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Eurasian (EA)-origin H5N8 clade 2.3.4.4 avian influenza viruses were first detected in North America during December 2014. Subsequent reassortment with North American (AM) low-pathogenic wild-bird-origin avian influenza has generated at least two reassortants, including an EA/AM H5N1 from an apparently healthy wild green-winged teal, suggesting continued ongoing reassortment.
Chronic wasting disease (CWD) is a transmissible spongiform encephalopathy afflicting the Cervidae family in North America, causing neurodegeneration and ultimately death. Although there are no reports of natural cross-species transmission of CWD to noncervids, infected deer carcasses pose a potential risk of CWD exposure for other animals. We placed 40 disease-free white-tailed deer (Odocoileus virginianus) carcasses and 10 gut piles in the CWD-affected area of Wisconsin (USA) from September to April in 2003 through 2005. We used photos from remotely operated cameras to characterize scavenger visitation and relative activity. To evaluate factors driving the rate of carcass removal (decomposition), we used KaplanMeier survival analysis and a generalized linear mixed model. We recorded 14 species of scavenging mammals (6 visiting species) and 14 species of scavenging birds (8 visiting species). Prominent scavengers included American crows (Corvus brachyrhynchos), raccoons (Procyon lotor), and Virginia opossums (Didelphis virginiana). We found no evidence that deer consumed conspecific remains, although they visited gut piles more often than carcasses relative to temporal availability in the environment. Domestic dogs, cats, and cows either scavenged or visited carcass sites, which could lead to human exposure to CWD. Deer carcasses persisted for 18 days to 101 days depending on the season and year, whereas gut piles lasted for 3 days. Habitat did not influence carcass decomposition, but mammalian and avian scavenger activity and higher temperatures were positively associated with faster removal. Infected deer carcasses or gut piles can serve as potential sources of CWD prions to a variety of scavengers. In areas where surveillance for CWD exposure is practical, management agencies should consider strategies for testing primary scavengers of deer carcass material.
In addition to human encephalitis and meningitis cases, the West Nile (WN) virus outbreak in the summer and fall of 1999 in New York State resulted in bird deaths in New York, New Jersey, and Connecticut. From August to December 1999, 295 dead birds were laboratory-confirmed with WN virus infection; 262 (89%) were American Crows ( Corvus brachyrhynchos ). The New York State Department of Health received reports of 17,339 dead birds, including 5,697 (33%) crows; in Connecticut 1,040 dead crows were reported. Bird deaths were critical in identifying WN virus as the cause of the human outbreak and defining its geographic and temporal limits. If established before a WN virus outbreak, a surveillance system based on bird deaths may provide a sensitive method of detecting WN virus.
Migratory routes of gulls, terns, and shorebirds (Charadriiformes) are known to cross hemispheric boundaries and intersect with outbreak areas of highly pathogenic avian influenza (HPAI). Prior assessments of low pathogenic avian influenza (LPAI) among species of this taxonomic order found some evidence for trans-hemispheric movement of virus genes. To specifically clarify the role of shorebird species in the trans-hemispheric movement of influenza viruses, assess the temporal variation of Eurasian lineages observed previously among North American shorebirds, and evaluate the necessity for continued sampling of these birds for HPAI in North America, we conducted a phylogenetic analysis of >700 contemporary sequences isolated between 2000 and 2008. Evidence for trans-hemispheric reassortment among North American shorebird LPAI gene segments was lower (0.88%) than previous assessments and occurred only among eastern North American isolates. Furthermore, half of the reassortment events occurred in just two isolates. Unique phylogenetic placement of these samples suggests secondary infection and or involvement of other migratory species, such as gulls. Eurasian lineages observed in North American shorebirds before 2000 were not detected among contemporary samples, suggesting temporal variation of LPAI lineages. Results suggest that additional bird migration ecology and virus phylogenetics research is needed to determine the exact mechanisms by which shorebirds in eastern North America become infected with LPAI that contain Eurasian lineage genes. Because of the low prevalence of avian influenza in non-eastern North America sites, thousands more shorebirds will need to be sampled to sufficiently examine genetic diversity and trans-hemispheric exchange of LPAI viruses in these areas. Alternatively, other avian taxa with higher virus prevalence could serve as surrogates to shorebirds for optimizing regional surveillance programs for HPAI through the LPAI phylogenetic approach.
