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At least 613 records · Page 34Linked to original sources

Green River oil shale—concept of origin extended: An interdisciplinary problem being attacked from both ends

A much fuller understanding of the Green River oil shale and its organic chemistry will emerge when the geologists, paleontologists, organic chemists, biologists, paleolimnologists, and biogeochemists, who are now working on it, integrate their findings with those of the others. We know from the geology, paleontology, and paleolimnology that the biologic progenitors of the organic substance in the Green River oil shale could only have been microscopic algae, and other micro-organisms, that grew and accumulated in the central parts of large, shallow lakes that existed under a subtropical climate. The only nonlacustrine organic components were wind-blown, or water borne, pollens and waxy spores. These, however, made up a large and important part of the organic-rich sediment. The geology of the Green River Formation shows that as the algal and pollen-rich sediment was buried deeper and deeper, progressively more of its pore water and dissolved constituents were expressed. Static pressures may have reached as much as 210 kg cm −2 , and the ambient temperature rose, with depth, to somewhere within the range between 90° and 125° C. Beneath the ancient lakes a tectonically quiescent environment persisted for tens of millions of years after their organic sediments had been deeply buried. The organic material of the Green River oil shale can be divided into three fractions—a small bitumen fraction that is extractable with common organic solvents, a major fraction called koerogen that consists of insoluble pyrobitumens, and a somewhat smaller inert fraction that is neither soluble nor does it yield oil on pyrolysis. As all three fractions originated in the same algal, pollen-rich sediment, an explanation for their marked differences must be sought in their geochemical history or from a study of the modern analogues of their progenitors. The components of the bitumen fraction consisted of “biological markers” that were inherited from the Eocene plants and animals in which they originally formed. Diagenesis has changed these hydrogen-rich compounds, but not enough to obscure their provenance. Kerogen presumably became insoluble because its hydrogen-rich components polymerized. My speculation is that the inert fraction was derived from a polyphenolic substance produced in the original algal ooze by “non-enzymatic browning.” Only three Classes of non-marine algae need be considered as progenitors of the Green River oil shale; the Xanthophyceae, the Chlorophyceae, and the Cyanophyceae. Only the Cyanophyceae (the blue-green algae) meet the biologic and paleontologic requirements to have served as the dominant precursors of the Green River oil shale. Several other oil shales clearly were derived from the Xanthophyceae, specifically Botryococcus. The blue-green algal ooze now forming, and accumulating, in Mud Lake, Florida, has been studied biologically and chemically as a possible present-day analogue of the Green River oil shale precursor. In this small lake we have established the fact that a bacterial inhibitor is produced, which inhibits decay of the algae and thereby permits the accumulation of energy-rich organic compounds. We infer that a similar indigenous inhibitor must have acted in the Eocene lakes to permit them to become the huge energy sinks they were. Studies of the organic chemistry of living blue-green algae show that they contain appreciable percentages of fatty acids, hydrocarbons, and very large percentages of proteins. These promising, energy-rich compounds could serve as source materials for potential conversion into oil shale in the geologic future. Certain marine anaerobic bacteria convert fatty acids into aliphatic hydrocarbons. Fresh-water obligate anaerobes should be investigated to see if they also convert fatty acids into hydrocarbons. The part played by aquatic animals that live in, or on, freshwater algal ooze in synthesizing hydrocarbons has not been investigated, but deserves attention. Pollen grains, of course, must be considered an important precursor of hydrocarbons produced on pyrolysis. They contain far higher percentages of long chain hydrocarbons and alcohols than most plant materials. The major problem ahead is to account for the progressive hydrogenation and subsequent polymerization of the relatively oxygen-rich constituents of algae such as the polysaccharides, amino acids, ammo sugars, and fatty acids into the insoluble pyrobitumens that constitute, particularly, the kerogen fraction of the Green River oil shale.

