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At least 613 records · Page 34Linked to original sources

Approaches in highly parameterized inversion - PEST++, a Parameter ESTimation code optimized for large environmental models

An object-oriented parameter estimation code was developed to incorporate benefits of object-oriented programming techniques for solving large parameter estimation modeling problems. The code is written in C++ and is a formulation and expansion of the algorithms included in PEST, a widely used parameter estimation code written in Fortran. The new code is called PEST++ and is designed to lower the barriers of entry for users and developers while providing efficient algorithms that can accommodate large, highly parameterized problems. This effort has focused on (1) implementing the most popular features of PEST in a fashion that is easy for novice or experienced modelers to use and (2) creating a software design that is easy to extend; that is, this effort provides a documented object-oriented framework designed from the ground up to be modular and extensible. In addition, all PEST++ source code and its associated libraries, as well as the general run manager source code, have been integrated in the Microsoft Visual Studio® 2010 integrated development environment. The PEST++ code is designed to provide a foundation for an open-source development environment capable of producing robust and efficient parameter estimation tools for the environmental modeling community into the future.

Techniques and Methods↗

Approaches in highly parameterized inversion - GENIE, a general model-independent TCP/IP run manager

GENIE is a model-independent suite of programs that can be used to generally distribute, manage, and execute multiple model runs via the TCP/IP infrastructure. The suite consists of a file distribution interface, a run manage, a run executer, and a routine that can be compiled as part of a program and used to exchange model runs with the run manager. Because communication is via a standard protocol (TCP/IP), any computer connected to the Internet can serve in any of the capacities offered by this suite. Model independence is consistent with the existing template and instruction file protocols of the widely used PEST parameter estimation program. This report describes (1) the problem addressed; (2) the approach used by GENIE to queue, distribute, and retrieve model runs; and (3) user instructions, classes, and functions developed. It also includes (4) an example to illustrate the linking of GENIE with Parallel PEST using the interface routine.

Techniques and Methods↗

Approaches in highly parameterized inversion: TSPROC, a general time-series processor to assist in model calibration and result summarization

The TSPROC ( T ime S eries PROC essor) computer software uses a simple scripting language to process and analyze time series. It was developed primarily to assist in the calibration of environmental models. The software is designed to perform calculations on time-series data commonly associated with surface-water models, including calculation of flow volumes, transformation by means of basic arithmetic operations, and generation of seasonal and annual statistics and hydrologic indices. TSPROC can also be used to generate some of the key input files required to perform parameter optimization by means of the PEST ( P arameter EST imation) computer software. Through the use of TSPROC, the objective function for use in the model-calibration process can be focused on specific components of a hydrograph.

Techniques and Methods↗

Approaches in highly parameterized inversion-PESTCommander, a graphical user interface for file and run management across networks

Models of environmental systems have become increasingly complex, incorporating increasingly large numbers of parameters in an effort to represent physical processes on a scale approaching that at which they occur in nature. Consequently, the inverse problem of parameter estimation (specifically, model calibration) and subsequent uncertainty analysis have become increasingly computation-intensive endeavors. Fortunately, advances in computing have made computational power equivalent to that of dozens to hundreds of desktop computers accessible through a variety of alternate means: modelers have various possibilities, ranging from traditional Local Area Networks (LANs) to cloud computing. Commonly used parameter estimation software is well suited to take advantage of the availability of such increased computing power. Unfortunately, logistical issues become increasingly important as an increasing number and variety of computers are brought to bear on the inverse problem. To facilitate efficient access to disparate computer resources, the PESTCommander program documented herein has been developed to provide a Graphical User Interface (GUI) that facilitates the management of model files ("file management") and remote launching and termination of "slave" computers across a distributed network of computers ("run management"). In version 1.0 described here, PESTCommander can access and ascertain resources across traditional Windows LANs: however, the architecture of PESTCommander has been developed with the intent that future releases will be able to access computing resources (1) via trusted domains established in Wide Area Networks (WANs) in multiple remote locations and (2) via heterogeneous networks of Windows- and Unix-based operating systems. The design of PESTCommander also makes it suitable for extension to other computational resources, such as those that are available via cloud computing. Version 1.0 of PESTCommander was developed primarily to work with the parameter estimation software PEST; the discussion presented in this report focuses on the use of the PESTCommander together with Parallel PEST. However, PESTCommander can be used with a wide variety of programs and models that require management, distribution, and cleanup of files before or after model execution. In addition to its use with the Parallel PEST program suite, discussion is also included in this report regarding the use of PESTCommander with the Global Run Manager GENIE, which was developed simultaneously with PESTCommander.

