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USGS2013

Estimating groundwater recharge

Understanding groundwater recharge is essential for successful management of water resources and modeling fluid and contaminant transport within the subsurface. This book provides a critical evaluation of the theory and assumptions that underlie methods for estimating rates of groundwater recharge. Detailed explanations of the methods are provided - allowing readers to apply many of the techniques themselves without needing to consult additional references. Numerous practical examples highlight benefits and limitations of each method. Approximately 900 references allow advanced practitioners to pursue additional information on any method. For the first time, theoretical and practical considerations for selecting and applying methods for estimating groundwater recharge are covered in a single volume with uniform presentation. Hydrogeologists, water-resource specialists, civil and agricultural engineers, earth and environmental scientists and agronomists will benefit from this informative and practical book. It can serve as the primary text for a graduate-level course on groundwater recharge or as an adjunct text for courses on groundwater hydrology or hydrogeology.

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USGS2022

Bayesian applications in environmental and ecological studies with R and Stan

Modern ecological and environmental sciences are dominated by observational data. As a result, traditional statistical training often leaves scientists ill-prepared for the data analysis tasks they encounter in their work. Bayesian methods provide a more robust and flexible tool for data analysis, as they enable information from different sources to be brought into the modelling process. Bayesian Applications in Evnironmental and Ecological Studies with R and Stan provides a Bayesian framework for model formulation, parameter estimation, and model evaluation in the context of analyzing environmental and ecological data. Features: An accessible overview of Bayesian methods in environmental and ecological studies Emphasizes the hypothetical deductive process, particularly model formulation Necessary background material on Bayesian inference and Monte Carlo simulation Detailed case studies, covering water quality monitoring and assessment, ecosystem response to urbanization, fisheries ecology, and more Advanced chapter on Bayesian applications, including Bayesian networks and a change point model Complete code for all examples, along with the data used in the book, are available via GitHub The book is primarily aimed at graduate students and researchers in the environmental and ecological sciences, as well as environmental management professionals. This is a group of people representing diverse subject matter fields, who could benefit from the potential power and flexibility of Bayesian methods.

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USGS2009

Setting the stage for a sustainable Pacific salmon fisheries strategy

Salmon and steelhead Oncorhynchus spp., have been keystone species for ecosystems and human cultures of the North American Pacific coast for cons. Yet, in the past century, many populations have been greatly diminished and some are now extinct-the result of a combination of factors, including habitat loss and degradation, overfishing, natural variability in salmon production, negative effects of artificial propagation, and weaknesses in institutional and regulatory structures. We argue that a major shift is required, from the egocentric environmental approach (wherein each part of the ecosystem is managed as a unit) to the ecocentric ecosystem approach (wherein all parts are integrated for management). A management framework is proposed that contains-for each management unit such as a watershed-four elements: management goals; management objectives, ecosystem indicators; and a coordinated action plan. We also describe the Sustainable Fisheries Strategy, a consultative process for developing an ecosystem-based approach toward achieving sustainable Pacific salmon and steelhead populations and fisheries. This book is one of three important underpinnings of the Strategy; the other two are the Strategy itself and a manual being developed to guide community-based programs embracing the principles of sustainable fisheries. This book contains important historical perspectives as well as numerous innovative ideas for moving toward ecosystem-oriented, sustainable management of Pacific salmon and steelhead.

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USGS2009

Length frequency, condition, growth, and catch per effort indices for common North American fishes

One of the greatest advantages to using standard sampling is the ability of compare sample data to those data collected from an array of other populations over a wide geographic area using similar techniques. A biologist can then ascertain if the sampling data are within an expected range or are higher or lower than expected when compared to other populations.. When biologists collect data using different biased, unvalidated methods, it is often impossible to compare data among populations and evaluate the results. Standard sampling allows comparisons of data among sampling periods and locations. Until now, summaries of freshwater fisheries data collected in a standard manner across North America have not been available. Length at age, length-weight relationships, and other types of detailed summary data are available in Carlander (1696-1977). However, a variety of sampling methods were used to collect these data, allowing successful comparisons among length at age and length-weight data but making it difficult or impossible to compare size distribution and catch per unit effort (CPUE) data among populations. This chapter provides North American and ecoregion (area that contains a geographically distinct assemblage of natural communities and share similar environmental conditions) averages and distributions of several commonly used sampling techniques described in this book. Biologists using the standardized sampling techniques described in this book will be able to compare their data sets to the summaries provided in the tables that follow to determine if the data from their sampled populations of fish are average, below average, or above average for a given index in their ecoregion or across North America.

