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Landscape community genomics: understanding eco-evolutionary processes in complex environments

Extrinsic factors influencing evolutionary processes are often categorically lumped into interactions that are environmentally (e.g., climate, landscape) or community-driven, with little consideration of the overlap or influence of one on the other. However, genomic variation is strongly influenced by complex and dynamic interactions between environmental and community effects. Failure to consider both effects on evolutionary dynamics simultaneously can lead to incomplete, spurious, or erroneous conclusions about the mechanisms driving genomic variation. We highlight the need for a landscape community genomics (LCG) framework to help to motivate and challenge scientists in diverse fields to consider a more holistic, interdisciplinary perspective on the genomic evolution of multi-species communities in complex environments.

Trends in Ecology and Evolution↗

Use of a wetland index to evaluate changes in riparian vegetation after livestock exclusion

A method was developed to characterize ecological integrity of riparian sites based on the abundance of hydric species. This wetland index can be calculated with species data, or with community type data as performed here. Classified riparian community types were used to describe vegetation at 14 livestock exclosures and adjacent grazed areas. Community type wetland index values were generated and used to calculate site wetland index values. It was hypothesized that removal of livestock would result in higher wetland index values because of release from herbivory and decreased physical disturbance of vegetation, streambanks, and soil. The wetland index for exclosures was about 12% higher than grazed sites; differences were statistically significant (p < 0.01) based on paired t-tests. The increase in hydric vegetation after livestock exclusion may have contributed to the greater bank stability (p = 0.002) and smaller width-to-depth ratio (p = 0.005) in exclosures. Challenges were encountered in using community types to describe and compare site vegetation, which could be avoided with species data collection. The wetland index can be a tool to monitor sites over time, compare sites with similar environments, or compare sites for which environmental differences can be accounted.

Journal of the American Water Resources Associatio↗

Compilation and evaluation of data used to identify groundwater sources under the direct influence of surface water in Pennsylvania

A study was conducted to compile and evaluate data used to identify groundwater sources that are under the direct influence of surface water (GUDI) in Pennsylvania. In the early 1990s, the Pennsylvania Department of Environmental Protection (PADEP) implemented the Surface Water Identification Protocol (SWIP) for the identification of GUDI sources. Since the establishment of the SWIP, PADEP has classified more than 500 individual sources across Pennsylvania as GUDI, but Pennsylvania’s complex geology and physiography provide a challenge for a uniform method of GUDI determination. Components used in this study to compile and evaluate data associated with GUDI determination include: (1) a preliminary review of file information for 43 public water-supply wells, (2) quality control and addition of data to PADEP’s database for public water-supply systems to prepare data for analysis, and (3) exploratory evaluation of existing GUDI sources in the database with respect to hydrogeologic and source-construction characteristics that are currently utilized in the assessment methodology. Case files for 43 wells from PADEP’s Northcentral and Southcentral regions were reviewed to: (1) provide a better understanding of how the SWIP was applied in practice, (2) verify and compile missing data, and (3) find additional attributes not previously available that might explain a well’s categorization as GUDI. Review of file information showed that the SWIP outlined in PADEP technical guidance was usually followed, but for some sources, the GUDI determination was more complex and could not be easily summarized. Data compiled for study analyses provided by PADEP include source data derived from public water-supply system case files, a source-information database for public water-supply systems, and Microscopic Particulate Analysis (MPA) results and associated water-quality data for public water-supply system groundwater sources. Data from the Pennsylvania Drinking Water Information System (PADWIS) , which is PADEP’s database for public water-supply systems, were also used for this study. The PADWIS database originally included data for 12,147 groundwater sources (11,812 groundwater sources not under the direct influence of surface water (non-GUDI) wells and 335 GUDI wells). A subset (4,018 wells consisting of 3,842 non-GUDI wells and 175 GUDI wells) of the PADWIS database was created for an analysis and includes only community wells evaluated in accordance with the SWIP. MPA results for 631 community and noncommunity wells were compiled, along with associated water-quality data (alkalinity, chloride, Escherichia coli , fecal coliform, nitrate, pH, sodium, specific conductance, sulfate, total coliform, total dissolved solids, total residue, and turbidity) populated from the PADEP Bureau of Laboratories Sample Information System. Data compiled from sources other than PADEP include spatial data, both naturogenic (for example, average precipitation or distance to closest hydrologic feature) and anthropogenic (for example, percentage of developed or agricultural land cover within a specific vicinity of a public water-supply system well) data representing spatially derived variables. Comparison among wells in the PADWIS dataset subset using the nonparametric Kruskal-Wallis test showed that GUDI wells had significantly older median construction years, shallower depths, and static water levels closer to the land surface than non-GUDI wells and that carbonate aquifers had the highest percentages of wells designated as GUDI (12 percent; 57 wells). Further comparison of wells in the PADWIS database subset using the Spearman’s rho monotonic correlation test illustrated that public water-supply wells designated as GUDI largely occur in unconfined aquifers and have high average yield and shallow static water levels. Assessment of the MPA database subset using the Kruskal-Wallis test showed wells with MPA total risk-factor scores that exceeded zero had older median construction years and shallower casing depths than wells with MPA total risk-factor scores of zero and that carbonate aquifers had the highest percentages of wells with MPA total risk-factor scores exceeding zero (30 percent; 63 wells). Spearman’s rho correlations showed that wells completed in aquifers with depths to major water-bearing zones closer to the land-surface had higher total risk-factor scores resulting from MPA samples. Based on the results of the analyses described in this report, broad conclusions can be drawn regarding site-specific well characteristics as well as anthropogenic and naturogenic factors that could be responsible for a well being designated as GUDI, but the accuracy of these results is dependent on the quality of the data being analyzed. Ultimately, study results serve as an added resource for initial desktop screening of wells to determine if additional site-specific investigation is warranted and underscore the need for field evaluation.