Techniques and Methods↗

Efficient processing of two-dimensional arrays with C or C++

Because fast and efficient serial processing of raster-graphic images and other two-dimensional arrays is a requirement in land-change modeling and other applications, the effects of 10 factors on the runtimes for processing two-dimensional arrays with C and C++ are evaluated in a comparative factorial study. This study’s factors include the choice among three C or C++ source-code techniques for array processing; the choice of Microsoft Windows 7 or a Linux operating system; the choice of 4-byte or 8-byte array elements and indexes; and the choice of 32-bit or 64-bit memory addressing. This study demonstrates how programmer choices can reduce runtimes by 75 percent or more, even after compiler optimizations. Ten points of practical advice for faster processing of two-dimensional arrays are offered to C and C++ programmers. Further study and the development of a C and C++ software test suite are recommended. Key words : array processing, C, C++, compiler, computational speed, land-change modeling, raster-graphic image, two-dimensional array, software efficiency

Techniques and Methods↗

Fracture characterization and fracture-permeability estimation at the underground research laboratory in southeastern Manitoba, Canada

Various conventional geophysical well logs were obtained in conjunction with acoustic tube-wave amplitude and experimental heat-pulse flowmeter measurements in two deep boreholes in granitic rocks on the Canadian shield in southeastern Manitoba. The objective of this study is the development of measurement techniques and data processing methods for characterization of rock volumes that might be suitable for hosting a nuclear waste repository. One borehole, WRA1, intersected several major fracture zones, and was suitable for testing quantitative permeability estimation methods. The other borehole, URL13, appeared to intersect almost no permeable fractures; it was suitable for testing methods for the characterization of rocks of very small permeability and uniform thermo-mechanical properties in a potential repository horizon. Epithermal neutron , acoustic transit time, and single-point resistance logs provided useful, qualitative indications of fractures in the extensively fractured borehole, WRA1. A single-point log indicates both weathering and the degree of opening of a fracture-borehole intersection. All logs indicate the large intervals of mechanically and geochemically uniform, unfractured granite below depths of 300 m in the relatively unfractured borehole, URL13. Some indications of minor fracturing were identified in that borehole, with one possible fracture at a depth of about 914 m, producing a major acoustic waveform anomaly. Comparison of acoustic tube-wave attenuation with models of tube-wave attenuation in infinite fractures of given aperture provide permeability estimates ranging from equivalent single-fractured apertures of less than 0.01 mm to apertures of > 0.5 mm. One possible fracture anomaly in borehole URL13 at a depth of about 914 m corresponds with a thin mafic dike on the core where unusually large acoustic contrast may have produced the observed waveform anomaly. No indications of naturally occurring flow existed in borehole URL13; however, flowmeter measurements indicated flow at < 0.05 L/min from the upper fracture zones in borehole WRA1 to deeper fractures at depths below 800 m. (Author 's abstract)

Water-Resources Investigations Report↗

Review of Phosphorus Control Measures in the United States and Their Effects on Water Quality

