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Groundwater quality in the Colorado River basins, California

Groundwater provides more than 40 percent of California’s drinking water. To protect this vital resource, the State of California created the Groundwater Ambient Monitoring and Assessment (GAMA) Program. The Priority Basin Project of the GAMA Program provides a comprehensive assessment of the State’s groundwater quality and increases public access to groundwater-quality information. Four groundwater basins along the Colorado River make up one of the study areas being evaluated. The Colorado River study area is approximately 884 square miles (2,290 square kilometers) and includes the Needles, Palo Verde Mesa, Palo Verde Valley, and Yuma groundwater basins (California Department of Water Resources, 2003). The Colorado River study area has an arid climate and is part of the Sonoran Desert. Average annual rainfall is about 3 inches (8 centimeters). Land use in the study area is approximately 47 percent (%) natural (mostly shrubland), 47% agricultural, and 6% urban. The primary crops are pasture and hay. The largest urban area is the city of Blythe (2010 population of 21,000). Groundwater in these basins is used for public and domestic water supply and for irrigation. The main water-bearing units are gravel, sand, silt, and clay deposited by the Colorado River or derived from surrounding mountains. The primary aquifers in the Colorado River study area are defined as those parts of the aquifers corresponding to the perforated intervals of wells listed in the California Department of Public Health database. Public-supply wells in the Colorado River basins are completed to depths between 230 and 460 feet (70 to 140 meters), consist of solid casing from the land surface to a depth of 130 of 390 feet (39 to 119 meters), and are screened or perforated below the solid casing. The main source of recharge to the groundwater systems in the Needles, Palo Verde Mesa, and Palo Verde Valley basins is the Colorado River; in the Yuma basin, the main source of recharge is from subsurface flow from the groundwater basins to the west. Groundwater discharge is primarily to pumping wells, evapotranspiration, and, locally, to the Colorado River.

Arizona, California↗

Three-dimensional imaging, change detection, and stability assessment during the centerline trench levee seepage experiment using terrestrial light detection and ranging technology, Twitchell Island, California, 2012

A full scale field seepage test was conducted on a north-south trending levee segment of a now bypassed old meander belt on Twitchell Island, California, to understand the effects of live and decaying root systems on levee seepage and slope stability. The field test in May 2012 was centered on a north-south trench with two segments: a shorter control segment and a longer seepage test segment. The complete length of the trench area measured 40.4 meters (m) near the levee centerline with mature trees located on the waterside and landside of the levee flanks. The levee was instrumented with piezometers and tensiometers to measure positive and negative porewater pressures across the levee after the trench was flooded with water and held at a constant hydraulic head during the seepage test—the results from this component of the experiment are not discussed in this report. We collected more than one billion three-dimensional light detection and ranging (lidar) data points before, during, and after the centerline seepage test to assess centimeter-scale stability of the two trees and the levee crown. During the seepage test, the waterside tree toppled (rotated 20.7 degrees) into the water. The landside tree rotated away from the levee by 5 centimeters (cm) at a height of 2 m on the tree. The paved surface of the levee crown had three regions that showed subsidence on the waterside of the trench—discussed as the northern, central, and southern features. The northern feature is an elongate region that subsided 2.1 cm over an area with an average width of 1.35 m that extends 15.8 m parallel to the trench from the northern end of the trench to just north of the trench midpoint, and is associated with a crack 1 cm in height that formed during the seepage test on the trench wall. The central subsidence feature is a semicircular region on the waterside of the trench that subsided by as much as 6.2 cm over an area 3.4 m wide and 11.2 m long. The southern feature is an elongate region that has a maximum subsidence of 3.5 cm over an area 0.75 m wide and 8.1 m long and is associated with a number of small fractures in the pavement that are predominately north-south-trending and parallel to the trench. We determined that there was no significant motion of the levee flank during the last week of the seepage test. We also determined biomorphic parameters for the landside tree, such as the 3D positioning on the levee, tree height, levee parallel/perpendicular cross sectional area, and canopy centroid. These biomorphic parameters were requested to support a University of California Berkeley team studying seepage and stability on the levee. A gridded, 2-cm bare-earth digital elevation model of the levee crown and the landside levee flank from the final terrestrial lidar (T-Lidar) survey provided detailed topographic data for future assessment. Because the T-Lidar was not integrated into the project design, other than an initial courtesy dataset to help characterize the levee surface, our ability to contribute to the overall science goals of the seepage test was limited. Therefore, our analysis focused on developing data collection and processing methodology necessary to align ultra high-resolution T-Lidar data (with an average spot spacing 2–3 millimeters on the levee crown) from several instrument setup locations to detect, measure, and characterize dynamic centimeter-scale deformation and surface changes during the seepage test.

