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U.S. Geological Survey—Energy and wildlife research annual report for 2017

Introduction Terrestrial and aquatic ecosystems provide valuable services to humans and are a source of clean water, energy, raw materials, and productive soils. The Nation’s food supply is more secure because of wildlife. For example, native pollinators enhance agricultural crops, and insect-eating bats provide pest control services worth billions of dollars to farmers annually. Fish and wildlife are also vital to a vibrant outdoor recreation and tourism industry. Recreational activities, such as hunting, shooting, boating, and angling, generated \$1.1 billion in excise taxes paid to State wildlife agencies in 2017. National parks, wildlife refuges, and monuments accounted for $35 billion in economic output and 318,000 jobs nationwide in 2016. Additional economic benefits are generated from the use and enjoyment of wildlife in State-owned lands and waters. Although the United States is rich in natural resources, human activity continues to place new pressures on fish and wildlife and the habitats they rely on. The United States became the world’s top producer of petroleum and natural gas products in 2012, surpassing Russia’s natural gas production levels in 2009 and Saudi Arabia’s petroleum production in 2013. The U.S. Energy Information Administration projects that the demand for liquid fuel, natural gas, and renewable energy will show strong growth in the next 20 years. Wind energy has demonstrated consistent growth since 2007 with now more than 53,000 wind turbines contributing to power grids in 41 States, Guam, and Puerto Rico. Solar energy has seen rapid growth since 2013 and made up nearly one-third of the total electricity generation additions in 2016. Yet as our Nation works to advance energy security and sustain wildlife, some conflicts have surfaced. Impacts of an expanding energy infrastructure include fragmentation and loss of habitat as well as mortality of birds, bats, fish, and other animals from interactions with energy generation facilities. Because energy development can often occur in wildlife habitats, ecological science can help guide project siting and operational decisions to areas that present the lowest risk to wildlife and energy developers. To address these challenges and make the most of new opportunities, the U.S. Geological Survey is producing innovative science to develop workable solutions that can help sustain wildlife and the habitat they rely upon, while allowing informed development.

Circular↗

Fisheries research and monitoring activities of the Lake Erie Biological Station, 2014

In 2014, the USGS LEBS successfully completed large vessel surveys in all three of Lake Erie’s basins. Lake Erie Biological Station’s primary vessel surveys included the Western Basin Forage Fish Assessment and East Harbor Forage Fish Assessment as well as contributing to the cooperative multi-agency Central Basin Hydroacoustics Assessment, the Eastern Basin Coldwater Community Assessment, and LTLA (see FTG, CWTG, and FTG reports, respectively). Results from the surveys contribute to Lake Erie Committee Task Group data needs and analyses of trends in Lake Erie’s fish communities. The cruise survey schedule in 2014 was greatly increased by LEBS’s participation in the Lake Erie CSMI, which consisted of up-to two weeks of additional sampling per month from April to October. CSMI is a bi-national effort that occurs at Lake Erie every five years with the purpose of addressing data and knowledge gaps necessary to management agencies and the Lake Erie LaMP. LEBS deepwater science capabilities also provided a platform for data collection by Lake Erie investigators from multiple agencies and universities including: the USGS GLSC, ODW, KSU, OSU, UM, PU, UT, and the USNRL. Samples from this survey are being processed and a separate report of the findings will be made available in a separate document. Our 2014 vessel operations were initiated in mid-April, as soon after ice-out as possible, and continued into early December. During this time, crews of the R/V Muskie and R/V Bowfin deployed 196 bottom trawls covering 48.5 km of lake-bottom, nearly 6 km of gillnet, collected data from 60 hydroacoustics transects, 285 lower trophic (i.e., zooplankton and benthos) samples, and 330 water quality measures (e.g., temperature profiles, water samples). Thus, 2014 was an intensive year of field activity. Our June and September bottom trawl surveys in the Western Basin were numerically dominated by Emerald Shiner, White Perch, and Yellow Perch; however, Freshwater Drum were dominant by biomass. Age-2+ Yellow Perch and White Perch diets from our western basin trawl had highest occurrences of benthic invertebrates in spring and fall. Hexagenia spp. accounted for >25% of Yellow Perch and White Perch diet composition (dry weight) in spring. We conducted an analysis using data from the past 6 years of our East Harbor survey to determine to what degree our new research vessel and trawl is affecting our ability to detect trends across the 50+ year time series. We also evaluated trends in water temperatue, dissolved oxygen, secchi depth and total Phosphorus from our LTLA sites near Vermilion, Ohio. Within the following report sections, we describe specific results from our primary surveys conducted in 2014.

