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At least 595 records · Page 33Linked to original sources
USGS2010

Rangewide phylogeography and landscape genetics of the Western U.S. endemic frog Rana boylii (Ranidae): Implications for the conservation of frogs and rivers

Genetic data are increasingly being used in conservation planning for declining species. We sampled both the ecological and distributional limits of the foothill yellow-legged frog, Rana boylii to characterize mitochondrial DNA (mtDNA) variation in this declining, riverine amphibian. We evaluated 1525 base pairs (bp) of cytochrome b and ND2 fragments for 77 individuals from 34 localities using phylogenetic and population genetic analyses. We constructed gene trees using maximum likelihood and Bayesian inference, and quantified genetic variance (using AMOVA and partial Mantel tests) within and among hydrologic regions and river basins. Several moderately supported, geographically-cohesive mtDNA clades were recovered for R. boylii. While genetic variation was low among populations in the largest, most inclusive clade, samples from localities at the edges of the geographic range demonstrated substantial genetic divergence from each other and from more central populations. Hydrologic regions and river basins, which represent likely dispersal corridors for R. boylii, accounted for significant levels of genetic variation. These results suggest that both rivers and larger hydrologic and geographic regions should be used in conservation planning for R. boylii. ?? 2010 US Government.

Conservation Genetics↗
USGS2013

Are captive tortoises a reservoir for conservation? An assessment of genealogical affiliation of captive Gopherus agassizii to local, wild populations

The conservation of tortoises poses a unique situation because several threatened species are commonly kept as pets within their native ranges. Thus, there is potential for captive populations to be a reservoir for repatriation efforts. We assess the utility of captive populations of the threatened Agassiz’s desert tortoise ( Gopherus agassizii ) for recovery efforts based on genetic affinity to local areas. We collected samples from 130 captive desert tortoises from three desert communities: two in California (Ridgecrest and Joshua Tree) and the Desert Tortoise Conservation Center (Las Vegas) in Nevada. We tested all samples for 25 short tandem repeats and sequenced 1,109 bp of the mitochondrial genome. We compared captive genotypes to a database of 1,258 Gopherus samples, including 657 wild caught G. agassizii spanning the full range of the species. We conducted population assignment tests to determine the genetic origins of the captive individuals. For our total sample set, only 44 % of captive individuals were assigned to local populations based on genetic units derived from the reference database. One individual from Joshua Tree, California, was identified as being a Morafka’s desert tortoise, G. morafkai , a cryptic species which is not native to the Mojave Desert. Our data suggest that captive desert tortoises kept within the native range of G. agassizii cannot be presumed to have a genealogical affiliation to wild tortoises in their geographic proximity. Precautions should be taken before considering the release of captive tortoises into the wild as a management tool for recovery.

Conservation Genetics↗
USGS2023

Revisiting conservation units for the endangered mountain yellow-legged frog species complex (Rana muscosa, Rana sierrae) using multiple genomic methods

Insights from conservation genomics have dramatically improved recovery plans for numerous endangered species. However, most taxa have yet to benefit from the full application of genomic technologies. The mountain yellow-legged frog species complex, Rana muscosa and Rana sierrae, inhabits the Sierra Nevada mountains and Transverse/Peninsular Ranges of California and Nevada. Both species have declined precipitously throughout their historical distributions. Conservation management plans outline extensive ongoing recovery efforts but are still based on the genetic structure determined primarily using a single mitochondrial sequence. Our study used two different sequencing strategies – amplicon sequencing and exome capture – to refine our understanding of the population genetics of these imperiled amphibians. We used buccal swabs, museum tissue samples, and archived skin swabs to genotype frog populations across their range. Using the amplicon sequencing and exome capture datasets separately and combined, we document five major genetic clusters. Notably, we found evidence supporting previous species boundaries within Kings Canyon National Park with some exceptions at individual sites. Though we see evidence of genetic clustering, especially in the R. muscosa clade, we also found evidence of some admixture across cluster boundaries in the R. sierrae clade, suggesting a stepping-stone model of population structure. We also find that the southern R. muscosa cluster had large runs of homozygosity and the lowest overall heterozygosity of any of the clusters, consistent with previous reports of marked declines in this area. Overall, our results clarify management unit designations across the range of an endangered species and highlight the importance of sampling the entire range of a species, even when collecting genome-scale data.

