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USGS2008

North American Bird Banding and quantitative population ecology

Early bird-banding programs in North America were developed to provide descriptions of bird migration and movement patterns. This initial interest in description quickly evolved into more quantitative interests in two ways. There was (1) interest in quantifying migration and movement patterns, and (2) rapid recognition that re-observations of marked birds provided information about other parameters relevant to population dynamics. These included survival rate, recruitment rate, and population size. The evolution of methods for estimating population size, survival, recruitment, and movement is reviewed and we show it to be closely tied to bird-banding data. These estimation methods have been used with bird-banding data to draw important inferences about evolutionary ecology, population ecology, and population management. Illustrative examples of such inferences are provided.

Book chapter↗

USGS1993

Using multisource data in global land-cover characterization: concepts, requirements, and methods

Global land-cover data are needed as baseline information for global change research. Multisource data, both coarse resolution satellite data and ancillary data, were used to produce a land-cover characteristics database for the conterqinous United States. Ancillary data, including elevation and ecological region data sets, were critical to the development, refinement, and information content of each class in the database. They contributed essential evidence for labeling and refining land-cover classes where differing types were represented by single spectral-temporal signatures. The characterization process can be expanded to a global effort depending on (1) the availability of global satellite coverage, (2) the quality and availability of ancillary data, and (3) the evolution of more sophisticated data visualization and analysis techniques.

Photogrammetric Engineering and Remote Sensing↗

USGS2025

Enhancing mineral systems exploration through geochronology, thermochronology, and isotope analysis: USGS Geochron and USGS Isotope databases

A mineral systems approach to mineral exploration provides a comprehensive framework for understanding ore deposit formation by examining the geodynamic, magmatic, hydrothermal, and sedimentary processes responsible for mineralization, alteration, and remobilization of economic mineral deposits. Temporal and thermal constraints on ore genesis are crucial for refining mineral system models and guiding predictive exploration strategies. Geochronology and thermochronology offer invaluable insights into the timing and thermal evolution of ore-forming processes, whereas isotopic analyses provide critical information on the source and geochemical history of ore-forming fluids. Combining these methodologies have proven highly effective for mineral exploration in regions like Australia, however, their combined application has been limited in the United States. To apply these tools to mineral systems-based exploration, the U.S. Geological Survey (USGS) has developed two products: (1) The USGS Geochron Database, and (2) the USGS Isotope Database. These databases provide centralized repositories of geo/thermochronological dates and data (Geochron Database) and both radiogenic and stable isotope data (Isotope Database) generated by the USGS and partners over the past decades. Integrating these datasets together and with traditional exploration approaches provides the mineral exploration community with powerful tools for determining the temporal and thermal histories of ore systems and identifying metallogenic source provinces.

Continental United States↗

USGS2025

Foundational uncertainties in terminal Ediacaran chronostratigraphy revealed by high-precision zircon U-Pb geochronology of the Nama Group, Namibia