Report↗

Hydrocarbon geochemistry of cold seeps in the Monterey Bay National Marine Sanctuary

Samples from four geographically and tectonically discrete cold seeps named Clam Flat, Clamfield, Horseshoe Scarp South, and Tubeworm City, within the Monterey Bay National Marine Sanctuary were analyzed for their hydrocarbon content. The sediment contains gaseous hydrocarbons and CO2, as well as high molecular weight aliphatic and aromatic hydrocarbons with various combinations of thermogenic and biogenic contributions from petroleum, marine, and terrigenous sources. Of particular interest is the cold seep site at Clamfield which is characterized by the presence of thermogenic hydrocarbons including oil that can likely be correlated with oil-saturated strata at Majors Creek near Davenport, CA, USA. At Clam Flat, the evidence for thermogenic hydrocarbons is equivocal. At Horseshoe Scarp South and Tubeworm City, hydrocarbon gases, mainly methane, are likely microbial in origin. These varied sources of hydrocarbon gases highlight the diverse chemical systems that appear at cold seep communities. ?? 2002 Elsevier Science B.V. All rights reserved.

Marine Geology↗

Landsat Data Continuity Mission (LDCM) space to ground mission data architecture

The Landsat Data Continuity Mission (LDCM) is a scientific endeavor to extend the longest continuous multi-spectral imaging record of Earth's land surface. The observatory consists of a spacecraft bus integrated with two imaging instruments; the Operational Land Imager (OLI), built by Ball Aerospace & Technologies Corporation in Boulder, Colorado, and the Thermal Infrared Sensor (TIRS), an in-house instrument built at the Goddard Space Flight Center (GSFC). Both instruments are integrated aboard a fine-pointing, fully redundant, spacecraft bus built by Orbital Sciences Corporation, Gilbert, Arizona. The mission is scheduled for launch in January 2013. This paper will describe the innovative end-to-end approach for efficiently managing high volumes of simultaneous realtime and playback of image and ancillary data from the instruments to the reception at the United States Geological Survey's (USGS) Landsat Ground Network (LGN) and International Cooperator (IC) ground stations. The core enabling capability lies within the spacecraft Command and Data Handling (C&DH) system and Radio Frequency (RF) communications system implementation. Each of these systems uniquely contribute to the efficient processing of high speed image data (up to 265Mbps) from each instrument, and provide virtually error free data delivery to the ground. Onboard methods include a combination of lossless data compression, Consultative Committee for Space Data Systems (CCSDS) data formatting, a file-based/managed Solid State Recorder (SSR), and Low Density Parity Check (LDPC) forward error correction. The 440 Mbps wideband X-Band downlink uses Class 1 CCSDS File Delivery Protocol (CFDP), and an earth coverage antenna to deliver an average of 400 scenes per day to a combination of LGN and IC ground stations. This paper will also describe the integrated capabilities and processes at the LGN ground stations for data reception using adaptive filtering, and the mission operations approach fro- the LDCM Mission Operations Center (MOC) to perform the CFDP accounting, file retransmissions, and management of the autonomous features of the SSR.

Conference Paper↗

Quantifying long-term population growth rates of threatened bull trout: challenges, lessons learned, and opportunities

Temporal symmetry models (TSM) represent advances in the analytical application of mark–recapture data to population status assessments. For a population of char, we employed 10 years of active and passive mark–recapture data to quantify population growth rates using different data sources and analytical approaches. Estimates of adult population growth rate were 1.01 (95% confidence interval = 0.84–1.20) using a temporal symmetry model ( λ TSM ), 0.96 (0.68–1.34) based on logistic regressions of annual snorkel data ( λ A ), and 0.92 (0.77–1.11) from redd counts ( λ R ). Top-performing TSMs included an increasing time trend in recruitment ( f ) and changes in capture probability ( p ). There was only a 1% chance the population decreased ≥50%, and a 10% chance it decreased ≥30% ( λ MCMC ; based on Bayesian Markov chain Monte Carlo procedure). Size structure was stable; however, the adult population was dominated by small adults, and over the study period there was a decline in the contribution of large adults to total biomass. Juvenile condition decreased with increasing adult densities. Utilization of these different information sources provided a robust weight-of-evidence approach to identifying population status and potential mechanisms driving changes in population growth rates.

