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At least 649 records · Page 36Linked to original sources

Sources and characteristics of organic matter in the Clackamas River, Oregon, related to the formation of disinfection by-products in treated drinking water

This study characterized the amount and quality of organic matter in the Clackamas River, Oregon, to gain an understanding of sources that contribute to the formation of chlorinated and brominated disinfection by-products (DBPs), focusing on regulated DBPs in treated drinking water from two direct-filtration treatment plants that together serve approximately 100,000 customers. The central hypothesis guiding this study was that natural organic matter leaching out of the forested watershed, in-stream growth of benthic algae, and phytoplankton blooms in the reservoirs contribute different and varying proportions of organic carbon to the river. Differences in the amount and composition of carbon derived from each source affects the types and concentrations of DBP precursors entering the treatment plants and, as a result, yield varying DBP concentrations and species in finished water. The two classes of DBPs analyzed in this study-trihalomethanes (THMs) and haloacetic acids (HAAs)-form from precursors within the dissolved and particulate pools of organic matter present in source water. The five principal objectives of the study were to (1) describe the seasonal quantity and character of organic matter in the Clackamas River; (2) relate the amount and composition of organic matter to the formation of DBPs; (3) evaluate sources of DBP precursors in the watershed; (4) assess the use of optical measurements, including in-situ fluorescence, for estimating dissolved organic carbon (DOC) concentrations and DBP formation; and (5) assess the removal of DBP precursors during treatment by conducting treatability "jar-test" experiments at one of the treatment plants. Data collection consisted of (1) monthly sampling of source and finished water at two drinking-water treatment plants; (2) event-based sampling in the mainstem, tributaries, and North Fork Reservoir; and (3) in-situ continuous monitoring of fluorescent dissolved organic matter (FDOM), turbidity, chlorophyll- a , and other constituents to continuously track source-water conditions in near real-time. Treatability tests were conducted during the four event-based surveys to determine the effectiveness of coagulant and powdered activated carbon (PAC) on the removal of DBP precursors. Sample analyses included DOC, total particulate carbon (TPC), total and dissolved nutrients, absorbance and fluorescence spectroscopy, and, for regulated DBPs, concentrations of THMs and HAAs in finished water and laboratory-based THM and HAA formation potentials (THMFP and HAAFP, respectively) for source water and selected locations throughout the watershed. The results of this study may not be typical given the record and near record amounts of precipitation that occurred during spring that produced streamflow much higher than average in 2010-11. Although there were algal blooms, lower concentrations of chlorophyll- a were observed in the water column during the study period compared to historical data. Concentrations of DBPs in finished (treated) water averaged 0.024 milligrams per liter (mg/L) for THMs and 0.022 mg/L for HAAs; maximum values were about 0.040 mg/L for both classes of DBPs. Although DBP concentrations were somewhat higher within the distribution system, none of the samples collected for this study or for the quarterly compliance monitoring by the water utilities exceeded levels permissible under existing U.S. Environmental Protection Agency (USEPA) regulations: 0.080 mg/L for THMs and 0.060 mg/L for HAAs. DOC concentrations were generally low in the Clackamas River, typically about 1.0-1.5 mg/L. Concentrations in the mainstem occasionally increased to nearly 2.5 mg/L during storms; DOC concentrations in tributaries were sometimes much higher (up to 7.8 mg/L). The continuous in-situ FDOM measurements indicated sharp rises in DOC concentrations in the mainstem following rainfall events; concentrations were relatively stable during summer base flow. Even though the first autumn storm mobilized appreciable quantities of carbon, higher concentrations of DBPs in finished water were observed 3-weeks later, after the ground was saturated from additional rainfall. The majority of the DOC in the lower Clackamas River appears to originate from the upper basin, suggesting terrestrial carbon was commonly the dominant source. Lower-basin tributaries typically contained the highest concentrations of DOC and DBP precursors and contributed substantially to the overall loads in the mainstem during storms. During low-flow periods, tributaries were not major sources of DOC or DBP precursors to the Clackamas River. Although the dissolved fraction of organic carbon contributed the majority of DBP precursors, at times the particulate fraction (inorganic sediment and organic particles including detritus and algal material) contributed a substantial fraction of DBP precursors. Considering just the main-stem sites, on average, 10 percent of THMFP and 32 percent of HAAFP were attributed to particulate carbon. This finding suggests water-treatment methods that remove particles prior to chlorination would reduce finished-water DBP concentrations to some degree. Overall, concentrations of THM and HAA precursors were closely linked to DOC concentrations; laboratory DBP formation potentials (DBPFPs) clearly showed that THMFP and HAAFP were greatest in the downstream tributaries that contained elevated carbon concentrations. However, carbon-normalized "specific" formation potentials for THMs and HAAs (STHMFP and SHAAFP, respectively) revealed changes in carbon character over time that affected the two types of DBP classes differently. HAA precursors were elevated in waters containing aromatic-rich soil-derived material arising from forested areas. In contrast, THM precursors were associated with carbon having a lower aromatic content; highest STHMFP occurred in autumn 2011 in the mainstem from North Fork Reservoir downstream to LO DWTP. This pattern suggests the potential for a link between THM precursors and algal-derived carbon. The highest STHMFP value was measured within North Fork Reservoir, indicating reservoir derived carbon may be important for this class of DBPs. Weak correlations between STHMFP and SHAAFP emphasize that precursor sources for these types of DBPs may be different. This highlights not only that different locations within the watershed produce carbon with different reactivity (specific DBPFP), but also that different management approaches for each class of DBP precursors could be required for control. Treatability tests conducted on source water during four basin-wide surveys demonstrated that an average of about 40 percent of DOC can be removed by coagulation. While the decrease in THMFP following coagulation was similar to DOC, the decrease in HAAFP was much greater (approximately 70 percent), indicating coagulation is particularly effective at removing HAA precursors'likely because of the aromatic nature of the carbon associated with HAA precursors. Several findings from this study have direct implications for managing drinking-water resources and for providing useful information that may help improve treatment-plant operations. For example, the use of in-situ fluorometers that measure FDOM provided an excellent proxy for DOC concentration in this system and revealed short-term, rapid changes in DOC concentration during storm events. In addition, the strong correlation between FDOM values measured in-situ and HAA5 concentrations in finished water may permit estimation of continuous HAA concentrations, as was done here. As part of this study, multiple in-situ FDOM sensors were deployed continuously and in real-time to characterize the composition of dissolved organic matter. Although the initial results were promising, additional research and engineering developments will be needed to demonstrate the full utility of these sensors for this purpose. In conclusion, although DBPFPs were strongly correlated to DOC concentration, some DBPs formed from particulate carbon, including terrestrial leaf material and algal material such as planktonic species of blue-green algae and sloughed filaments, stalks, and cells of benthic algae. Different precursor sources in the watershed were evident from the data, suggesting specific actions may be available to address some of these sources. In-situ measurements of FDOM proved to be an excellent proxy for DOC concentration as well as HAA formation during treatment, which suggests further development and refinement of these sensors have the potential to provide real-time information about complex watershed processes to operators at the drinking-water treatment plants. Follow-up studies could examine the relative roles that terrestrial and algal sources have on the DBP precursor pool to better understand how watershed-management activities may be affecting the transport of these compounds to Clackamas River drinking-water intakes. Given the low concentrations of algae in the water column during this study, additional surveys during more typical river conditions could provide a more complete understanding of how algae contribute DBP precursors. Further development of FDOM-sensor technology can improve our understanding of carbon dynamics in the river and how concentrations may be trending over time. This study was conducted in collaboration with Clackamas River Water and the City of Lake Oswego water utilities. Other research partners included Oregon Health and Science University in Hillsboro, Oregon, Alexin Laboratory in Tigard, Oregon, U.S. Geological Survey National Research Program Laboratory in Denver, Colorado, and the U.S. Geological Survey Water Science Centers in Portland, Oregon, and Sacramento, California. This project was supported with funding from Clackamas River Water, City of Lake Oswego, the U.S. Geological Survey, and the Water Research Foundation.