The Nama Group of southern Namibia and northwestern South Africa hosts the best-dated mixed carbonate-siliciclastic foreland basin succession of the terminal Ediacaran [ca. 551 million years (Ma) ago to <538 Ma] and is key for resolving the chronology of early metazoan evolution. Numerous silicified volcanic tuff interbeds are present, but differing interpretations regarding the fidelity of their ages lead to different regional stratigraphic correlations, especially for the Urusis Formation of the Schwarzrand Subgroup. An expanded record of the Urusis Formation is found in the Swartpunt area of southern Namibia, which has yielded an important metazoan biota. But the succession in this area is preserved as a series of thrusts at the leading edge of the Gariep orogenic belt and zircon U-Pb data show systematic age repetition. We use regional stratigraphic and structural mapping, integrated with carbonate carbon isotope (δ 13 C carb ) chemostratigraphy and high-precision radioisotope U-Pb zircon geochronology from outcrop and recently acquired drill core to develop a temporally calibrated basin-wide depositional model. This integrated dataset either reflects complex zircon reworking, inheritance, or potential analytical biases (Scenario 1) or the presence of a Gariep-related cryptic décollement within the Spitskop Member that has resulted in stratigraphic repetition (Scenario 2). We investigate the evidence for and against both scenarios and consider their implications for stratigraphic and δ 13 C carb correlations between the Swartpunt area and coeval exposures along the Orange River border with South Africa. Given that these issues are in an area that hosts numerous silicified ash beds and extensive exposure, an inability to confidently discount either scenario highlights a level of compounding uncertainty in zircon U-Pb geochronology that must be considered when attempting to build global chronostratigraphic frameworks. Scenario 1 implies that some of the weighted mean ages and Bayesian eruption ages from the Swartpunt area may be >1 Myr older than the depositional age of their respective ash beds when assuming existing stratigraphic correlations. If this scenario is preferred, then a cautious approach would be to consider all weighted mean zircon U-Pb ages from ash beds to reflect maximum depositional ages. Both scenarios support deposition of the Huns Member >540 Ma in the Swartpunt area if the oldest weighted mean age reported here represents a near-depositional age, which has significant implications for the temporal calibration of important terminal Ediacaran ichnofossil assemblages and future cyclostratigraphic studies. Stratigraphic correlations common to both scenarios allow us to temporally calibrate a basin evolution model for the Nama Group. Temporal trends in initial hafnium isotope (εHf) compositions of zircon grains from ash beds throughout the succession may support progressive crustal thickening associated with underplating of the Damara orogenic belt along the northern periphery of the Kalahari craton from ca. 547 Ma to ca. 538 Ma. The compilation of new and published zircon U-Pb ages may also imply that the locus of carbonate platform development migrated from north to south (present co-ordinates), tracking the migration of foredeep subsidence.

Earth-Science Reviews↗

USGS2018

An analytical framework for estimating aquatic species density from environmental DNA

Environmental DNA (eDNA) analysis of water samples is on the brink of becoming a standard monitoring method for aquatic species. This method has improved detection rates over conventional survey methods and thus has demonstrated effectiveness for estimation of site occupancy and species distribution. The frontier of eDNA applications, however, is to infer species density. Building upon previous studies, we present and assess a modeling approach that aims at inferring animal density from eDNA. The modeling combines eDNA and animal count data from a subset of sites to estimate species density (and associated uncertainties) at other sites where only eDNA data are available. As a proof of concept, we first perform a cross-validation study using experimental data on carp in mesocosms. In these data, fish densities are known without error, which allows us to test the performance of the method with known data. We then evaluate the model using field data from a study on a stream salamander species to assess the potential of this method to work in natural settings, where density can never be known with absolute certainty. Two alternative distributions (Normal and Negative Binomial) to model variability in eDNA concentration data are assessed. Assessment based on the proof of concept data (carp) revealed that the Negative Binomial model provided much more accurate estimates than the model based on a Normal distribution, likely because eDNA data tend to be overdispersed. Greater imprecision was found when we applied the method to the field data, but the Negative Binomial model still provided useful density estimates. We call for further model development in this direction, as well as further research targeted at sampling design optimization. It will be important to assess these approaches on a broad range of study systems.

Ecology and Evolution↗

USGS2020

Microbiomes from biorepositories? 16S rRNA bacterial amplicon sequencing of archived and contemporary intestinal samples of wild mammals (Eulipotyphla: Soricidae)

Interest in gut microbial community composition has exploded recently as a result of the increasing ability to characterize these organisms and a growing understanding of their role in host fitness. New technologies, such as next generation amplicon (16S rRNA) sequencing, have enabled identification of bacterial communities from samples of diverse origin (e.g., fecal, skin, genital, environmental, etc.). Relatively little work, however, has explored the feasibility of utilizing historical samples (e.g., museum archived samples) of varying age, quality, and preservation type. Because natural history collections span multiple decades, these biorepositories have the potential to provide fundamental historical baselines to measure and better understand biodiversity on a changing planet. Utilizing even a small proportion of museum specimens could provide a means of sampling past microbial communities, allowing for direct comparison to contemporary communities and more complete understanding of dynamic shifts through time. We examined the feasibility of obtaining 16S rRNA amplicon microbiome data from whole gastrointestinal tracts (GIs) of shrews of varying age and preservation method, including 5 freshly collected shrew GIs immediately fixed in liquid nitrogen (LN2), 10 ten-year old shrew GIs frozen at −20°C (whole animal), and 10 shrews of varying ages (4 from 1968, 1 from 1980, 1 from 2001, 1 from 2004, 1 from 2007, 1 from 2011 and 2 from 2013) fixed and stored whole in 70% ethanol. Not surprisingly, results of 16S rDNA amplicon sequencing reveal significantly different bacterial communities between different preservation techniques and age of samples. Ten-year old frozen samples had bacterial communities most similar to freshly collected (LN2) samples, while the bacterial communities of both were significantly different from the 70% ethanol preserved samples of various ages. Amongst those preserved in 70% ethanol, age of samples also influenced bacterial community composition. Additionally, we compare results of OTU based and ASV based analyses. Looking ahead, field collectors and museums should develop and adopt best practices related to frozen preservation to ensure adequate material for future microbiome investigations.