Oregon↗

Methanogens and their syntrophic partners dominate zones of enhanced magnetic susceptibility at a petroleum contaminated site

Geophysical investigations documenting enhanced magnetic susceptibility (MS) within the water table fluctuation zone at hydrocarbon contaminated sites suggest that MS can be used as a proxy for investigating microbial mediated iron reduction during intrinsic bioremediation. Here, we investigated the microbial community composition over a 5-year period at a hydrocarbon-contaminated site that exhibited transient elevated MS responses. Our objective was to determine the key microbial populations in zones of elevated MS. We retrieved sediment cores from the petroleum-contaminated site near Bemidji, MN, United States, and performed MS measurements on these cores. We also characterized the microbial community composition by high-throughput 16S rRNA gene amplicon sequencing from samples collected along the complete core length. Our spatial and temporal analysis revealed that the microbial community composition was generally stable throughout the period of investigation. In addition, we observed distinct vertical redox zonations extending from the upper vadose zone into the saturated zone. These distinct redox zonations were concomitant with the dominant microbial metabolic processes as follows: (1) the upper vadose zone was dominated by aerobic microbial populations; (2) the lower vadose zone was dominated by methanotrophic populations, iron reducers and iron oxidizers; (3) the smear zone was dominated by iron reducers; and (4) the free product zone was dominated by syntrophic and methanogenic populations. Although the common notion is that high MS values are caused by high magnetite concentrations that can be biotically formed through the activities of iron-reducing bacteria, here we show that the highest magnetic susceptibilities were measured in the free-phase petroleum zone, where a methanogenic community was predominant. This field study may contribute to the emerging knowledge that methanogens can switch their metabolism from methanogenesis to iron reduction with associated magnetite precipitation in hydrocarbon contaminated sediments. Thus, geophysical methods such as MS may help to identify zones where iron cycling/reduction by methanogens is occurring.

Frontiers in Earth Science↗

Science plan for improving three-dimensional seismic velocity models in the San Francisco Bay region, 2019–24

This five-year science plan outlines short-term and long-term goals for improving three-dimensional seismic velocity models in the greater San Francisco Bay region as well as how to foster a community effort in reaching those goals. The short-term goals focus on improving the current U.S. Geological Survey San Francisco Bay region geologic and seismic velocity model using existing data. The long-term goals focus on acquiring new data and leveraging better analytic tools to improve the model and characterize the uncertainty. The plan describes opportunities for contributions by members of the community to develop these seismic velocity models, provides current and potential users with general information on where efforts will likely be focused to improve these models and how new versions of the models will be released, and outlines funding needs and obstacles for improving and maintaining such models. Several aspects of this plan, including how to foster a community effort, are independent of the geographic region and apply to other similar efforts.

California↗

The integrated monarch monitoring program: From design to implementation

Steep declines in North American monarch butterfly ( Danaus plexippus ) populations have prompted continent-wide conservation efforts. While monarch monitoring efforts have existed for years, we lack a comprehensive approach to monitoring population vital rates integrated with habitat quality to inform adaptive management and effective conservation strategies. Building a geographically and ecologically representative dataset of monarchs and their habitat will improve these efforts. These data will help track long-term changes in the distribution and abundance of monarchs and their habitats, refine population and habitat models, and illuminate how conservation activities affect monarchs and their habitats. The Monarch Conservation Science Partnership developed the Integrated Monarch Monitoring Program (IMMP) to profile breeding habitats and their use by monarchs in North America. A spatially balanced random sampling framework guides site selection, while also allowing opportunistic inclusion of sites chosen by participants, such as conservation areas. The IMMP weaves new protocols together with those from existing monitoring programs to improve data compatibility for assessing milkweed (Asclepias spp.) density, nectar resources, monarch reproduction and survival, and adult monarch habitat use. Participants may select a protocol subset according to interests or local monitoring objectives, thereby maximizing contributions. Conservation partners, including public and private land managers, academic researchers, and citizen scientists contribute data to a national dataset available for analyses at multiple scales. We describe the program and its development, implementation elements that make the program robust and feasible, participation to date, and how IMMP data can advance research and conservation for monarchs, pollinators, and their habitats.

