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Case definitions for wildlife diseases

Welcome to the first manual of “Case Definitions for Wildlife Diseases,” a “living” electronic publication. The plan is to add and update this manual’s case definitions periodically as warranted; thus, this manual will never be completed, and readers should download the latest versions of specific chapters (that is, definitions) when available. Constructive suggestions from readers are welcome and will help guide adjustments as this project progresses. The purpose of this manual is to provide case definitions for selected diseases of importance to wildlife in Canada and the United States. Case definitions provide standard sets of criteria for classifying the degree of certainty of a particular diagnosis and help improve surveillance data quality and comparability. Better data and standardization allow for improved data sharing, which increases geographic and species surveillance coverage and permits more robust analyses. The definitions included in this manual have been developed by veterinary pathologists, epidemiologists, and wildlife biologists primarily from the U.S. Geological Survey National Wildlife Health Center (NWHC) and Canadian Wildlife Health Cooperative (CWHC). Pathologists from each organization reviewed and finalized the definitions. Each case definition has been peer reviewed by two scientific experts before publication. This manual begins with the case definition template. This generic template includes four sections: “Individual, Place, and Time Criteria for Diagnosis and Testing,” “Field Criteria for Diagnosis,” “Laboratory Criteria for Diagnosis,” and “Epidemiological Linkage Criteria for Diagnosis” and can be used to guide development of new case definitions. Information in each section is then combined to provide an overall case classification. Disease diagnoses are classified as “Confirmed,” “Presumptive,” or “Suspected;” and evidence of a pathogen or toxin is classified as “Exposed” or “Present/Detected.” Each subsequent chapter is then a case definition for a specific disease of wildlife, and infectious and non-infectious diseases are included.

Techniques and Methods

High-resolution magnetic survey using an unoccupied aerial vehicle to constrain buried lava flow geometry, volume, and eruptive history of Little Cones, Crater Flat, Nevada

Magnetic surveys are an important tool used to augment geologic mapping in distributed volcanic fields. Using magnetic anomalies, it is possible to model the geometry of shallowly buried volcanic features, such as conduits, sills, and lava flows. This subsurface mapping is important for understanding eruption dynamics and emplacement of lava flows, and it sometimes reveals buried volcanoes no longer visible at the surface. These data are critical to better interpret the numbers, styles, and magnitudes of eruptions in distributed volcanic fields and their associated volcanic hazards. New advances in unoccupied aerial vehicles (UAVs) offer an attractive middle range of resolution and aerial coverage between ground-based magnetic surveys and aeromagnetic surveys. Here, we present the results of a UAV fluxgate magnetic survey of the Little Cones, Nevada, scoria cones, which have been the target of previous ground and aeromagnetic surveys. The magnetic anomalies at Little Cones are of interest because the surrounding alluvium conceals lava flows that erupted from Little Cones, making it very difficult to understand the volume and morphology of lava flows from geologic mapping alone. Nonlinear inversion of UAV-collected magnetic data were used to model the thickness and morphology of buried Little Cones’ lava flows with higher precision than achieved previously. The sequence of events and calculated flow characteristics are then interpreted. The total volume of Little Cones, including concealed lava flows, is approximately 0.016 cubic kilometer, and the initial sheet flow erupted in less than 24 hours. The findings presented herein demonstrate that UAV-based magnetic surveys are a reliable method of data collection and an efficient alternative to other survey methods, facilitating development of a three-dimensional perspective of distributed volcanic fields.

Nevada

The 1912 Ms 7.2 earthquake in the Denali region of central Alaska

The 2002 M w 7.9 earthquake in central Alaska ruptured 340 km on three faults—Susitna Glacier thrust fault, Denali fault, Totschunda fault—crossing both the Richardson Highway and the Alaska Pipeline. Its occurrence prompted renewed interest in historical large earthquakes that possibly originated on the Denali fault. One of these earthquakes was a M s 7.2 event on July 7, 1912, which we revisit with two approaches: (1) probabilistic relocation of the epicenter using globally recorded arrival times, and (2) compilation and reassessment of shaking intensity reports to estimate a macroseismic epicenter. Our preferred instrumental epicenter is west of the Parks Highway and in agreement with the maximum‐reported shaking, which was from the Parker–Browne expedition of Denali. We also relocated a M s 6.4 aftershock, whose epicenter is 11 km from the mainshock. Candidate faults for the 1912 earthquake include the Denali fault, the McLeod Creek thrust fault, and the Kantishna Hills thrust fault. Future analysis of active faults, paleoseismic results, 1912 instrumental data, and 1912 felt reports may help in interpreting the fault and mechanism of the 1912 earthquake.