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American white pelicans (Pelecanus erythrorhynchos) are colonial-nesting birds and their breeding sites are concentrated in a few small areas, making this species especially vulnerable to factors that can influence productivity, such as disease, disturbance, predation, weather events and loss of nesting habitat. Nearly half of the American white pelican population breeds at four colonies in the northern plains: Chase Lake National Wildlife Refuge (NWR) in North Dakota, Bitter Lake (Waubay NWR) in South Dakota, Medicine Lake NWR in Montana, and Marsh Lake in Minnesota. Thus, sustained productivity at these colonies is crucial to the health of the entire species. During the latter half of the 2002 and 2003 breeding seasons, unusually high mortality of pelican chicks was observed at these colonies. West Nile virus (WNv) was identified as one source of these losses. In 2004-2007 we monitored three major colonies in the northern plains to assess mortality of chicks during the late breeding season. We documented severe weather events, disturbance, and WNv as factors contributing to chick mortality. Before WNv arrived in the region in 2002, chick mortality after mid-July was ???4%, and then jumped to as high as 44% in the years since WNv arrived. WNv kills older chicks that are no longer vulnerable to other common mortality factors (e.g., severe weather, gull predation) and typically would have survived to fledge; thus WNv appears to be an additive mortality factor. Persistence of lower productivity at American white pelican colonies in the northern plains might reduce the adult breeding population of this species in the region.
The Mexican Ixtoc oil well blowout resulted in extensive oil contamination along the Texas Gulf coast. This oil posed a potential hazard to migrating birds including the endangered peregrine falcon (Falco peregrinus). Laboratory tests with the American kestrel (Falco sparverius) indicated that the oil: water mixture gathered at the surface of the blowout site posed little acute hazard to falcons.
Features that determine the composition of avian communities have received extensive and enthusiastic attention, both empirically and theoretically (e.g., Cody 1974; Strong et al. 1984; Wiens, 1989a,b). Interspecific competition for limited resources is one influence widely regarded as critical, but others include species-specific responses to environmental conditions, predation, parasitism, commensal and mutualistic interactions, disturbance and chance, and historical events (Wiens, 1989b). Despite the attention they have received, the relative importance of the different features remains highly controversial. Certainly the community of birds present in an area will be but a subset of the total population of each constituent species; thus, the total population size of each species is a potential influence on local communities. Since many bird communities in the temperate zone are reconstituted annually with migrants, the geographical location of a site within the breeding range is an important feature; clearly, an avian community outside the normal breeding range of a particular species is unlikely to include that species, irrespective of the suitability of vegetation and other habitat features. Further, suitable habitat encountered earlier in spring migration is more likely to be occupied than is habitat encountered later. And the breeding ranges of birds are known to shift from year to year, depending on climatic conditions, a phenomenon that represents a modification of the general breeding range at a finer scale of resolution. The return of migrant birds to areas from which they fledged or where they previously bred modifies the occupancy of a particular habitat (HildTn 1964); likewise, traditional use of breeding sites by birds can induce species to persist in unsuitable habitat (Wiens 1985). Thus site fidelity can weaken the relationship between habitat quality and number of birds on an area (Wiens 1985). Waterfowl have received less attention from community ecologists than have many other groups of birds despite the importance attributed to waterfowl by biologists more generally, as well as by the public. Exceptions include work by Nudds and colleagues in Canada and by P?ysS and colleagues in Finland (see Nudds 1992 and references contained therein). Further, waterfowl are important ecologically; in much of the prairie of the North American midcontinent, waterfowl are numerically among the most common bird species and are certainly dominant in terms of biomass. This chapter addresses some influences on waterfowl communities in mixed-grass prairie pothole habitat. It takes a temporal perspective, based on annual censuses of breeding ducks for 25 years on a specific study area at Woodworth, North Dakota. Any changes in the structural features of the habitat that may have occurred during this period at the census site were at most gradual. I examine how the waterfowl communities varied in response to influences that did change annually, such as climate, conditions of the wetlands on the study area, the regional populations of birds from which the communities were constituted, and the population at Woodworth during the previous year. The results of the analyses are interpreted relative to individual characteristics of 11 waterfowl species: Mallard ( Anas platyrhynchos ), Gadwall ( Anas strepera ), Green-winged Teal ( Anas crecca ), Blue-winged Teal ( Anas discors ), Northern Pintail ( Anas acuta ), Northern Shoveler ( Anas clypeata ), American Wigeon ( Anas americana ), Canvasback ( Aythya valisineria ), Redhead ( Aythya americana ), Lesser Scaup ( Aythya affinis ), and Ruddy Duck ( Oxyura jamaicensis ).