North America↗

Understanding arid environments using fossil rodent middens

American rodent middens have made a more dramatic contribution to understanding past environments and the development of ecological theory than Australian rodent middens. This relates to differences in the natural environment, the landscape histories, the scale and scientific approaches of the researchers. The comparison demonstrates: the power of synoptic perspectives; the value of thorough macrofossil identification in midden analysis and its potential advance in Australia where pollen has dominated analyses, the value of herbaria and reference collections; the potential of environmental databases; the importance of scientific history and 'critical research mass' and; finally, the opportunistic nature of palaeoecological research. ?? 2002 Elsevier Science Ltd.

Journal of Arid Environments↗

Interannual variation in climate contributes to contingency in post-fire restoration outcomes in seeded sagebrush steppe

Interannual variation, especially weather, is an often-cited reason for restoration “failures”; yet its importance is difficult to experimentally isolate across broad spatiotemporal extents, due to correlations between weather and site characteristics. We examined post-fire treatments within sagebrush-steppe ecosystems to ask: (1) Is weather following seeding efforts a primary reason why restoration outcomes depart from predictions? and (2) Does the management-relevance of weather differ across space and with time since treatment? Our analysis quantified range-wide patterns of sagebrush ( Artemisia spp.) recovery, by integrating long-term records of restoration and annual vegetation cover estimates from satellite imagery following thousands of post-fire seeding treatments from 1984 to 2005. Across the Great Basin, sagebrush growth increased in wetter, cooler springs; however, the importance of spring weather varied with sites' long-term climates, suggesting differing ecophysiological limitations across sagebrush's range. Incorporation of spring weather, including from the “planting year,” improved predictions of sagebrush recovery, but these advances were small compared to contributions of time-invariant site characteristics. Given extreme weather conditions threatening this ecosystem, explicit consideration of weather could improve the allocation of management resources, such as by identifying areas requiring repeated treatments; but improved forecasts of shifting mean conditions with climate change may more significantly aid the prediction of sagebrush recovery.

California, Colorado, Idaho, Nevada, Oregon, Utah,↗

A genetic signature of the evolution of loss of flight in the Galapagos cormorant

INTRODUCTION Changes in the size and proportion of limbs and other structures have played a key role in the evolution of species. One common class of limb modification is recurrent wing reduction and loss of flight in birds. Indeed, Darwin used the occurrence of flightless birds as an argument in favor of his theory of natural selection. Loss of flight has evolved repeatedly and is found among 26 families of birds in 17 different orders. Despite the frequency of these modifications, we have a limited understanding of their underpinnings at the genetic and molecular levels. RATIONALE To better understand the evolution of changes in limb size, we studied a classic case of recent loss of flight in the Galapagos cormorant ( Phalacrocorax harrisi ). Cormorants are large water birds that live in coastal areas or near lakes, and P. harrisi is the only flightless cormorant among approximately 40 extant species. The entire population is distributed along the coastlines of Isabela and Fernandina islands in the Galapagos archipelago. P. harrisi has a pair of short wings, which are smaller than those of any other cormorant. The extreme reduction of the wings and pectoral skeleton observed in P. harrisi is an attractive model for studying the evolution of loss of flight because it occurred very recently; phylogenetic evidence suggests that P. harrisi diverged from its flighted relatives within the past 2 million years. We developed a comparative and predictive genomics approach that uses the genome sequences of P. harrisi and its flighted relatives to find candidate genetic variants that likely contributed to the evolution of loss of flight. RESULTS We sequenced and de novo assembled the whole genomes of P. harrisi and three closely related flighted cormorant species. We identified thousands of coding variants exclusive to P. harrisi and classified them according to their probability of altering protein function based on conservation. Variants most likely to alter protein function were significantly enriched in genes mutated in human skeletal ciliopathies, including Ofd1 , Evc , Wdr34 , and Ift122 . We carried out experiments in Caenorhabditis elegans to confirm that a missense variant present in the Galapagos cormorant IFT122 protein is sufficient to affect ciliary function. The primary cilium is essential for Hedgehog (Hh) signaling in vertebrates, and individuals affected by ciliopathies have small limbs and ribcages, mirroring the phenotype of P. harrisi . We also identified a 4–amino acid deletion in the regulatory domain of Cux1 , a highly conserved transcription factor that has been experimentally shown to regulate limb growth in chicken. The four missing amino acids are perfectly conserved in all birds and mammals sequenced to date. We tested the consequences of this deletion in a chondrogenic cell line and showed that it impairs the ability of CUX1 to transcriptionally up-regulate cilia-related genes (some of which contain function-altering variants in P. harrisi ) and to promote chondrogenic differentiation. Finally, we show that positive selection may have played a role in the fixation of the variants associated with loss of flight in P. harrisi . CONCLUSION Our results indicate that the combined effect of variants in genes necessary for the correct transcriptional regulation and function of the primary cilium likely contributed to the evolution of highly reduced wings and other skeletal adaptations associated with loss of flight in P. harrisi . Our approach may be generally useful for identification of variants underlying evolutionary novelty from genomes of closely related species.

