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At least 649 records · Page 36Linked to original sources

The challenges of implementing pathogen control strategies for fishes used in biomedical research

Over the past several decades, a number of fish species, including the zebrafish, medaka, and platyfish/swordtail, have become important models for human health and disease. Despite the increasing prevalence of these and other fish species in research, methods for health maintenance and the management of diseases in laboratory populations of these animals are underdeveloped. There is a growing realization that this trend must change, especially as the use of these species expands beyond developmental biology and more towards experimental applications where the presence of underlying disease may affect the physiology animals used in experiments and potentially compromise research results. Therefore, there is a critical need to develop, improve, and implement strategies for managing health and disease in aquatic research facilities. The purpose of this review is to report the proceedings of a workshop entitled “Animal Health and Disease Management in Research Animals” that was recently held at the 5th Aquatic Animal Models for Human Disease in September 2010 at Corvallis, Oregon to discuss the challenges involved with moving the field forward on this front.

Comparative Biochemistry and Physiology, Part C: T↗

Preliminary study of gill NA+,K+-ATPase activity in juvenile spring chinook salmon following electroshock or handling stress

We compared gill Na+,K+-ATPase in subyearling and yearling spring chinook salmon Oncorhynchus tshawytscha 3 h, 24 h, and 7 d after exposure to either a short pulsed DC electroshock (300 V, 50 Hz, 8-ms pulse duration) or an acute handling stress. Mean gill Na+,K+-ATPase values ranged from 7.5 to 11.8 ??mol inorganic phosphate (Pi) ?? (mg protein)-1 ?? h-1. No significant differences were detected, with the exception of electroshocked subyearlings 7 d after treatment. Increased activity was attributed to the presence of two influential values. No significant differences were detected after removal of these observations, so the increase was not considered biologically significant. Inclusion of the outliers did not alter our interpretation of the results given that the observed increase was slight compared with the magnitude of changes reported under experimental conditions and in migrating juvenile salmonids. The treatment groups underwent a typical stress response and had significantly elevated cortisol and glucose levels 3 h after treatment. Recovery to control levels occurred within 24 h for cortisol and from 24 h to 7 d for glucose. Our results lead to the conclusion that neither acute electroshock nor acute handling stress alters Na+,K+-ATPase activity in juvenile spring chinook salmon.