Alaska

Map of topographic lineaments interpreted as recent surface ruptures along the Bennett Valley and Southern Maacama Fault Zones, Sonoma County, California

This study documents lidar-illuminated topographic lineaments interpreted as evidence of recent surface fault ruptures and surface ruptures related to distributed deformation along the Bennett Valley Fault Zone and the southernmost Maacama Fault Zone in the northern San Francisco Bay area (fig. 1, on map sheet). Together, these fault zones form a structural connection across a right stepover between the main Maacama Fault Zone and the Rodgers Creek Fault, overlapping principal strands of the San Andreas plate boundary system north of San Francisco Bay (figs. 1, 2, on map sheet) that accommodate about a quarter of the ~40 millimeters per year of regional dextral tectonic slip (Parsons and others, 2013). Although much of the Bennett Valley Fault Zone is seismically active (McLaughlin and others, 2012; Sowers and others, 2010), only the north end of the fault zone (the “Spring Valley strand,” indicated on southern map panel of map sheet and labeled “D” in figure 2, on map sheet) was previously known to have youthful geomorphic expression and to displace Holocene deposits (McLaughlin and others, 2008; Sowers and others, 2010; Sowers and others, 2016). Holocene activity along the length of the Bennett Valley Fault Zone and southernmost Maacama Fault Zone, with possible implications for rupture propagation, continuity, and slip transfer, had not been identified. However, fault splays that project eastward from the Rodgers Creek Fault have been mapped and hypothesized to accommodate slip transfer to the Bennett Valley Fault Zone (Hecker and Randolph Loar, 2018). The generally subtle and distributed nature of surface-rupture evidence along the Bennett Valley and southernmost Maacama Fault Zones, and extensive vegetation cover, had left recent faulting previously unmapped along most of the zone. The map presented here represents a new compilation of inferred surface-rupture features detected using high-resolution topographic lidar data from an airborne lidar survey of Sonoma County, California (OpenTopography, 2014). These data, which enable subtle topographic features to be discerned, indicate that recent (likely Holocene) surface ruptures extend throughout the Bennett Valley and southernmost Maacama Fault Zones. The rupture-lineament map was created using a GIS (geographic information system) framework and is included herein as an image map at a scale of 1:36,000 and as digital datasets (included as supplemental information to this report). The mapping is intended to lay the groundwork for future studies designed to better characterize how plate-boundary slip is accommodated on this important and complex system of faults.

California

Overview of the Cenozoic geology of the northern Harrat Rahat volcanic field, Kingdom of Saudi Arabia

The Harrat Rahat volcanic field, located in the west-central part of the Kingdom of Saudi Arabia, is one of the larger Cenozoic harrats among the more than 17 harrats situated upon the Arabia Plate. The map plate contained herein shows, at a scale of 1:100,000, the mapped volcanic geology of northern Harrat Rahat, which consists of the northernmost one-fifth of Harrat Rahat. Northern Harrat Rahat has an area of about 3,340 square kilometers (km 2 ), of which 2,567 km 2 is covered by Harrat Rahat volcanic rocks and deposits, and it encompasses more than 900 exposed vents (that is, craters, cryptodomes, maars, and scoria cones), 289 of which are isolated by younger volcanic deposits and have not been correlated with the 234 volcanic rock units distinguished by geologic mapping. Northern Harrat Rahat is of special interest owing to its proximity to the city of Al Madinah al Munawwarah, which sits within, and is continuing to expand southward over, the north end of the volcanic field. Al Madinah is home to an expanding population, currently at more than 2 million residents, together with the intermittent addition of approximately 3 million pilgrims during Hajj and Umrah (religious visitations). The center of Al Madinah is less than 8 km from lava flows of the only confirmed historically documented eruption, which occurred in 1256 C.E. (654 A.H.). Earlier prehistoric lava flows also encroached into the area of the present-day city limits, as demonstrated by volcanic rocks exposed widely throughout the city in roadcuts, parks, and excavations for new buildings, although no evidence has been found of any other than the 1256 C.E. lava having reached that area during times of human habitation. Geologic mapping was undertaken by the U.S. Geological Survey in collaboration with the Saudi Geological Survey. The features of primary interest within the map area are scoria cones, lava flows, lava domes, craters, and pyroclastic deposits from the Quaternary, which have compositions of basalt, hawaiite, mugearite, benmoreite, and trachyte. The geologic mapping was published by Downs and others (2019) on a single sheet at 1:75,000 scale and two detailed sheets at 1:25,000 scale, accompanied by detailed explanations of the geology. This report presents the geology on a single sheet at 1:100,000 scale and provides condensed geologic explanations for the convenience of readers of this volume. Some minor errors of nomenclature and lava source regions that do not change fundamental interpretations have been corrected herein.