Wyoming↗

Dissolved saxitoxin causes transient inhibition of sensorimotor function in larval Pacific herring (Clupea harengus pallasi) Kathi A. Lefebvre , N

Herring ( Clupea harengus pallasi ) spawning sites in Puget Sound, Washington overlap spatially and temporally with blooms of Alexandrium catenella , a toxic dinoflagellate species responsible for paralytic shellfish poisoning. Consequently, newly hatched herring larvae may be regularly exposed to the suite of dissolved paralytic shellfish toxins that are released into the water column from toxic cells during blooms. To date, virtually nothing is known about the impacts of these neurotoxins on early developmental stages of marine fish. In the present study, herring larvae at three ages, 0 days post hatch (dph), 4 dph, and 11 dph, were exposed to dissolved saxitoxin (STX) in 24-h and multi-day exposures. All larvae were examined for sensorimotor function (i.e. spontaneous swimming behavior and touch response). Significant reductions in spontaneous and touch-activated swimming behavior occurred within 1 h of exposure. EC 50 s at 1 h of exposure were 1,500, 840, and 700 μg STX equiv. l −1 for larvae introduced to STX at 0, 4, and 11 dph, respectively. This progressive age-specific increase in STX-induced paralysis suggests that older larvae were more sensitive to the toxin than younger larvae. Interestingly, herring larvae at all ages exhibited a significant degree of neurobehavioral recovery within 4–24 h of continuous exposure relative to the 1-h time point. This recovery of normal motor behaviors was not observed in previous studies with freshwater zebrafish ( Danio rerio ) larvae under the same continuous exposure conditions, suggesting that an adaptive detoxification or toxin sequestration mechanism may have evolved in some species of marine fish larvae. Our data reveal that (1) dissolved STX is bioavailable to marine finfish larvae, (2) the toxin is a paralytic agent with potencies that differ between developmental stages, and (3) STX-induced sensorimotor inhibition occurs rapidly but is transient in marine larvae. Collectively, these results suggest that dissolved algal toxins may have important sublethal effects on marine fish populations.

Marine Biology↗

The rapid return of marine-derived nutrients to a freshwater food web following dam removal

Dam removal is increasingly being recognized as a viable river restoration action. Although the main beneficiaries of restored connectivity are often migratory fish populations, little is known regarding recovery of other parts of the freshwater food web, particularly terrestrial components. We measured stable isotopes in key components to the freshwater food web: salmon, freshwater macroinvertebrates and a river specialist bird, American dipper ( Cinclus mexicanus ), before and after removal of the Elwha Dam, WA, USA. Less than a year after dam removal, salmon returned to the system and released marine-derived nutrients (MDN). In that same year we documented an increase in stable-nitrogen and carbon isotope ratios in American dippers. These results indicate that MDN from anadromous fish, an important nutrient subsidy that crosses the aquatic–terrestrial boundary, can return rapidly to food webs after dams are removed which is an important component of ecosystem recovery.

Washington↗

What can commercial fishery data in the Great Lakes reveal about juvenile sea lamprey (Petromyzon marinus) ecology and management?

The Laurentian Great Lakes of North America support a large and profitable freshwater fishery, but one continuously beset by parasitism from the invasive sea lamprey ( Petromyzon marinus ). Despite being the life stage that inflicts damage to the fishery, therefore necessitating a bi-national control program, our knowledge of juvenile sea lamprey ecology is poor and their response to control efforts are not assessed. Incidental capture of juvenile sea lamprey by commercial fishers is one means to collect data on this enigmatic life stage, and in Lake Huron such data have been collated since 1967. Here, we explore incidental captures of juvenile sea lamprey and their hosts from northern Lake Huron between 1987 and 2017 ( n = 33,246 observations) to address four objectives. Firstly, we document collection efforts by fishers to provide historical context to the dataset. Secondly, we pose and test a series of questions related to fishery encounter, host selection, growth, distribution, and sex ratio to highlight how these types of data can be informative regarding juvenile sea lamprey ecology. Results presented here could be used to develop biological hypotheses to be addressed in future work. Thirdly, we directly assessed whether juvenile sea lamprey capture data could be useful in corroborating trends observed in adult sea lamprey abundance and wounding, as well as in identifying abundance and wounding hotspots. Lastly, we summarize research and outreach efforts that have benefited from the capture of juvenile sea lamprey in recent years.