Frontiers in Ecology and Evolution↗

USGS2023

New indicators of ecological resilience and invasion resistance to support prioritization and management in the sagebrush biome, United States

Ecosystem transformations to altered or novel ecological states are accelerating across the globe. Indicators of ecological resilience to disturbance and resistance to invasion can aid in assessing risks and prioritizing areas for conservation and restoration. The sagebrush biome encompasses parts of 11 western states and is experiencing rapid transformations due to human population growth, invasive species, altered disturbance regimes, and climate change. We built on prior use of static soil moisture and temperature regimes to develop new, ecologically relevant and climate responsive indicators of both resilience and resistance. Our new indicators were based on climate and soil water availability variables derived from process-based ecohydrological models that allow predictions of future conditions. We asked: (1) Which variables best indicate resilience and resistance? (2) What are the relationships among the indicator variables and resilience and resistance categories? (3) How do patterns of resilience and resistance vary across the area? We assembled a large database ( n = 24,045) of vegetation sample plots from regional monitoring programs and derived multiple climate and soil water availability variables for each plot from ecohydrological simulations. We used USDA Natural Resources Conservation Service National Soils Survey Information, Ecological Site Descriptions, and expert knowledge to develop and assign ecological types and resilience and resistance categories to each plot. We used random forest models to derive a set of 19 climate and water availability variables that best predicted resilience and resistance categories. Our models had relatively high multiclass accuracy (80% for resilience; 75% for resistance). Top indicator variables for both resilience and resistance included mean temperature, coldest month temperature, climatic water deficit, and summer and driest month precipitation. Variable relationships and patterns differed among ecoregions but reflected environmental gradients; low resilience and resistance were indicated by warm and dry conditions with high climatic water deficits, and moderately high to high resilience and resistance were characterized by cooler and moister conditions with low climatic water deficits. The new, ecologically-relevant indicators provide information on the vulnerability of resources and likely success of management actions, and can be used to develop new approaches and tools for prioritizing areas for conservation and restoration actions.

Frontiers in Ecology and Evolution↗

USGS2009

Geometry of the Nojima fault at Nojima-Hirabayashi, Japan - II. Microstructures and their implications for permeability and strength

Samples of damage-zone granodiorite and fault core from two drillholes into the active, strike-slip Nojima fault zone display microstructures and alteration features that explain their measured present-day strengths and permeabilities and provide insight on the evolution of these properties in the fault zone. The least deformed damage-zone rocks contain two sets of nearly perpendicular (60–90° angles), roughly vertical fractures that are concentrated in quartz-rich areas, with one set typically dominating over the other. With increasing intensity of deformation, which corresponds generally to increasing proximity to the core, zones of heavily fragmented rock, termed microbreccia zones, develop between prominent fractures of both sets. Granodiorite adjoining intersecting microbreccia zones in the active fault strands has been repeatedly fractured and locally brecciated, accompanied by the generation of millimeter-scale voids that are partly filled with secondary minerals. Minor shear bands overprint some of the heavily deformed areas, and small-scale shear zones form from the pairing of closely spaced shear bands. Strength and permeability measurements were made on core collected from the fault within a year after a major (Kobe) earthquake. Measured strengths of the samples decrease regularly with increasing fracturing and fragmentation, such that the gouge of the fault core and completely brecciated samples from the damage zone are the weakest. Permeability increases with increasing disruption, generally reaching a peak in heavily fractured but still more or less cohesive rock at the scale of the laboratory samples. Complete loss of cohesion, as in the gouge or the interiors of large microbreccia zones, is accompanied by a reduction of permeability by 1-2 orders of magnitude below the peak values. The core samples show abundant evidence of hydrothermal alteration and mineral precipitation. Permeability is thus expected to decrease and strength to increase somewhat in active fault strands between earthquakes, as mineral deposits progressively seal fractures and fill pore spaces.