California↗
USGS2010

Multi-species occurrence models to evaluate the effects of conservation and management actions

Conservation and management actions often have direct and indirect effects on a wide range of species. As such, it is important to evaluate the impacts that such actions may have on both target and non-target species within a region. Understanding how species richness and composition differ as a result of management treatments can help determine potential ecological consequences. Yet it is difficult to estimate richness because traditional sampling approaches detect species at variable rates and some species are never observed. We present a framework for assessing management actions on biodiversity using a multi-species hierarchical model that estimates individual species occurrences, while accounting for imperfect detection of species. Our model incorporates species-specific responses to management treatments and local vegetation characteristics and a hierarchical component that links species at a community-level. This allows for comprehensive inferences on the whole community or on assemblages of interest. Compared to traditional species models, occurrence estimates are improved for all species, even for those that are rarely observed, resulting in more precise estimates of species richness (including species that were unobserved during sampling). We demonstrate the utility of this approach for conservation through an analysis comparing bird communities in two geographically similar study areas: one in which white-tailed deer (Odocoileus virginianus) densities have been regulated through hunting and one in which deer densities have gone unregulated. Although our results indicate that species and assemblage richness were similar in the two study areas, point-level richness was significantly influenced by local vegetation characteristics, a result that would have been underestimated had we not accounted for variability in species detection.

Biological Conservation↗
USGS2012

Common coastal foraging areas for loggerheads in the Gulf of Mexico: Opportunities for marine conservation

Designing conservation strategies that protect wide-ranging marine species is a significant challenge, but integrating regional telemetry datasets and synthesizing modeled movements and behavior offer promise for uncovering distinct at-sea areas that are important habitats for imperiled marine species. Movement paths of 10 satellite-tracked female loggerheads ( Caretta caretta ) from three separate subpopulations in the Gulf of Mexico, USA, revealed migration to discrete foraging sites in two common areas at-sea in 2008, 2009, and 2010. Foraging sites were 102–904 km away from nesting and tagging sites, and located off southwest Florida and the northern Yucatan Peninsula, Mexico. Within 3–35 days, turtles migrated to foraging sites where they all displayed high site fidelity over time. Core-use foraging areas were 13.0–335.2 km 2 in size, in water <50 m deep, within a mean distance to nearest coastline of 58.5 km, and in areas of relatively high net primary productivity. The existence of shared regional foraging sites highlights an opportunity for marine conservation strategies to protect important at-sea habitats for these imperiled marine turtles, in both USA and international waters. Until now, knowledge of important at-sea foraging areas for adult loggerheads in the Gulf of Mexico has been limited. To better understand the spatial distribution of marine turtles that have complex life-histories, we propose further integration of disparate tracking data-sets at the oceanic scale along with modeling of movements to identify critical at-sea foraging habitats where individuals may be resident during non-nesting periods.

Florida↗
USGS2017

Ecosystem implications of conserving endemic versus eradicating introduced large herbivores in the Galapagos Archipelago

Restoration of damaged ecosystems through invasive species removal and native species conservation is an increasingly common practice in biodiversity conservation. Estimating the degree of ecosystem response attributable specifically to eradication of exotic herbivores versus restoration of native herbivores is often difficult and is complicated by concurrent temporal changes in other factors, especially climate. We investigated the interactive impacts of native mega-herbivores (giant tortoises) and the eradication of large alien herbivores (goats) on vegetation productivity across the Galapagos Archipelago. We examined archipelago-wide patterns of Normalized Difference Vegetation Index (NDVI) as a proxy for vegetation productivity between 2001 and 2015 and evaluated how goat and historical and current tortoise occurrence influenced productivity. We used a breakpoint analysis to detect change in trends in productivity from five targeted areas following goat eradication. We found a positive association between tortoise occurrence and vegetation productivity and a negative association with goat occurrence. We also documented an increase in plant productivity following goat removal with recovery higher in moister regions than in arid region, potentially indicating an alternate stable state has been created in the latter. Climate variation also contributed to the detected improvement in productivity following goat eradication, sometimes obscuring the effect of eradication but more usually magnifying it by up to 300%. Our work offers perspectives regarding the effectiveness and outcomes of eradicating introduced herbivores and re-introducing native herbivores, and the merits of staging them simultaneously in order to restore critical ecosystem processes such as vegetation productivity.

Galapagos Islands↗
USGS2018

A review of Bayesian belief network models as decision-support tools for wetland conservation: Are water birds potential umbrella taxa?

