model domain was the lack of characterization for the constituents directly entering Bushy Park Reservoir, or the lack of data directly attributed to the boundary condition (for example, the Cooper River). The other two calibrated water-quality constituents (besides the nutrients mentioned above) were dissolved oxygen and chlorophyll a . Dissolved oxygen varied from index of agreement values from 0.58 to 0.94 for 11 stations, generally indicating agreement with the available measured data. Chlorophyll a , calibrated for seven stations, had a wider range from 0.11 to 0.74 for the index of agreement. With the current modeling framework, taste-and-odor events, related to cyanobacterial blooms, cannot be directly simulated. However, indirect estimates of cyanobacteria concentrations may be obtained by using the chlorophyll a model outputs, which represent total phytoplankton biomass, and the phytoplankton biovolume data by group (diatoms, green algae, cyanobacteria and others) collected from 2012 to 2015. For the Bushy Park Reservoir modeling framework to be used directly for taste-and-odor issues, cyanobacteria must be simulated and calibrated based on observations of cyanobacteria biomass concentrations. In addition to the cyanobacteria sampling conducted within the reservoir between 2012 and 2015, the new model calibration would also require new algae biomass data-collection efforts to characterize the external sources of cyanobacteria entering the Bushy Park Reservoir from tributaries, as well as the internal cycling, production, and decay of cyanobacteria in the hydrologic system. Further improvements to the EFDC model would include expanding the collection of boundary condition datasets, such as water-quality monitoring to determine improved nutrient loads into the model domain. Along with improved water-quality monitoring for the major boundary conditions, continuous discharge, for both Foster Creek and the Back River, would further constrain the flow balance and the loads into Bushy Park Reservoir. In addition to better boundary-condition characterization, it is important to better characterize possible shortcomings specifically to the model domain, such as the grid resolution, bathymetry, and numerical hydrodynamic errors. Further consideration of the model may involve a sensitivity analysis to determine if errors in the simulation outputs, such as discharge, water-surface elevations, and salinity, were more likely caused by poor boundary condition characterization or, specifically, the model setup. Three model scenarios were run with the revised Bushy Park Reservoir model: (1) reduced withdrawals from one of the large intake-discharge locations for Bushy Park Reservoir, the Williams Station; (2) elevated (above background levels) ocean water level causing saltwater intrusion from the ocean through Durham Canal into Bushy Park Reservoir; and (3) overtopping of the Back River Dam at the southernmost end of Bushy Park Reservoir. For the reduced withdrawals scenarios, the largest shift in flow resulted near the Williams Station intake, with the next largest flow change at the southern end of Bushy Park Reservoir, and a net increase in flow out of the Bushy Park Reservoir to the Cooper River by way of the Durham Canal. The effect resulting from scenario 3 on water quality and salinity was small, with larger increases for dissolved oxygen than other constituents at several monitoring stations. For the two scenarios related to saltwater intrusion (including dam overtopping), the changes in salinity generally were found to dissipate in the following 2 weeks and generally back to baseline salinity conditions within 3 months. This result did vary depending on the severity of the storm or length of the dam overtopping event.

South Carolina↗

The geochemistry of environmentally important trace elements in UK coals, with special reference to the Parkgate coal in the Yorkshire–Nottinghamshire Coalfield, UK

The Parkgate coal of Langsettian age in the Yorkshire–Nottinghamshire coalfield is typical of many coals in the UK in that it has a high sulphur (S) content. Detailed information on the distribution of the forms of S, both laterally and vertically through the seam, was known from previous investigations. In the present work, 38 interval samples from five measured sections of the coal were comprehensively analysed for major, minor and trace elements and the significance of the relationships established using both raw and centered log transformed data. The major elements are used to quantify the variations in the inorganic and organic coal components and determine the trace element associations. Pyrite contains nearly all of the Hg, As, Se, Tl and Pb and is also the major source of the Mo, Ni, Cd and Sb. The clays contain the following elements in decreasing order of association: Rb, Cs, Li, Ga, U, Cr, V, Sc, Y, Bi, Cu, Nb, Sn, Te and Th. Nearly all of the Rb is present in the clay fraction, whereas for elements such as V, Cu and U, a significant amount is thought to be present in the organic matter, based on the K vs trace element regression equations. Only Ge, and possibly Be, would appear to have a dominant organic source. The trace element concentrations are calculated for pyrite, the clay fraction and organic matter. For pyrite it is noted that concentrations agree with published data from the Yorkshire–Nottinghamshire coalfield and also that Tl concentrations (median of 0.33 ppm) in the pyrite are greater than either Hg or Cd. Unlike these elements, Tl has attracted less attention and possibly more information is needed on its anthropogenic distribution and impacts on man and the environment. A seawater source is thought to be responsible for the high concentrations of S, Cl and the non-detrital trace elements in the Parkgate coal. Indicative of the seawater control is the Th/U ratio, which expresses the detrital to non-detrital element contributions. Using other elements, similar ratios can be calculated, which in combination offer greater interpretative value.