Science↗

2016 one-year seismic hazard forecast for the Central and Eastern United States from induced and natural earthquakes

The U.S. Geological Survey (USGS) has produced a 1-year seismic hazard forecast for 2016 for the Central and Eastern United States (CEUS) that includes contributions from both induced and natural earthquakes. The model assumes that earthquake rates calculated from several different time windows will remain relatively stationary and can be used to forecast earthquake hazard and damage intensity for the year 2016. This assessment is the first step in developing an operational earthquake forecast for the CEUS, and the analysis could be revised with updated seismicity and model parameters. Consensus input models consider alternative earthquake catalog durations, smoothing parameters, maximum magnitudes, and ground motion estimates, and represent uncertainties in earthquake occurrence and diversity of opinion in the science community. Ground shaking seismic hazard for 1-percent probability of exceedance in 1 year reaches 0.6 g (as a fraction of standard gravity [g]) in northern Oklahoma and southern Kansas, and about 0.2 g in the Raton Basin of Colorado and New Mexico, in central Arkansas, and in north-central Texas near Dallas. Near some areas of active induced earthquakes, hazard is higher than in the 2014 USGS National Seismic Hazard Model (NHSM) by more than a factor of 3; the 2014 NHSM did not consider induced earthquakes. In some areas, previously observed induced earthquakes have stopped, so the seismic hazard reverts back to the 2014 NSHM. Increased seismic activity, whether defined as induced or natural, produces high hazard. Conversion of ground shaking to seismic intensity indicates that some places in Oklahoma, Kansas, Colorado, New Mexico, Texas, and Arkansas may experience damage if the induced seismicity continues unabated. The chance of having Modified Mercalli Intensity (MMI) VI or greater (damaging earthquake shaking) is 5–12 percent per year in north-central Oklahoma and southern Kansas, similar to the chance of damage caused by natural earthquakes at sites in parts of California.

Open-File Report↗

EAARL-B coastal topography: eastern New Jersey, Hurricane Sandy, 2012: first surface

These remotely sensed, geographically referenced elevation measurements of lidar-derived first-surface (FS) topography datasets were produced by the U.S. Geological Survey (USGS), St. Petersburg Coastal and Marine Science Center, St. Petersburg, Florida. This project provides highly detailed and accurate datasets for a portion of the New Jersey coastline beachface, acquired pre-Hurricane Sandy on October 26, and post-Hurricane Sandy on November 1 and November 5, 2012. The datasets are made available for use as a management tool to research scientists and natural-resource managers. An innovative airborne lidar system, known as the second-generation Experimental Advanced Airborne Research Lidar (EAARL-B), was used during data acquisition. The EAARL-B system is a raster-scanning, waveform-resolving, green-wavelength (532-nm) lidar designed to map nearshore bathymetry, topography, and vegetation structure simultaneously. The EAARL-B sensor suite includes the raster-scanning, water-penetrating full-waveform adaptive lidar, down-looking red-green-blue (RGB) and infrared (IR) digital cameras, two precision dual-frequency kinematic carrier-phase GPS receivers, and an integrated miniature digital inertial measurement unit, which provide for sub-meter georeferencing of each laser sample. The nominal EAARL-B platform is a twin-engine Cessna 310 aircraft, but the instrument may be deployed on a range of light aircraft. A single pilot, a lidar operator, and a data analyst constitute the crew for most survey operations. This sensor has the potential to make significant contributions in measuring sub-aerial and submarine coastal topography within cross-environmental surveys. Elevation measurements were collected over the survey area using the EAARL-B system. The resulting data were then processed using the Airborne Lidar Processing System (ALPS), a custom-built processing system developed in a NASA-USGS collaboration. ALPS supports the exploration and processing of lidar data in an interactive or batch mode. Modules for presurvey flight-line definition, flight-path plotting, lidar raster and waveform investigation, and digital camera image playback have been developed. Processing algorithms have been developed to extract the range to the first and last significant return within each waveform. ALPS is used routinely to create maps that represent submerged or sub-aerial topography. Specialized filtering algorithms have been implemented to determine the "bare earth" under vegetation from a point cloud of last return elevations. For more information about similar projects, please visit the Lidar for Science and Resource Management Web site.