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USGS2009

Coldwater fish in small standing waters

This chapter describes standard techniques for sampling coldwater fishes in small standing waters. Within the context of this book, coldwater fish species are those that prefer water temperatures less than 15°C, and small standing waters are lakes and reservoirs where surface area is less than 200 ha. Chapter 7 of this book describes sampling coldwater fishes in large standing waters (i.e., surface area > 200 ha). The criterion that separates small and large waters is arbitrary and does not imply that different methods are required depending on, for example, whether a lake is 199 or 201 ha. Two chapters are dedicated to sampling coldwater fishes in standing waters because lake size varies by several orders of magnitude and some differences in sampling methods are needed to achieve efficient sampling at both ends of the lake-size continuum. Although it is clear that some differences in methods are necessary to accommodate extremes in lake sizes, it is not clear when the transition from methods for small lakes to methods for large lakes should apply. To bridge this gap, we describe methods of sampling coldwater fish in small lakes and reservoirs that are compatible with a subset of the methods proposed for coldwater fish in large lakes and reservoirs (see Chapter 7). The method proposed for sampling coldwater fish in small standing waters is depth-stratified summer gill netting. We acknowledge that coldwater species often inhabit the same lakes and reservoirs as warmwater fish. Thermal stratification during summer influences the depth distribution of coldwater and warmwater species, and a depth-stratified survey can sample both temperature guilds. For this reason, gill-netting methods for sampling coldwater fishes have been chosen so that they are compatible with gill-netting methods proposed for sampling warmwater fishes (i.e., Chapters 2 and 3).

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USGS2025

Freshwater and diadromous Fishes of Puerto Rico

Freshwater and Diadromous Fishes of Puerto Rico describes the diversity of fishes in Puerto Rico’s freshwater environments and provides information on the history of research, management and conservation, and culture of fish and fisheries in Puerto Rico. This book’s catalog of fishes guides the reader in the identification of more than 50 native and nonnative species of fish from 22 families that occur in Puerto Rico’s freshwater lagoons, rivers, streams, and reservoirs. Each species account includes a map of known occurrences, and a description of each species’ morphological characteristics, biology, and distribution. Freshwater and Diadromous Fishes of Puerto Rico is the result of decades of scientific research; however, it is intended to be accessible and useful to readers with a variety of backgrounds, including scientists, students, and outdoor enthusiasts such as recreational anglers and freshwater snorkelers. Conservation and management are underlying themes of Freshwater and Diadromous Fishes of Puerto Rico . Though the main goal of this book is to be a resource for the identification of Puerto Rico’s freshwater fishes, and on their biology and ecology, it is also intended to increase awareness of threats to these fishes and their value to people and ecosystems.

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USGS1996

Measuring and monitoring biological diversity: Standard methods for mammals

Measuring and Monitoring Biological Diversity: Standard Methods for Mammals provides a comprehensive manual for designing and implementing inventories of mammalian biodiversity anywhere in the world and for any group, from rodents to open-country grazers. The book emphasizes formal estimation approaches, which supply data that can be compared across habitats and over time. Beginning with brief natural histories of the twenty-six orders of living mammals, the book details the field techniques—observation, capture, and sign interpretation—appropriate to different species. The contributors provide guidelines for study design, discuss survey planning, describe statistical techniques, and outline methods of translating field data into electronic formats. Extensive appendixes address such issues as the ethical treatment of animals in research, human health concerns, preserving voucher specimens, and assessing age, sex, and reproductive condition in mammals. Useful in both developed and developing countries, this volume and the Biological Diversity Handbook Series as a whole establish essential standards for a key aspect of conservation biology and resource management.

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USGS2001

Dispersal

The ability of species to migrate and disperse is a trait that has interested ecologists for many years. Now that so many species and ecosystems face major environmental threats from habitat fragmentation and global climate change, the ability of species to adapt to these changes by dispersing, migrating, or moving between patches of habitat can be crucial to ensuring their survival. This book provides a timely and wide-ranging overview of the study of dispersal and incorporates much of the latest research. The causes, mechanisms, and consequences of dispersal at the individual, population, species and community levels are considered. The potential of new techniques and models for studying dispersal, drawn from molecular biology and demography, is also explored. Perspectives and insights are offered from the fields of evolution, conservation biology and genetics. Throughout the book, theoretical approaches are combined with empirical data, and care has been taken to include examples from as wide a range of species as possible.