Great Lakes↗

Pesticide Toxicity Index: a tool for assessing potential toxicity of pesticide mixtures to freshwater aquatic organisms

Pesticide mixtures are common in streams with agricultural or urban influence in the watershed. The Pesticide Toxicity Index (PTI) is a screening tool to assess potential aquatic toxicity of complex pesticide mixtures by combining measures of pesticide exposure and acute toxicity in an additive toxic-unit model. The PTI is determined separately for fish, cladocerans, and benthic invertebrates. This study expands the number of pesticides and degradates included in previous editions of the PTI from 124 to 492 pesticides and degradates, and includes two types of PTI for use in different applications, depending on study objectives. The Median-PTI was calculated from median toxicity values for individual pesticides, so is robust to outliers and is appropriate for comparing relative potential toxicity among samples, sites, or pesticides. The Sensitive-PTI uses the 5th percentile of available toxicity values, so is a more sensitive screening-level indicator of potential toxicity. PTI predictions of toxicity in environmental samples were tested using data aggregated from published field studies that measured pesticide concentrations and toxicity to Ceriodaphnia dubia in ambient stream water. C. dubia survival was reduced to ≤ 50% of controls in 44% of samples with Median-PTI values of 0.1–1, and to 0% in 96% of samples with Median-PTI values > 1. The PTI is a relative, but quantitative, indicator of potential toxicity that can be used to evaluate relationships between pesticide exposure and biological condition.

Science of the Total Environment↗

Synthesis of the paleoclimatic record from Owens Lake core OL-92

During much of the late Quaternary, Owens Lake overflowed into one or more of four successively lower-elevation basins. Most of the water came from the high, eastern slopes of the southern Sierra Nevada, and changes in the volumes of that water reflect a dominant climatic cycle of ~100 k.y. Variations in the inflow to, and outflow from, Owens Lake since ca. 800 ka left biological, chemical, mineralogical, and geophysical evidence in the sediments of those changes. Biological evidence includes fossil ostracodes, diatoms, fish, and mollusks (and δ 18 O data from their shells) which indicate fresh or brackish lake water on the basis of their modern habitats. Fossil pollens indicate ~20 regional vegetation cycles during the same period. Chemical evidence of high inflow and, commonly, outflow volumes is provided by the low inorganic- and organic-C content of some sediments, reflecting short lake-water residence times; long residence times produced higher and more variable quantities of these components. Mineralogical variations in illite/smectite ratios indicate changes in weathering processes and glacial comminution. High magnetic susceptibility correlates with other criteria that indicate high runoff. Between 810 ka and 645 ka, Owens Lake was fresh, several meters deep, and depositing silt with a few beds of sand; it supported a flora and fauna now found in fresh, sometimes very cool, waters. (Note that most geologic ages describing the OL-92 chronology have been rounded to the nearest 5 or 10 ka.) A shallow-but-freshwater lake may have been the result of accelerated sedimentation during an earlier (>800 ka) glaciation in the Sierra Nevada, choking the basin with sediment nearly to its spillway level. Between 645 ka and 450 ka, the lake was probably even shallower, depositing beds of coarse to fine sand, but overflowing periodically allowing its water to remain fresh. Between 450 ka and 5 ka, Owens Lake was mostly deep, alternating between spilling and being closed part of the time. It deposited silt and clay on its floor, yet underwent detectable variations in salinity caused by climate changes; this part of the record is the most easily interpreted and constitutes the main basis for comparing this paleoclimatic record with other long records. From 5 ka to A.D. 1913, when the Owens River was diverted into an aqueduct, Owens Lake was shallow (~2 m to ~15 m), moderately saline (~5% to <15% salts), and depositing oolites. After 1913, the lake desiccated. Comparison of the Owens Lake water-depth record with that of Searles Lake, two-basins downstream during much of late Pleistocene time, shows that they underwent similar responses to climate, but sedimentation changes documenting those responses commenced thousands of years apart, apparently because changes in precipitation volumes occurred gradually. Owens Lake, at the base of high mountains, was the first to reflect increasing amounts of regional precipitation; Searles, in a more arid environment, was the first to reflect decreasing amounts of precipitation. Devils Hole, 150 km east of Owens Lake, has a well dated isotopic-temperature record that resembles the Owens Lake-depth record. Marine records of Pleistocene glacial fluctuations, which measure high-latitude ice-sheet volumes and thus both precipitation and temperature at those latitudes, also resemble the Owens Lake history. There are, however, differences between the ages of the maxima and minima of climatic events as reconstructed from the Owens Lake core and similar-appearing inflections in the other two records; the differences range from 0 to 33 k.y. and average ~15 k.y. The question arises whether the differences between those ages are results of errors in the time-scale used for the Owens Lake record, or were there significant differences in the times when atmospheric climate change began to affect its different elements. The three records compared here are measurements of different elements and combinations of elements in two latitude belts: the deep-sea marine records measure combinations of temperature and precipitation that determined global ice volumes (at mostly high latitudes), the Devils Hole record measures atmospheric temperatures (in its mid-latitude region), and the Owens Lake record measures effective precipitation (in the same mid-latitude region).

