USGS Science⌕ Search

SEARCH · USGS Science

Results for “Journal of Ecology”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 613 records · Page 34Linked to original sources

Mapping first to final uses for rare earth elements, globally and in the United States

Estimating the material flows of rare earth elements (REEs) is essential to understanding which industries are most vulnerable to potential REE supply disruptions which, in turn, may inform policy recommendations aimed at reducing the supply risk. However, the REEs are a group of mineral commodities characterized by highly uncertain estimates of supply and demand due to the REE market's complexity, opacity, and small size. In this study, a streamlined methodology was applied to map mineral commodity first-use to final-use applications and to estimate total requirements at the national level based on available industrial data for final-use finished goods. This analysis examines REEs both as a group and individually, showing that total US requirements are between 15% and 16.5% of world requirements for the year 2015, the latest year with the most complete information available. The findings shed light on US industrial capabilities by revealing the discrepancy between the types of REEs that go into US raw material consumption and those that are contained in embedded consumption. For instance, given the United States’ large oil refining industry, US raw material consumption of lanthanum is quite high. In contrast, US raw material consumption of neodymium is relatively low, whereas embedded demand is comparatively high. This reflects the lack of industrial capacity to process REE concentrates into magnet material combined with the US's high imports of products that contain rare earth permanent magnets.

Journal of Industrial Ecology↗

Understanding key mineral supply chain dynamics using economics-informed material flow analysis and Bayesian optimization

The low-carbon energy transition requires significant increases in production for many mineral commodities. Understanding demand, technological requirements, and prices associated with this production increase requires understanding the supply chain dynamics of many minerals simultaneously, and via a consistent framework. A generalized economics-informed material flow method, global materials modeling using Bayesian optimization, captures the market dynamics of key mineral commodities. The method relies only on a limited set of widely available historical data as input, enabling quantification of economic relationships (elasticities) for supply chain components where data are sparse, and relationships cannot be obtained via traditional statistical approaches. Building upon established material flow analysis (MFA) and economic modeling techniques, Bayesian optimization was applied to fit an economics-informed MFA model to global historical demand, supply, and price for aluminum, copper, gold, lead, nickel, silver, iron, tin, and zinc. This approach enables estimates for the evolution of ore grades, mine costs, refining charges, sector-specific demand, and scrap collection for each commodity. Economic relationships were quantified and compared with a database compiled from the literature, including 1333 values from 213 analyses across 65 publications. Discrepancies in methods and limited coverage make use of these parameters in modeling efforts difficult. This work provides a single, homogeneous, probabilistic approach to identifying economic relationships across mineral supply chains, with uncertainty quantification, a literature database for comparison, and a modeling framework in which to use them. This article met the requirements for a Gold-Gold JIE data openness badge described at http://jie.click/badges .

Journal of Industrial Ecology↗

Plague management of prairie dog colonies: Degree and duration of deltamethrin flea control

Plague is a flea-borne disease of mammalian hosts. On the grasslands of western North America, plague stifles populations of Cynomys spp. prairie dogs (PDs). To manage plague, PD burrows are treated with 0.05% deltamethrin dust that can suppress flea numbers and plague transmission. Here, we evaluate the degree and duration of deltamethrin flea control with three PD species at six sites across four U.S. states. Data were simultaneously collected at paired plots. Burrows from one randomly assigned member of each pair were treated with deltamethrin; non-treated plots served as experimental baselines. Flea control was strong ≤two months after treatment, remained moderate one year later, and was statistically detectable for up to two years at some sites. Flea abundance was lower in plots with higher rates of deltamethrin application. After burrow treatments, flea abundance increased over time, reaching >one per PD within 255 to 352 days. Nevertheless, annual treatments of burrows with deltamethrin provided PDs with substantial protection against plague. Even so, deltamethrin should be further evaluated and combined with other tools under an integrated approach to plague management. Integrated plague management should help to conserve PDs and species that associate with them, including the endangered black-footed ferret ( Mustela nigripes ).