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USGS2002

Analysis and Management of Animal Populations: Modeling, Estimation and Decision Making

This book deals with the processes involved in making informed decisions about the management of animal populations. It covers the modeling of population responses to management actions, the estimation of quantities needed in the modeling effort, and the application of these estimates and models to the development of sound management decisions. The book synthesizes and integrates in a single volume the methods associated with these themes, as they apply to ecological assessment and conservation of animal populations. KEY FEATURES * Integrates population modeling, parameter estimation and * decision-theoretic approaches to management in a single, cohesive framework * Provides authoritative, state-of-the-art descriptions of quantitative * approaches to modeling, estimation and decision-making * Emphasizes the role of mathematical modeling in the conduct of science * and management * Utilizes a unifying biological context, consistent mathematical notation, * and numerous biological examples

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USGS2004

Species Conservation and Management: Case Studies

This edited volume is a collection of population and metapopulation models for a wide variety of species, including plants, invertebrates, fishes, amphibians, reptiles, birds, and mammals. Each chapter of the book describes the application of RAMAS GIS 4.0 to one species, with the aim of demonstrating how various life history characteristics of the species are incorporated into the model, and how the results of the model has been or can be used in conservation and management of the species. The book comes with a CD that includes a demo version of the program, and the data files for each species.

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USGS2005

14. The Herons (Ardeidae)

Herons and their close relatives, the egrets and bitterns, comprise sixty species in total and are found all over the world except in polar regions, and are a strikingly beautiful part of the wetlands they inhabit. They are particularly abundant and popular in South West USA, especially Florida. Herons are a diverse group, easily recognized by their long legs, necks and bills. Many species are notable for their sociality as they feed, roost, and nest together in single or mixed species assemblages. The authors have extensive experience of research and observation of these birds and this book provides an up to date comprehensive review of the herons of the world. Covering their biology, distribution, description, systematics, breeding, feeding, and conservation, James Hancock and James Kushlan have distilled their lifetimes' research on the heron into one volume. This volume is complemented by beautiful color paintings especially painted for the book, color photographs, and distribution maps.

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USGS2007

Mammals of South America, Volume 1, Marsupials, Xenarthrans, Shrews, and Bats

The vast terrain between Panama and Tierra del Fuego contains some of the world?s richest mammalian fauna, but until now it has lacked a comprehensive systematic reference to the identification, distribution, and taxonomy of its mammals. The first such book of its kind and the inaugural volume in a three-part series, Mammals of South America both summarizes existing information and encourages further research of the mammals indigenous to the region. Containing identification keys and brief descriptions of each order, family, and genus, the first volume of Mammals of South America covers marsupials, shrews, armadillos, sloths, anteaters, and bats. Species accounts include taxonomic descriptions, synonymies, keys to identification, distributions with maps and a gazetteer of marginal localities, lists of recognized subspecies, brief summaries of natural history information, and discussions of issues related to taxonomic interpretations. Highly anticipated and much needed, this book will be a landmark contribution to mammalogy, zoology, tropical biology, and conservation biology.

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USGS2009

Coastal wetlands: an integrated ecosystem approach

Coastal wetlands are under a great deal of pressure from the dual forces of rising sea level and the intervention of human populations both along the estuary and in the river catchment. Direct impacts include the destruction or degradation of wetlands from land reclamation and infrastructures. Indirect impacts derive from the discharge of pollutants, changes in river flows and sediment supplies, land clearing, and dam operations. As sea level rises, coastal wetlands in most areas of the world migrate landward to occupy former uplands. The competition of these lands from human development is intensifying, making the landward migration impossible in many cases. This book provides an understanding of the functioning of coastal ecosystems and the ecological services that they provide, and suggestions for their management. In this book a CD is included containing color figures of wetlands and estuaries in different parts of the world.

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USGS2008

Rocks above the clouds: A hiker's and climber's guide to Colorado mountain geology

A Colorado mountain geology book written specifically for climbers, scramblers and hikers. A geologic primer for mountain people with range-by-range geological descriptions of Colorado mountains and detailed geologic information on the Fourteeners. Rocks Above the Clouds is the first geology book written for climbers, scramblers and hikers. It is an exploration of how the nature of mountains and the challenges they present to the climber and hiker are influenced by the rocks that form them, in other words, by their geology. After describing the types of rocks found in mountains, the authors of Rocks Above the Clouds cover the geologic process from the big bang through the processes that continue to shape the mountains today. This mountain geology primer is a range-by-range description of what to expect in the Colorado mountains followed by some very curious information on the Colorado 14ers. Whether you travel in the mountains as a casual hiker, peak bagging scrambler, or technical climber, knowledge of mountain geology can help in planning your route, selecting your campsite and evaluating the hazards you face. Knowing something about different rock types might enable you to pick a route that avoids loose rock. Knowing that when wet, a particular rock surface will feel like oil might encourage you to forgo that siesta on the summit and head down before the afternoon thunderstorm.