Pennsylvania↗

Navigating climate adaptation on public lands: How views on ecosystem change and scale interact with management approaches

Managers are increasingly being asked to integrate climate change adaptation into public land management. The literature discusses a range of adaptation approaches, including managing for resistance, resilience, and transformation; but many strategies have not yet been widely tested. This study employed in-depth interviews and scenario-based focus groups in the Upper Gunnison Basin in Colorado to learn how public land managers envision future ecosystem change, and how they plan to utilize different management approaches in the context of climate adaptation. While many managers evoked the past in thinking about projected climate impacts and potential responses, most managers in this study acknowledged and even embraced (if reluctantly) that many ecosystems will experience regime shifts in the face of climate change. However, accepting that future ecosystems will be different from past ecosystems led managers in different directions regarding how to respond and the appropriate role of management intervention. Some felt management actions should assist and even guide ecosystems toward future conditions. Others were less confident in projections and argued against transformation. Finally, some suggested that resilience could provide a middle path, allowing managers to help ecosystems adapt to change without predicting future ecosystem states. Scalar challenges and institutional constraints also influenced how managers thought about adaptation. Lack of institutional capacity was believed to constrain adaptation at larger scales. Resistance, in particular, was considered impractical at almost any scale due to institutional constraints. Managers negotiated scalar challenges and institutional constraints by nesting different approaches both spatially and temporally.

Environmental Management↗

A long-term study of ecological impacts of river channelization on the population of an endangered fish: Lessons learned for assessment and restoration