California↗

Nitrogen dynamics in the tidal freshwater Potomac River, Maryland and Virginia, water years 1979-81

On an annual basis, river-supplied nitrate is the predominant form of nitrogen supplied to the tidal Potomac River from external sources. Much of the nitrate is associated with high flows that have rapid transit times through the tidal river. The Blue Plains Sewage-Treatment Plant (STP) at Washington, D.C., is the greatest source of all nitrogen species during low-flow periods. Prior to the fall of 1980, ammonia concentrations in depth-integrated, composited water samples were greatest (more than 1.00 mg/L (milligram per liter) as nitrogen) during summer periods near Alexandria, Va., because of loading from the nearby Blue Plains STP and reduced river discharge. After the fall of 1980, initiation of advanced wastewater treatment at the Blue Plains STP reduced ammonia loading to the river by 90 percent and increased nitrate loading by a similar percentage. As a result, concentrations of ammonia during the 1981 low-flow period were less than 0.20 mg/L as nitrogen at Alexandria, while nitrate concentrations were greater than 1.50 mg/L as nitrogen. Concentrations of ammonia and nitrate at Alexandria were shown to be reasonably predictable by use of a simple dilution model that considers only loading from Chain Bridge and the Blue Plains STP. This apparently is the result of the short residence time through the Chain Bridge-to-Alexandria section of the tidal Potomac River, which precludes significant biological alterations. In marked contrast, the residence times of water parcels in the tidal Potomac River from Alexandria to Quantico, Va., are much greater because of the geometry of the reach. Biological nitrogen-cycle transformation processes affect nitrogen-species concentrations to a greater extent in this reach, especially during summer low-flow periods. Mass-balance calculations that separate changes in transport mass from biological transformations indicatethat the tidal Potomac River was a net sink for all the nitrogen constituents during the 1980 and 1981 summer low-flow periods. However, during the 1980-81 winter period, some ammonia and nitrate was transported out of the tidal Potomac River into the transition zone. Despite the reduced availability of ammonia, nitrogen-15 uptake studies showed that phytoplankton preferred ammonia to nitrate unless ammonia concentrations were less than 0.10 mg/L as nitrogen. Nitrification-rate studies during 1981 using a carbon-14 uptake technique indicate that rates did not vary with sample location, except for one sample from the head of the tidal river, where the rates were much higher. The numbers of Nitrobacter bacteria were highest in samples from near the Blue Plains STP and were greater than the numbers of Nitrosomonas bacteria. The predominance of Nitrobacter bacteria seemed to be associated with advanced wastewater treatment at the Blue Plains STP. Before advanced wastewater treatment, Nitrosomonas were numerically predominant and had the largest numbers near the Blue Plains STP. These results could be due to (1) loading of nitrifying bacteria in the Blue Plains sewage effluent that had been inhibited from further growth by an inhibitory substance or (2) the method used to measure nitrification rates, which measured only the ammonia oxidation stage; it is not possible to reject either mechanism on the basis of the data available. Process models were used in conjunction with mass-balance determinations and individual process studies to estimate rates of processes that were not directly measured. It is estimated that denitrification removed 10 times as much nitrate from the water column during the summer of 1981 as during the summer of 1980. Sedimentation of particulate nitrogen is estimated to be the largest sink for nitrogen from the water column and was approximately equal to the external annual loading of all nitrogen constituents on a daily basis.

Maryland, Virginia↗

Environmental DNA pilot monitoring program for invasive species and biodiversity assessments on Santa Cruz Island: Interim report, September 2025

The U.S. Geological Survey (USGS) and Southern California Coastal Water Research Project supported Channel Islands National Park, The Nature Conservancy’s (TNC) Santa Cruz Island Preserve, and University of California San Diego (UCSD) researchers in using environmental DNA sampling to monitor for invasive Argentine ant ( Linepithema humile ) and to describe spatial biodiversity patterns in a freshwater stream on Santa Cruz Island that is colloquially known as Cañada del Puerto Creek (hydrologic unit code 12 number 180600140201). An eDNA autosampler was deployed May 27–June 02, 2025, which filtered and preserved four 2-L water samples every 12 hours (n = 48 samples). These samples were extracted by USGS and shipped to UCSD for targeted eDNA analyses of Argentine ant. Environmental DNA sampling kits were used to filter and preserve water samples at four sites along the creek spanning ~ 5 km of stream distance. Six 1-L samples were collected at each site May 27–28 and samples were analyzed for eDNA metabarcoding using a comprehensive panel, which encompasses species across the tree of life. In these samples, eDNA from 2,134 unique taxa spanning 30 taxonomic groups (e.g., amoebas, insects, plants) were found. These sampling efforts demonstrated how eDNA autonomous and manual sampling approaches can be applied by National Park Service, TNC, and partners at scale to provide otherwise difficult and expensive to acquire information about biological threats and biodiversity.