Colorado↗
USGS2003

Structural Equation Modeling: Applications in ecological and evolutionary biology

This book presents an introduction to the methodology of structural equation modeling, illustrates its use, and goes on to argue that it has revolutionary implications for the study of natural systems. A major theme of this book is that we have, up to this point, attempted to study systems primarily using methods (such as the univariate model) that were designed only for considering individual processes. Understanding systems requires the capacity to examine simultaneous influences and responses. Structural equation modeling (SEM) has such capabilities. It also possesses many other traits that add strength to its utility as a means of making scientific progress. In light of the capabilities of SEM, it can be argued that much of ecological theory is currently locked in an immature state that impairs its relevance. It is further argued that the principles of SEM are capable of leading to the development and evaluation of multivariate theories of the sort vitally needed for the conservation of natural systems. Supplementary information can be found at the authors website, http://www.jamesbgrace.com/ . • Details why multivariate analyses should be used to study ecological systems • Exposes unappreciated weakness in many current popular analyses • Emphasizes the future methodological developments needed to advance our understanding of ecological systems.

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USGS2012

Radio telemetry equipment and applications for carnivores

Radio-telemetry was not included in the first comprehensive manual of wildlife research techniques (Mosby 1960) because the first published papers were about physiological wildlife telemetry (LeMunyan et al. 1959) and because research using telemetry in field ecology was just being initiated (Marshall et al. 1962; Cochran and Lord 1963). Among the first uses of telemetry to study wildlife, however, was a study of carnivores (Craighead et al. 1963), and telemetry has become a common method for studying numerous topics of carnivore biology. Our goals for this chapter are to provide basic information about radio-telemetry equipment and procedures. Although we provide many references to studies using telemetry equipment and methods, we recommend Kenward's (2001) comprehensive book, A manual of wildlife radio tagging for persons who are unfamiliar with radio-telemetry, Fuller et al. (2005), and Tomkiewicz et al. (2010). Compendia of uses of radio-telemetry in animal research appear regularly as chapters in manuals (Cochran 1980; Samuel and Fuller 1994), in books about equipment, field procedures, study design, and applications (Amlaner and Macdonald 1980; Anderka 1987; Amlaner 1989; White and Garrott 1990; Priede and Swift 1992; Kenward 2001; Millspaugh and Marzluff 2001; Mech and Barber 2002), and in reviews highlighting new developments (Cooke et al. 2004; Rutz and Hays 2009; Cagnacci et al. 2010). Some animal telemetry products and techniques have remained almost unchanged for years, but new technologies and approaches emerge and replace previously available equipment at an increasing pace. Here, we emphasize recent studies for which telemetry was used with carnivores.

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USGS1997

Pesticides in surface waters: distribution, trends, and governing factors

Pesticde use in agriculture and non-agriculture settings has increased dramatically over the last several decades. Concern about adverse effects on the environment and human health has spurred an enormous amount of research into their environmental behavior and fate. Pesticides in Surface Waters presents a comprehensive summary of this research. This book evaluates published studies that focus on measuring pesticide concentration. The studies chosen include peer reviewed scientific literature, government reports, laboratory studies, and those using microcosms and artificial streams and ponds. The authors used this information to develop their overview of pesticide contamination of surface waters. The exhaustive compilation of data along with the fundamental science make this book essential for those involved in pesticide use, environmental protection, water quality, and human or ecological risk assessment. Pesticides in Surface Waters covers the results of actual studies, sources of pesticides to surface water, fate and transport, and environmental significance. Hundreds of data-packed tables, maps, charts, and drawings illustrate the key points, making research and application easy and cost effective.

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USGS1999

Pesticides in stream sediment and aquatic biota: distribution, trends, and governing factors

More than 20 years after the ban of DDT and other organochlorine pesticides, pesticides continue to be detected in air, rain, soil, surface water, bed sediment, and aquatic and terrestrial biota throughout the world. Recent research suggests that low levels of some of these pesticides may have the potential to affect the development, reproduction, and behavior of fish and wildlife, and possibly humans. Pesticides in Stream Sediment and Aquatic Biota: Distribution, Trends, and Governing Factors assesses the occurrence and behavior of pesticides in bed sediment and aquatic biota-the two major compartments of the hydrologic system where organochlorine pesticides are most likely to accumulate. This book collects, for the first time, results from several hundred monitoring studies and field experiments, ranging in scope from individual sites to the entire nation. Comprehensive tables provide concise summaries of study locations, pesticides analyzed, and study outcomes. Comprehensive and extensively illustrated, Pesticides in Stream Sediment and Aquatic Biota: Distribution, Trends, and Governing Factors evaluates the sources, environmental fate, geographic distribution, and long-term trends of pesticides in bed sediment and aquatic biota. The book focuses on organochlorine pesticides, but also assesses the potential for currently used pesticides to be found in bed sediment and aquatic biota. Topics covered in depth include the effect of land use on pesticide occurrence, mechanisms of pesticide uptake and accumulation by aquatic biota, and the environmental significance of observed levels of pesticides in stream sediment and aquatic biota.

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