Yorkshire–Nottinghamshire coalfield↗

Establishment of baseline cytology metrics in nestling American kestrels (Falco sparverius): Immunomodulatory effects of the flame retardant isopropylated triarylphosphate isomers

Avian populations must mount effective immune responses upon exposure to environmental stressors such as avian influenza and xenobiotics. Although multiple immune assays have been tested and applied to various avian species, antibody-mediated immune responses in non-model avian species are not commonly reported due to the lack of commercially available species-specific antibodies. The objectives of the present study were to advance methods for studying wild bird immune responses and to apply these to the evaluation of cytological responses after exposure of American kestrels, Falco sparverius, to a commercial flame retardant mixture containing isopropylated triarylphosphate isomers (ITP). Hatchlings were gavaged daily with safflower oil or 1.5 ug/g bw/day of ITP suspended in safflower oil, then bled on days 9, 17, and 21. The ITP treatment group ( n = 18) and a subset of controls (Poly I:C treatment group; n = 10) were injected on days 9 and 15 with a synthetic analog of viral double-stranded RNA, polyinosinic:polycytidylic acid (Poly I:C), a toll-like receptor ligand and synthetic viral mimic, and responses compared to a sham injected control group (n = 8). The hypotheses tested whether kestrels showed immunological differences among treatment groups, genetic sex, and/or white blood cell (WBC) subpopulation type over time. A flow cytometry (FCM) gating strategy categorized heterophils (H), lymphocytes (L), and monocytes (M) and their proportions, and measured relative fluorescence in response to anti-chicken CD4 binding. Fluorescent cell surfaces and some granular/vacuolar inclusions were visualized by epifluorescence microscopy. A fourth subpopulation with higher levels of granularity than M but less than H became increasingly apparent with time and was gated along with the H subpopulation; its frequency of occurrence was lowest in the ITP group ( P = 0.0023). The percentages of cells differed among treatment groups, days, and sexes ( P = 0.0001). For both sexes, percentages of H and L were higher than M in control and Poly I:C. In the ITP group, L percentages were higher than H and M ( P = 0.0457), and H and L were higher than M on days 9 and 21 ( P = 0.0001). The ratios of H:L and H:WBC, indicators of robust immunity, were also higher on days 9 and 21 than on 17 ( P = 0.0079). For each sex, the highest levels of activity measured by FCM geometric means (GEO) of fluorescence (indicative of antibody binding) were observed on day 9 ( P = 0.0001 female, and P = 0.0011 male) in H over both L and M ( P < 0.0001 for each). In males, GEO of the Poly I:C group was higher than that of the ITP group ( P = 0.0374), with no difference observed among females over all days. By using a FCM algorithm for population comparisons of fluorescence to investigate binding within H, the T(x) scores indicated higher fluorescence in control and Poly I:C groups over ITP ( P = 0.0001). Unlike chickens, Gallus gallus , which express CD4 primarily on L, kestrels bound the commercial antibody primarily within the gated H subpopulation, suggesting an immunophenotypic difference between taxa, despite a ~60% identity of Falco CD4 amino acid sequences with chicken CD4. The emergent cell subset within the gated H presented dendritic-like cell (DLC) morphological and functional properties, apparently serving as an effector cell. This study adds interpretive context to ecological investigations of infection and of potential immunomodulation by emerging compounds, whereby the early innate responses are mediated by the various cell subsets serving as useful quantitative markers of immunological condition. Data showed that dietary exposure to ITP was immunosuppressive for male and female kestrels over the course of the experiment, reducing DLC frequency compared to the Poly I:C controls. Heterophils and DLC were important in facilitating innate immunological responses.

Environment International↗