In eastern North America, after the young fledge, both adult and juvenile mature-forest birds may use regenerating clearcuts, although which species frequent early-successional forest and during which life stages is not well documented. To assess whether birds nesting in mature forest in north-central Minnesota use regenerating clearcuts 2–10 years old, we netted after birds fledged (2006–2009) and during the breeding season (2009). In addition, we monitored Ovenbird ( Seiurus aurocapilla ) nests and banded nestlings in adjacent mature forest and estimated the age at which juveniles used regenerating clearcuts. While banding, we also recorded nests of any species encountered opportunistically in regenerating clearcuts as evidence of breeding in this cover type. During July and August, we captured 4556 birds of 62 species, of which 1746 (38%) were of 28 mature-forest species. As reported elsewhere, most (76%) mature-forest birds we captured were of only a few species: Ovenbird, American Redstart ( Setophaga ruticilla ), Least Flycatcher ( Empidonax minimus ), and Black-and-white Warbler ( Mniotilta varia ). In 2009, 21% of captures during the nesting period were of mature-forest birds. Comparing dates of fledging from monitored nests to dates of capture in clearcuts implies that nearly all (95%) hatch-year Ovenbirds using clearcuts were independent of adult care. Capture dates of juveniles of other mature-forest species were similar. Although we captured 340 hatch-year Ovenbirds in regenerating clearcuts, we captured only one of 424 Ovenbirds we had banded as nestlings in adjacent mature forest. Within the clearcuts, we encountered nests of five species that typically nest in mature forest.
Nocturnal activity and foraging of 39 radio-equipped raccoons ( Procyon lotor ) in eastern North Dakota were studied from April-July in 1974-1976. Sixteen of the raccoons were collected after foraging bouts for stomach content analysis. Raccoon activity consisted of running (13%), walking (49%) and local movement in confined areas (38%). Local movement was foraging on large or locally abundant food items. Adult males traveled farther in a night, ran twice as often, and moved locally only half as often as adult females and yearlings. Differences in activity patterns between adult females and yearlings were not detected. There was no difference among age-sex groups in use of foraging habitats. All raccoons foraged extensively in farmyards and wetlands. Stomach content analysis substantiated foraging determinations obtained by radiotelemetry. Principal foods were grain, aquatic animals, rodents, birds and bird eggs.
Serum samples from a total of 71 healthy captive birds belonging to 18 species were collected in July of 2008 in Medellin (Colombia) and tested for flaviviruses. Eighteen of 29 samples from American Flamingoes (Phoenicopterus ruber) were positive for West Nile virus (WNV) by reverse transcription-polymerase chain reaction. Selected positive samples were serially passaged and WNV was confirmed by immunofluorescence. Two isolates (524/08, 9835/08) were characterized in vitro and in vivo. Sequence analysis revealed WNV with 16 nucleotide substitutions resulting in six amino acid changes when compared with the NY99 strain. Colombian (COL) viruses were more closely related to Louisiana isolates from 2001. When compared with attenuated strains isolated from Texas, COL isolates differed in their plaque size and temperature sensitivity phenotype. The COL viruses were pathogenic in embryonated chicken eggs and Balb/c mice.
Avian influenza virus (AIV) is influenced by site fidelity and movements of bird hosts. We examined the movement ecology of American crows ( Corvus brachyrhynchos ) as potential hosts for West Nile virus (WNV) and greater white-fronted geese ( Anser albifrons frontalis ) as potential hosts for AIVs. Research was based on radio-telemetry studies conducted in the Central Valley of California, USA. While crows were restricted to a small area of only a few square kilometers, the distribution of the geese encompassed the northern Central Valley. The crows used 1.5 to 3.5 different roosting areas monthly from February through October, revealing lower roost fidelity than the geese that used 1.1 to 1.5 roosting areas each month from November through March. The crows moved a mean distance of 0.11 to 0.49 km/month between their roosting sites and 2.5 to 3.9 km/month between roosting and feeding sites. In contrast, the geese moved 4.2 to 19.3 km/month between roosting areas, and their feeding range varied from 13.2 to 19.0 km/month. Our comparison of the ecological characteristics of bird movements suggests that the limited local movements of crows coupled with frequent turnover of roosts may result in persistence of focal areas for WNV infection. In contrast, widespread areas used by geese will provide regular opportunities for intermixing of AIVs over a much greater geographic area.