North American Journal of Fisheries Management↗

California State Waters Map Series — Drakes Bay and vicinity, California

In 2007, the California Ocean Protection Council initiated the California Seafloor Mapping Program (CSMP), designed to create a comprehensive seafloor map of high-resolution bathymetry, marine benthic habitats, and geology within the 3-nautical-mile limit of California’s State Waters. The CSMP approach is to create highly detailed seafloor maps through collection, integration, interpretation, and visualization of swath sonar data, acoustic backscatter, seafloor video, seafloor photography, high-resolution seismic-reflection profiles, and bottom-sediment sampling data. The map products display seafloor morphology and character, identify potential marine benthic habitats, and illustrate both the surficial seafloor geology and shallow (to about 100 m) subsurface geology. The Drakes Bay and Vicinity map area is located in northern California, about 30 km north of San Francisco and about 65 km south of Fort Ross. The map area is in the northern part of the Gulf of the Farallones National Marine Sanctuary, and it includes all or parts of four California Marine Protected Areas. The largely undeveloped onshore part of the map area, which occupies much of the southern and southeastern parts of the Point Reyes peninsula, is used primarily for grazing, as well as recreation, as it is home to the Point Reyes National Seashore. The triangular Point Reyes peninsula, which lies completely west of the San Andreas Fault Zone, is bounded by the steep terrain of Inverness Ridge along its northeastern margin, Tomales Point at its northernmost tip, Point Reyes at its southwesternmost point, and Bolinas at its southern end. The landscape in between includes (from southeast to northwest) the sandy beaches along Drakes Bay, the estuaries of Drakes Estero and Estero de Limantour, and the long, windswept Point Reyes Beach, which is backed by an extensive dune field. The seafloor in the map area generally extends from the shoreline to water depths of about 40 to 50 m, except for the area south of the Point Reyes headland where water depths reach 60 to 70 m. This bathymetric gradient south and west of the Point Reyes headland is related to north-side-up motion along the Point Reyes Fault Zone. Except for the bathymetric gradient across the Point Reyes Fault Zone, the bedrock platform in the nearshore and inner shelf areas (50 to 60 m depth) is relatively flat (less than 1.0°) and is overlain by sand-sized to coarser grained sediment. Finer grained sediments are found in water depths greater than 60 m south of the Point Reyes headland, but they also extend into shallower (less than 40 m) water within Drakes Bay. Surficial and shallow sediments were deposited in the last about 21,000 years during the approximately 125-m sea-level rise that followed the last major lowstand associated with the Last Glacial Maximum, at which time the entire Drakes Bay and Vicinity map area was emergent and the shoreline was about 30 km south and west of the present-day shoreline. Tectonic influences that impact the shelf morphology and geology in the map area are related to local faulting, folding, uplift, and subsidence. Offshore of the Point Reyes headland, granitic basement rocks are offset vertically about 1.4 km along the Point Reyes Fault Zone; this uplift, combined with west-side-up offset on the San Andreas Fault Zone, has resulted in uplift of the Point Reyes peninsula and the adjacent shelf. Late Pleistocene uplift of marine terraces on the southern Point Reyes peninsula suggests active deformation of offshore structures west of the San Andreas Fault Zone. Pervasive stratal thinning within inferred uppermost Pliocene and Pleistocene deposits above the west strand of the Point Reyes Fault Zone suggests Quaternary active shortening of the curvilinear, northeast- to north-dipping Point Reyes Fault Zone. Lack of clear deformation in the uppermost Pleistocene and Holocene deposits suggests that activity along the Point Reyes Fault Zone has ceased or slowed since about 21,000 years ago. Seafloor habitats in the Drakes Bay and Vicinity map area range from unconsolidated continental-shelf sediment to hard substrate. Rocky-shelf outcrops and rubble are considered to be promising potential habitats for rockfish and lingcod, both of which are recreationally and commercially important species. Circulation over the continental shelf in the map area is dominated by the southward-flowing California Current, the eastern limb of the North Pacific Gyre. Associated upwelling brings cool, nutrient-rich waters to the surface, resulting in high biological productivity. The current flow generally is southeastward during the spring and summer; however, during the fall and winter, the otherwise persistent northwest winds are sometimes weak or absent, causing the California Current to move farther offshore and the Davidson Current, a weaker, northward-flowing countercurrent, to become active. Sediment transport in the map area largely is controlled by surface waves and tidal currents in the nearshore and, at depths greater than 20 to 30 m, by tidal and subtidal currents. In the map area, nearshore littoral drift of sand and coarse sediment is to the south, owing to the dominant west-northwest swell direction, and scour from large waves and tidal currents removes and redistributes sediment over large areas of the inner shelf. Tidal currents are particularly strong over the shelf in the map area, and they dominate the current regime in the nearshore. Further offshore, bottom currents generally flow to the northwest, distributing finer grained sediment accordingly.

California↗

Evaluating simplistic methods to understand current distributions and forecast distribution changes under climate change scenarios: An example with coypu ( Myocastor coypus )

Invasive species provide a unique opportunity to evaluate factors controlling biogeographic distributions; we can consider introduction success as an experiment testing suitability of environmental conditions. Predicting potential distributions of spreading species is not easy, and forecasting potential distributions with changing climate is even more difficult. Using the globally invasive coypu ( Myocastor coypus [Molina, 1782]), we evaluate and compare the utility of a simplistic ecophysiological based model and a correlative model to predict current and future distribution. The ecophysiological model was based on winter temperature relationships with nutria survival. We developed correlative statistical models using the Software for Assisted Habitat Modeling and biologically relevant climate data with a global extent. We applied the ecophysiological based model to several global circulation model ( GCM ) predictions for mid-century. We used global coypu introduction data to evaluate these models and to explore a hypothesized physiological limitation, finding general agreement with known coypu distribution locally and globally and support for an upper thermal tolerance threshold. Global circulation model based model results showed variability in coypu predicted distribution among GCMs , but had general agreement of increasing suitable area in the USA. Our methods highlighted the dynamic nature of the edges of the coypu distribution due to climate non-equilibrium, and uncertainty associated with forecasting future distributions. Areas deemed suitable habitat, especially those on the edge of the current known range, could be used for early detection of the spread of coypu populations for management purposes. Combining approaches can be beneficial to predicting potential distributions of invasive species now and in the future and in exploring hypotheses of factors controlling distributions.