California↗

The conservation status of the world’s reptiles

Effective and targeted conservation action requires detailed information about species, their distribution, systematics and ecology as well as the distribution of threat processes which affect them. Knowledge of reptilian diversity remains surprisingly disparate, and innovative means of gaining rapid insight into the status of reptiles are needed in order to highlight urgent conservation cases and inform environmental policy with appropriate biodiversity information in a timely manner. We present the first ever global analysis of extinction risk in reptiles, based on a random representative sample of 1500 species (16% of all currently known species). To our knowledge, our results provide the first analysis of the global conservation status and distribution patterns of reptiles and the threats affecting them, highlighting conservation priorities and knowledge gaps which need to be addressed urgently to ensure the continued survival of the world’s reptiles. Nearly one in five reptilian species are threatened with extinction, with another one in five species classed as Data Deficient. The proportion of threatened reptile species is highest in freshwater environments, tropical regions and on oceanic islands, while data deficiency was highest in tropical areas, such as Central Africa and Southeast Asia, and among fossorial reptiles. Our results emphasise the need for research attention to be focussed on tropical areas which are experiencing the most dramatic rates of habitat loss, on fossorial reptiles for which there is a chronic lack of data, and on certain taxa such as snakes for which extinction risk may currently be underestimated due to lack of population information. Conservation actions specifically need to mitigate the effects of human-induced habitat loss and harvesting, which are the predominant threats to reptiles.

Biological Conservation↗

Evaluation of dissolved carbon dioxide to stimulate emergence of red swamp crayfish Procambarus clarkii (Decapoda: Cambaridae) from infested ponds

Invasive crayfish have adverse effects on habitats and native species. Control of invasive crayfish populations is a major challenge facing natural resource managers. This study evaluated the effectiveness and optimal conditions for the control agent carbon dioxide (CO2) which can be diffused into water to facilitate capture of red swamp crayfish (Procambarus clarkii; RSC). The efficacy of CO2 shows promise in its use for a variety of invasive aquatic species. Here, we evaluate CO2&rsquo;s ability to stimulate movements towards the shoreline and/or induce complete terrestrial emergence from outdoor ponds. Twelve pond trials were conducted using three, 0.02-ha experimental ponds at Auburn University, Alabama, USA. Silt fencing was installed on dry land around the perimeter of each pond with the lower 0.3 m of fencing accordion-folded to provide shelter and a collection point for emerging crayfish. Each pond was stocked with 100 RSC before testing. Experimental treatment ponds were then injected with gaseous CO2 using porous air diffusers, whereas control ponds (C ponds) received no CO2. Multiple water quality parameters were monitored hourly. Three independent treatment scenarios with CO2 diffusion were: crayfish captured at the end of trial only (F: final), crayfish captured hourly (H: hourly), and incorporation of continuous inflow of fresh water at a flow rate of 0.2 L/s into the central catch basin to serve as a refuge with crayfish captured hourly (R: refuge). In control ponds, crayfish were captured at the end of trial only. In F ponds, CO2 diffusion for approximately five hours caused an average of 12% of total crayfish to emerge from the water. However, capture efficiency was increased to an average of 45% of total crayfish by increasing collection frequency to every hour and netting submerged crayfish near the water edge in addition to capturing terrestrially emerged crayfish. Presence of a freshwater inflow reduced capture efficiency in R ponds relative to H ponds. Odds of capturing crayfish improved with increased water temperature, increased CO2 concentration and increased crayfish mass. Based on results, we provide a set of predictive equations as well as interactive calculators to help natural resource managers explore several environmental and treatment-related scenarios that predict changes in capture probability in small research ponds. Carbon dioxide shows promises as a tool to increase capture rate of RSC. It is not likely to be 100% effective by itself, but could be a useful component of an integrated management strategy.