Oregon↗

Flood-Inundation Maps for Sugar Creek at Crawfordsville, Indiana

Digital flood-inundation maps for a 6.5-mile reach of Sugar Creek at Crawfordsville, Indiana, were created by the U.S. Geological Survey (USGS) in cooperation with the Indiana Office of Community and Rural Affairs. The flood-inundation maps, which can be accessed through the USGS Flood Inundation Mapping Science Web site at http://water.usgs.gov/osw/flood_inundation/ , depict estimates of the areal extent and depth of flooding corresponding to selected water levels (stages) at the USGS streamgage 03339500, Sugar Creek at Crawfordsville, Ind. Near-real-time stages at this streamgage may be obtained on the Internet from the USGS National Water Information System at http://waterdata.usgs.gov/ or the National Weather Service (NWS) Advanced Hydrologic Prediction Service at http://water.weather.gov/ahps/ , which also forecasts flood hydrographs at this site (NWS site CRWI3). Flood profiles were computed for the USGS streamgage 03339500, Sugar Creek at Crawfordsville, Ind., reach by means of a one-dimensional step-backwater hydraulic modeling software developed by the U.S. Army Corps of Engineers. The hydraulic model was calibrated using the current stage-discharge rating at the USGS streamgage 03339500, Sugar Creek at Crawfordsville, Ind., and high-water marks from the flood of April 19, 2013, which reached a stage of 15.3 feet. The hydraulic model was then used to compute 13 water-surface profiles for flood stages at 1-foot (ft) intervals referenced to the streamgage datum ranging from 4.0 ft (the NWS “action stage”) to 16.0 ft, which is the highest stage interval of the current USGS stage-discharge rating curve and 2 ft higher than the NWS “major flood stage.” The simulated water-surface profiles were then combined with a Geographic Information System digital elevation model (derived from light detection and ranging [lidar]) data having a 0.49-ft root mean squared error and 4.9-ft horizontal resolution) to delineate the area flooded at each stage. The availability of these maps, along with Internet information regarding current stage from the USGS streamgage and forecasted high-flow stages from the NWS, will provide emergency management personnel and residents with information that is critical for flood response activities such as evacuations and road closures, as well as for post-flood recovery efforts.