NeoBiota↗

Assessment of canyon wall failure process from multibeam bathymetry and Remotely Operated Vehicle (ROV) observations, U.S. Atlantic continental margin

Over the last few years, canyons along the northern U.S. Atlantic continental margin have been the focus of intensive research examining canyon evolution, submarine geohazards, benthic ecology and deep-sea coral habitat. New high-resolution multibeam bathymetry and Remotely Operated Vehicle (ROV) dives in the major shelf-breaching and minor slope canyons, provided the opportunity to investigate the size of, and processes responsible for, canyon wall failures. The canyons cut through thick Late Cretaceous to Recent mixed siliciclastic and carbonate-rich lithologies which impart a primary control on the style of failures observed. Broad-scale canyon morphology across much of the margin can be correlated to the exposed lithology. Near vertical walls, sedimented benches, talus slopes, and canyon floor debris aprons were present in most canyons. The extent of these features depends on canyon wall cohesion and level of internal fracturing, and resistance to biological and chemical erosion. Evidence of brittle failure over different spatial and temporal scales, physical abrasion by downslope moving flows, and bioerosion, in the form of burrows and surficial scrape marks provide insight into the modification processes active in these canyons. The presence of sessile fauna, including long-lived, slow growing corals and sponges, on canyon walls, especially those affected by failure provide a critical, but as yet, poorly understood chronological record of geologic processes within these systems.

Book chapter↗

The influence of snow cover, air temperature, and groundwater flow on the active-layer thermal regime of Arctic hillslopes drained by water tracks

Permafrost in Arctic watersheds limits soil biological activity to a thin, seasonally thawed active layer that contributes water to streams. In many hillslopes, relatively wet drainage features called water tracks have distinct freeze-thaw patterns that affect groundwater flow and storage, and thus the export of heat and solutes to Arctic streams. This study uses groundwater flow and energy transport models to examine potential controls on the timing and duration of freeze–thaw conditions and the magnitude of temperature fluctuations within water tracks and their adjacent hillslopes. The simulated length of the active-layer thaw season varies by 1 month over the range of snow-cover and mean annual air-temperature scenarios simulated. The timing and duration of freezing is particularly sensitive to depth and duration of snow cover. Thus, the deeper snowpack covers that can accumulate in water tracks contribute to their more persistent thaw conditions and their ability to conduct groundwater downslope. A three-dimensional simulation shows that during the summer thaw season, the water track captures groundwater laterally from half way across the hillslope. The models presented here elucidate key mechanisms driving small-scale variation in the active-layer thermal regime of tundra hillslopes, which may be responsible for changes in drainage-network geometry and Arctic biogeochemical fluxes under a warming climate.

Alaska↗

A multi-scaled approach to evaluating the fish assemblage structure within southern Appalachian streams USA.

There is considerable uncertainty about the relative roles of stream habitat and landscape characteristics in structuring stream-fish assemblages. We evaluated the relative importance of environmental characteristics on fish occupancy at the local and landscape scales within the upper Little Tennessee River basin of Georgia and North Carolina. Fishes were sampled using a quadrat sample design at 525 channel units within 48 study reaches during two consecutive years. We evaluated species–habitat relationships (local and landscape factors) by developing hierarchical, multispecies occupancy models. Modeling results suggested that fish occupancy within the Little Tennessee River basin was primarily influenced by stream topology and topography, urban land coverage, and channel unit types. Landscape scale factors (e.g., urban land coverage and elevation) largely controlled the fish assemblage structure at a stream-reach level, and local-scale factors (i.e., channel unit types) influenced fish distribution within stream reaches. Our study demonstrates the utility of a multi-scaled approach and the need to account for hierarchy and the interscale interactions of factors influencing assemblage structure prior to monitoring fish assemblages, developing biological management plans, or allocating management resources throughout a stream system.