Projects to assess environmental impact or restoration success in rivers focus on project-specific questions but can also provide valuable insights for future projects. Both restoration actions and impact assessments can become “adaptive” by using the knowledge gained from long-term monitoring and analysis to revise the actions, monitoring, conceptual model, or interpretation of findings so that subsequent actions or assessments are better informed. Assessments of impact or restoration success are especially challenging when the indicators of interest are imperiled species and/or the impacts being addressed are complex. From 1997 to 2015, we worked closely with two federal agencies to monitor habitat availability for and population density of Roanoke logperch ( Percina rex ), an endangered fish, in a 24-km-long segment of the upper Roanoke River, VA. We primarily used a Before-After-Control-Impact analytical framework to assess potential impacts of a river channelization project on the P. rex population. In this paper, we summarize how our extensive monitoring facilitated the evolution of our (a) conceptual understanding of the ecosystem and fish population dynamics; (b) choices of ecological indicators and analytical tools; and (c) conclusions regarding the magnitude, mechanisms, and significance of observed impacts. Our experience with this case study taught us important lessons about how to adaptively develop and conduct a monitoring program, which we believe are broadly applicable to assessments of environmental impact and restoration success in other rivers. In particular, we learned that (a) pre-treatment planning can enhance monitoring effectiveness, help avoid unforeseen pitfalls, and lead to more robust conclusions; (b) developing adaptable conceptual and analytical models early was crucial to organizing our knowledge, guiding our study design, and analyzing our data; (c) catchment-wide processes that we did not monitor, or initially consider, had profound implications for interpreting our findings; and (d) using multiple analytical frameworks, with varying assumptions, led to clearer interpretation of findings than the use of a single framework alone. Broader integration of these guiding principles into monitoring studies, though potentially challenging, could lead to more scientifically defensible assessments of project effects.

Water↗

Pollution and wildlife health

Pollution is a pervasive and growing threat to wildlife health. This chapter discusses two broad groups of pollution, those whose abatement could have immediate beneficial effects including light, air, and noise pollution, and those that will take relatively longer to address due to their environmental persistence or their continuing discharge. Whilst we are very good at detecting the presence of pollutants in tissues or the environment, making a convincing link between the presence of these compounds and mortality events in the field or population effects will remain a challenge for the foreseeable future. Creative new approaches are also being considered to mitigate the effects of pollution on wildlife and ecosystems. Depending on the source of pollution, the beneficial outcomes of mitigation measures, if properly implemented, could have immediate effects. Given the plethora of potential adverse pollution effects, frameworks to prioritize which threats are most likely to cause adverse effects and develop means to address or manage them are an imperative. In the interim, focusing on preserving existing habitats and reducing our footprint by adjusting human activities to minimize the release of pollutants into the environment will go a long way toward promoting healthy wildlife and ecosystems.

Book chapter↗

Exploring the science and data foundation for Federal public lands decisions

Public lands provide diverse resources, values, and services worldwide. Laws and policies typically require consideration of science in public lands decisions, and resource managers are committed to science-informed decision-making. However, it can be challenging for managers to use, and document the use of, science and data in their decisions. To better understand science and data use in Federal public lands decisions in the United States, we assessed the number, type, and age of documents cited in 70 Environmental Assessments (EAs) completed by the Bureau of Land Management (BLM) in Colorado from 2015–2019. We focused on the BLM, as they manage the largest area of public lands in the United States. We selected Colorado as our study area, as actions proposed on BLM lands in Colorado are representative of those across the nation. Fifty percent of citations were categorized as science and 23% as data. EAs contained an average of 17 citations (range 0–111), with documents analyzing effects of oil and gas development and recreation actions including the highest and lowest mean number of citations (41 and 6, respectively). Of individual resource analysis sections within EAs, 24% contained ≥1 science citation and 21% contained ≥1 data citation. Journal articles were the most cited type of document (26% of citations) followed by non-BLM inventories (13%). Forty-seven percent of citations were relatively recent (2010 or later); the oldest citation was from 1927. Commonly analyzed resources with the highest mean number of citations were socioeconomics, mineral resources, and noise. Fourteen of 33 commonly analyzed resources included <1 citation on average. Actions and resources with no or few citations represent opportunities for strengthening the transparent use of science and data in public lands decision-making.

Colorado↗

Assemblages of fishes and their associations with environmental variables, lower San Joaquin River drainage, California

Twenty sites in the lower San Joaquin River drainage, California, were sampled from 1993 to 1995 to characterize fish assemblages and their associations with measures of water quality and habitat quality. In addition, four fish community metrics were assessed, including percentages of native fish, omnivorous fish, fish intolerant of environmental degradation, and fish with external anomalies. Of the 31 taxa of fish captured during the study, only 10 taxa were native to the drainage. Multivariate analyses of percentage data identified four site groups characterized by characterized by different groups of species. The distributions of fish species were related to specific conductance, gradient, and mean depth; however, specific conductance acted as a surrogate variable for a large group of correlated variables. Two of the fish community metrics--percentage of introduced fish and percentage of intolerant fish--appeared to be responsive to environmental quality but the responses of the other two metrics--percentage of omnivorous fish and percentage of fish with anomalies--were less direct. The conclusion of the study is that fish assemblages are responsive to environmental conditions, including conditions associated with human-caused disturbances, particularly agriculture and water development. The results suggest that changes in water management and water quality could result in changes in species distributions. Balancing the costs and benefits of such changes poses a considerable challenge to resource managers. different groups of species.