Indiana↗

The Southwestern Pond Turtle (Actinemys pallida) in Baja California, Mexico: New localities and persistent threats

The Southwestern Pond Turtle ( Actinemys pallida ), the only native freshwater turtle in Baja California, is experiencing alarming population declines, echoing global patterns observed in freshwater turtles. We conducted comprehensive field surveys across the major drainages of northwestern Baja California to delineate the species' current distribution, identify critical threats to its persistence, and provide guidance for conservation actions. We documented the continued presence of A. pallida at 27 sites across 10 watersheds, ranging from sea level to 1,525 m in elevation. These include nine historically known sites and 18 newly recorded localities. The most pervasive threats we identified were habitat degradation, the proliferation of invasive aquatic species, and unsustainable water extraction. Despite these pressures, our findings confirm that A. pallida still occupies much of its historical range. However, urgent ecological research is needed to inform evidence-based strategies that ensure the long-term viability of this imperiled species.

Baja California↗

Acute toxicity of six freshwater mussel species (Glochidia) to six chemicals: Implications for daphnids and Utterbackia imbecillis as surrogates for protection of freshwater mussels (Unionidae)

Acute (24-h) toxicity tests were used in this study to compare lethality responses in early life stages (glochidia) of six freshwater mussel species, Leptodea fragilis, U. imbecillis, Lampsilis cardium, Lampsilis siliquoidea, Megalonaias nervosa, and Ligumia subrostrata, and two standard test organisms, Ceriodaphnia dubia and Daphnia magna. Concentrations of carbaryl, copper, 4-nonylphenol, pentachlorophenol, permethrin, and 2,4-D were used in acute exposures to represent different chemical classes and modes of action. The relative sensitivities of species were evaluated by ranking their LC 50 values for each chemical. We used these ranks to determine the extent to which U. imbecillis (one of the most commonly used unionids in toxicity tests) was representative of the tolerances of other mussels. We also calculated geometric mean LC50s for the families Unionidae and Daphnidae. Rankings of these data were used to assess the extent to which Daphnidae can be used as surrogates for freshwater mussels relative to chemical sensitivity. While no single chemical elicited consistently high or low toxicity estimates, carbaryl and 2,4-D were generally the least toxic to all species tested. No species was always the most sensitive, and Daphnidae were generally protective of Unionidae. Utterbackia imbecillis, while often proposed as a standard unionid mussel test species, did not always qualify as a sufficient surrogate (i.e., a substitute organism that often elicits similar sensitivity responses to the same contaminant exposure) for other species of mussels, since it was usually one of the more tolerant species in our rankings. U. imbecillis should be used as a surrogate species only with this caution on its relative insensitivity. ?? 2005 Springer Science+Business Media, Inc.

Archives of Environmental Contamination and Toxico↗

Management strategy evaluation for salmon habitat restoration and hatchery supplementation

A primary challenge in conservation is the evaluation of management actions. For species with complex life histories, this evaluation is particularly challenging, and quantitative models are needed to understand how effects on particular life stages translate to objectives such as an acceptably low extinction risk or large abundance. We modeled the effects of increasing juvenile survival (as would result from habitat restoration) and hatchery supplementation on the achievement of recovery objectives for endangered Chinook salmon ( Oncorhynchus tshawytscha ) in the Wenatchee River Basin of Washington State. We evaluated these actions using simulations with a model that accounted for density-dependence operating in juvenile rearing habitat. Simulations indicated that there were compounding benefits of increasing survival in both natal streams, where juveniles are born, and in downstream areas where a portion of juveniles rear. We also found that the marginal benefit of producing more hatchery fish declined as juvenile survival improved. Simulations suggested that achieving recovery targets for abundance of spring-run Chinook salmon in the Wenatchee River would require more than a 150% increase in juvenile survival, barring increases in survival in other portions of the life cycle. Therefore, comprehensive management focusing on multiple factors affecting survival may be required to meet recovery criteria.