Georgia, North Carolina, Tennessee↗

The consequences of climate change for dryland biogeochemistry

Drylands, which cover more than 40% of Earth’s terrestrial surface, are dominant drivers of global biogeochemical cycling and home to more than one third of the human population. Climate projections predict warming, drought frequency and severity, and evaporative demand will increase in drylands at faster rates than global means. Due to extreme temperatures and high biological dependency on limited water availability, drylands are predicted to be exceptionally sensitive to climate change and, indeed, significant climate impacts are already being observed. Yet our understanding and ability to forecast climate change effects on dryland biogeochemistry and ecosystem functions lag behind many mesic systems. To improve our capacity to forecast ecosystem change, we propose focusing on the controls and consequences of two key characteristics affecting dryland biogeochemistry: i) high spatial and temporal heterogeneity in environmental conditions and ii) generalized resource scarcity. In addition to climate change, drylands are experiencing accelerating land use change. Building our understanding of dryland biogeochemistry in both intact and disturbed systems will better equip us to address the interacting effects of climate change and landscape degradation. Responding to these challenges will require a diverse, globally distributed, and interdisciplinary community of dryland experts united towards better understanding these vast and important ecosystems.

New Phytologist Foundation↗

Parking lot sealcoat: a major source of polycyclic aromatic hydrocarbons (PAHs) in urban and suburban environments

Collaborative studies by the City of Austin and the U. S. Geological Survey (USGS) have identified coal-tar based sealcoat—the black, shiny emulsion painted or sprayed on asphalt pavement such as parking lots—as a major and previously unrecognized source of polycyclic aromatic hydrocarbon (PAH) contamination. Several PAHs are suspected human carcinogens and are toxic to aquatic life. Studies in Austin, Texas, showed that particles in runoff from coal-tar based sealcoated parking lots had concentrations of PAHs that were about 65 times higher than concentrations in particles washed off parking lots that had not been sealcoated. Biological studies, conducted by the City of Austin in the field and in the laboratory, indicated that PAH levels in sediment contaminated with abraded sealcoat were toxic to aquatic life and were degrading aquatic communities, as indicated by loss of species and decreased numbers of organisms. Identification of this source of PAHs may help to improve future strategies for controlling these compounds in urban water bodies across the Nation where parking lot sealcoat is used.

Fact Sheet↗

Geographic and oceanographic influences on ferromanganese crust composition along a Pacific Ocean meridional transect, 14N to 14S

The major controls on the variability of ferromanganese (FeMn) crust composition have been generally described over the past 40 years; however, most compilation studies lack quantitative statistics and are limited to a small region of several seamounts or compare FeMn crusts from disparate areas of the global oceans. This study provides the first detailed research to address the geographic and oceanographic controls of FeMn crust composition from a line of seamounts across 30° of latitude in the west central Pacific. Element concentrations from the uppermost layer (<15 mm) of 57 FeMn crusts were evaluated for statistically significant variance and correlation with a variety of oceanographic and geographic parameters. Manganese, Co, Ni, Mo, and Zn concentrations in crusts in this region are highly anticorrelated with seawater oxygen concentrations, suggesting oxygen as the dominant controlling factor for these elements. Iron instead correlates with water depth, which we attribute to increased carbonate ion concentration with increasing water depth. Silicon and Al content in crusts demonstrate a potential meridional variance of detrital inputs and sources in the region. Iron, Ba, and Mg are enriched in FeMn crusts below the equatorial upwelling zone which is related to biological productivity. Fluctuations in the four oceanographic and geographic parameters, seawater oxygen content, detrital input, surface productivity, and deep sources of iron, are robustly recorded by FeMn crusts. Modern measurements of these primary parameters, as well as paleoceanographic reconstructions, can be used to define regions of interest for FeMn crust exploration.

Geochemistry, Geophysics, Geosystems↗

Effect of passive integrated transponder tag size on survival, tag loss, and growth of Santa Ana Sucker

Objective The Santa Ana Sucker Pantosteus santaanae is endemic to southern California and is listed as threatened under the U.S. Endangered Species Act. Seasonal limitations on conventional sampling and inconsistencies in survey methodologies have led to an incomplete understanding of population dynamics. Alternative sampling methods have the potential to fill important knowledge gaps in biology and life history. One option is to use passive integrated transponder (PIT) tags to identify individuals and track their movements. The objective of this study was to test the effect of PIT tag size on survival, tag loss, and growth of Santa Ana Suckers. Methods Sixty-one Santa Ana Suckers were randomly assigned to one of three treatments (control: N = 20; 8-mm PIT tag: N = 21; or 12-mm PIT tag: N = 20). A full-duplex PIT tag was injected into each fish, and lengths (standard, fork, and total length) and weight were recorded. Fish remained in raceways for 36 d, after which they were retrieved, scanned, and remeasured. Results There were five fish mortalities within 48 h of tagging, resulting in an 87.8% overall survival rate. There were two fish mortalities from the 8-mm tag treatment and three mortalities from the 12-mm tag treatment. One fish from each tagging treatment lost their tag, resulting in a 5.6% overall tag loss rate. The Fisher’s exact test indicated no statistically significant difference in survival or tag loss between treatments. The ordinary least squares regression detected no effect of tag size on growth for Santa Ana Suckers. Conclusions Results suggest that 8- and 12-mm PIT tags are suitable options for tagging Santa Ana Suckers measuring at least 62 and 70 mm fork length, respectively. Supplementing the current sampling strategy with PIT tags could help monitoring efforts to expand spatially and temporally while providing expanded population data to inform adaptive management actions for the Santa Ana Sucker.