New Jersey↗

Resilience concepts in psychiatry demonstrated with bipolar disorder

Background The term resilience describes stress–response patterns of subjects across scientific disciplines. In ecology, advances have been made to clearly distinguish resilience definitions based on underlying mechanistic assumptions. Engineering resilience (rebound) is used for describing the ability of subjects to recover from adverse conditions (disturbances), and is the rate of recovery. In contrast, the ecological resilience definition considers a systemic change: when complex systems (including humans) respond to disturbances by reorganizing into a new regime (stable state) where structural and functional aspects have fundamentally changed relative to the prior regime. In this context, resilience is an emergent property of complex systems. We argue that both resilience definitions and uses are appropriate in psychology and psychiatry, but although the differences are subtle, the implications and uses are profoundly different. Methods We borrow from the field of ecology to discuss resilience concepts in the mental health sciences. Results In psychology and psychiatry, the prevailing view of resilience is adaptation to, coping with, and recovery (engineering resilience) from adverse social and environmental conditions. Ecological resilience may be useful for describing vulnerability, onset, and the irreversibility patterns of mental disorders. We discuss this in the context of bipolar disorder. Conclusion Rebound, adaptation, and coping are processes that are subsumed within the broader systemic organization of humans, from which ecological resilience emanates. Discerning resilience concepts in psychology and psychiatry has potential for a mechanistically appropriate contextualization of mental disorders at large. This might contribute to a refinement of theory and contextualize clinical practice within the broader systemic functioning of mental illnesses.

International Journal of Bipolar Disorders↗

EAARL-B coastal topography: Fire Island, New York, pre-Hurricane Sandy, 2012: seamless (bare earth and submerged)

These remotely sensed, geographically referenced elevation measurements of lidar-derived seamless (bare-earth and submerged) topography datasets were produced by the U.S. Geological Survey (USGS), St. Petersburg Coastal and Marine Science Center, St. Petersburg, Florida. This project provides highly detailed and accurate datasets for part of Fire Island, New York, acquired pre-Hurricane Sandy on October 27, 2012. The datasets are made available for use as a management tool to research scientists and natural-resource managers. An innovative airborne lidar, known as the second-generation Experimental Advanced Airborne Research Lidar (EAARL-B), was used during data acquisition. The EAARL-B system is a raster-scanning, waveform-resolving, green-wavelength (532-nm) lidar designed to map near-shore bathymetry, topography, and vegetation structure simultaneously. The EAARL-B sensor suite includes the raster-scanning, water-penetrating full-waveform adaptive lidar, down-looking red-green-blue (RGB) and infrared (IR) digital cameras, two precision dual-frequency kinematic carrier-phase GPS receivers, and an integrated miniature digital inertial measurement unit, which provide for sub-meter georeferencing of each laser sample. The nominal EAARL-B platform is a twin-engine Cessna 310 aircraft, but the instrument may be deployed on a range of light aircraft. A single pilot, a lidar operator, and a data analyst constitute the crew for most survey operations. This sensor has the potential to make significant contributions in measuring sub-aerial and submarine coastal topography within cross-environmental surveys. Elevation measurements were collected over the survey area using the EAARL-B system. The resulting data were then processed using the Airborne Lidar Processing System (ALPS), a custom-built processing system developed originally in a NASA-USGS collaboration. The exploration and processing of lidar data in an interactive or batch mode is supported using ALPS. Modules for presurvey flight-line definition, flight-path plotting, lidar raster and waveform investigation, and digital camera image playback have been developed. Processing algorithms have been developed to extract the range to the first and last significant return within each waveform. The Airborne Lidar Processing System (ALPS) is used routinely to create maps that represent submerged or sub-aerial topography. Specialized filtering algorithms have been implemented to determine the "bare earth" under vegetation from a point cloud of last return elevations. For more information about similar projects, please visit the Lidar for Science and Resource Management Web site.