Washington↗

Conservation planning for the Colorado River in Utah

Strategic planning is increasingly recognized as necessary for providing the greatest possible conservation benefits for restoration efforts. Rigorous, science-based resource assessment, combined with acknowledgement of broader basin trends, provides a solid foundation for determining effective projects. It is equally important that methods used to prioritize conservation investments are simple and practical enough that they can be implemented in a timely manner and by a variety of resource managers. With the help of local and regional natural resource professionals, we have developed a broad-scale, spatially-explicit assessment of 146 miles (~20,000 acres) of the Colorado River mainstem in Grand and San Juan Counties, Utah that will function as the basis for a systematic, practical approach to conservation planning and riparian restoration prioritization. For the assessment we have: 1) acquired, modified or created spatial datasets of Colorado River bottomland conditions; 2) synthesized those datasets into habitat suitability models and estimates of natural recovery potential, fire risk and relative cost; 3) investigated and described dominant ecosystem trends and human uses, and; 4) suggested site selection and prioritization approaches. Partner organizations (The Nature Conservancy, National Park Service, Bureau of Land Management and Utah Forestry Fire and State Lands) are using the assessment and datasets to identify and prioritize a suite of restoration actions to increase ecosystem resilience and improve habitat for bottomland species. Primary datasets include maps of bottomland cover types, bottomland extent, maps of areas inundated during high and low flow events, as well as locations of campgrounds, roads, fires, invasive vegetation treatment areas and other features. Assessment of conditions and trends in the project area entailed: 1) assemblage of existing data on geology, changes in stream flow, and predictions of future conditions; 2) identification of fish and wildlife species present and grouping species into Conservation Elements (CEs) based on habitat needs, and: 3) acquisition, review and creation of spatial datasets characterizing vegetation, fluvial geomorphic and human features within the bottomland. Interpretation of aerial imagery and assimilation of pre-existing spatial data were central to our efforts in characterizing resources conditions. Detailed maps of vegetation and channel habitat features in the project area were generated from true color, high resolution (0.3m) imagery flown September 16, 2010. We also mapped channel habitat features at high flow on 1.0-m resolution, publicly available, true color imagery. We obtained additional layers such as land ownership, roads, fire history, non-native vegetation treatment areas, and recreational use features from public sources and project partners. Habitat suitability models were created for groups of terrestrial species by combining spatial datasets with the habitat needs of conservation elements, guided by literature, where available, and extensive use of expert knowledge. Conservation elements for endangered fish species life stages were identified but not modeled. Terrestrial CE’s included: • Riparian Overstory -yellow-billed cuckoo, Bullock’s oriole, black-headed grosbeak, blue grosbeak, warbling vireo, Cooper's hawk, screech owl, saw-whet owl, and bald eagle, (best: tall trees, dense canopy, diverse shrub understory, no tamarisk); • Riparian Understory - southwestern willow flycatcher, common yellowthroat, yellow warbler, yellow-breasted chat, beaver, northern river otter, black-necked garter snake, (best: dense mesic shrubs near still water, no tamarisk); • Bat Feeding - Allen's big-eared bat, Townsend's big-eared bat, fringed myotis, Yuma myotis, big free-tailed bat, spotted bat (best: diverse vegetation, close to still water); • Bat Watering - big free-tailed and spotted bats (best: still water with no tall vegetation); •

Utah↗

An evaluation of tradeoffs in restoring ephemeral vs. perennial habitats to conserve animal populations

Introduction: Habitat loss and degradation pose significant threats to global fish and wildlife populations, prompting substantial investments in habitat creation and restoration efforts. Not all habitats provide equal benefits, leading to challenges in prioritizing restoration actions. For example, juvenile anadromous salmonids require high quality rearing aquatic habitats to achieve the physiological requirements needed to successfully migrate to the ocean. However, there are profound disagreements among anadromous salmon restoration managers whether it is best to focus efforts on restoring in-channel habitats that are available for the entire rearing period or floodplain habitats that, while facilitating greater growth and survival than in-channel habitats, are only available for a few weeks at a time and are typically only activated every two-to-three years. Methods: We used an existing fall-run Chinook salmon decision-support model to evaluate under what conditions floodplain restoration would provide greater benefits than in-channel habitat restoration. The simulations included a wide range of floodplain inundation frequencies and durations and floodplain benefits in the form of increased survival and growth relative to in-channel habitats. Results: The simulations results indicated that in-channel habitat restoration was always the best habitat restoration action when there was no existing in-channel habitat despite simulating a wide range of flood frequency, duration, and growth and survival benefits. Floodplain restoration was generally best when there was sufficient in-channel habitat available to successfully rear most of the juveniles produced by the returning adult salmon. Discussion: We hypothesize that in-channel and floodplain habitats have different roles in salmon population maintenance with in-channel habitats regulating the overall population size and floodplains acting as recurrent resource pulses. Our study provides a quantitative framework to evaluate the benefit of these two habitat types and provides generalizable rulesets that can be used by managers when implementing habitat restoration strategies for species that inhabit both in-channel and floodplain habitats.