North American Journal of Fisheries Management↗

A hierarchical perspective of plant diversity

Predictive models of plant diversity have typically focused on either a landscapea??s capacity for richness (equilibrium models), or on the processes that regulate competitive exclusion, and thus allow species to coexist (nonequilibrium models). Here, we review the concepts and purposes of a hierarchical, multiscale model of the controls of plant diversity that incorporates the equilibrium model of climatic favorability at macroscales, nonequilibrium models of competition at microscales, and a mixed model emphasizing environmental heterogeneity at mesoscales. We evaluate the conceptual model using published data from three spatially nested datasets: (1) a macroscale analysis of ecoregions in the continental and western U.S.; (2) a mesoscale study in California; and (3) a microscale study in the Siskiyou Mountains of Oregon and California. At the macroscale (areas from 3889 km2 to 638,300 km2), climate (actual evaporation) was a strong predictor of tree diversity (R2 = 0.80), as predicted by the conceptual model, but area was a better predictor for vascular plant diversity overall (R2 = 0.38), which suggests different types of plants differ in their sensitivity to climatic controls. At mesoscales (areas from 1111 km2 to 15,833 km2 ), climate was still an important predictor of richness (R2 = 0.52), but, as expected, topographic heterogeneity explained an important share of the variance (R2 = 0.19), showed positive correlations with diversity of trees, shrubs, and annual and perennial herbs, and was the primary predictor of shrub and annual plant species richness. At microscales (0.1 ha plots), spatial patterns of diversity showed a clear unimodal pattern along a climatea??driven productivity gradient and a negative relationship with soil fertility. The strong decline in understory and total diversity at the most productive sites suggests that competitive controls, as predicted, can override climatic controls at this scale. We conclude that this hierarchical, multiscale model provides a sound basis to understand and analyze plant species diversity. Specifically, future research should employ the principles in this paper to explore climatic controls on species richness of different life forms, better quantify environmental heterogeneity in landscapes, and analyze how these largea??scale factors interact with local nonequilibrium dynamics to maintain plant diversity.

The Quarterly Review of Biology↗

Fifty-fifth Christmas Bird Count. 159. Ocean City, Md

The distribution of dynamic pressure behind a Harris' hawk's wing was sampled using a wake rake consisting of 15 pitot tubes and one static tube. The hawk was holding on to a perch, but at an air speed and gliding angle at which it was capable of gliding. The perch was instrumented, so that the lift developed by the wing was known and the lift coefficient could be calculated. The mean of 92 estimates of profile drag coefficient was 0.0207, with standard deviation 0.0079. Lift coefficients ranged from 0.51 to 1.08. Reynolds numbers were nearly all in the range 143000-194000. The estimates of profile drag coefficient were reconcilable with previous estimates of the wing profile drag of the same bird, obtained by the subtractive method, and also with values predicted by the `Airfoil-ii? program for designing aerofoils, based on a digitized wing profile from the ulnar region of the wing. The thickness of the wake suggested that the boundary layer was mostly or fully turbulent in most observations and separated in some, possibly as an active means of creating drag for control purposes. It appears that the bird could momentarily either increase or decrease the profile drag of specific parts of the wing, by active changes of shape, and it appeared to use the carpo-metacarpal region especially for such control movements. Further investigation in a low turbulence wind tunnel would help to resolve doubts about the possible influence of airstream turbulence on the behaviour of the boundary layer.