Montana, South Dakota, Utah↗

Evidence of Culiseta mosquitoes as vectors for Plasmodium parasites in Alaska

Mosquito vectors play a crucial role in the distribution of avian Plasmodium parasites worldwide. At northern latitudes, where climate warming is most pronounced, there are questions about possible changes in the abundance and distribution of Plasmodium parasites, their vectors, and their impacts to avian hosts. To better understand the transmission of Plasmodium among local birds and to gather baseline data on potential vectors, we sampled a total of 3,909 mosquitoes from three locations in south‐central Alaska during the summer of 2016. We screened mosquitoes for the presence of Plasmodium parasites using molecular techniques and estimated Plasmodium infection rates per 1,000 mosquitoes using maximum likelihood methods. We found low estimated infection rates across all mosquitoes (1.28 per 1,000), with significantly higher rates in Culiseta mosquitoes (7.91 per 1,000) than in Aedes mosquitoes (0.57 per 1,000). We detected Plasmodium in a single head/thorax sample of Culiseta , indicating potential for transmission of these parasites by mosquitoes of this genus. Plasmodium parasite DNA isolated from mosquitoes showed a 100% identity match to the BT7 Plasmodium lineage that has been detected in numerous avian species worldwide. Additionally, microscopic analysis of blood smears collected from black‐capped chickadees ( Poecile atricapillus ) at the same locations revealed infection by parasites preliminarily identified as Plasmodium circumflexum . Results from our study provide the first information on Plasmodium infection rates in Alaskan mosquitoes and evidence that Culiseta species may play a role in the transmission and maintenance of Plasmodium parasites in this region.

Alaska↗

Managing plague on prairie dog colonies: Insecticides as ectoparasiticides

Human health practitioners and wildlife biologists use insecticides to manage plague by suppressing fleas (Siphonaptera), but insecticides can also kill other ectoparasites. We investigated effects of deltamethrin and fipronil on ectoparasites from black-tailed prairie dogs ( Cynomys ludovicianus , BTPDs). In late July, 2018, we treated three sites with 0.05% deltamethrin dust and 5 sites with host-fed 0.005% fipronil grain. Three non-treated sites functioned as experimental baselines. We collected ectoparasites before treatments (June-July, 2018) and after treatments (August-October, 2018, June-July, 2019). Both deltamethrin and fipronil suppressed fleas for at least 12 months. Deltamethrin had no detectable effect on mites (Arachnida). Fipronil suppressed mites for at least 12 months. Lice (Phthiraptera) were scarce on non-treated sites throughout the study, complicating interpretation. Concentrating on eight sites where all three ectoparasites where found in June-July, 2018 (before treatments), flea intensity was greatest on BTPDs carrying many lice and mites. These three ectoparasites co-occurred at high numbers, which might facilitate plague transmission in some cases. Lethal effects of insecticides on ectoparasite communities are potentially advantageous in the context of plague management.

South Dakota↗

Impacts of environmental conditions on fleas in black-tailed prairie dog burrows

Sylvatic plague, caused by the bacterium Yersinia pestis and transmitted by fleas, occurs in prairie dogs of the western United States. Outbreaks can devastate prairie dog communities, often causing nearly 100% mortality. Three competent flea vectors, prairie dog specialists Oropsylla hirsuta and O. tuberculata , and generalist Pulex simulans , are found on prairie dogs and in their burrows. Fleas are affected by climate, which varies across the range of black‐tailed prairie dogs ( Cynomys ludovicianus ), but these effects may be ameliorated somewhat due to the burrowing habits of prairie dogs. Our goal was to assess how temperature and precipitation affect off‐host flea abundance and whether relative flea abundance varied across the range of black‐tailed prairie dogs. Flea abundance was measured by swabbing 300 prairie dog burrows at six widely distributed sites in early and late summer of 2016 and 2017. Relative abundance of flea species varied among sites and sampling sessions. Flea abundance and prevalence increased with monthly mean high temperature and declined with higher winter precipitation. Predicted climate change in North America will likely influence flea abundance and distribution, thereby impacting plague dynamics in prairie dog colonies.