Creative approaches to identifying umbrella species hold promise for devising effective surrogates of ecological communities or ecosystems. However, mechanistic niche models that predict range or habitat overlap among species may yet lack development. We reviewed literature on taxon-centered Bayesian belief network (BBN) models to explore a novel approach to identify umbrella taxa identifying taxonomic groups that share the largest proportion of habitat requirements (i.e., states of important habitat variables) with other wetland-dependent taxa. We reviewed and compiled published literature to provide a comprehensive and reproducible account of the current understanding of habitat requirements for freshwater, wetland-dependent taxa using BBNs. We found that wetland birds had the highest degree of shared habitat requirements with other taxa, and consequently may be suitable umbrella taxa in freshwater wetlands. Comparing habitat requirements using a BBN approach to build species distribution models, this review also identified taxa that may not benefit from conservation actions targeted at umbrella taxa by identifying taxa with unique habitat requirements not shared with umbrellas. Using a standard node set that accurately and comprehensively represents the ecosystem in question, BBNs could be designed to improve identification of umbrella taxa. In wetlands, expert knowledge about hydrology, geomorphology and soils could add important information regarding physical landscape characteristics relevant to species. Thus, a systems-oriented framework may improve overarching inferences from BBNs and subsequent utility to conservation planning and management.

Biological Conservation↗
USGS2019

Pathways to strategic communication for biodiversity conservation: Response to “Hearing ourselves (and acting in consequence): A commentary on Bekessy et al. from a bird-handling environmental education perspective”

Central to discussions about the merits of ecosystem services as a communication strategy is the degree to which it represents a strategic and effective approach to advance biodiversity conservation. There is increasing recognition that many conservation communication efforts can be more strategic (e.g. Kusmanoff et al. 2016).

Biological Conservation↗
USGS2019

Conservation research across scales in a national program: How to be relevant to local management yet general at the same time

Successfully addressing complex conservation problems requires attention to pattern and process at multiple spatial scales. This is challenging from a logistical and organizational perspective. In response to indications of worldwide declines in amphibian populations, the Amphibian Research and Monitoring Initiative (ARMI) of the United States Geological Survey was established in 2000. This national program is unique in its structure, organization, and success in integrating information at multiple scales. ARMI works under the principle that a good study design is tailored to specific questions, but stipulates the use of methods that result in unbiased parameter estimates (e.g., occupancy). This allows studies to be designed to address local questions but also to produce data that can easily be scaled up to accomplish the objectives of a broad-scale monitoring program. Here we describe how the implementation of the Amphibian Research and Monitoring Initiative results in research that is applicable across scales – global, in contributing to the understanding of amphibian decline phenomena; continental, in synthesizing local data to understand large-scale drivers; regional, by characterizing threats and assessing status of species at the range scale; and local, by working with National Park, Wildlife Refuge, and other Federal and State land managers to identify research needs and serve conservation-relevant research results to inform management decisions.

Biological Conservation↗
USGS2019

Overview of emerging amphibian pathogens and modeling advances for conservation-related decisions

One of the leading causes of global amphibian decline is emerging infectious disease. We summarize the disease ecology of four major emerging amphibian infectious agents: chytrids, ranaviruses, trematodes, and Perkinsea. We focus on recently developed quantitative advances that build on well-established ecological theories and aid in studying epizootic and enzootic disease dynamics. For example, we identify ecological and evolutionary selective forces that determine disease outcomes and transmission pathways by borrowing ideas from population and community ecology theory. We outline three topics of general interest in disease ecology: (i) the relationship between biodiversity and disease risk, (ii) individual, species, or environmental transmission heterogeneity, and (iii) pathogen coinfections. Finally, we identify specific knowledge gaps impeding the success of conservation-related decisions for disease mitigation and the future of amphibian conservation success.

Biological Conservation↗
USGS2020

A global parasite conservation plan

Found throughout the tree of life and in every ecosystem, parasites are some of the most diverse, ecologically important animals on Earth—but in almost all cases, the least protected by wildlife or ecosystem conservation efforts. For decades, ecologists have been calling for research to understand parasites' important ecological role, and increasingly, to protect as many species from extinction as possible. However, most conservationists still work within priority systems for funding and effort that exclude or ignore parasites, or treat parasites as an obstacle to be overcome. Our working group identified 12 goals for the next decade that could advance parasite biodiversity conservation through an ambitious mix of research, advocacy, and management.