New York↗

EAARL Coastal Topography-Maryland and Delaware, Post-Nor'Ida, 2009

These remotely sensed, geographically referenced elevation measurements of lidar-derived bare-earth (BE) and first-surface (FS) topography datasets were produced by the U.S. Geological Survey (USGS), St. Petersburg Coastal and Marine Science Center, St. Petersburg, FL. This project provides highly detailed and accurate datasets of a portion of the eastern Maryland and Delaware coastline beachface, acquired post-Nor'Ida (November 2009 nor'easter) on November 28 and 30, 2009. The datasets are made available for use as a management tool to research scientists and natural-resource managers. An innovative airborne lidar instrument originally developed at the NASA Wallops Flight Facility, and known as the Experimental Advanced Airborne Research Lidar (EAARL), was used during data acquisition. The EAARL system is a raster-scanning, waveform-resolving, green-wavelength (532-nanometer) lidar designed to map near-shore bathymetry, topography, and vegetation structure simultaneously. The EAARL sensor suite includes the raster-scanning, water-penetrating full-waveform adaptive lidar, a down-looking red-green-blue (RGB) digital camera, a high-resolution multispectral color-infrared (CIR) camera, two precision dual-frequency kinematic carrier-phase GPS receivers, and an integrated miniature digital inertial measurement unit, which provide for sub-meter georeferencing of each laser sample. The nominal EAARL platform is a twin-engine aircraft, but the instrument was deployed on a Pilatus PC-6. A single pilot, a lidar operator, and a data analyst constitute the crew for most survey operations. This sensor has the potential to make significant contributions in measuring sub-aerial and submarine coastal topography within cross-environmental surveys. Elevation measurements were collected over the survey area using the EAARL system, and the resulting data were then processed using the Airborne Lidar Processing System (ALPS), a custom-built processing system developed in a NASA-USGS collaboration. ALPS supports the exploration and processing of lidar data in an interactive or batch mode. Modules for presurvey flight-line definition, flight-path plotting, lidar raster and waveform investigation, and digital camera image playback have been developed. Processing algorithms have been developed to extract the range to the first and last significant return within each waveform. ALPS is used routinely to create maps that represent submerged or sub-aerial topography. Specialized filtering algorithms have been implemented to determine the 'bare earth' under vegetation from a point cloud of last return elevations. For more information about similar projects, please visit the Decision Support for Coastal Science and Management website.

Data Series↗

Salinity trends in a groundwater system supplemented by 50 years of imported Colorado River water

The Indio subbasin of the Coachella Valley is a desert area of southern California where a growing population depends primarily on groundwater for drinking and agricultural uses. The aquifer system has been supplemented with Colorado River water through managed recharge and widespread irrigation since the mid-20th century. We use a combination of geochemical modeling and trend analysis to identify changes in total dissolved solids through time, elucidate the sources of dissolved solids, and quantify the extent of contributions from those sources throughout the Indio subbasin. We conclude that recharged Colorado River water is the primary source and driver of increasing salinity, particularly in areas immediately downgradient from the recharge locations and in the eastern part of the subbasin away from the recharge ponds due to irrigation using imported water. Other contributions of dissolved solids to groundwater resources include geothermal waters, wastewater effluent, and agricultural return flow, although their effects are more localized. This study presents a broadly applicable framework for identifying sources of dissolved solids in groundwater wells and salinity trends at a regional scale in a large data set.

California↗

Rapid observations of ocean dynamics and stratification along a steep island coast during Hurricane María

Hurricanes are extreme storms that affect coastal communities, but the linkages between hurricane forcing and ocean dynamics remain poorly understood. Here, we present full water column observations at unprecedented resolution from the southwest Puerto Rico insular shelf and slope during Hurricane María, representing a rare set of high-frequency, subsurface, oceanographic observations collected along an island margin during a hurricane. The shelf geometry and orientation relative to the storm acted to stabilize and strengthen stratification. This maintained elevated sea-surface temperatures (SSTs) throughout the storm and led to an estimated 65% greater potential hurricane intensity contribution at this site before eye passage. Coastal cooling did not occur until 11 hours after the eye passage. Our findings present a new framework for how hurricane interaction with insular island margins may generate baroclinic processes that maintain elevated SSTs, thus potentially providing increased energy for the storm.

southwestern Puerto Rico↗