Management of Biological Invasions↗

Strontium isotopes reveal ephemeral streams used for spawning and rearing by an imperiled potamodromous cyprinid--Clear Lake hitch Lavinia exilicauda chi

Identification of habitats responsible for the successful production and recruitment of rare migratory species is a challenge in conservation biology. Here, a tool was developed to assess life stage linkages for the threatened potamodromous cyprinid Clear Lake hitch Lavinia exilicauda chi . Clear Lake hitch undertake migrations from Clear Lake (Lake County, CA, USA) into ephemeral tributary streams for spawning. An aqueous isoscape of strontium isotopic ratios ( 87 Sr/ 86 Sr) was constructed for Clear Lake and its watershed to trace natal origins and migration histories of adult recruits. Aqueous 87 Sr/ 86 Sr differentiated Clear Lake from 8 of 10 key tributaries and clustered into 5 strontium isotope groups (SIGs) with 100% classification success. Otolith 87 Sr/ 86 Sr showed all five groups contributed variably to the population. The age at which juveniles migrated from natal streams to Clear Lake ranged from 11 to 152 days (mean ± s.d., 43 ± 34 days) and was positively associated with the permanency of natal habitat. This information can be used by resource managers to develop conservation actions for Clear Lake hitch. This study demonstrates the utility of strontium isotopes in otoliths as a tool to identify important freshwater habitats occupied over the lifespan of an individual that would otherwise be challenging or impossible to trace with other methods.

California↗

Biochemical composition of three species of unionid mussels after emersion

Freshwater mussels are emersed (exposed to air) during conservation activities such as surveys and relocations. Success of these activities depends upon the ability of mussels to survive emersion and to re-burrow in the substratum. We evaluated the acute sublethal effects of emersion on three species of unionid mussels [pocketbook, Lampsilis cardium (Rafinesque, 1820); pimpleback, Quadrula pustulosa pustulosa (I. Lea, 1831); spike, Elliptio dilatata (Rafinesque, 1820)] by measuring three biochemicals (carbohydrate, lipid, protein) indicative of biochemical function and energy storage. Mussels were acclimated in water at 25A?C and exposed to five air temperatures (15, 20, 25, 35 and 45A?C) for 15, 30 and 60 min. After emersion, mussels were returned to water at 25A?C and observed for 14 days. Samples of mantle tissue were taken after the 14-day postexposure period and analysed for carbohydrate, lipid and protein. Three-way analysis of variance (ANOVA) did not reveal consistent trends in carbohydrate, lipid or protein concentrations due to sex of mussels, duration of emersion, air temperature or their interaction terms that indicated biological compensation to stress. Overall mean carbohydrate concentrations were greatest (range 447a??615 mg/g dry wt) among the species, followed by protein (179a??289 mg/g dry wt) and lipids (26.7a??38.1 mg/g dry wt). These results have positive implications for conducting conservation activities, because emersion over the range of temperatures (15a??35A?C) and durations (15a??60 min) examined did not appear acutely harmful to mussels.

Journal of Molluscan Studies↗

Biochemical composition of three species of unionid mussels after emersion

Freshwater mussels are emersed (exposed to air) during conservation activities such as surveys and relocations. Success of these activities depends upon the ability of mussels to survive emersion and to re-burrow in the substratum. We evaluated the acute sublethal effects of emersion on three species of unionid mussels [pocketbook, Lampsilis cardium (Rafinesque, 1820); pimpleback, Quadrula pustulosa pustulosa (I. Lea, 1831); spike, Elliptio dilatata (Rafinesque, 1820)] by measuring three biochemicals (carbohydrate, lipid, protein) indicative of biochemical function and energy storage. Mussels were acclimated in water at 25??C and exposed to five air temperatures (15, 20, 25, 35 and 45??C) for 15, 30 and 60 min. After emersion, mussels were returned to water at 25??C and observed for 14 days. Samples of mantle tissue were taken after the 14-day postexposure period and analysed for carbohydrate, lipid and protein. Three-way analysis of variance (ANOVA) did not reveal consistent trends in carbohydrate, lipid or protein concentrations due to sex of mussels, duration of emersion, air temperature or their interaction terms that indicated biological compensation to stress. Overall mean carbohydrate concentrations were greatest (range 447-615 mg/g dry wt) among the species, followed by protein (179-289 mg/g dry wt) and lipids (26.7-38.1 mg/g dry wt). These results have positive implications for conducting conservation activities, because emersion over the range of temperatures (15-35??C) and durations (15-60 min) examined did not appear acutely harmful to mussels.