Open-File Report↗

Supporting the development and use of native plant materials for restoration on the Colorado Plateau (Fiscal Year 18 Report)

Introduction A primary focus of the Colorado Plateau Native Plant Program (CPNPP) is to identify and develop appropriate native plant materials (NPMs) for current and future restoration projects. Multiple efforts have characterized the myriad challenges inherent in providing appropriate seed resources to enable effective, widespread restoration and identified a broad suite of research activities to provide the information necessary to overcome those challenges (e.g., Plant Conservation Alliance 2015; Breed et al. 2018). Many of the most complex information needs relate to identifying the appropriate plant species and populations that can successfully establish in dryland environments, like the Colorado Plateau, where low and highly variable precipitation is standard. Providing this information requires synergistic research efforts in which results from earlier investigations inform the design of subsequent investigations. Southwest Biological Science Center’s (SBSC’s) research activities in FY18 followed the FY18 Statement of Work (“Research supporting native plant materials development for the Colorado Plateau Native Plant Program, FY18”) to support a research framework that is continually adapting based on the needs of the restoration community and results from previous investigations; the long-term research framework is now outlined in the 2019-2023 5-Year Research Strategy (discussed below; hereafter referred to as the 5-Year Research Strategy). This research framework provides support for the National Seed Strategy for Rehabilitation and Restoration (Plant Conservation Alliance, 2015), Department of Interior Secretarial Order #3347 (Conservation Stewardship and Outdoor Recreation), and Bureau of Land Management Leadership Priority #1 (Create a conservation stewardship legacy second only to Teddy Roosevelt). The overall focus of activities in FY18 centered on landscape genetics and planning for common garden and other research projects. These activities were supported by two biological technicians that were hired and trained by Dr. Rob Massatti and Dr. Daniel Winkler. Many of the field-related activities, including plant trait measurement and seed/tissue collecting, were assigned to these technicians, which freed Dr. Massatti to work on other research objectives, including the time-consuming activities of processing and analyzing genetic data. A major challenge to field work in FY18 was the drought conditions that pervaded the Plateau during the spring field season. Due to low winter and spring precipitation, many plant communities did not green up in the spring, which prevented the biological technicians from collecting plant trait data, tissues samples, and seeds in many areas. To cope with the dry conditions, the technicians searched sites across a wider range of environmental space and considered a broader suite of species from which to collect data (i.e., species that may be included in research projects in future years). Monsoonal precipitation starting in July supported a late summer/fall field season and allowed the technicians to follow a more normal work plan. While Dr. Massatti was the only scientist supported by the SBSC-CPNPP agreement in FY18, other scientists, including Drs. John Bradford, Seth Munson, Mike Duniway, Sasha Reed, Daniel Winkler, and Jayne Belnap, spent a considerable amount of time discussing individual projects and the newly developed 5-Year Research Strategy. Some of these discussions resulted in a publication by Dr. Winkler, in addition to a large group of researchers, practitioners, and others who work on the Colorado Plateau, concerning the restoration challenges facing the Plateau into the future and the types of efforts that may support successful restoration (Winkler et al., 2018).