Professional Paper

Resurvey of the Marble Canyon and Bridge Canyon dam sites in Grand Canyon National Park—Changes in sediment storage and evidence supporting the occurrence of bedrock incision through the mid-20th century

The Bureau of Reclamation developed an extensive plan for a network of dams, water tunnels, and hydropower plants in and around Grand Canyon, Arizona, in the 1940s through 1960s. The two largest of these planned dams were the Marble Canyon and Bridge Canyon Dams on the Colorado River. Though these dams were ultimately never built, Reclamation conducted extensive topographic, bathymetric, and subsurface exploration work at the sites proposed for these dams in the 1940s and 1950s. Resurveys of these dam sites were conducted between 1998 and 2021 to determine the changes in sediment storage at these dam sites caused by the upstream construction and operation of Glen Canyon Dam and by the recession of Lake Mead, the reservoir impounded by Hoover Dam. The resurveys of the Marble Canyon dam sites indicate that the post-1950s changes in sediment storage at these dam sites are broadly consistent with flux-based estimates of voluminous sand erosion from Marble Canyon since the 1963 closure of Glen Canyon Dam. These resurveys also suggest that the pre-dam longitudinal variation in sediment thickness over bedrock played a key role in determining the locations of the sand erosion induced by Glen Canyon Dam; more sand eroded from locations where more sand was present in the 1950s. The resurvey of the Bridge Canyon dam sites indicates that the Colorado River’s incision of the Lake Mead delta is regulated both by bed-sediment grain size and downstream hydraulic controls. Finally, analyses of bed-sediment thickness and sedimentological data at the dam sites, and observations of bed scour and gravel transport, suggest that sufficient bedrock was exposed to allow bedrock incision during commonly recurring pre-dam snowmelt floods that entrained small boulders into transport.

Arizona

Assessment of water levels, nitrate, and arsenic in the Carson Valley Alluvial Aquifer and the development of a data visualization tool for the Carson River Basin, Nevada

Residents of Carson Valley, Douglas County, Nevada, rely on the basin-fill alluvial aquifer underlying the valley for drinking water. Since the 1980s, groundwater levels and water-quality data have been collected to monitor the status of the aquifer system and to assist in planning efforts to address current (2024) and future demand. The U.S. Geological Survey (USGS), in cooperation with Douglas County, Nevada, evaluated trends in water levels, nitrate, and arsenic concentrations from a network of monitoring and domestic wells in Carson Valley. This work also assessed the monitoring well network to determine the suitability of wells for characterizing the occurrence of arsenic in the groundwater. Monitoring of constituents, such as nitrate and arsenic concentrations, is needed to assess changes in contaminant distribution and to evaluate the effect that changing land use and groundwater pumping has on their occurrence and transport. Results of the trend analysis indicate water levels are declining ( p <0.05) in 17 of 26 selected monitoring wells (65 percent). Areas with the largest change in water levels, with more than 20 feet of declines, were within the community areas of Johnson Lane, Ruhenstroth, South Agricultural, East Valley, and Fish Springs. Variations in water levels measured in wells from the Central Agricultural, Minden, Foothill, Alpine County (one well), and Gardnerville Ranchos areas show periods of increase and decrease over time, but they also maintain long-term declining trends ( p <0.05). Increases in nitrate concentrations in groundwater samples collected from 9 out of 14 selected monitoring wells (64 percent) are statistically significant ( p <0.05) within the Ruhenstroth, Gardnerville Ranchos, East Valley, Genoa, and Johnson Lane community areas. Samples collected from a well in Indian Hills/Jacks Valley indicated a decreasing trend in nitrate concentration over time. Nitrate concentrations in samples collected from wells in East Valley, Genoa, Johnson Lane, and Indian Hills/Jack Valley were consistently low (less than 3 milligrams per liter [mg/L]) and stable. Nitrate concentrations from selected wells in Johnson Lane and Garnerville Ranchos exceeded the U.S. Environmental Protection Agency (EPA) maximum contaminant level (MCL) of 10 mg/L (as nitrogen) and have trends that are increasing over time. In 2022, a sample collected from Johnson Lane had a concentration (7.3 mg/L) below the MCL with an increasing trend over time. Temporal trend analyses for groundwater arsenic concentrations in Carson Valley could not be done because of a lack of temporal data. However, using available historical data, arsenic concentrations seem to be greater in groundwater from wells located on the eastern and northern areas of the valley than in wells located on the western or southern areas. Groundwater arsenic concentrations exceed 5 micrograms per liter (μg/L) in most samples collected from wells in Johnson Lane, Airport, Central Agricultural, and East Valley areas and in many cases exceed the U.S. Environmental Protection Agency (EPA) MCL of 10 μg/L. Data indicate that groundwater from domestic wells screened at deeper intervals are likely more vulnerable to elevated arsenic concentrations than shallower wells. A groundwater network evaluation for Carson Valley identified potential modifications in the sampling locations and frequency to better understand the effect of groundwater pumping in communities where municipal and domestic demand are greatest, potentially enhancing understanding of contaminant transport in these areas. Potential modifications to the active well network include reducing the frequency of sample collection from existing network wells (6 out of 11) that have consistently shown low and stable nitrate concentrations, adding wells in areas where data are sparse, and increasing the number of wells in areas with elevated groundwater nitrate concentrations. Including the analysis of arsenic in samples from the active groundwater monitoring well network will provide more detail on the temporal and spatial variability of arsenic concentrations. A visualization tool for the Carson River Basin was developed to provide access to discrete and near real-time hydrologic and water-quality data. The Carson River Basin Hydro Mapper (CBH; U.S. Geological Survey, 2023b) shows active and historical discrete water levels measured by the USGS and the State of Nevada Division of Water Resources, discrete groundwater nitrate and arsenic concentration data collected by the USGS, near real-time streamflow, and surface water levels for select waterbodies. The hydrologic data in the CBH provides resource managers, the public, and the scientific community with an easily accessible tool to present and communicate the most up-to-date information available about local and basin-wide water resources.