California↗

Reinterpreting the Bruun Rule in the context of equilibrium shoreline models

Long-term (>decades) coastal recession due to sea-level rise (SLR) has been estimated using the Bruun Rule for nearly six decades. Equilibrium-based shoreline models have been shown to skillfully predict short-term wave-driven shoreline change on time scales of hours to decades. Both the Bruun Rule and equilibrium shoreline models rely on the equilibrium beach theory, which states that the beach profile shape equilibrates with its local wave and sea-level conditions. Integrating these two models into a unified framework can improve our understanding and predictive skill of future shoreline behavior. However, given that both models account for wave action, but over different time scales, a critical re-examination of the SLR-driven recession process is needed. We present a novel physical interpretation of the beach response to sea-level rise, identifying two main contributing processes: passive flooding and increased wave-driven erosion efficiency. Using this new concept, we analyze the integration of SLR-driven recession into equilibrium shoreline models and, with an idealized test case, show that the physical mechanisms underpinning the Bruun Rule are explicitly described within our integrated model. Finally, we discuss the possible advantages of integrating SLR-driven recession models within equilibrium-based models with dynamic feedbacks and the broader implications for coupling with hybrid shoreline models.

Journal of Marine Science and Engineering↗

Flood-inundation maps for the Saddle River from Rochelle Park to Lodi, New Jersey, 2012

Digital flood-inundation maps for a 2.75-mile reach of the Saddle River from 0.2 mile upstream from the Interstate 80 bridge in Rochelle Park to 1.5 miles downstream from the U.S. Route 46 bridge in Lodi, New Jersey, were created by the U.S. Geological Survey (USGS) in cooperation with the New Jersey Department of Environmental Protection (NJDEP). The inundation maps, which can be accessed through the USGS Flood Inundation Mapping Science Web site at http://water.usgs.gov/osw/flood_inundation , depict estimates of the areal extent and depth of flooding corresponding to selected water levels (stages) at the USGS streamgage at Saddle River at Lodi, New Jersey (station 01391500). Current conditions for estimating near real-time areas of inundation using USGS streamgage information may be obtained on the Internet at http://waterdata.usgs.gov/nwis/uv?site_no=01391500 . The National Weather Service (NWS) forecasts flood hydrographs at many places that are often collocated with USGS streamgages. NWS-forecasted peak-stage information may be used in conjunction with the maps developed in this study to show predicted areas of flood inundation. In this study, flood profiles were computed for the stream reach by means of a one-dimensional step-backwater model. The model was calibrated using the most current stage-discharge relations at the Saddle River at Lodi, New Jersey streamgage and documented high-water marks from recent floods. The hydraulic model was then used to determine 11 water-surface profiles for flood stages at the Saddle River streamgage at 1-ft intervals referenced to the streamgage datum, North American Vertical Datum of 1988 (NAVD 88), and ranging from bankfull, 0.5 ft below NWS Action Stage, to the extent of the stage-discharge rating, which is approximately 1 ft higher than the highest recorded water level at the streamgage. Action Stage is the stage which when reached by a rising stream the NWS or a partner needs to take some type of mitigation action in preparation for possible significant hydrologic activity. The simulated water-surface profiles were then combined with a geographic information system 3-meter (9.84-ft) digital elevation model (derived from Light Detection and Ranging (LiDAR) data) in order to delineate the area flooded at each water level. The availability of these maps, along with Internet information regarding current stage from USGS streamgages and forecasted stream stages from the NWS, provide emergency management personnel and residents with information that is critical for flood response activities, such as evacuations and road closures, as well as for post-flood recovery efforts.

New Jersey↗

Evaluating landscape health: Integrating societal goals and biophysical process

Evaluating landscape change requires the integration of the social and natural sciences. The social sciences contribute to articulating societal values that govern landscape change, while the natural sciences contribute to understanding the biophysical processes that are influenced by human activity and result in ecological change. Building upon Aldo Leopold's criteria for landscape health, the roles of societal values and biophysical processes in shaping the landscape are explored. A framework is developed for indicators of landscape health and integrity. Indicators of integrity are useful in measuring biological condition relative to the condition in landscapes largely unaffected by human activity, while indicators of health are useful in evaluating changes in highly modified landscapes. Integrating societal goals and biophysical processes requires identification of ecological services to be sustained within a given landscape. It also requires the proper choice of temporal and spatial scales. Societal values are based upon inter-generational concerns at regional scales (e.g. soil and ground water quality). Assessing the health and integrity of the environment at the landscape scale over a period of decades best integrates societal values with underlying biophysical processes. These principles are illustrated in two contrasting case studies: (1) the South Platte River study demonstrates the role of complex biophysical processes acting at a distance; and (2) the Kissimmee River study illustrates the critical importance of social, cultural and economic concerns in the design of remedial action plans. In both studies, however, interactions between the social and the biophysical governed the landscape outcomes. The legacy of evolution and the legacy of culture requires integration for the purpose of effectively coping with environmental change.