Historical information on phosphorus loadings to the environment and the effect on water quality are summarized in this report, which was produced as part of the U.S. Geological Survey's National Water-Quality Assessment (NAWQA) Program. Phosphorus is a water-quality constituent of concern because it is often the limiting nutrient responsible for accelerated eutrophication in water bodies. Phosphorus inputs to the environment have increased since 1950 as the use of phosphate fertilizer, manure, and phosphate laundry detergent increased; however, the manufacture of phosphate detergent for household laundry was ended voluntarily in about 1994 after many States had established phosphate detergent bans. Total phosphorus concentrations in raw wastewater effluent contained about 3 milligrams per liter of total phosphorus during the 1940's, increased to about 11 milligrams per liter at the height of phosphate detergent use (1970), and have currently declined to about 5 milligrams per liter. However, in some cases, tertiary wastewater treatment still is needed to effectively improve water quality of streams. Downward trends in phosphorus concentrations since 1970 have been identified in many streams, but median total phosphorus concentrations still exceed the recommended limit of 0.1 milligram per liter across much of the Nation. Data from the NAWQA Program are representative of a variety of phosphorus-control measures, and, therefore, may be used to evaluate the effects of various control strategies. Current areas of concern include: evaluation of the effects of increased manure loadings of phosphorus on soil phosphorus and, subsequently, on ground water and subsurface runoff; determination of point-source and nonpoint-source components of phosphorus loads by geographic modeling and hydrologic separation techniques; and development of methods or indices to evaluate nutrient impairment in streams and rivers to serve as a basis for developing phosphorus criteria or standards.

Water-Resources Investigations Report↗

Control of pest species: Tree shelters help protect seedlings from nutria

Various methods of nutria preventative techniques were tested in attempts to curb the loss of seedlings due to nutria capturing. The results of testing possibly indicate that tree shelters have real potential for use in forest restoration projects on sites with moderate nutria populations. Tree shelters may even prove effective on sites with high nutria populations, as long as alternative food supplies are available.

Louisiana↗

Canvasback mortality from illegal hunting on the upper Mississippi River

To quantify the consequences of local hunting on illegal kill of canvasbacks ( Aythya valisineria ), we studied the behavior of hunters on a 646-ha area open to duck hunting (closed to canvasback hunting) on Lake Onalaska, Navigation Pool 7, Wisconsin, during the 1991 and 1992 waterfowl hunting seasons. Law enforcement officers observed 258 hunting parties for 419 hours. Of 94 hunting parties encountering canvasbacks, 41 (44%) shot at the ducks on 56 occasions, or 27% of 207 encounters observed, Based on a ratio estimator, there were 790 (95% CI = 376) attempts to shoot at canvasbacks on the Lake Onalaska study area during 1991 and 837 (95% CI = 390) during 1992. Mortality of canvasbacks, excluding crippling loss, was estimated to be 128 during 1991 and 166 during 1992. Thus, total canvasback losses may be higher than currently estimated on a flyway or national basis. This estimating technique offers a promising method for enumerating hunter take of protected and legal species.

Wisconsin↗

Evaluating and understanding fish health risks and their consequences in propagated and free-ranging fish populations

Fishery managers and resource conservationists are increasingly interested in understanding the fish health and disease risks of free-ranging fishes and whether propagated fishes or features and practices used at fish culture facilities pose a health risk to free-ranging populations. Disease agents are present in most both captive and all free-ranging fish populations, but the consequences and extent of infections in free-ranging populations are often difficult to measure, control, and understand. Sampling methods, protocols, and assay techniques developed to assess the health of captive populations are not as applicable for assessments of free-ranging fishes. The use of chemicals and therapeutics to control diseases and parasites in propagated fishes likely reduces the risk of introducing specific pathogens into the environment, but control measures may have localized effects on the environment surrounding fish culture facilities. To understand health risks of propagated and free ranging fishes, we must consider fish populations, culture facilities, fish releases, and their interactions within the greater geospatial features of the aquatic environment. ?? 2004 by the American Fisheries Society.