Arizona, California, Colorado, Idaho, Kansas, Mont↗

Size-specific apparent survival rate estimates of white sharks using mark-recapture models

For species that exist at low abundance or are otherwise difficult to study, it is challenging to estimate vital rates such as survival and fecundity and common to assume that survival rates are constant across ages and sexes. Population assessments based on overly simplistic vital rates can lead to erroneous conclusions. We estimated sex and length-based annual apparent survival rates for white sharks (Carcharodon carcharias). We found evidence that annual apparent survival differed over ontogeny in a system with competitive foraging aggregations, from 0.63 (SE = 0.08) for newly recruiting sub-adults to 0.95 (SE = 0.02) for the largest sharks. Our results reveal a potential challenge to ontogenetic recruitment in a long-lived, highly mobile top marine predator, as survival rates for sub-adult white sharks may be lower than previously assumed. Alternatively, younger and competitively inferior individuals may be forced to permanently emigrate from primary foraging sites. This study provides new methodology for estimating apparent survival as a function of diverse covariates by capture-recapture study including when sex assignment is uncertain.

California↗

Contamination of the freshwater ecosystem by pesticides

A large part of our disquieting present-day pesticide problem is intimately tied to the freshwater ecosystem. Economic poisons are used in so many types of terrain to control so many kinds of organisms that almost all lakes and streams are likely to be contaminated. In addition to accidental contamination many pesticides are deliberately applied directly to fresh waters for suppression of aquatic animals or plants. The problem is intensified because of the extreme susceptibility of freshwater organisms. The complexity of freshwater environments and their variety makes it difficult to comprehend the total effect of pesticides.

Journal of Applied Ecology↗

Insecticide contaminations in wetland habitats and their effects on fish- eating birds

An unusual mortality of fish-eating birds occurred at the Tule Lake National Wildlife Refuge in California between 1960 and 1962. Over 1100 dead birds of ten species were found during that period. Investigations of the mortality indicated that birds died as a result of their exposure to toxaphene, which was applied to adjoining agricultural areas, transported to the refuge in waste irrigation water, and accumulated in fish eaten by the birds. Toxaphene was used in agriculture for only 3 years, 1958-60, and by 1962 residues were no longer found in the marsh habitat. However, results also showed that a potentially hazardous contamination of DDT and its metabolites was present in the birds and the environment. Studies were, therefore, continued to determine the food-chain relationships of DDT in marsh ecosystems, and the effects of the insecticide on birds. Sampling for insecticide residues was undertaken at four waterfowl refuges, each representing a somewhat different set of environmental conditions. DDT residues in water at each refuge were found to be relatively low, but filtered samples showed that residues in suspended material were 10 000 to 20 000 times as great as those in the filtrate. Much of the suspended material was organic matter, which is an important source of energy for the ecosystems. In environments with invertebrates, DDT residues were relatively low in sediments and high in fish, while residues in vegetation were highest where invertebrates were absent. Results suggest that organic materials and invertebrates can be important factors in determining the fate and involvement of insecticides in aquatic environments. Studies of the movements, exposure to pesticides, productivity, and longevity of individuals in three nesting colonies of White Pelicans were begun in 1962 to depict the relationships of pesticides to a migratory population of birds dependent upon wetland habitats. To date there is no evidence that the exposure of pelicans to DDT is influencing the population dynamics of the birds.