Nevada

Hydrologic investigations and a preliminary conceptual model of the groundwater system at North Penn Area 1 Superfund Site, Souderton, Montgomery County, Pennsylvania

The U.S. Geological Survey (USGS) conducted hydrogeologic investigations, reviewed existing data, and developed a preliminary conceptual model of the groundwater system as part of technical support of the U.S. Environmental Protection Agency (EPA) at the North Penn Area 1 Superfund Site (hereafter, the NP1 Site) located within the Borough of Souderton in Montgomery County, Pennsylvania. Field work and monitoring took place during 2012–18. The area is underlain by sedimentary formations that form a fractured-rock aquifer used for drinking water and industrial supply. The EPA placed the Site on the National Priorities List in 1989, identifying tetrachloroethylene (PCE) and trichloroethylene (TCE) as contaminants of concern. During 2012–18, the USGS conducted field activities that included drilling an 82-foot (ft)-deep monitoring well (MG 2220) in 2016, reconstructing a 208-ft-deep former industrial production well (MG 668 [Granite Knitting Mill]), and collecting borehole geophysical and video logs and water levels from those and five additional wells, which ranged in depth from about 50 to 200 ft below land surface. Continuous water levels were collected during 2014–17, and a synoptic set of water levels were measured in April 2018 in the seven wells. The borehole geophysical logs (caliper, acoustic televiewer, natural gamma, single-point resistance, vertical flow, and fluid temperature and resistivity) and borehole video logs in the seven wells were evaluated to assess potential for lithologic correlation and to identify and describe water-bearing features, which included both low- and high-angle fractures and other openings oriented along dipping bedding planes, joints, or possible faults. Borehole geophysical logs collected by USGS in 1992 in a 300-ft-deep former production well near the Site were also evaluated. Few to no distinctive features were identified on geophysical logs (natural gamma and single-point resistance) that could be used for correlation, thus limiting this approach to determining local geologic structure. Extensive fracturing in the upper 62 ft of monitoring well MG 2220 indicates that the well was likely drilled through a zone of faulting, and other evidence of faulting is present in the area near the Site. Assessment of continuous water levels showed hydraulic connections among some wells as indicated by rising or falling water levels in response to changes in pumping rates at nearby wells. A map of water levels measured in April 2018 indicates potential for groundwater flow generally toward the stream to the south and southwest of the Site, but the limited water-level data are insufficient to describe vertical groundwater gradients or lateral gradients in any detail. Review of 1999–2022 volatile organic compound (VOC) monitoring data collected by the Pennsylvania Department of Environmental Protection for five monitoring wells indicates that the highest groundwater concentrations of PCE and TCE were found in samples from extraction well MG 2201 (S-1) downgradient from, and nearest to, the previously identified Site contaminant source area, and these concentrations fluctuated through time. PCE concentrations were higher than TCE concentrations in samples from all five monitoring wells and were much higher than TCE concentrations in samples from extraction well MG 2201 (S-1). Temporally variable recharge is a possible factor affecting observed fluctuations in PCE concentrations in groundwater samples from well extraction MG 2201 (S-1), as indicated by a general inverse relation between PCE concentrations and water levels in a nearby long-term observation well. The PCE concentration of 1,830 micrograms per liter (μg/L) in a May 2018 water sample from monitoring well MG 2220 was more than four times the PCE concentration of 444 μg/L in a December 2017 sample from the nearby extraction well MG 2201 (S-1), which is open to fewer fractures. Low concentrations of VOCs were measured in surface water at two stream sites downgradient from wells with the highest groundwater VOC concentrations at the Site, indicating that discharge of contaminated groundwater to the stream is likely. Development of a conceptual model of the groundwater system was constrained by limited data. In areas with no pumping, groundwater-flow directions generally are thought to be controlled by topography and geologic structure (bedding orientation) and likely to the south and southwest of the Site, with local flow directions affected by orientations of fractures, joints, and local faults. Additional investigations that could help improve the conceptual model of the groundwater system and help delineate the extent of groundwater contamination and its transport are discussed.