Journal of Environmental Management↗

Improving ecosystem health in highly altered river basins: A generalized framework and its application to the Mississippi-Atchafalaya River Basin

Continued large-scale public investment in declining ecosystems depends on demonstrations of “success”. While the public conception of “success” often focuses on restoration to a pre-disturbance condition, the scientific community is more likely to measure success in terms of improved ecosystem health. Using a combination of literature review, workshops and expert solicitation we propose a generalized framework to improve ecosystem health in highly altered river basins by reducing ecosystem stressors, enhancing ecosystem processes and increasing ecosystem resilience. We illustrate the use of this framework in the Mississippi-Atchafalaya River Basin (MARB) of the central United States (U.S.), by (i) identifying key stressors related to human activities, and (ii) creating a conceptual ecosystem model relating those stressors to effects on ecosystem structure and processes. As a result of our analysis, we identify a set of landscape-level indicators of ecosystem health, emphasizing leading indicators of stressor removal (e.g., reduced anthropogenic nutrient inputs), increased ecosystem function (e.g., increased water storage in the landscape) and increased resilience (e.g., changes in the percentage of perennial vegetative cover). We suggest that by including these indicators, along with lagging indicators such as direct measurements of water quality, stakeholders will be better able to assess the effectiveness of management actions. For example, if both leading and lagging indicators show improvement over time, then management actions are on track to attain desired ecosystem condition. If, however, leading indicators are not improving or even declining, then fundamental challenges to ecosystem health remain to be addressed and failure to address these will ultimately lead to declines in lagging indicators such as water quality. Although our model and indicators are specific to the MARB, we believe that the generalized framework and the process of model and indicator development will be valuable in an array of altered river basins.

Mississippi-Atchafalaya River Basin↗

Conserving climate-change refugia: Insights from research and practice

As the impacts of anthropogenic climate change increase, conservation of climate-change refugia has become a key strategy for effective environmental stewardship. Over the last 5 years, the field of climate-change refugia conservation has made exciting advances, shifting from concepts and theory to refugia mapping and implementation. However, few studies have advanced to action on the ground; while 84% of studies identified and mapped refugia, only 4% involved implementing management action. Moreover, taxonomic and geographic gaps remain, with most studies focused on terrestrial plants and vertebrates in Europe and North America. Here, we outline impediments to implementation following the steps of the Climate-Change Refugia Conservation Cycle. Based on a systematic literature review, we elucidate advances and obstacles with examples from a diversity of systems and sectors from across the world and highlight emerging work bridging the gap between research and implementation.

Conservation Science and Practice↗

Flood-inundation maps for the Saddle River from Upper Saddle River Borough to Saddle River Borough, New Jersey, 2013

Digital flood-inundation maps for a 4.1-mile reach of the Saddle River from 0.6 miles downstream from the New Jersey-New York State boundary in Upper Saddle River Borough to 0.2 miles downstream from the East Allendale Road bridge in Saddle River Borough, New Jersey, were created by the U.S. Geological Survey (USGS) in cooperation with the New Jersey Department of Environmental Protection (NJDEP). The inundation maps, which can be accessed through the USGS Flood Inundation Mapping Science Web site at http://water.usgs.gov/osw/flood_inundation/, depict estimates of the areal extent and depth of flooding corresponding to select water levels (stages) at the USGS streamgage 01390450, Saddle River at Upper Saddle River, New Jersey. Current conditions for estimating near real-time areas of inundation using USGS streamgage information may be obtained on the Internet at http://waterdata.usgs.gov/nwis/uv?site_no=01390450. The National Weather Service (NWS) forecasts flood hydrographs at many places that are often collocated with USGS streamgages. NWS-forecasted peak-stage information may be used in conjunction with the maps developed in this study to show predicted areas of flood inundation. In this study, flood profiles were computed for the stream reach by means of a one-dimensional step-backwater model. The model was calibrated by using the most current stage-discharge relations (in effect March 2013) at USGS streamgage 01390450, Saddle River at Upper Saddle River, New Jersey, and documented high-water marks from recent floods. The hydraulic model was then used to determine eight water-surface profiles for flood stages at 0.5-foot (ft) intervals referenced to the streamgage datum, North American Vertical Datum of 1988 (NAVD 88), and ranging from bankfull, 0.5 ft below NWS Action Stage, to the upper extent of the stage-discharge rating which is approximately 1 ft higher than the highest recorded water level at the streamgage. Action Stage is the stage which when reached by a rising stream the NWS or a partner needs to take some type of mitigation action in preparation for possible significant hydrologic activity. The simulated water-surface profiles were then combined with a geographic information system 3-meter (9.84 ft) digital elevation model (derived from Light Detection and Ranging (LiDAR) data) in order to delineate the area flooded at each water level. The availability of these maps along with real-time streamflow data and information regarding current stage from USGS streamgages and forecasted stream stages from the NWS provide emergency management personnel and residents with information that is critical for flood response activities, such as evacuations and road closures, as well as for post-flood recovery efforts.