Pure and Applied Geophysics↗

USGS2020

Mineral deposits of the Mesoproterozoic Midcontinent Rift system in the Lake Superior region – A space and time classification

The Mesoproterozoic Midcontinent Rift System (MRS) of North America hosts a diverse suite of magmatic and hydrothermal mineral deposits in the Lake Superior region where rift rocks are exposed at or near the surface. Historically, hydrothermal deposits, such as Michigan’s native copper deposits and the White Pine sediment-hosted stratiform copper deposit, were major MRS metal producers. On-going exploration for and potential development of copper-nickel sulfide deposits hosted by the Duluth Complex of Minnesota and the opening of the Eagle nickel mine in Michigan indicate an expanding interest in MRS magmatic deposits. MRS hydrothermal and magmatic mineral deposits, many of which are significant past, present, and likely future providers of critical minerals, here are placed into a space and time metallogenic framework. To construct this framework, regional MRS mineral deposits extracted from the U.S. Geological Survey Mineral Resources Data System (MRDS) and the Ontario Ministry of Energy, Northern Development and Mines Mineral Deposit Inventory (MDI) were supplemented by other known and recently recognized mineral deposits described in the literature. All mineral deposits were classified by deposit type, host rock age and type, and estimated timing of mineralization. Deposits were then put into a tectonic evolutionary framework (stages) for the MRS, which shows that deposits formed within discrete spatial and temporal stages of rift evolution.

Lake Superior region↗

USGS2011

Polyphase Neoproterozoic orogenesis within the east Africa- Antarctica orogenic belt in central and northern Madagascar

Our recent geological survey of the basement of central and northern Madagascar allowed us to re-evaluate the evolution of this part of the East Africa-Antarctica Orogen (EAAO). Five crustal domains are recognized, characterized by distinctive lithologies and histories of sedimentation, magmatism, deformation and metamorphism, and separated by tectonic and/or unconformable contacts. Four consist largely of Archaean metamorphic rocks (Antongil, Masora and Antananarivo Cratons, Tsaratanana Complex). The fifth (Bemarivo Belt) comprises Proterozoic meta-igneous rocks. The older rocks were intruded by plutonic suites at c. 1000 Ma, 820-760 Ma, 630-595 Ma and 560-520 Ma. The evolution of the four Archaean domains and their boundaries remains contentious, with two end-member interpretations evaluated: (1) all five crustal domains are separate tectonic elements, juxtaposed along Neoproterozoic sutures and (2) the four Archaean domains are segments of an older Archaean craton, which was sutured against the Bemarivo Belt in the Neoproterozoic. Rodinia fragmented during the early Neoproterozoic with intracratonic rifts that sometimes developed into oceanic basins. Subsequent Mid- Neoproterozoic collision of smaller cratonic blocks was followed by renewed extension and magmatism. The global 'Terminal Pan-African' event (560-490 Ma) finally stitched together the Mid-Neoproterozoic cratons to form Gondwana. ?? The Geological Society of London 2011.

Geological Society Special Publication↗

USGS2015

Assessing the vegetation condition impacts of the 2011 drought across the U.S. southern Great Plains using the vegetation drought response index (VegDRI)

The vegetation drought response index (VegDRI), which combines traditional climate- and satellite-based approaches for assessing vegetation conditions, offers new insights into assessing the impacts of drought from local to regional scales. In 2011, the U.S. southern Great Plains, which includes Texas, Oklahoma, and New Mexico, was plagued by moderate to extreme drought that was intensified by an extended period of record-breaking heat. The 2011 drought presented an ideal case study to evaluate the performance of VegDRI in characterizing developing drought conditions. Assessment of the spatiotemporal drought patterns represented in the VegDRI maps showed that the severity and patterns of the drought across the region corresponded well to the record warm temperatures and much-below-normal precipitation reported by the National Climatic Data Center and the sectoral drought impacts documented by the Drought Impact Reporter (DIR). VegDRI values and maps also showed the evolution of the drought signal before the Las Conchas Fire (the largest fire in New Mexico’s history). Reports in the DIR indicated that the 2011 drought had major adverse impacts on most rangeland and pastures in Texas and Oklahoma, resulting in total direct losses of more than $12 billion associated with crop, livestock, and timber production. These severe impacts on vegetation were depicted by the VegDRI at subcounty, state, and regional levels. This study indicates that the VegDRI maps can be used with traditional drought indicators and other in situ measures to help producers and government officials with various management decisions, such as justifying disaster assistance, assessing fire risk, and identifying locations to move livestock for grazing.