Journal of Molluscan Studies↗

A review of Bayesian belief network models as decision-support tools for wetland conservation: Are water birds potential umbrella taxa?

Creative approaches to identifying umbrella species hold promise for devising effective surrogates of ecological communities or ecosystems. However, mechanistic niche models that predict range or habitat overlap among species may yet lack development. We reviewed literature on taxon-centered Bayesian belief network (BBN) models to explore a novel approach to identify umbrella taxa identifying taxonomic groups that share the largest proportion of habitat requirements (i.e., states of important habitat variables) with other wetland-dependent taxa. We reviewed and compiled published literature to provide a comprehensive and reproducible account of the current understanding of habitat requirements for freshwater, wetland-dependent taxa using BBNs. We found that wetland birds had the highest degree of shared habitat requirements with other taxa, and consequently may be suitable umbrella taxa in freshwater wetlands. Comparing habitat requirements using a BBN approach to build species distribution models, this review also identified taxa that may not benefit from conservation actions targeted at umbrella taxa by identifying taxa with unique habitat requirements not shared with umbrellas. Using a standard node set that accurately and comprehensively represents the ecosystem in question, BBNs could be designed to improve identification of umbrella taxa. In wetlands, expert knowledge about hydrology, geomorphology and soils could add important information regarding physical landscape characteristics relevant to species. Thus, a systems-oriented framework may improve overarching inferences from BBNs and subsequent utility to conservation planning and management.

Biological Conservation↗

What can conservation culturomics tell us about factors driving public interest in aquatic endangered species

The field of “Conservation Culturomics” uses large datasets of freely available web-data to understand cultural patterns and public interests related to conservation topics. We used a popular culturomics tool based on search engine usage to investigate how the U.S. Endangered Species Act listing actions may influence public interest in imperiled freshwater taxa. Yet questions remain regarding the acceptable applications of these data leading us to also evaluate aspects of data quality such as repeatability of timeseries and spatial relative search volume (RSV) data for our search terms. We discovered that low search volume for many freshwater species restricted the number of species that could be analyzed and may signal low public awareness for these species. Low repeatability of timeseries relative search volume data suggests that greater scrutiny and quality control methods may be needed when analyzing these data. For species that had the highest data repeatability, there were positive associations of listing actions and relative search volume for threatened and endangered species. Anomalous peaks of search volume were sometimes but not always related to listing actions or online news stories. Spatial analysis indicated that search volumes were highest in states within species’ native ranges suggesting that people are most interested in species that occur near where they live.

Biological Conservation↗

Paleoceanography of the Gulf of Alaska during the past 15,000 years: Results from diatoms, silicoflagellates, and geochemistry

High-resolution records of diatoms, silicoflagellates, and geochemistry covering the past 15,000 years were studied in three cores from the Gulf of Alaska (GOA). Core EW0408-85JC in an oceanic setting on the Kayak Slope displays a paleoceanographic record similar to that at several locations on the California margin during deglaciation. Biologic productivity as reconstructed using geochemical and microfossil proxies increased abruptly during the Bølling–Alleröd (Bø–Al) warm interval (14.7–12.9 cal ka), declined during the Younger Dryas (YD) cold interval (12.9 to 11.7 cal kyr BP), and rose again during the earliest Holocene. At this site, the record after ~ 11 cal kyr BP is dominated by oceanic diatoms and silicoflagellates, with geochemical proxies displaying more subtle variation. Cores EW0408-66JC in the Yakobi Sea Valley near Cross Sound and EW0408-11JC in the Gulf of Esquibel contain an expanded, composite record along the southeast Alaskan margin. Core 66JC contains a detailed record of the Bø–Al and YD. Diatoms and silicoflagellates indicate that coastal upwelling and biosiliceous productivity were strong during the Bø–Al but declined during the YD. Sea ice-related diatoms increased in abundance during the YD, indicating cooler, but less productive waters. The glacial to biogenic marine sediment transition in core 11JC occurs at 1280 cmbsf (centimeters below sea floor), probably representing rising sea level and deglaciation early in the Bø–Al. Freshwater and sea-ice related diatoms are common in the lower part of the core (Bø–Al and YD), but upwelling-related diatoms and silicoflagellates quickly increased in relative abundance up-core, dominating the record of the past 11,000 years. Low oxygen conditions in the bottom water as reconstructed using geochemical proxies (U and Mo concentration) were most intense between ~ 6.5 and 2.8 cal kyr BP, the beginning of which is coincident with increases in abundance of upwelling-related diatoms. The records from these three cores jointly thus made it possible to reconstruct paleoclimatic and paleoceanographic conditions at high northern Pacific latitudes during the last 15 kyr.