New Jersey↗

Jaguar density estimation in Mexico: The conservation importance of considering home range orientation in spatial capture–recapture

Accurate estimation of population parameters for imperiled wildlife is crucial for effective conservation decision-making. Population density is commonly used for monitoring imperiled species across space and time, and spatial capture–recapture (SCR) models can produce unbiased density estimates. However, many imperiled species are restricted to fragmented remnant habitats in landscapes severely modified by humans, which can alter animal space use in ways that violate typical SCR model assumptions, possibly cryptically biasing density estimates and misinforming conservation actions. Using data from a two-year camera-trapping survey in the Central Pacific Coast region, Mexico, we demonstrate the potential importance to endangered jaguar ( Panthera onca ) conservation of considering non-circular home ranges when estimating population density with SCR. Strong evidence existed that jaguars had elliptical home ranges wherein movements primarily occurred along linearly arranged coastal habitats that the camera array aligned with. Accounting for this movement with the SCR anisotropic detection function transformation, density estimates were 30%–32% higher than estimates from standard SCR models that assumed circular home ranges. Given much of suitable jaguar habitat in Mexico is fragmented and linearly oriented along coastlines and mountain ranges, accommodating irregular space use in SCR may be critical for obtaining reliable density estimates to inform effective jaguar conservation.

Nayarit↗

Flood-inundation maps for a 9.1-mile reach of the Coast Fork Willamette River near Creswell and Goshen, Lane County, Oregon

Digital flood-inundation maps for a 9.1-mile reach of the Coast Fork Willamette River near Creswell and Goshen, Oregon, were developed by the U.S. Geological Survey (USGS) in cooperation with the U.S. Army Corps of Engineers (USACE). The inundation maps, which can be accessed through the USGS Flood Inundation Mapping Science Web site at http://water.usgs.gov/osw/flood_inundation/ , depict estimates of the areal extent and depth of flooding corresponding to selected stages at the USGS streamgage at Coast Fork Willamette River near Goshen, Oregon (14157500), at State Highway 58. Current stage at the streamgage for estimating near-real-time areas of inundation may be obtained at http://waterdata.usgs.gov/or/nwis/uv/?site_no=14157500&PARAmeter_cd=00065,00060 . In addition, the National Weather Service (NWS) forecasted peak-stage information may be used in conjunction with the maps developed in this study to show predicted areas of flood inundation. In this study, areas of inundation were provided by USACE. The inundated areas were developed from flood profiles simulated by a one-dimensional unsteady step‑backwater hydraulic model. The profiles were checked by the USACE using documented high-water marks from a January 2006 flood. The model was compared and quality assured using several other methods. The hydraulic model was then used to determine eight water-surface profiles at various flood stages referenced to the streamgage datum and ranging from 11.8 to 19.8 ft, approximately 2.6 ft above the highest recorded stage at the streamgage (17.17 ft) since 1950. The intervals between stages are variable and based on annual exceedance probability discharges, some of which approximate NWS action stages. The areas of inundation and water depth grids provided to USGS by USACE were used to create interactive flood‑inundation maps. The availability of these maps with current stage from USGS streamgage and forecasted stream stages from the NWS provide emergency management personnel and residents with information that is critical for flood response activities, such as evacuations and road closures as well as for post flood recovery efforts.

Oregon↗

Preparing for a Bsal invasion into North America has improved multi-sector readiness

Western palearctic salamander susceptibility to the skin disease caused by the amphibian chytrid fungus Batrachochytrium salamandrivorans (Bsal) was recognized in 2014, eliciting concerns for a potential novel wave of amphibian declines following the B. dendrobatidis (Bd) chytridiomycosis global pandemic. Although Bsal had not been detected in North America, initial experimental trials supported the heightened susceptibility of caudate amphibians to Bsal chytridiomycosis, recognizing the critical threat this pathogen poses to the North American salamander biodiversity hotspot. Here, we take stock of 10 years of research, collaboration, engagement, and outreach by the North American Bsal Task Force. We summarize main knowledge and conservation actions to both forestall and respond to Bsal invasion into North America. We address the questions: what have we learned; what are current challenges; and are we ready for a more effective reaction to Bsal’s eventual detection? We expect that the many contributions to preemptive planning accrued over the past decade will pay dividends in amphibian conservation effectiveness and can inform future responses to other novel wildlife diseases and extreme threats.