Journal of Applied Meteorology and Climatology↗

USGS2020

Conservation genomics in a changing arctic

Although logistically challenging to study, the Arctic is a bellwether for global change and is becoming a model for questions pertinent to the persistence of biodiversity. Disruption of Arctic ecosystems is accelerating, with impacts ranging from mixing of biotic communities to individual behavioral responses. Understanding these changes is crucial for conservation and sustainable economic development. Genomic approaches are providing transformative insights into biotic responses to environmental change, but have seen limited application in the Arctic due to a series of limitations. To meet the promise of genome analyses, we urge rigorous development of biorepositories from high latitudes to provide essential libraries to improve the conservation, monitoring, and management of Arctic ecosystems through genomic approaches.

Trends in Ecology and Evolution↗

USGS2014

Processes of arroyo filling in northern New Mexico, USA

We documented arroyo evolution at the tree, trench, and arroyo scales along the lower Rio Puerco and Chaco Wash in northern New Mexico, USA. We excavated 29 buried living woody plants and used burial signatures in their annual rings to date stratigraphy in four trenches across the arroyos. Then, we reconstructed the history of arroyo evolution by combining trench data with arroyo-scale information from aerial imagery, light detection and ranging (LiDAR), longitudinal profiles, and repeat surveys of cross sections. Burial signatures in annual rings of salt cedar and willow dated sedimentary beds greater than 30 cm thick with annual precision. Along both arroyos, incision occurred until the 1930s in association with extreme high flows, and subsequent filling involved vegetation development, channel narrowing, increased sinuosity, and finally vertical aggradation. A strongly depositional sediment transport regime interacted with floodplain shrubs to produce a characteristic narrow, trapezoidal channel. The 55 km study reach along the Rio Puerco demonstrated upstream progression of arroyo widening and filling, but not of arroyo incision, channel narrowing, or floodplain vegetation development. We conclude that the occurrence of upstream progression within large basins like the Rio Puerco makes precise synchrony across basins impossible. Arroyo wall retreat is now mostly limited to locations where meanders impinge on the arroyo wall, forming hairpin bends, for which entry to and exit from the wall are stationary. Average annual sediment storage within the Rio Puerco study reach between 1955 and 2005 was 4.8 × 10 5 t/yr, 16% of the average annual suspended sediment yield, and 24% of the long-term bedrock denudation rate. At this rate, the arroyo would fill in 310 yr.

New Mexico↗

USGS2025

Fine-resolution satellite remote sensing improves spatially distributed snow modeling to near real time

Given the highly variable distribution of seasonal snowpacks in complex mountainous environments, the accurate snow modeling of basin-wide snow water equivalent (SWE) requires a spatially distributed approach at a sufficiently fine grid resolution (<500 m) to account for the important processes in the seasonal evolution of a snowpack (e.g., wind redistribution of snow to resolve patchy snow cover in an alpine zone). However, even well-validated snow evolution models, such as SnowModel, are prone to errors when key model inputs, such as the precipitation and wind speed and direction, are inaccurate or only available at coarse spatial resolutions. Incorporating fine-spatial-resolution remotely sensed snow-covered area (SCA) information into spatially distributed snow modeling has the potential to refine and improve fine-resolution snow water equivalent (SWE) estimates. This study developed 30 m resolution SnowModel simulations across the Big Thompson River, Fraser River, Three Lakes, and Willow Creek Basins, a total area of 4212 km 2 in Colorado, for the water years 2000–2023, and evaluated the incorporation of a Moderate Resolution Imaging Spectroradiometer (MODIS) and Landsat SCA datasets into the model’s development and calibration. The SnowModel was calibrated spatially to the Landsat mean annual snow persistence (SP) and temporally to the MODIS mean basin SCA using a multi-objective calibration procedure executed using Latin hypercube sampling and a stepwise calibration process. The Landsat mean annual SP was also used to further optimize the SnowModel simulations through the development of a spatially variable precipitation correction field. The evaluations of the SnowModel simulations using the Airborne Snow Observatories’ (ASO’s) light detection and ranging (lidar)-derived SWE estimates show that the versions of the SnowModel calibrated to the remotely sensed SCA had an improved performance (mean error ranging from −28 mm to −6 mm) compared with the baseline simulations (mean error ranging from 69 mm to 86 mm), and comparable spatial patterns to those of the ASO, especially at the highest elevations. Furthermore, this study’s results highlight how a regularly updated 30 m resolution SCA could be used to further improve the calibrated SnowModel simulations to near real time (latency of 5 days or less).