Journal of Experimental Biology↗

Intertidal biological indicators of coseismic subsidence during the Mw 7.8 Haida Gwaii, Canada, earthquake

The 28 October 2012 M w 7.8 Haida Gwaii earthquake was a megathrust earthquake along the very obliquely convergent Queen Charlotte margin of British Columbia, Canada. Coseismic deformation is not well constrained by geodesy, with only six Global Positioning System (GPS) sites and two tide gauge stations within 250 km of the rupture area. To better constrain vertical coseismic deformation, we measured the upper growth limits of two sessile intertidal organisms, which are controlled by physical conditions, relative to sea level at 25 sites 5 months after the earthquake. We measured the positions of rockweed ( Fucus distichus , 617 observations) and the common acorn barnacle ( Balanus balanoides , 686 observations). The study focused on the western side of the islands where rupture models indicated that the greatest amount of vertical displacement, but we also investigated sites well away from the inferred rupture area to provide a control on the upper limit of the organisms unaffected by vertical displacement. We also made 322 measurements of sea level to relate the growth limits to a tidal datum using the TPXO7.2 tidal model, rather than ellipsoid heights determined by GPS. Three methods of examining the data all indicate 0.4–0.6 m subsidence along the western coast of Moresby Island as a result of the 28 October 2012 Haida Gwaii earthquake. Our data are, within the errors, consistent with data from two campaign GPS sites along the west coast of Haida Gwaii and with rupture models that indicate megathrust rupture offshore, but not beneath, the islands.

Bulletin of the Seismological Society of America↗

Processes affecting the fate of monoaromatic hydrocarbons in an aquifer contaminated by crude oil

Crude oil spilled from a subsurface pipeline in north-central Minnesota has dissolved in the groundwater, resulting in the formation of a plume of aliphatic, aromatic, and alicyclic hydrocarbons. Comparison of paired oil and groundwater samples collected along the central axis of the residual oil body shows that the trailing edge of the oil is depleted in the more soluble aromatic hydrocarbons (e.g., benzene, toluene, etc.) when compared with the leading edge. At the same time, concentrations of monoaromatic hydrocarbons in groundwater beneath the oil increase as the water moves toward the leading edge of the oil. Immediately downgradient from the leading edge of the oil body, certain aromatic hydrocarbons (e.g., benzene) are found at concentrations near those expected of a system at equilibrium, and the concentrations exhibit little variation over time (???8-20%). Other compounds (e.g., toluene) appear to be undersaturated, and their concentrations show considerably more temporal variation (???20-130%). The former are persistent within the anoxic zone downgradient from the oil, whereas concentrations of the latter decrease rapidly. Together, these observations suggest that the volatile hydrocarbon composition of the anoxic groundwater near the oil body is controlled by a balance between dissolution and removal rates with only the most persistent compounds reaching saturation. Examination of the distributions of homologous series and isomeric assemblages of alkylbenzenes reveals that microbial degradation is the dominant process controlling the fate of these compounds once groundwater moves away from the oil. For all but the most persistent compounds, the distal boundary of the plume at the water table extends no more than 10-15 m down-gradient from the oxic/anoxic transition zone. Thus, transport of the monoaromatic hydrocarbons is limited by redox conditions that are tightly coupled to biological degradation processes.

Environmental Science & Technology↗

Extending the turbidity record: making additional use of continuous data from turbidity, acoustic-Doppler, and laser diffraction instruments and suspended-sediment samples in the Colorado River in Grand Canyon