Colorado↗

Dynamics of land-use change and conservation in the Prairie Pothole Region of the United States: environmental and economic implications with linkages to rural community well-being

Rural America has changed dramatically over the last century, from having over half the population living in rural settings to only 20 percent residing in a rural area today, and outmigration of younger populations from rural communities remains a constant issue for local governing officials. A declining tax base and concurrent rising costs for maintenance and repair of aging infrastructure add further challenges to policy decisions. Reduced enrollment has caused school closures or mergers. Farm consolidation and technical advances reduced the demand for local labor. On the positive side, however, record-high commodity prices have amplified farm income to new heights. The increased revenues can lead to farmers spending additional money within the local region, while at the same time increased transportation of products has impacted local infrastructure such as roads and bridges. Such dynamics present challenges for municipal leaders charged with promoting economic development and balanced spending, while at the same time maintaining the way of life and rural character that are so important to area residents. The Prairie Pothole Region (PPR) of the United States covers much of the Northern Great Plains, including parts of North and South Dakota, Minnesota, Iowa, and a small part of Montana, and extends across a broad swath of Alberta and Saskatchewan. The region is defined largely by its rural character but has experienced extensive land conversion over the last century, with agricultural areas replacing native prairie habitat. Additional pressures arise from oil and gas development, global markets for agricultural production, and increased demands for biofuel feedstocks. Record-high commodity prices increase pressure on the native prairie as farmers look for new cropland acres. The volatility of commodity prices has raised fears over the intensity of land conversion to row-crop agriculture, the economic health and resiliency of rural communities, and ultimately, population dynamics and outmigration of younger generations. Land-use pressures are increased by the exponential growth of oil and gas production in the region, where some 8,200 wells are now in production within the Williston Basin of North Dakota, accompanied by increased population pressures on housing and municipal services. The U.S. Department of Agriculture’s Conservation Reserve Program (CRP)--a cropland retirement program with close to 4.8 million acres enrolled in the PPR--faces uncertainty in upcoming legislative actions, with a large majority of property enrollments scheduled to expire by 2017. The CRP historically has provided improved habitat conditions, reductions of soil damage through erosion and loss of nutrients, and sequestration of millions of tons of atmospheric carbon. In turn, wildlife-related recreation levels have increased in many parts of the PPR, with money spent in local communities. Contemporary resource-management and rural-development planning increasingly emphasize the need for diversification and integration of resource-extractive industries with nonmarket-based recreational and amenity values that tie into quality of life. Ultimately, each community is unique in its environmental, social, economic, and fiscal endowments. One rural-development policy may work better in one community than another. In addition, rural-development issues such as migration, job growth, and taxes are diverse in themselves. The goal of this report is to qualitatively and quantitatively discuss the economic impacts of land-use decisions in rural areas, particularly in the PPR.

Professional Paper↗

Integrated environmental modeling: a vision and roadmap for the future

Integrated environmental modeling (IEM) is inspired by modern environmental problems, decisions, and policies and enabled by transdisciplinary science and computer capabilities that allow the environment to be considered in a holistic way. The problems are characterized by the extent of the environmental system involved, dynamic and interdependent nature of stressors and their impacts, diversity of stakeholders, and integration of social, economic, and environmental considerations. IEM provides a science-based structure to develop and organize relevant knowledge and information and apply it to explain, explore, and predict the behavior of environmental systems in response to human and natural sources of stress. During the past several years a number of workshops were held that brought IEM practitioners together to share experiences and discuss future needs and directions. In this paper we organize and present the results of these discussions. IEM is presented as a landscape containing four interdependent elements: applications, science, technology, and community. The elements are described from the perspective of their role in the landscape, current practices, and challenges that must be addressed. Workshop participants envision a global scale IEM community that leverages modern technologies to streamline the movement of science-based knowledge from its sources in research, through its organization into databases and models, to its integration and application for problem solving purposes. Achieving this vision will require that the global community of IEM stakeholders transcend social, and organizational boundaries and pursue greater levels of collaboration. Among the highest priorities for community action are the development of standards for publishing IEM data and models in forms suitable for automated discovery, access, and integration; education of the next generation of environmental stakeholders, with a focus on transdisciplinary research, development, and decision making; and providing a web-based platform for community interactions (e.g., continuous virtual workshops).

Environmental Modelling and Software↗

Behavioral toxicology: Stimulating challenges for a growing discipline

Since the early 1970s, contaminants have been shown to affect virtually every aspect of behavior in terrestrial and aquatic organisms. Behavior inte- grates many cellular processes and is essential to the viability of the organism, the population and the community. Therefore, observations of behavior provide a unique toxicological perspective - one that links the biochemical and ecological conse- quences of environmental contamination.