Biological Conservation↗
USGS2022

The potential of semi-structured citizen science data as a supplement for conservation decision-making: Validating the performance of eBird against targeted avian monitoring efforts

Methods are being developed to capitalize on citizen science data for research and monitoring, but these data are rarely used within established decision-making frameworks of wildlife agencies. Citizen science data are often collected at higher resolution and extent than targeted monitoring programs, and may provide complementary information. Here, we demonstrate that carefully filtered semi-structured citizen science observations, when paired with targeted survey data, can produce ecological predictions at higher resolution and extent than targeted surveys alone, and both datasets can represent complementary aspects of species' ecology. We present case studies demonstrating how citizen science data can enhance or supplement decision-making of government and conservation organizations. First, we show how the continuous spatial coverage of citizen science projects, when coupled with targeted surveys, can improve estimates of metrics used by the U.S. Fish and Wildlife Service in regulatory processes to estimate population size, and inform take limits of federally managed species nationwide. Second, we show that the spatial coverage of citizen science accommodates dynamic avian space use patterns during key times of the year, relative to standardized monitoring protocols carried out by the Illinois Natural History Survey. Lastly, we demonstrate that citizen science information can replicate estimates of migratory chronologies for the Illinois Natural History Survey and the U.S. Fish and Wildlife Service for some waterfowl species, and in some contexts can supplement missing data on abundance. These findings illustrate the value of integrating validated information from semi-structured citizen science into the current evidence base used to justify, inform, and evaluate conservation decision-making.

California, Illinois, Iowa, Missouri↗
USGS2023

Mismatch between conservation status and climate change sensitivity leaves some anurans in the United States unprotected

Species vulnerable to climate change face increased extinction risk, but many sensitive species may be overlooked due to limited data and exclusion from vulnerability assessments. Intrinsic sensitivity, or the inherent risk of species to environmental change due to biological factors, can be assessed with widely available data and may address gaps in multispecies vulnerability assessments. Species that exist in few places (geographically rare) and in fewer climates (smaller realized climate niche breadth) have high intrinsic sensitivity to environmental change. Using point occurrences, we systematically evaluated intrinsic sensitivity based on geographic rarity and realized climate niche breadth for 90 species of frogs and toads native to the United States using over 140 000 occurrence records. To compare sensitivity to perceived extinction risk, we compared intrinsic sensitivity to conservation status at state, federal, and international levels. We found no relationship between intrinsic sensitivity and federal or state conservation status, with some intrinsically sensitive species (i.e., those with small areas of occurrence and narrow climate specificity) not listed as at-risk at any level. Intrinsic sensitivity analysis can serve as an early warning system for species that may be currently at-risk and overlooked.

Biological Conservation↗
USGS2024

What can conservation culturomics tell us about factors driving public interest in aquatic endangered species

The field of “Conservation Culturomics” uses large datasets of freely available web-data to understand cultural patterns and public interests related to conservation topics. We used a popular culturomics tool based on search engine usage to investigate how the U.S. Endangered Species Act listing actions may influence public interest in imperiled freshwater taxa. Yet questions remain regarding the acceptable applications of these data leading us to also evaluate aspects of data quality such as repeatability of timeseries and spatial relative search volume (RSV) data for our search terms. We discovered that low search volume for many freshwater species restricted the number of species that could be analyzed and may signal low public awareness for these species. Low repeatability of timeseries relative search volume data suggests that greater scrutiny and quality control methods may be needed when analyzing these data. For species that had the highest data repeatability, there were positive associations of listing actions and relative search volume for threatened and endangered species. Anomalous peaks of search volume were sometimes but not always related to listing actions or online news stories. Spatial analysis indicated that search volumes were highest in states within species’ native ranges suggesting that people are most interested in species that occur near where they live.

Biological Conservation↗
USGS2026

Long lives, short futures: Freshwater turtle and tortoise imports to the United States highlight global trade and conservation challenges

Global trade of freshwater turtles and tortoises presents substantial conservation, biosecurity, and regulatory challenges, particularly for long-lived species that are already highly imperiled. While the United States has historically played a key role in supplying the international chelonian trade, investigations into its role as an importer remain limited. We used import data from the U.S. Fish and Wildlife Service Law Enforcement Management Information System (LEMIS) between 2000 and 2022 to evaluate the trade of freshwater turtles and tortoises. Over 2.5 million individuals were imported into the United States during this period, comprising 172 species that are likely imported for the pet trade, food, and traditional medicine markets. Reported annual imports for freshwater turtles increased until approximately 2013 and decreased thereafter, whereas reported annual imports for tortoises have remained relatively constant. Two species, Chinese softshell turtles ( Pelodiscus sinensis ) and Horsfield's tortoises ( Testudo horsfieldii ) represent 62.9% of all imports. Imported species were largely classified as Vulnerable, Endangered, or Critically Endangered by the IUCN Red List, yet the conservation status of a concerning number of species ( n = 45; 26.2%) has not been evaluated. Many imports appear to be sourced from wild populations (28.3% of freshwater turtles, 71.3% of tortoises); however, captive-sourced imports increased significantly over time across both groups. Import volumes raise concerns regarding the sustainability of freshwater turtle and tortoise trade, the potential for invasive species establishment, and disease spread. Our results highlight the need for updated IUCN assessments, verification of trade records, and strengthening of biosecurity screening at U.S. ports of entry.