Colorado↗

USGS2024

Ceanothus: Taxonomic patterns in life history responses to fire

Premise: Ceanothus (Rhamnaceae) is a large genus of shrubs that dominate California chaparral and are resilient to fires. Persistence is ensured by resprouting and/or seedling recruitment from dormant seed banks. Some species do both and others, the obligate seeders, are entirely dependent on seedling recruitment. The distribution of these two modes within the genus is poorly documented. Methods: We used all available publications that document species responses to fire and filled most gaps in the literature based on extensive field studies of more than 60 recent wildfires in California. Results: The genus is divided into two subgenera, Ceanothus and Cerastes . Ceanothus is widely considered to comprise mostly resprouting species and Cerastes to consist of only obligate seeders. The subgenus Ceanothus includes resprouting species throughout their range from the eastern United States and Midwest to western United States. Within the California Floristic Province (CFP), a few species are unique in producing massive lignotubers that develop from repeated fires; however, within the CFP, the majority of species in this subgenus do not resprout and are obligate seeders. Two have disjunct subspecies that are facultative seeders or obligate seeders. Conclusions: Previously, speciation in this genus was contended to have occurred in the late Miocene within the CFP. The syndrome of obligate seeding is most strongly represented in this region, and we hypothesize that evolution of this syndrome was a response to increased predictability of fire driven by the Mediterranean climate and the long interval between fires.

California↗

USGS2005

Balancing the generation and elimination of reactive oxygen species

Fossil records suggest that bacteria developed the ability to photosynthesize ≈3,500 million years ago (mya), initiating a very slow accumulation of atmospheric oxygen ( 1 ). Recent geochemical models suggest that atmospheric oxygen did not accumulate to levels conducive for aerobic life until 500–1,000 mya ( 2 , 3 ). The oxygenation of Earth's atmosphere resulted in the emergence of aerobic organisms followed by a great diversification of biological species and the eventual evolution of humans.

PNAS↗

USGS1998

Evolution of cutoffs across meander necks in Powder River, Montana, USA

Over a period of several decades, gullies have been observed in various stages of forming, growing and completing the cutoff of meander necks in Powder River. During one episode of overbank flow, water flowing over the down-stream bank of the neck forms a headctu. The headcut migrates up-valley, forming a gully in its wake, until it has traversed the entire neck, cutting off the meander. The river then follows the course of the gully, which is subsequently enlarged as the river develops its new channel. The complete process usually requires several episodes of high water: in only one of the five cases described herein was a meander cutoff initiated and completed during a single large flood.

Earth Surface Processes and Landforms↗

USGS1991

Martian paleolakes and waterways: Exobiological implications

The problems of how warm and wet Mars once was and when climate transitions may have occurred are not well understood. Mars may have had an early environment similar to Earth's that was conductive to the ermergence of life. In addition, increasing geologic evidence indicates that water, upon which terrestrial life depends, has been present on Mars throughout its history. This evidence suggests that life could have developed not only on early Mars but also over longer periods of time in longer lasting, more clement local environments. Indications of past or present life most likely would be found in areas where liquid water existed in sufficient quantities to provide for the needs of biological systems. We suggest that paleolakes may have provided such environments. Unlike the case on Earth, this record of the origin and evolution of life has probably not been erased by extensive deformation of the Martian surface. Our work has identified eleven prospective areas where large lacustrine basins may once have existed. These areas are important for future biological, geological, and climatological investigations. ?? 1991 Kluwer Academic Publishers.

Origins of Life and Evolution of the Biosphere↗