Environmental Toxicology and Chemistry↗

Ecological interfaces between land and flowing water: Themes and trends in riparian research and management

This paper provides an overview of past, present and future themes for research and management of riparian zones, often relating to papers within this Wetlands Special Feature. Riparian research expanded in the United States around 1980 with themes that recognized (1) damage from excessive livestock, or (2) damage from river damming and diversion, and (3) the beneficial capacity of riparian buffers to intercept and assimilate nutrients and other water contaminants. Research expanded globally in the 1990s, with themes including (4) plant life history requirements and (5) reliance on fluvial geomorphic dynamics that enable riparian rejuvenation. Resource managers recognized that riparian areas provide (6) rich wildlife habitats (7) along with valued ecosystem services, (8) which encouraged conservation and restoration initiatives, (9) including environmental flow regimes. Floodplains are (10) vulnerable to invasive plants and management has included biocontrol such as for Tamarix in the American Southwest. Into the twenty-first century, (11) climate change is advancing, and riparian ecosystems may be especially impacted due to the compound challenges from increasing water demand and declining summer flows. As an emerging opportunity, (12) while reservoirs submerge floodplain vegetation, reservoir deltas may support compensatory riparian wetlands. (13) Studies increasingly utilize remote sensing tools including satellite imagery, LiDAR and unmanned aircraft systems, and (14) the coordination of large data sets invites digital ecology, including artificial intelligence and machine learning. Since riparian zones are centres for human activities, (15) there are opportunities for citizen science, social media and internet applications, which will increasingly democratize riparian research and management.

Wetlands↗

Emergence flux declines disproportionately to larval density along a stream metals gradient

Effects of contaminants on adult aquatic insect emergence are less well understood than effects on insect larvae. We compared responses of larval density and adult emergence along a metal contamination gradient. Nonlinear threshold responses were generally observed for larvae and emergers. Larval densities decreased significantly at low metal concentrations but precipitously at concentrations of metal mixtures above aquatic life criteria (Cumulative Criterion Accumulation Ratio (CCAR) ≥ 1). In contrast, adult emergence declined precipitously at low metal concentrations (CCAR ≤ 1), followed by a modest decline above this threshold. Adult emergence was a more sensitive indicator of the effect of low metals concentrations on aquatic insect communities compared to larvae, presumably because emergence is limited by a combination of larval survival and other factors limiting successful emergence. Thus effects of exposure to larvae are not manifest until later in life (during metamorphosis and emergence). This loss in emergence reduces prey subsidies to riparian communities at concentrations considered safe for aquatic life. Our results also challenge the widely held assumption that adult emergence is a constant proportion of larval densities in all streams.

Environmental Science & Technology↗

Review of and recommendations for monitoring contaminants and their effects in the San Francisco Bay−Delta

Legacy and current-use contaminants enter into and accumulate throughout the San Francisco Bay−Delta (Bay−Delta), and are present at concentrations with known effects on species important to this diverse watershed. There remains major uncertainty and a lack of focused research able to address and provide understanding of effects across multiple biological scales, despite previous and ongoing emphasis on the need for it. These needs are challenging specifically because of the established regulatory programs that often monitor on a chemical- by-chemical basis, or in which decisions are grounded in lethality-based endpoints. To best address issues of contaminants in the Bay−Delta, monitoring efforts should consider effects of environmentally relevant mixtures and sub- lethal impacts that can affect ecosystem health. These efforts need to consider the complex environment in the Bay−Delta including variable abiotic (e.g., temperature, salinity) and biotic (e.g., pathogens) factors. This calls for controlled and focused research, and the development of a multi-disciplinary contaminant monitoring and assessment program that provides information across biological scales. Information gained in this manner will contribute toward evaluating parameters that could alleviate ecologically detrimental outcomes. This review is a result of a Special Symposium convened at the University of California−Davis (UCD) on January 31, 2017 to address critical information needed on how contaminants affect the Bay−Delta. The UCD Symposium focused on new tools and approaches for assessing multiple stressor effects to freshwater and estuarine systems. Our approach is similar to the recently proposed framework laid out by the U.S. Environmental Protection Agency (USEPA) that uses weight of evidence to scale toxicological responses to chemical contaminants in a laboratory, and to guide the conservation of priority species and habitats. As such, we also aimed to recommend multiple endpoints that could be used to promote a multi-disciplinary understanding of contaminant risks in Bay−Delta while supporting management needs.