American Fisheries Society Symposium↗

Valuation of rangeland ecosystem services

Economic valuation lends itself well to the anthropocentric orientation of ecosystem services. An economic perspective on ecosystems portrays them as natural assets providing a flow of goods and services valuable to individuals and society collectively. A few examples include the purification of drinking water, reduced risk from flooding and other extreme events, pollination of agricultural crops, climate regulation, and recreation opportunities from plant and animal habitat maintenance, among many others. Once these goods and services are identified and quantified, they can be monetized to complete the valuation process. The monetization of ecosystem goods and services (in the form of dollars) provides a common metric that allows for cross-comparison of attributes and evaluation of differing ecological scenarios. Complicating the monetization process is the fact that most of these goods and services are public and non-market in nature; meaning they are non-rival and non-exclusive and are typically not sold in a traditional market setting where monetary values are revealed. Instead, one must employ non-market valuation techniques, with primary valuation methods typically being very time and resource consuming, intimidating to non-economists, and often impractical. For these reasons, benefit transfer methods have gained popularity. This methodology harnesses the primary collection results of existing studies to make inferences about the economic values of non-market goods and services at an alternative policy site (in place and/or in time). For instance, if a primary valuation study on oak reestablishment on rangelands in southern California yielded a value of $30 per-acre associated with water regulation, this result can be transferred, with some adjustments, to say something about the value of an acre of oaks on rangelands in northern portions of the state. The economic valuation of rangeland ecosystem services has many roles. Economic values may be used as input into analyzing the costs and benefits associated with policies being proposed, or possibly already implemented. For example, with monetized values acting as a common metric, one could compare the 'benefits' of converting a rangeland ecosystem for commercial development (perhaps estimated at the market value of the developed land) with the foregone ecosystem service values (in addition to any land income lost) resulting from that land conversion. Similarly, ecosystem service values can be used to determine the level of return on an investment. rhis is a primary objective for private land conservation organizations who typically have very limited resources. Ecosystem service valuation can also have a role in damage assessments from incidents that require compensation such as oil spills. Additionally, valuation can be very informative when investigating regulatory programs that trade ecological assets such as wetland mitigation programs. Typically these programs are based simply on an 'acre for acre' criterion, and do not take into consideration varying welfare values associated with that ecosystem. Lastly, and most fundamental, ecosystem service valuation serves as a recognition tool for people of all backgrounds. Identifying and valuing ecosystem goods and services on rangelands brings to light the value these natural assets have to human welfare that often remain hidden do to their public and non-market attributes. This type of recognition is vital to the preservation of rangeland ecosystems in the future and the many ecological benefits they provide.

Conference Paper↗

Evaluating light-based geolocation for estimating demersal fish movements in high latitudes

We evaluated light - based geolocation estimates from pop-up satellite tags in high latitudes because some of the largest fisheries in the world are in areas where this technique has not been assessed. Daily longitude and latitude were estimated by using two Wildlife Computers software programs: 1) Argos Message Processor (AMP), which summarizes light intensity data transmitted to satellites, and 2) Time Series Processor (TSP), which uses more detailed data obtained from retrieved tags. Three experiments were conducted in the northern Gulf of Alaska using tags placed on 1) Pacific halibut in outdoor aquaria, 2) a fixed mooring line at various depths and 3) wild Pacific halibut. TSP performed better than AMP because the percentage of days with geolocation estimates was greater and the mean error magnitude and bias were smaller for TSP and increased with depth for both programs; however, latitude errors were much greater than longitude errors at all depths. Light - based geolocation enabled us to discern basin-scale movements and showed that the Pacific halibut in our study remained within the Gulf of Alaska. We conclude that this technique provides a feasible method for inferring large-scale population structure for demersal fishes in high latitudes.