Determining the degree of connectivity between breeding and wintering populations is critical for understanding the ecology and evolution of migratory systems. We analyzed stable hydrogen isotopic compositions in tail feathers ($Dw) collected from 26 sites in 11 countries throughout the wintering range of the American Redstart (Setophaga ruticilla), a Nearctic- Neotropical migratory passerine bird. Feathers were assumed to have molted on the breeding grounds, and $Dw was used to estimate breeding origin. Values of $Dw were highly correlated with longitude of sampling location, indicating that breeding populations were generally distributed along the east-west axis of the wintering grounds. Within the Caribbean region, Florida, and Bahamas, $Dw values were negatively correlated with winter latitude, which suggests that American Redstarts exhibit a pattern of chain migration in which individuals wintering at northern latitudes are also the most northern breeders. To identify the most probable breeding regions, we used a likelihood-assignment test incorporated with a prior probability of breeding abundance using Bayes?s rule. Expected $D values of feathers from five breeding regions were based on interpolated $D values from a model of continent-wide growing-season $D values in precipitation ($Dp) and were adjusted to account for a discrimination factor between precipitation and feathers. At most wintering locations, breeding assignments were significantly different from expected frequencies based on relative breeding abundance. Birds wintering in eastern and western Mexico had a high probability of breeding in northwest and midwest North America, whereas birds in the Greater and Lesser Antilles were likely to have originated from breeding regions in the northeast and southeast, respectively. Migratory connectivity, such as we report here, implies that the dynamics of breeding and nonbreeding populations may be linked at a regional scale. These results provide a key opportunity for studying the year-round ecology and evolution of spatially connected populations in a migratory species.
Subsurface agricultural drainage waters from western San Joaquin Valley, California, were found to contain elevated concentrations of the element selenium in the form of selenate. In 1978, these drainage waters began to replace previous input to Kesterson Reservoir, a pond system within Kesterson National Wildlife Refuge; this substitution was completed by 1982. In the 1983 nesting season, unusual rates of deformity and death in embryos and hatchlings of wild aquatic birds (up to 64% of eared grebe and American coot nests) occurred at the refuge and were attributed to selenium toxicosis. Features necessary for contamination to have taken place included geologic setting, climate, soil type, availability of imported irrigation water, type of irrigation, and the unique chemical properties of selenium. The mechanisms of biogeochemical cycling raise questions about other ecosystems and human exposure.
The Whooping Crane ( Grus americana ), endemic to North America, is the rarest of all crane species. It is believed that in the early 1800s, the Whooping Crane was widespread in North America, though it was never very abundant. Whooping Crane numbers decreased precipitously as westward migration of Euro-American settlers converted prairie to cropland and the birds were hunted. By the early 1940s the total population was as low as 21 individuals; the migratory Aransas-Wood Buffalo Population, from which all extant Whooping Cranes are descended, dwindled to 16 in 1941. The threat of extinction was very real. These dire circumstances excited the interest of ornithologists and conservationists in the United States and Canada, and much has been accomplished since to conserve the species. To describe the historical and ongoing conservation activities for Whooping Cranes, we distinguish two eras of Whooping Crane Conservation: before 1950 and after 1950. The first era was characterized by publicizing the plight of the Whooping Crane and halting hunting and habitat destruction. The second era, continuing to the present, has been characterized by development of information about cranes through scientific study, conservation efforts of governmental and nongovernmental organizations, protection of the species under the Endangered Species Act in the United States and the Species at Risk Act in Canada, habitat protection, and reintroduction of new populations of Whooping Cranes. Publication of the monograph, The Whooping Crane by Robert Porter Allen, in 1952 stimulated much of the work of the second era, and still stands as the definitive work on the biology of Whooping Cranes. The remnant Aransas Wood Buffalo Population, which is crucial to species recovery, has grown to over 430 birds as of winter 2016–17. Four reintroduced populations were started in the second era; two are currently active efforts (the Eastern Migratory population and the Louisiana Nonmigratory Population), although neither population is selfsustaining. This volume gathers together the current scientific information about Whooping Cranes and the experiences of various reintroduction and management operations, to provide a baseline from which a third era of Whooping Crane conservation may be launched.