Pennsylvania

Modeling seawater intrusion along the Alabama coastline using physical and machine learning models to evaluate the effects of multiscale natural and anthropogenic stresses

Seawater intrusion threatens groundwater resources in coastal regions, including southern Baldwin County, Alabama, where the freshwater-saltwater interface dynamics remain poorly understood. To address this gap, this study uses combined physics-based and machine-learning models to quantify seawater intrusion caused by natural (storm surges) and anthropogenic (human activities) perturbations. The long short-term memory network and wavelet analysis were used to assess vertical aquifer vulnerabilities, revealing that the shallow part of the Coastal lowlands aquifer system (CL1) in the southern Baldwin County region is more susceptible to sea level rise and groundwater extraction than deeper aquifers. Based on these findings, a cross-sectional numerical model (physics approach) for the CL1 aquifer was developed to evaluate tidal and storm surge effects, using Tropical Storm Claudette (June 2021) as a case study. Results showed that tidal fluctuations had a minimal impact on the saltwater-freshwater interface location, whereas storm surges caused substantial inland movement, with effects lasting for nine months. The steady-state version of the three-dimensional (3D) physical model predicted seawater intrusion across the entire area, and convolutional neural network-based modeling further validated the model results. The 3D physical model was also applied to a smaller area to assess human impact on the saltwater interface due to two groundwater pumping scenarios (± 50% of the baseline pumping rate). Results revealed that a 50% increase in groundwater withdrawals caused seawater to advance ~ 320 m inland, whereas a 50% reduction led to a ~ 270-meter retreat. This study highlights the vulnerability of Alabama’s shallow coastal aquifers to seawater intrusion due to storm surges and human activities, and demonstrates that combining physics-based models with machine learning approaches can improve groundwater predictions, though its accuracy depends on the availability of site-specific data.

Alabama

Recent scientific contributions by the U.S. Geological Survey in the San Francisco Bay and Sacramento–San Joaquin Delta Estuary

Introduction The San Francisco Bay and Sacramento–San Joaquin Delta Estuary (hereafter, Bay-Delta) is the largest estuary on the West Coast of the United States. The Bay-Delta covers more than 1,600 square miles and drains a watershed of more than 75,000 square miles, which is greater than 40 percent of California. The region surrounding the Bay-Delta is home to about 10 million people, and its habitats (fig. 1) support more than 800 plant and animal species. The waterways of the Bay-Delta are the central hub of California’s extensive freshwater delivery system, supplying water to more than 27 million Californians and 4 million acres of farmland in the Central Valley. The U.S. Geological Survey (USGS) is the primary science agency of the U.S. Department of the Interior, providing a broad range of Earth, water, biological, and mapping data and expertise to inform natural resource management across the country. This fact sheet focuses on research conducted by the USGS in the Bay-Delta region, mostly within the past 5 years. The fact sheet is organized across five major themes: water flow and water quality, fish and wildlife, wetland restoration, invasive species, and hazards. In each of these areas, the USGS works closely with Federal, State, and local agencies; academia; and non-governmental organizations to provide objective, evidence-based science. The data and knowledge gained from USGS research and monitoring are publicly available and are routinely used by agencies, including the U.S. Bureau of Reclamation, U.S. Army Corps of Engineers, U.S. Fish and Wildlife Service, California Department of Water Resources, California Department of Fish and Wildlife, California State Water Resources Control Board, Delta Stewardship Council, and many additional organizations and stakeholders to inform management of the Bay-Delta region and its resources.

California

Estimation of reservoir storage capacity and geomorphic change detection analysis from a multibeam bathymetric survey of Randy Poynter Lake, Rockdale County, Georgia