Biological Conservation↗
USGS2020

Movements and habitat use of loons for assessment of conservation buffer zones in the Arctic Coastal Plain of northern Alaska

Oil and gas development in the Arctic Coastal Plain, Alaska, may pose threats to wildlife. Management guidelines within the National Petroleum Reserve-Alaska dictate buffer zones for coastal wildlife habitat and for breeding and foraging sites of yellow-billed loons (YBLOs; Gavia adamsii), a species of conservation concern. However, few data exist to assess the value of these buffer zones for YBLOs or for sympatrically breeding red-throated loons (RTLOs; G. stellata) and Pacific loons (PALOs; G. pacifica). We evaluated movements of these loons on the Arctic Coastal Plain to understand: 1) seasonal timing; 2) marine habitat use; and 3) spatial characteristics of breeding home ranges. We then used those findings to evaluate current management strategies in the context of loon biology. Compared to RTLOs and PALOs, YBLOs nested on larger lakes, stayed on them longer, had larger home ranges, but less frequently used the marine environment in summer. During autumn, YBLOs and PALOs were located farther from shore than during spring or summer, whereas RTLOs used the marine environment similarly during all three seasons. Management buffers established for YBLO nesting areas corresponded well with nest site space use of all three species, suggesting cross-taxa applicability of current management guidelines for nesting habitat. However, the majority of loon locations on the Arctic Coastal Plain were outside of coastal buffer zones established to protect fish and wildlife habitat within the National Petroleum Reserve-Alaska. These findings can inform assessment of conservation buffer zones to mitigate anthropogenic disturbance to loons in Alaska.

Alaska↗
USGS2003

Effect of different sampling schemes on the spatial placement of conservation reserves in Utah, USA

We evaluated the effect of three different sampling schemes used to organize spatially explicit biological information had on the spatial placement of conservation reserves in Utah, USA. The three sampling schemes consisted of a hexagon representation developed by the EPA/EMAP program (statistical basis), watershed boundaries (ecological), and the current county boundaries of Utah (socio-political). Four decision criteria were used to estimate effects, including amount of area, length of edge, lowest number of contiguous reserves, and greatest number of terrestrial vertebrate species covered. A fifth evaluation criterion was the effect each sampling scheme had on the ability of the modeled conservation reserves to cover the six major ecoregions found in Utah. Of the three sampling schemes, county boundaries covered the greatest number of species, but also created the longest length of edge and greatest number of reserves. Watersheds maximized species coverage using the least amount of area. Hexagons and watersheds provide the least amount of edge and fewest number of reserves. Although there were differences in area, edge and number of reserves among the sampling schemes, all three schemes covered all the major ecoregions in Utah and their inclusive biodiversity. ?? 2003 Elsevier Science Ltd. All rights reserved.

Biological Conservation↗
USGS2016

Assessing conservation tools for an at-risk shorebird: Feasibility of headstarting for American Oystercatchers Haematopus palliatus

Management of threatened and endangered populations of wildlife increasingly relies upon active intervention such as predator control, habitat manipulation, and ex situ breeding or care. One tool that has received consideration for the management of declining or threatened avian populations is headstarting, or the artificial incubation of eggs and subsequent placement of newly hatched chicks in original or foster nests. We assessed the feasibility of implementing a headstarting program for the American Oystercatcher Haematopus palliatus , a species of high conservation concern in the eastern USA. Annual productivity is often low and lost during incubation, suggesting artificial incubation could enhance annual productivity. We used a control-impact approach to assign nests as either control or headstart and measured daily survival rate, success of parents accepting headstarted chicks, attendance patterns and behaviours of parents, and chick survival. We also implemented a transparent scoring process to rate the success of each step and the overall program. Daily survival rates of nests were significantly higher at headstart compared to control nests, and parents continued to incubate when eggs were well secured at nest sites. Attendance patterns and behaviour did not differ between headstart and control parents, and parents readily accepted healthy chicks whether they were returned to original or foster nests. Chick survival and subsequently annual productivity were, however, not higher at headstart compared to control nests suggesting that although we were able to enhance nest survival, low chick survival was still limiting annual productivity. Ultimately, headstarting may be most appropriate for American Oystercatchers where productivity is lost primarily to flooding, predation, or disturbance during the incubation stage but not during the chick-rearing stage. If, for example, high rates of nest loss are due to predators that also may prey upon chicks, then headstarting may not be an effective conservation tool.

Bird Conservation International↗