Four key marine petroleum source rock units were identified, characterized, and mapped in the subsurface to better understand the origin and distribution of petroleum on the North Slope of Alaska. These marine source rocks, from oldest to youngest, include four intervals: (1) Middle-Upper Triassic Shublik Formation, (2) basal condensed section in the Jurassic-Lower Cretaceous Kingak Shale, (3) Cretaceous pebble shale unit, and (4) Cretaceous Hue Shale. Well logs for more than 60 wells and total organic carbon (TOC) and Rock-Eval pyrolysis analyses for 1183 samples in 125 well penetrations of the source rocks were used to map the present-day thickness of each source rock and the quantity (TOC), quality (hydrogen index), and thermal maturity (Tmax) of the organic matter. Based on assumptions related to carbon mass balance and regional distributions of TOC, the present-day source rock quantity and quality maps were used to determine the extent of fractional conversion of the kerogen to petroleum and to map the original TOC (TOCo) and the original hydrogen index (HIo) prior to thermal maturation. The quantity and quality of oil-prone organic matter in Shublik Formation source rock generally exceeded that of the other units prior to thermal maturation (commonly TOCo > 4 wt.% and HIo > 600 mg hydrocarbon/g TOC), although all are likely sources for at least some petroleum on the North Slope. We used Rock-Eval and hydrous pyrolysis methods to calculate expulsion factors and petroleum charge for each of the four source rocks in the study area. Without attempting to identify the correct methods, we conclude that calculations based on Rock-Eval pyrolysis overestimate expulsion factors and petroleum charge because low pressure and rapid removal of thermally cracked products by the carrier gas retards cross-linking and pyrobitumen formation that is otherwise favored by natural burial maturation. Expulsion factors and petroleum charge based on hydrous pyrolysis may also be high compared to nature for a similar reason. Copyright ?? 2006. The American Association of Petroleum Geologists. All rights reserved.
The National Oil and Gas Assessment of undiscovered recoverable conventional oil and gas resources assigned nearly 36% of the undiscovered U.S. onshore oil resources and 28% of the commercially developable undiscovered oil resources to onshore northern Alaska. Economic screening models were applied to the geologic play assessment to estimate the commercially developable resources. This paper presents the geologic and economic assessment methodology and results; it also focuses on the robustness of estimates of the commercially developable onshore resources to changes in economic assumptions. With the economic assumptions used in the national assessment, about 60% or 6.49 billion bbl of oil of the recoverable undiscovered resources of 10.76 billion bbl of oil assessed in fields larger than 1 million bbl of oil are estimated to be commercially developable. Changes in facilities costs induced the most significant cost-related response in the commercially developable resource estimates. Price increases or cost reductions that reduce the minimum commercially developable field size to 250 million bbl from the base case size of 380 million bbl added 1 billion bbl of oil to the commercially developable resources. If, through facilities sharing or satellite-field development, the minimum commercial field size is reduced to just below 100 million bbl, estimated developable oil woul increase to 9.17 billion bbl of oil or more than 85% of the assessed recoverable oil in onshore plays.
Because of its geographic position, Louisiana plays an important role in the hemispheric-scale phenomenon known as the Nearctic-Neotropical bird migration system. Each year millions of landbirds migrate across or near to the coast of the Gulf of Mexico. Birds migrate in large, broad fronts that sometimes exceed 2 million individuals, and there is an advantage for them to take a direct north-south route (the shortest distance). During migration seasons, nearly all of the migratory landbird species of the eastern United States, as well as many western species, use the coastal plains of the western gulf. Spring migrants arrive with depleted energy reserves and depend on Louisiana's coastal habitats to provide food and cover after long gulf crossings. Fall migrants depend on Louisiana’s coastal habitats for food to store fat reserves just prior to gulf crossings in autumn. Mortality during the migratory period can be high. Recent research on the black-throated blue warbler ( Dendroica caerulescens ) indicates that more than 85% of the annual mortality for the species occurs during migration. Migrants en route tend to concentrate in habitats adjacent to ecological barriers; DOI land managers need to identify key coastal landscape features that are important to these birds. Because of the vastness of the North American continent, it is nearly impossible to delineate movement patterns and migration pathways by using traditional ground-based surveys.