Rockdale County Department of Water Resources has a directive to update estimates of the reservoir storage capacity of Randy Poynter Lake, located in northern Georgia, and to assess recent sedimentation and associated storage capacity loss. In 2022, the U.S. Geological Survey completed a multibeam bathymetric survey of Randy Poynter Lake to update storage capacity estimates and to quantify storage capacity change since the first multibeam bathymetric survey in 2012 in consideration of estimated errors inherent to bathymetric surveys. Data from the 2022 survey were used to generate contours of the reservoir as well as compute storage capacity at regular increments of water-surface elevation. Storage capacity comparisons between 2012 and 2022 at Randy Poynter Lake show minimal changes that are within the estimated uncertainties, with consistent or slightly increased storage capacities observed at most water-surface elevations and reductions observed at the remaining few elevations. Comparison of the multibeam bathymetric data collected in 2012 with data collected in 2022 further allowed for a formal geomorphic change detection analysis to map, quantify, and infer causation of morphological change over time with respect to a level of detectable change. The volume change in Randy Poynter Lake for the decade between 2012 and 2022 was slightly net-depositional and within the estimated uncertainty. The spatial distribution of sediment deposition was primarily concentrated in the northern portion of the lake, where the principal tributary flows into Randy Poynter Lake. The results of the geomorphic change analysis were used to further understand the future implications to storage capacity change. Despite the challenges of confirming systematic biases because of uncertainties exceeding the observed changes, insights from the study help predict long-term reservoir sediment accumulation, indicating a reservoir half-life extending about 650 years from 2022 on the basis of the current sediment yield estimates.

Georgia

Status of water-quality conditions in the United States, 2010–20

Degradation of water quality can make water harmful or unusable for humans and ecosystems. Although many studies have assessed the effect of individual constituents or narrow suites of constituents on freshwater systems, no consistent, comprehensive assessment exists over the wide range of water-quality effects on water availability. Using published studies, data, and models completed at regional or national scales in the United States during 2010–20, this chapter moves towards a comprehensive assessment by summarizing how selected anthropogenic and geogenic water-quality constituents affect national-scale water availability for human and ecosystem needs. Several types of human health, agricultural, ecological, and beneficial-use standards or thresholds were used to provide context for categorizing surface-water and groundwater quality. Water availability for human and ecological use is limited by elevated concentrations of geogenic and anthropogenic constituents in surface and groundwater. Elevated concentrations of five geogenic constituents (arsenic, manganese, strontium, radium, and adjusted gross alpha) are common in groundwater and collectively affect the drinking water supply to over 30 million people. Surface water sourced drinking water supplies are impaired in about a third of assessed stream miles, most commonly because of non-mercury metals and salinity. Health-based violations at community water systems may disproportionately affect socially vulnerable communities. Ecological water uses are predominantly limited by nutrients, sediment, temperature, pathogens, salinity, and pesticides. Water availability for human and ecological use is adversely affected by human activities including human contaminant sources (for example, wastewater, agriculture), processes (for example, dredging, groundwater pumping), or permanent landscape modifications (for example, dams, urbanization). Primary contaminant sources vary spatially and include fertilizer and manure, atmospheric deposition, wastewater treatment plants, urban land, and a range of natural sources. Contaminants of emerging concern, contaminants without regulatory thresholds, and mixtures of geogenic and anthropogenic water contaminants also contribute to ecological degradation and human exposure.

conterminous United States

A review of abrupt permafrost thaw: Definitions, usage, and a proposed conceptual framework

Purpose of Review We review how ‘abrupt thaw’ has been used in published studies, compare these definitions to abrupt processes in other Earth science disciplines, and provide a definitive framework for how abrupt thaw should be used in the context of permafrost science. Recent Findings We address several aspects of permafrost systems necessary for abrupt thaw to occur and propose a framework for classifying permafrost processes as abrupt thaw in the future. Based on a literature review and our collective expertise, we propose that abrupt thaw refers to thaw processes that lead to a substantial persistent environmental change within a few decades. Abrupt thaw typically occurs in ice-rich permafrost but may be initiated in ice-poor permafrost by external factors such as hydrologic change (i.e., increased streamflow, soil moisture fluctuations, altered groundwater recharge) or wildfire. Summary Permafrost thaw alters greenhouse gas emissions, soil and vegetation properties, and hydrologic flow, threatening infrastructure and the cultures and livelihoods of northern communities. The term ‘abrupt thaw’ has emerged in scientific discourse over the past two decades to differentiate processes that rapidly impact large depths of permafrost, such as thermokarst, from more gradual, top-down thaw processes that impact centimeters of near-surface permafrost over years to decades. However, there has been no formal definition for abrupt thaw and its use in the scientific literature has varied considerably. Our standardized definition of abrupt thaw offers a path forward to better understand drivers and patterns of abrupt thaw and its consequences for global greenhouse gas budgets, impacts to infrastructure and land-use, and Arctic policy- and decision-making.