North America↗

Flood-inundation maps for the West Branch Susquehanna River near the Boroughs of Lewisburg and Milton, Pennsylvania

Digital flood-inundation maps for an approximate 8-mile reach of the West Branch Susquehanna River from approximately 2 miles downstream from the Borough of Lewisburg, extending upstream to approximately 1 mile upstream from the Borough of Milton, Pennsylvania, were created by the U.S. Geological Survey (USGS) in cooperation with the Susquehanna River Basin Commission (SRBC). The inundation maps, which can be accessed through the USGS Flood Inundation Mapping Science Web site at http://water.usgs.gov/osw/flood_inundation/ , depict the estimated areal extent and depth of flooding corresponding to selected water levels (stages) at the USGS streamgage 01553500, West Branch Susquehanna River at Lewisburg, Pa. In addition, the information has been provided to the Susquehanna River Basin Commission (SRBC) for incorporation into their Susquehanna Inundation Map Viewer (SIMV) flood warning system ( http://maps.srbc.net/simv/ ). The National Weather Service (NWS) forecasted peak-stage information ( http://water.weather.gov/ahps ) for USGS streamgage 01553500, West Branch Susquehanna River at Lewisburg, Pa., may be used in conjunction with the maps developed in this study to show predicted areas of flood inundation. In this study, flood profiles were computed for the stream reach by means of a one-dimensional step-backwater model. Calibration of the model was achieved using the most current stage-discharge relations (rating number 11.1) at USGS streamgage 01553500, West Branch Susquehanna River at Lewisburg, Pa., a documented water-surface profile from the December 2, 2010, flood, and recorded peak stage data. The hydraulic model was then used to determine 26 water-surface profiles for flood stages at 1-foot intervals referenced to the streamgage datum ranging from 14 feet (ft) to 39 ft. Modeled flood stages, as defined by NWS, include Action Stage, 14 ft; Flood Stage, 18 ft; Moderate Flood Stage, 23 ft; and Major Flood Stage, 28 ft. Geographic information system (GIS) technology was then used to combine the simulated water-surface profiles with a digital elevation model (DEM) derived from light detection and ranging (lidar) data to delineate the area flooded at each water level. The availability of these maps, along with World Wide Web information regarding current stage from USGS streamgages and forecasted stream stages from the NWS, provide emergency management personnel and residents with information that is critical for flood response activities, such as evacuations and road closures, as well as for post-flood recovery efforts.

Pennsylvania↗

Development of a hydraulic model and flood-inundation maps for the Wabash River near the Interstate 64 Bridge near Grayville, Illinois

A two-dimensional hydraulic model and digital flood‑inundation maps were developed for a 30-mile reach of the Wabash River near the Interstate 64 Bridge near Grayville, Illinois. The flood-inundation maps, which can be accessed through the U.S. Geological Survey (USGS) Flood Inundation Mapping Science web site at http://water.usgs.gov/osw/flood_inundation/ , depict estimates of the areal extent and depth of flooding corresponding to selected water levels (stages) at the USGS streamgage on the Wabash River at Mount Carmel, Ill (USGS station number 03377500). Near-real-time stages at this streamgage may be obtained on the internet from the USGS National Water Information System at http://waterdata.usgs.gov/ or the National Weather Service (NWS) Advanced Hydrologic Prediction Service (AHPS) at http://water.weather.gov/ahps/ , which also forecasts flood hydrographs at this site (NWS AHPS site MCRI2). The NWS AHPS forecasts peak stage information that may be used with the maps developed in this study to show predicted areas of flood inundation. Flood elevations were computed for the Wabash River reach by means of a two-dimensional, finite-volume numerical modeling application for river hydraulics. The hydraulic model was calibrated by using global positioning system measurements of water-surface elevation and the current stage-discharge relation at both USGS streamgage 03377500, Wabash River at Mount Carmel, Ill., and USGS streamgage 03378500, Wabash River at New Harmony, Indiana. The calibrated hydraulic model was then used to compute 27 water-surface elevations for flood stages at 1-foot (ft) intervals referenced to the streamgage datum and ranging from less than the action stage (9 ft) to the highest stage (35 ft) of the current stage-discharge rating curve. The simulated water‑surface elevations were then combined with a geographic information system digital elevation model, derived from light detection and ranging data, to delineate the area flooded at each water level. The availability of these maps, along with information on the internet regarding current stage from the USGS streamgage at Mount Carmel, Ill., and forecasted stream stages from the NWS AHPS, provides emergency management personnel and residents with information that is critical for flood-response activities such as evacuations and road closures, as well as for postflood recovery efforts.

Illinois↗