Alaska↗

Assessing arthropod diversity metrics derived from stream environmental DNA: Spatiotemporal variation and paired comparisons with manual sampling

Background Benthic invertebrate (BI) surveys have been widely used to characterize freshwater environmental quality but can be challenging to implement at desired spatial scales and frequency. Environmental DNA (eDNA) allows an alternative BI survey approach, one that can potentially be implemented more rapidly and cheaply than traditional methods. Methods We evaluated eDNA analogs of BI metrics in the Potomac River watershed of the eastern United States. We first compared arthropod diversity detected with primers targeting mitochondrial 16S (mt16S) and cytochrome c oxidase 1 (cox1 or COI) loci to that detected by manual surveys conducted in parallel. We then evaluated spatial and temporal variation in arthropod diversity metrics with repeated sampling in three focal parks. We also investigated technical factors such as filter type used to capture eDNA and PCR inhibition treatment. Results Our results indicate that genus-level assessment of eDNA compositions is achievable at both loci with modest technical noise, although database gaps remain substantial at mt16S for regional taxa. While the specific taxa identified by eDNA did not strongly overlap with paired manual surveys, some metrics derived from eDNA compositions were rank-correlated with previously derived biological indices of environmental quality. Repeated sampling revealed statistical differences between high- and low-quality sites based on taxonomic diversity, functional diversity, and tolerance scores weighted by taxon proportions in transformed counts. We conclude that eDNA compositions are efficient and informative of stream condition. Further development and validation of scoring schemes analogous to commonly used biological indices should allow increased application of the approach to management needs.

PeerJ↗

Proceedings of the Fourth Glacier Bay Science Symposium

Foreword Glacier Bay was established as a National Monument in 1925, in part to protect its unique character and natural beauty, but also to create a natural laboratory to examine evolution of the glacial landscape. Today, Glacier Bay National Park and Preserve is still a place of profound natural beauty and dynamic landscapes. It also remains a focal point for scientific research and includes continuing observations begun decades ago of glacial processes and terrestrial ecosystems. In recent years, research has focused on glacial-marine interactions and ecosystem processes that occur below the surface of the bay. In October 2004, Glacier Bay National Park convened the fourth in a series of science symposiums to provide an opportunity for researchers, managers, interpreters, educators, students and the general public to share knowledge about Glacier Bay. The Fourth Glacier Bay Science Symposium was held in Juneau, Alaska, rather than at the Park, reflecting a desire to maximize attendance and communication among a growing and diverse number of stakeholders interested in science in the park. More than 400 people attended the symposium. Participants provided 46 oral presentations and 41 posters covering a wide array of disciplines including geology, glaciology, oceanography, wildlife and fisheries biology, terrestrial and marine ecology, socio-cultural research and management issues. A panel discussion focused on the importance of connectivity in Glacier Bay research, and keynote speakers (Gary Davis and Terry Chapin) spoke of long-term monitoring and ecological processes. These proceedings include 56 papers from the symposium. A summary of the Glacier Bay Science Plan-itself a subject of a meeting during the symposium and the result of ongoing discussions between scientists and resource managers-also is provided. We hope these proceedings illustrate the diversity of completed and ongoing scientific studies, conducted within the Park. To this end, we invited all presenters to submit brief technical summaries of their work, to capture the gist of their study and its main findings without an overload of details and methodology. We also asked authors to include a few words on the management implications of their work to help bridge the gap between scientists and managers in understanding how specific research questions may translate to management practice. Papers in this volume are laid out by subject matter, from terrestrial and freshwater subjects to glacial-marine geology, to the ecology of marine animals and ending with risk assessment, human impacts and science-management considerations. In summary, we hope the proceedings will serve as a useful reference to completed and ongoing studies in Glacier Bay National Park, and thereby provide park enthusiasts, scientists, and managers with a road map of scientific progress.

Scientific Investigations Report↗