California, Oregon↗

Persistence in earthworms and potential hazards to birds of soil applied DDT, dieldrin, and heptachlor

(1) DDT, dieldrin, and heptachlor were each applied to separate replicate plots in a hay field at 0.6, 2.2, or 9.0 kg/ha. For 11 yr thereafter, soil and earthworms were analysed for residues. (2) The average ratios of residues in earthworms (dry weight) to residues in soil (dry weight) were: total DDT, 5; dieldrin, 8; and heptachlor epoxide, 10. The average time for the initial residues in soil to be reduced by 50% were: total DDT, 3.2 yr; dieldrin, 5.1 yr; and heptachlor epoxide, 3.2 yr. The corresponding times for residues in earthworms were: total DDT, 3.2 yr; dieldrin, 2.6 yr; and heptachlor epoxide, 3.0 yr. (3) DDE was most persistent, and in plots treated at 9.0 kg/ha its concentration remained constant at about 0.4 ppm in soil and about 7 ppm in earthworms. (4) When applied at 9.0 kg/ha, DDT accumulated in earthworms to concentrations (32 ppm) which laboratory studies have shown to be hazardous to some sensitive bird species. When heptachlor was applied at 2.2 or 9.0 kg/ha, heptachlor epoxide in earthworms reached concentrations (8 ppm) potentially hazardous to woodcock. Dieldrin remained at potentially hazardous concentrations (8 ppm) for 3 yr in plots treated with 2.2 kg/ha and for 11 yr in plots treated with 9.0 kg/ha.

Journal of Applied Ecology↗

Reproduction by an altricial songbird, the red-winged blackbird, in fields treated with the organophosphate insecticide fenthion

(1) Breeding red-winged blackbirds were used as a model to study the effects of a single application of an organophosphate insecticide, fenthion, on reproduction of altricial songbirds. (2) The insecticide had no significant effect on frequency of nest abandonment, clutch size, hatching success, or fledgling success. (3) Growth rates of young nestlings were lower in nests on one of two treated areas, but overall growth rates of survivors were not significantly different from controls in nests on nearby unsprayed areas. (4) The insecticide had no measured effect on male spatial organization. (5) Measures of abundance of the principal nestling food item, noctuid larvae, showed that one application of the insecticide significantly reduced the abundance of the food supply, but the reduction of food supply did not result in a decrease in nestling growth rates or fledgling success.

Wyoming↗

Care of nestlings by wild female starlings exposed to an organophosphate pesticide

(1) Our objective was to determine the effect of exposure to an organophosphate pesticide (OP), dicrotophos (3-hydroxy- N,N -dimethyl- cis -scrotonamide dimethyl phosphate), on care of nestlings by wild female starlings ( Sturnus vulgaris ). (2) We selected twelve pairs of active nests based on synchrony in the reproductive cycle. When nestlings were 10 days old (day 10), adult males were captured and killed and brood size was adjusted to four. The frequency and temporal distribution of sorties made by each pair of females to feed their young were recorded for 2 h at 18.00 hours on day 11 and 06.00 hours on day 12. One female from each pair was given a single oral dose of dicrotophos (2.5 mg/kg of body weight) dissolved in corn oil; the second female received an equivalent exposure of pure corn oil. Birds were released and their nestlings weighed. Parental care was again monitored between 18.00 and 20.00 hours on day 12 and 06.00 and 08.00 hours on day 13. Females were then captured and they with their young were weighed and killed. Changes in parental care in OP-dosed and control females were compared using paired t-tests. (3) The OP-dosed females made significantly ( P < 0.5) fewer sorties to feed their young and remained away from their boxes for longer periods of time than controls. Nestlings of OP-treated females lost significantly more weight ( X̄ = 9.3%) than nestlings of controls ( X̄ = 3.2%). Brain ChE activity in OP-treated females was inhibited an average of 50.7% compared with controls. Weight changes in OP-dosed ( X̄ = -8.9%) and control females ( X̄ = -8.3%) were similar. (4) Results indicate that parental care may be significantly reduced in songbirds receiving severe but sublethal exposure to organophosphate pesticides. The potential for a reduction or modification in parental care to alter reproductive success in passerines is discussed. (5) Techniques utilized, or modifications thereof, may be useful in collecting the additional data needed to adequately assess the impact of OPs on songbird reproduction.