Alaska↗

Self calibration of small and medium format digital cameras

The knowledge of a camera’s interior orientation parameters are a prerequisite for the camera to be used in any precision photogrammetric project. Historically, the interior orientation parameters have been determined by analyzing the measured ground 3D coordinates of photo-identifiable targets, and their 2D (image) coordinates from multiple images of these targets. Camera self calibration, on the other hand, uses targets on a scene that have not been measured before. In this research, we will briefly discuss existing self calibration techniques, and present two methods for camera self calibration that are being used at the U.S. Geological Survey’s Earth Resources Observation and Science (EROS) Data Center. The first method, developed by Pictometry (augmented by Dr C.S. Fraser), uses a series of coded targets on a cage. The coded targets form different patterns that are imaged from nine different locations with differing camera orientations. A free network solution using collinearity equations is used to determine the calibration parameters. The coded targets are placed on the cage in three different planes, which allows for a robust calibration procedure. The USGS/EROS has developed an inexpensive method for calibration, particularly for calibrating short focal length cameras. In this case, the coded targets are pasted on a small prototype box and imaged from different locations and camera orientations. The design of the box is discussed, and the results of the box and the cage calibrations are compared and analyzed.

Conference Paper↗

Scaling-up of CO2 fluxes to assess carbon sequestration in rangelands of Central Asia

Flux towers provide temporal quantification of local carbon dynamics at specific sites. The number and distribution of flux towers, however, are generally inadequate to quantify carbon fluxes across a landscape or ecoregion. Thus, scaling up of flux tower measurements through use of algorithms developed from remote sensing and GIS data is needed for spatial extrapolation of carbon fluxes and to identify regional sinks and sources of carbon. Spatial and temporal quantification of carbon dynamics are useful in understanding the biophysical factors that cause regions to be sinks or sources of carbon. We analyzed data sets from the Northern Great Plains and the Kazakh Steppe and found similarities in latitude, precipitation, and carbon fluxes between the two regions. These similarities allowed us to pool carbon flux data, remotely sensed data, and GIS data from these two regions to map gross primary productivity (Pg), total ecosystem respiration (Re), and net ecosystem exchange (NEE) for Kazakh Steppe for 2001 using regression tree techniques. We estimated 10-day Pg and Re with mean absolute errors of 3.2 and 2.7 g CO 2 /m 2 /day, respectively. The NEE for grasslands in the Kazakh Steppe during the growing season (April through October 2001) was 0.79 t C/ha. Localized carbon sinks and sources were positively correlated with growing season precipitation and Pg. The regression tree technique provided an effective method for the regional mapping of carbon dynamics as seasonally quantified by flux towers in the Northern Great Plains of North America and the Kazakh Steppe of Central Asia.

Conference Paper↗

Synergy between geology and geophysics in graphite mineral resource assessment

Graphite is designated as a critical mineral by the U.S. Government due to its essential role in modern technology and its vulnerability to supply chain disruption. To evaluate domestic graphite resources, the U.S. Geological Survey (USGS) conducted two airborne electromagnetic (AEM) surveys as part of the Earth Mapping Resources Initiative (Earth MRI) over prospective areas in the southern Appalachians of Alabama and the Seward Peninsula of Alaska. These surveys aimed to refine areas of interest by revealing subsurface electrical resistivity patterns indicative of graphite-bearing rocks. The results of the AEM surveys were integrated with existing geological knowledge and supplemented by field observations to assess the likelihood of undiscovered resources in these regions. This multidisciplinary approach combined geophysical techniques with traditional geological methods, enhancing the understanding of graphite potential in areas that may have been previously overlooked. The findings from this initiative are expected to contribute significantly to the ongoing efforts to secure a reliable domestic supply of graphite, thereby reducing import reliance and supporting national interests in mineral resource management.