California↗

U.S. Geological Survey Greater Everglades Science Program: 2002 Biennial Report

Introduction The U.S. Geological Survey (USGS) conducts scientific investigations in south Florida to improve society’s understanding of the environment and assist in the sustainable use, protection, and restoration of the Everglades and other ecosystems within the region. The investigations summarized in this document have been carried out under the Greater Everglades Science Program (previously known as the South Florida Ecosystem Program), which is part of the USGS Place-Based Studies initiative. The USGS Placed-Based Studies initiative is a nationwide program that concentrates on areas with severe environmental problems. Through interdisciplinary investigations the Program provides sound scientific information on which to base informed resource management decisions. Individuals from all the USGS programs (hydrology, geology, biology, mapping) work together with other scientists to cover the diverse scientific disciplines involved in this complex and challenging task. The Greater Everglades Science Program began in 1995 as one of the initial Place-Based Studies programs and serves as a model for similar future collaborative studies. Placed-Based Studies are also being conducted in the San Francisco Bay area, Chesapeake Bay, the Platte River, Greater Yellowstone, Salton Sea, and the Mojave Desert. The South Florida Ecosystem Program is part of a coordinated federal effort, under the South Florida Ecosystem Restoration Task Force. The Task Force was started in 1993, through interagency agreement, to coordinate the efforts of the agencies within six federal departments. In 1996, statutory authority formalized the Task Force and expanded it to include tribal, state, and local governments. The Task Force conducts its activities through the South Florida Ecosystem Working Group and teams, such as the Science Coordination Team. A Science Plan and Integrated Financial Plans are established to focus efforts and prevent duplicative efforts by the agencies.

Open-File Report↗

Sediment source fingerprinting as an aid to catchment management: A review of the current state of knowledge and a methodological decision-tree for end-users

The growing awareness of the environmental significance of fine-grained sediment fluxes through catchment systems continues to underscore the need for reliable information on the principal sources of this material. Source estimates are difficult to obtain using traditional monitoring techniques, but sediment source fingerprinting or tracing procedures, have emerged as a potentially valuable alternative. Despite the rapidly increasing numbers of studies reporting the use of sediment source fingerprinting, several key challenges and uncertainties continue to hamper consensus among the international scientific community on key components of the existing methodological procedures. Accordingly, this contribution reviews and presents recent developments for several key aspects of fingerprinting, namely: sediment source classification, catchment source and target sediment sampling, tracer selection, grain size issues, tracer conservatism, source apportionment modelling, and assessment of source predictions using artificial mixtures. Finally, a decision-tree representing the current state of knowledge is presented, to guide end-users in applying the fingerprinting approach.

Journal of Environmental Management↗

GRACEnet: addressing policy needs through coordinated cross-location research

GRACEnet (Greenhouse gas Reduction through Agricultural Carbon Enhancement network) was conceived to build upon ongoing USDA Agricultural Research Service (ARS) research to improve soil productivity, while addressing the challenges and opportunities of interest in C sequestration from a climate change perspective. The vision for GRACEnet was and remains: Knowledge and information used to implement scientifically based agricultural management practices from the field to national policy scales on C sequestration, greenhouse gas (GHG) emissions, and environmental benefits. The national focus of GRACEnet uses a standardized approach by ARS laboratories and university and land manager (e.g. farmer and rancher) cooperators to assess C sequestration and GHG emission from different crop and grassland systems. Since 2002, GRACEnet has significantly expanded GHG mitigation science and delivered usable information to agricultural research and policy organizations. Recent developments suggest GRACEnet will have international impact by contributing leadership and technical guidance for the Global Research Alliance on Agricultural Greenhouse Gases.

Book chapter↗