Journal of Applied Ecology↗

Effects of roads on small mammals

(1) The study was designed to determine the effects of roads on the diversity, spatial distribution, and density of small mammals. (2) Forty species of small mammal (5859 individuals) were snap-trapped in the study. Data resulted from 144 360 trap-nights of effort for an average of 4.06 captures per 100 trap-nights. (3) Small mammal community structure and density were both influenced by roads. Community structure in right-of-way (ROW) habitat was different from that in adjacent habitat. Five species did not prefer ROW habitat: the golden mouse, dusky-footed woodrat, brush mouse, pinon mouse, and California red-backed vole. However, there were more species present in ROW habitat than in adjacent habitat. Grassland species generally preferred ROW habitat and many less habitat-specific species were distributed in ROW and adjacent habitat. (4) Small mammal density (all species combined) was greater in interstate ROW habitat than in adjacent habitat. This was also true individually for the eastern harvest mouse, white-footed mouse, meadow vole, prairie vole, vagrant shrew. Townsend's vole, and California vole. Small mammal density was less in county road ROWs than in adjacent habitat, probably because of the small size of these areas. The data indicate that ROW habitat and its accompanying edge are attractive no: only to grassland species but also to many less habitat-specific species that make use of the ROW-edge-adjacent habitat complex. (5) Mortality on interstate highways was greatest for those species with highest densities in ROW habitat, and did not appear to be detrimental to populations of these species.

Journal of Applied Ecology↗

Effects of substrate disturbance on secondary plant succession; Mojave Desert, California.

(1) The effects of substrate disturbance on perennial plant succession in the Mojave Desert were assessed at three military camps abandoned for 40 years. (2) Soil compaction, removal of the top layer of soil, and alteration of drainage channel density caused significant changes in perennial plant cover, density, and relative species composition. (3) Long-lived species, predominantly Larrea tridentata , were dominant in all control areas but percentage cover and density were greatly reduced in areas where substrate alterations were significant. (4) Pioneer species such as Ambrosia dumosa and Hymenoclea salsola had percentage cover values similar to or greater than controls in most areas where substrate alterations were significant, and these species were dominant in the majority of disturbed areas. (5) Where substrate alterations were insignificant in disturbed areas at one camp, Larrea was the dominant species as in the control.

Journal of Applied Ecology↗

Excavation of red squirrel middens by grizzly bears in the whitebark pine zone

Whitebark pine seeds Pinus albicaulis are an important food of grizzly Ursus arctos horribilis bears wherever whitebark pine is abundant in the contiguous United States of America; availability of seeds affects the distribution of bears, and the level of conflict between bears and humans. Almost all of the seeds consumed by bears are excavated from middens where red squirrels Tamiasciurus hudsonicus have cached whitebark pine cones. Relationships among the occupancy of middens by squirrels, the excavation of middens by bears, and site features were investigated in this study. Data were collected from radio-marked bears and from middens located from line transects on two study sites in the Yellowstone ecosystem. Densities of active middens were positively related to lodgepole pine Pinus contorta basal area and negatively related to steepness of slope. The probability that a midden was occupied by a squirrel (i.e. active) was positively related to lodgepole pine basal area in the surrounding stand, size of the midden and size of the whitebark pine cone crop, and negatively related to elevation and to bear excavation during the previous 2-12 months. The probability that a midden had been excavated by a bear during the previous 12 months was positively related to size of the midden, and to whitebark pine basal area and cone crop, and negatively related to nearness of roads and town sites. The influence of midden size on bear use was attributable to a positive relationship with the number of excavated cones. The positive association between bear excavations and whitebark pine basal area or cone crops was attributable to availability of pine seeds. Grizzly bears would benefit from the minimization of roads and other human facilities in the whitebark pine zone and from increases in the availability of whitebark pine seeds, potentially achieved by increasing the numbers of cone-producing whitebark pine trees, especially in lower elevations of the whitebark pine zone where red squirrels are more abundant.