Conference Paper↗

Graphical and PC-software analysis of volcano eruption precursors according to the Materials Failure Forecast Method (FFM)

The Materials Failure Forecasting Method for volcanic eruptions (FFM) analyses the rate of precursory phenomena. Time of eruption onset is derived from the time of “failure” implied by accelerating rate of deformation. The approach attempts to fit data, Ω, to the differential relationship Ω &#x3A9; &#xA8; = A &#x3A9; &#x2D9; "> ¨ = AΩ˙ , where the dot superscript represents the time derivative, and the data Ω may be any of several parameters describing the accelerating deformation or energy release of the volcanic system. Rate coefficients, A and α, may be derived from appropriate data sets to provide an estimate of time to “failure”. As the method is still an experimental technique, it should be used with appropriate judgment during times of volcanic crisis. Limitations of the approach are identified and discussed. Several kinds of eruption precursory phenomena, all simulating accelerating creep during the mechanical deformation of the system, can be used with FFM. Among these are tilt data, slope-distance measurements, crater fault movements and seismicity. The use of seismic coda, seismic amplitude-derived energy release and time-integrated amplitudes or coda lengths are examined. Usage of cumulative coda length directly has some practical advantages to more rigorously derived parameters, and RSAM and SSAM technologies appear to be well suited to real-time applications. One graphical and four numerical techniques of applying FFM are discussed. The graphical technique is based on an inverse representation of rate versus time. For α = 2, the inverse rate plot is linear; it is concave upward for α < 2 and concave downward for α > 2. The eruption time is found by simple extrapolation of the data set toward the time axis. Three numerical techniques are based on linear least-squares fits to linearized data sets. The “linearized least-squares technique” is most robust and is expected to be the most practical numerical technique. This technique is based on an iterative linearization of the given rate-time series. The hindsight technique is disadvantaged by a bias favouring a too early eruption time in foresight applications. The “log rate versus log acceleration technique”, utilizing a logarithmic representation of the fundamental differential equation, is disadvantaged by large data scatter after interpolation of accelerations. One further numerical technique, a nonlinear least-squares fit to rate data, requires special and more complex software. PC-oriented computer codes were developed for data manipulation, application of the three linearizing numerical methods, and curve fitting. Separate software is required for graphing purposes. All three linearizing techniques facilitate an eruption window based on a data envelope according to the linear least-squares fit, at a specific level of confidence, and an estimated rate at time of failure.

Journal of Volcanology and Geothermal Research↗

Mapping rice areas of South Asia using MODIS multitemporal data

Our goal is to map the rice areas of six South Asian countries using moderate-resolution imaging spectroradiometer (MODIS) time-series data for the time period 2000 to 2001. South Asia accounts for almost 40% of the world's harvested rice area and is also home to 74% of the population that lives on less than $2.00 a day. The population of the region is growing faster than its ability to produce rice. Thus, accurate and timely assessment of where and how rice is cultivated is important to craft food security and poverty alleviation strategies. We used a time series of eight-day, 500-m spatial resolution composite images from the MODIS sensor to produce rice maps and rice characteristics (e.g., intensity of cropping, cropping calendar) taking data for the years 2000 to 2001 and by adopting a suite of methods that include spectral matching techniques, decision trees, and ideal temporal profile data banks to rapidly identify and classify rice areas over large spatial extents. These methods are used in conjunction with ancillary spatial data sets (e.g., elevation, precipitation), national statistics, and maps, and a large volume of field-plot data. The resulting rice maps and statistics are compared against a subset of independent field-plot points and the best available subnational statistics on rice areas for the main crop growing season (kharif season). A fuzzy classification accuracy assessment for the 2000 to 2001 rice-map product, based on field-plot data, demonstrated accuracies from 67% to 100% for individual rice classes, with an overall accuracy of 80% for all classes. Most of the mixing was within rice classes. The derived physical rice area was highly correlated with the subnational statistics with R 2 values of 97% at the district level and 99% at the state level for 2000 to 2001. These results suggest that the methods, approaches, algorithms, and data sets we used are ideal for rapid, accurate, and large-scale mapping of paddy rice as well as for generating their statistics over large areas.

South Asia↗