Current Climate Change Reports

Quantitative evaluations of earthquake early warning performance using “Did You Feel It?” and post-alert surveys

We examine responses to the U.S. Geological Survey’s “Did You Feel It?” (DYFI) survey and its companion earthquake early warning (EEW) questionnaire to assess the performance of the U.S. ShakeAlert EEW system directly from the alert recipients’ perspectives. ShakeAlert rapidly detects earthquakes and develops alert information, but as official alert delivery partners issue these alerts, it is thus difficult to determine how many people were alerted and when. We investigate DYFI reports for six California earthquakes that had EEW alerts and substantial responses to the DYFI EEW questionnaire. Comparisons of ShakeAlert predictions to reported intensities demonstrate that magnitude estimation accuracy is not necessarily indicative of ground-motion prediction accuracy. Perceived warning time distributions indicate that estimating maximum-expected warning times using the S-wave arrival is a reasonable assumption when discussing public EEW performance. However, we also find many reports of shorter warning times, late alerts, and missed alerts than expected based on ShakeAlert publication times, suggesting alert delivery latencies are substantial and highly variable. The novelty of our analysis is that we demonstrate that the DYFI EEW survey provides useful EEW efficacy information—independent of the specific alerting pathway—that can be used to inform our choices for conveying EEW performance.

California

Coastal Science Navigator companion guide—Discover the U.S. Geological Survey coastal science products you need

The Coastal Science Navigator is an online gateway to a wide variety of U.S. Geological Survey (USGS) coastal change hazards-related information, data, and tools relevant to stakeholders’ scientific and decision-making needs. The products within the Coastal Science Navigator provide data related to past, present, and future threats to our coastlines. The filter search allows users to see all available products and identify relevant options by time scale, geographic scope, coastal hazard theme, and other filters. The guided search suggests products based on users’ answers to a short series of questions. A comprehensive summary is available for each product. The idea for the Coastal Science Navigator arose in 2020 in response to stakeholder feedback identifying the need for a central source for USGS coastal science information. It was published in July 2023 and initially included 55 products. Regular updates are planned to integrate other existing and new products. This guide introduces some of the many coastal change hazards-related products available through the USGS. In it, we showcase the products included in the Coastal Science Navigator’s initial publication in July 2023. While it is not representative of all the information, tools, and data available, we hope it serves as a compelling snapshot of what the USGS has to offer and encourages you to explore the Coastal Science Navigator to discover more of the products you need. To navigate this guide, the products have been organized by the time scale they are best suited for—past, present, or future—although many products cover multiple time scales. An additional section features software, one of the many product types available as filters within the Coastal Science Navigator. Other products include downloadable data, websites, and geonarratives (web pages that combine text, images, and interactive maps into narratives you can scroll through). Featured geographic scopes are also highlighted within this guide, detailing some of the many regions in which the USGS conducts research and illustrating another way to filter products within the Coastal Science Navigator.

Circular

Cambrian and Ordovician stratigraphy, conodont biostratigraphy, and microfacies analysis to support 1:24,000-scale geologic mapping of the southern Lake Champlain valley, New York and Vermont

Introduction Geologic mapping in the southern Lake Champlain valley of New York and Vermont (fig. 1) has required evaluation of stratigraphic nomenclature used since the early 1900s. The paleogeography of the Cambrian and Ordovician adjacent to the Adirondack Highlands, the high-relief mountains of Proterozoic igneous and metamorphic rocks of northern New York, has impacted the lithostratigraphic succession, facies changes, and several hiatuses that occur within the package of clastic and carbonate rocks that demonstrates overall deepening consistent from the southern to northern Appalachians. The stratigraphic nomenclature used for the geologic mapping of the Cambrian and Ordovician strata of the study area is derived from evaluation of names put forth by previous workers from areas of northern New York and western Vermont. Descriptions of type localities or type sections and other criteria set forth by the North American Stratigraphic Code (North American Commission on Stratigraphic Nomenclature [NACSN], 2021) were consulted. The North American Stratigraphic Code states that lithostratigraphic units, such as the fundamental unit, the formation, be defined by lithic character and be mappable (NACSN, 2021, Article 24). However, some early workers (Walcott, 1912; Kay, 1937; Fisher and Hanson, 1951; Oxley and Kay, 1959) have defined stratigraphic units based on fossil content, which may or may not be facies dependent, and hence may not be mappable as lithostratigraphic units. Although preservation of older names takes priority in stratigraphic nomenclature (NACSN, 2021, Article 7), some do not have adequately defined stratotypes or are located a distance away with different lithologies than that in the study area. Biostratigraphy can be a helpful tool for understanding correlations and facies changes. Herein, conodont biostratigraphy is utilized to date and correlate separate lithologic units. Further, microfacies analyses of units through inspection of petrographic thin sections provide paleogeographic information that helps in understanding the genesis of geologic units.