Turbidity is a measure of the scattering and absorption of light in water, which in rivers is primarily caused by particles, usually sediment, suspended in the water. Turbidity varies significantly with differences in the design of the instrument measuring turbidity, a point that is illustrated in this study by side-by-side comparisons of two different models of instruments. Turbidity also varies with changes in the physical parameters of the particles in the water, such as concentration, grain size, grain shape, and color. A turbidity instrument that is commonly used for continuous monitoring of rivers has a light source in the near-infrared range (860±30 nanometers) and a detector oriented 90 degrees from the incident light path. This type of optical turbidity instrument has a limited measurement range (depending on pathlength) that is unable to capture the high turbidity levels of rivers that carry high suspended-sediment loads. The Colorado River in Grand Canyon is one such river, in which approximately 60 percent of the range in suspended-sediment concentration during the study period had unmeasurable turbidity using this type of optical instrument. Although some optical turbidimeters using backscatter or other techniques can measure higher concentrations of suspended sediment than the models used in this study, the maximum turbidity measurable using these other turbidimeters may still be exceeded in conditions of especially high concentrations of suspended silt and clay. In Grand Canyon, the existing optical turbidity instruments remain in use in part to provide consistency over time as new techniques are investigated. As a result, during these periods of high suspended-sediment concentration, turbidity values that could not be measured with the optical turbidity instruments were instead estimated from concurrent acoustic attenuation data collected using side-looking acoustic-Doppler profiler (ADP) instruments. Extending the turbidity record to the full range of sediment concentrations in the study area using data from the ADP instruments is particularly useful for biological studies. In Grand Canyon, turbidity has been correlated with food availability for aquatic organisms (gross primary production) as well as with fish behavior specific to predator-prey interactions. On the basis of the complete “extended” turbidity record and the relation between suspended-sediment concentration and turbidity, levels were higher before the construction of Glen Canyon Dam by a factor of approximately 2,000 at the Lees Ferry monitoring station (15 miles downstream from the dam) and by a factor of approximately 20 at the monitoring station 87 miles downstream from Lees Ferry (102 miles downstream from the dam). A comparison of turbidity data with data from Laser In-Situ Scattering and Transmissometry (LISST) laser-diffraction instruments, suspended-sediment concentration data, and ADP data shows the influence of the physical properties of suspended sediment. Apparent outliers in relations between turbidity, ADP, and suspended-sediment data during two events within the study period, a 2007 tributary flood from a watershed altered by a recent wildfire and a 2008 experimental controlled-flood release from Glen Canyon Dam, are explained in part by atypical grain sizes, shapes, densities, colors, and (or) clay mineral assemblages of suspended sediment occurring in the Colorado River during these two events. These analyses demonstrate the value of using multiple data-collection strategies for turbidity and sediment-transport studies and of continuous monitoring for capturing the full range and duration of turbidity and sediment-transport conditions, identifying the provenance of the sediment causing turbidity, and detecting physical and chemical processes that may be important for management of critical physical and biological resources.

Arizona↗

Avian Influenza spread and transmission dynamics

The spread of highly pathogenic avian influenza (HPAI) viruses of type A of subtype H5N1 has been a serious threat to global public health. Understanding the roles of various (migratory, wild, poultry) bird species in the transmission of these viruses is critical for designing and implementing effective control and intervention measures. Developing appropriate models and mathematical techniques to understand these roles and to evaluate the effectiveness of mitigation strategies have been a challenge. Recent development of the global health surveillance (especially satellite tracking and GIS techniques) and the mathematical theory of dynamical systems combined have gradually shown the promise of some cutting-edge methodologies and techniques in mathematical biology to meet this challenge.

Book chapter↗

Life on land needs fresh water (SDG 15)

Terrestrial ecosystems, such as forests, and the inland waters within them, such as bogs, floodplains, lakes, rivers, springs, and wetlands, are foundational for life on earth. They provide critical ecosystem services such as carbon storage and sequestration, clean water, primary production, pollination, soil fertility, and erosion control. The human footprint on terrestrial and freshwater ecosystems continues to expand, imposing pressures from deforestation, invasive species, climate change, overexploitation of species, and land conversion for agricultural production. The United Nations’ Sustainable Development Goal (SDG) 15 (Life on Land) aims to address these changes by promoting the protection, restoration, and sustainable use of terrestrial ecosystems globally. Freshwater ecosystem services and freshwater biological diversity are inherently part of, and critical to, achieving SDG 15; yet they remain absent from the goal and largely hidden within the targets and indicators. Here, we aim to highlight the role and importance of freshwater ecosystems in achieving SDG 15. We identify the six major themes of SDG 15 in which freshwater ecosystems have a preeminent role: (1) increasing protected areas, (2) sustainably managing forests, (3) reducing land degradation, (4) protecting threatened and trafficked species, (5) reducing invasive species, and (6) mobilizing resources. For each theme, we detail (a) freshwater connections to the topic, (b) key opportunities in addressing freshwater components, and (c) a relevant case study highlighting cobenefits for terrestrial ecosystems from actions targeting freshwater ecosystems. We conclude with opportunities for integrative terrestrial–aquatic monitoring, management, and policy actions. Ultimately, achieving the targets of SDG 15 requires recognition of terrestrial–aquatic interdependencies and prioritization of freshwater ecosystems and biodiversity.

Book chapter↗