Journal of Applied Ecology↗

The demography of the lizard, Uta stansburiana Baird and Girard, in southern Nevada

Between 1966 and 1967 populations of Uta stansburiana in southern Nevada increased about 40%. Over the next year they declined by about 50%. These changes are explained in terms of annual differences in fecundity and survival. Most females laid five clutches of eggs in 1966, but only two or three clutches in 1967. Adult survival between 1966 and 1967 was better than during the following year. The capacity for increase, rc, was estimated as 0.0327/month, and cohort generation time, Tc, as 15.32 months from the 1966-67 data. Data from other natural populations of lizards are reviewed and the inferred net reproductive rates (Ro) compared with the history of the populations. Problems in the study of lizard populations are discussed, particularly the difficulty in assessing egg production by species laying several clutches of eggs each season.

Journal of Animal Ecology↗

Problems in estimating age-specific survival rates from recovery data of birds ringed as young

(1) The life table model is frequently employed in the analysis of ringer samples of young in bird populations. The basic model is biologically unrealistic and of little use in making inferences concerning age-specific survival probabilities. (2) This model rests on a number of restrictive assumptions, the failure of which causes serious biases. Several important assumptions are not met with real data and the estimators of age-specific survival are not robust enough to these failures. (3) Five major problems in the use of the life table method are reviewed. Examples are provided to illustrate several of the problems involved in using this method in making inferences about survival rates and its age-specific nature. (4) We conclude that this is an invalid procedure and it should not be used. Furthermore, ringing studies involving only young birds are pointless as regards survival estimation because no valid method exists for estimating age-specific or time-specific survival rates from such data. (5) In our view, inferences about age-specific survival rates are possible only if both young and adult (or young, subadult and adult) age classes are ringed each year for k years ( k ≥ 2).

Journal of Animal Ecology↗

Growth and equilibrium in sea otter populations

(1) Counts through time were compiled for five sea otter ( Enhydra lutris ) populations in the north-east Pacific Ocean that were below equilibrium density: Attu Island, south-east Alaska, British Columbia, Washington State, and central California. Similar data were obtained from the equilibrium density population at Amchitka Island in 1971 and 1986. (2) Shorelines of Attu and Amchitka islands each were divided into forty-five segments, within which lineal (length of shore at mean higher high water) and areal (mean higher high water to the 10-fathom (18.3-m) depth contour) measures were made of the amount of habitat. (3) Rate of increase for the four northern populations was 17-20% year-1. Density- or size-dependent changes in rate of increase could not be demonstrated for any of these populations. The California population, in contrast, has undergone three apparent growth phases: the early 1900s to the mid-1970s when it increased about 5% year-1; the mid-1970s to the mid-1980s when it declined about 5% year-1; and the mid-1980s to 1988 when it increased about 7% year-1. An exponential growth model accounted for 92-98% of the variation in counts through time in all cases. (4) Population increase at Attu Island was achieved largely by range expansion as opposed to increased density. Range expansion in lineal and areal habitat occurred at 11% and 13% year-1, respectively; neither rate was lower (P > 0.25) than the observed rate of increase in numbers of animals counted. (5) Despite similarities in island size and physical environment, the most conservative estimates of population density at Amchitka Island were > 3 X greater than maximum density estimates for Attu Island. (6) Surveys of Amchitka Island from the mid-1930s through the mid-1980s indicate that the population increased to a peak in the 1940s; declined abruptly thereafter; and subsequently increased to a new and higher equilibrium in the 1960s, where it has since remained. (7) These population data, together with information on sea otter foraging and benthic community structure at Attu and Amchitka islands, suggest that multiple population equilibria exist in this system, emanating from complex trophic interactions low in the food web. I hypothesize that the lower population equilibrium is achieved largely or exclusively on an invertebrate diet consisting principally of herbivorous sea urchins. When unregulated by sea otter predation, the rocky benthos is deforested by sea urchin grazing. As growing otter populations compete increasingly for food, grazing intensity declines and the system shifts to one dominated by kelp beds, in turn leading to increased production, a shift in habitat structure, and population increases of kelp bed fishes. Apparently this new food resource elevates the sea otter population to a higher and more stable equilibrium.

Journal of Animal Ecology↗