New York, Vermont

Geologic map of the northwest flank of Mauna Loa volcano, Island of Hawai‘i, Hawaii

Mauna Loa, the largest active volcano on Earth, has erupted 34 times since written descriptions became available in A.D. 1832. The most recent eruption of Mauna Loa occurred on November 27, 2022, after a 38 year hiatus; it lasted for 12 days. Some eruptions began with only brief seismic unrest, whereas others followed several months to a year of increased seismicity. Once underway, Mauna Loa’s eruptions can produce lava flows that may reach the sea in less than 24 hours, severing roads and utilities. For example, lava flows that erupted from the Southwest Rift Zone in 1950 advanced at an average rate of 9.3 kilometers per hour (5.8 miles per hour); all three lobes reached the ocean within ~24 hours. Near the eruptive vents, the flows likely traveled even faster. In terms of eruption frequency, pre-eruption warning, and rapid flow emplacement, Mauna Loa has great volcanic-hazard potential for the Island of Hawai‘i. Volcanic hazards on Mauna Loa can be anticipated, and risk substantially mitigated, by documenting its past activity to refine our knowledge of the hazards, and by alerting the public and local government officials of our findings and their implications for hazards assessments and risk. The map of the north and west flanks of Mauna Loa shows the distribution and relation of volcanic and surficial sedimentary deposits. It incorporates previously reported work published as generalized small-scale maps and a more detailed map. Within the mapped area, lava has flowed from three different source regions: the Northeast Rift Zone (22 percent), the summit (64 percent), and radial vents (14 percent). All three have different points of origin which, in turn, affect the flow characteristics and periodicity of activity. The map area includes the uppermost part of the NERZ and extends from the highest elevation––13,040 feet at the south end of the Kokoolau quadrangle, just below the summit caldera––to the sea northwest and west of the summit. Lava that erupts from the north and west flanks typically flows to the west, northwest, or north, depending on the vent location. Both morphologic lava flow types—‘a‘ā and pāhoehoe—are present. Pāhoehoe units tend to spread out or widen in low-slope regions, such as in the saddle regions between Mauna Loa and Mauna Kea or between Mauna Loa and Hualālai. In comparison, ʻaʻā flows generally produce narrower flow lobes that have higher relief. This map is the fifth in a series of five maps that will cover Mauna Loa volcano. NOTE: Map sheet 1 contains lines and type with overprint. This feature may be turned on or off in the Adobe Acrobat page display preferences.

Hawaii

Coastal barrier resilience and resistance: Analysis and metrics for characterizing coastal state

Barrier islands are shaped by a variety of short- and long-term environmental processes such as storms and relative sea-level rise. These islands, found along the estuarine-marine interface, provide ecosystem services including storm surge and wave attenuation, erosion protection to inland marshes, habitat for fish and wildlife, and recreation. Natural resource managers require actionable information on how barrier island resilience and resistance changes over time to understand how an island’s current state relates to past conditions and to inform restoration prioritization and implementation. The U.S. Geological Survey and The Water Institute collaborated on a study to develop indicators of resilience and resistance for barrier islands in Louisiana. Here, resilience captures island persistence on yearly to decadal time scales, and resistance captures persistence on event time scales of days to weeks. The indicators fall in two categories: Tier 1 Screening Metrics, that can be readily calculated from available data, are easily interpretable as an evaluation of barrier condition, and provide a high-level snapshot of overall barrier resilience and resistance; and Tier 2 Analysis Metrics, which are detailed metrics that required specialized analysis and interpretation and are more applicable to answering specific questions managers may have about barrier state. The research team derived Tier 1 resilience indicators from subaerial land and vegetation cover calculated from publicly available maps and products based on satellite imagery. By benchmarking the total land and vegetation extent against their respective historical maxima, this metric provides a snapshot of an island’s current state in the context of its long-term trajectory. The research team developed Tier 1 resistance indicators based on subaerial island configuration and water level recurrence as a proxy for evaluating island resistance to storms, which are the primary driver of short-term change. These Tier 1 metrics can be analyzed over time to provide a high-level assessment of how an island’s resistance decreases because of elevation loss or sea-level rise or increases due to restoration or natural recovery. The research team developed Tier 2 resilience and resistance indicators and associated analyses to provide detailed information for specific time periods or applications (e.g., wildlife management). These metrics include habitat coverage from high-resolution maps, which show composition changes over time to capture the evolving resilience of specific habitat types; high tide flooding analysis, which evaluate island area relative to specified flooding thresholds to characterize resistance in the short-term or, if analyzed over time, indicate changes in resilience; and hypsometric curve analysis, which allows managers to evaluate island area changes above their own elevation benchmarks of interest and similarly characterize resistance in the short-term or indicate changes in resilience if assessed over time. The research team calculated Tier 1 metrics of the barrier islands and headlands along the coast of Louisiana for the period of 1984 through 2021 and Tier 2 metrics for select times during that period depending on data available and quality. The results were captured in a report card for each barrier, which also includes an overview of the metrics and their interpretation; a restoration and storm history; and Tier 1 and Tier 2 metric analysis, including benchmarking against coastwide and regional values as well as to an island’s pre-restoration trajectory. These report cards provide a readily digestible synthesis of barrier condition and trajectory that coastal managers can use to support restoration prioritization and other decisions.

Louisiana