California↗

Geomorphic changes caused by the 2011 flood at selected sites along the lower Missouri River and comparison to historical floods

An analysis of recent and historical U.S. Geological Survey streamgage information was used to assess geomorphic changes caused by the 2011 flood, in comparison to selected historical floods, at three streamgage sites along the lower Missouri River—Sioux City, Iowa; Omaha, Nebraska; and Kansas City, Missouri. Channel-width change was not evident at the three streamgage sites following the 2011 flood and likely was inhibited by bank stabilization. Pronounced changes in channel-bed elevation were indicated. At Sioux City and Omaha, the geomorphic effects of the 2011 flood were similar in terms of the magnitude of channelbed scour and recovery. At both sites, the 2011 flood caused pronounced scour (about 3 feet) of the channel bed; however, at Omaha, most of the channel-bed scour occurred after the flood had receded. More than 1 year after the flood, the channel bed had only partially recovered (about 1 foot) at both sites. Pronounced scour (about 3 feet at Sioux City and about 1.5 feet at Omaha) also was caused by the 1952 flood, which had a substantially larger peak discharge but was much shorter in duration at both sites. Again, at Omaha, most of the channel- bed scour occurred after the flood had receded. At Sioux City, substantial recovery of the channel bed (about 2.5 feet) was documented 1 year after the 1952 flood. Recovery to the pre-flood elevation was complete by April 1954. The greater recovery following the 1952 flood, compared to the 2011 flood, likely was related to a more abundant sediment supply because the flood predated the completion of most of the main-stem dam, channelization, and bank stabilization projects. At Omaha, following the 1952 flood, the channel bed never fully recovered to its pre-flood elevation. The geomorphic effect of the 2011 flood at Kansas City was fill (about 1 foot) on the channel bed followed by relative stability. The 1952 flood, which had a substantially larger peak discharge but was much shorter in duration, caused modest fill (about 0.5 foot) on the channel bed. The 1993 flood, which also had a substantially larger peak discharge but was much shorter in duration, caused pronounced scour of the channel bed (possibly as much as 4 feet). Similar to the floods at Omaha, much of the channel-bed scour at Kansas City occurred after the 1993 flood had receded. More than 1 year after the 1993 flood, following partial recovery (about 1 foot), the channel bed had stabilized, at least temporarily. Following the 1993 flood, the channel bed never fully recovered to its pre-flood elevation. For each flood in the post-dam era that resulted in substantial channel-bed scour (Sioux City in 2011, Omaha in 2011, Kansas City in 1993), recovery of the channel bed to its pre-flood elevation had not occurred more than 1 year after the flood (20 years after the 1993 flood at Kansas City). Thus, the possibility exists that channel-bed scour caused by large floods may have a cumulative effect along the lower Missouri River. The persistence of the flood-related decreases in channel-bed elevation may be indicative of the constrained ability of the channel to recover given a limited sediment supply caused by one or more of the following factors: upstream storage of sediment in reservoirs, bank stabilization, commercial sand dredging, depletion of readily available sediment by the flood, and a lack of post-flood sediment contributions from tributaries.

Colorado, Idaho, Iowa, Kansas, Missouri, Montana, ↗

Geologic map of the Dillon quadrangle, Summit and Grand Counties, Colorado

New 1:24,000-scale geologic mapping along the Interstate-70 urban corridor in western Colorado, in support of the USGS Central Region State/USGS Cooperative Geologic Mapping Project, is contributing to a more complete understanding of the stratigraphy, structure, tectonic evolution, and hazard potential of this rapidly developing region. The 1:24,000-scale Dillon quadrangle is near the headwaters of the Blue River and straddles features of the Blue River graben (Kellogg, 1999), part of the northernmost reaches of the Rio Grande rift, a major late Oligocene to recent zone of extension that extends from Colorado to Mexico. The Williams Range thrust fault, the western structural margin of the Colorado Front Range, cuts through the center of the quadrangle, although is mostly covered by surficial deposits. The oldest rocks in the quadrangle underlie the Williams Fork Mountains and the ridge immediately east of South Fork Middle Fork River, and include biotite-sillimanite schist and gneiss, amphibolite, and migmatite that are intruded by granite inferred to be part of the 1,667-1,750 Ma Routt Plutonic Suite (Tweto, 1987). The oldest exposed sedimentary unit is the Upper Jurassic Morrison Formation, but Pennsylvanian Maroon Formation, a sequence of red sandstone, conglomerate, and interbedded shale, underlies the southern part of the quadrangle. The thickest sequence of sedimentary rocks is Cretaceous in age and includes at least 500 m of the Upper Cretaceous Pierre Shale. Surficial deposits include (1) an old, deeply dissected landslide deposit, possibly as old as Pliocene, on the west flank of the Williams Fork Mountains, (2) deeply weathered, very coarse gravel deposits underlying a mesa in the southwest part of the quadrangle (the Mesa Cortina subdivision. The gravels are gold bearing and were mined by hydraulic methods in the 1800s), (3) moderately to deeply weathered, widespread, bouldery material that is a combination of till of the Bull Lake glaciation, debris-flow deposits, landslide deposits, and possibly pre-Bull Lake till, (4) glacial deposits of both Bull Lake (middle Pleistocene) and Pinedale (late Pleistocene)glaciations, (5) recent landslide deposits, and (6)extensive colluvial and alluvial deposits.

Colorado↗

Geologic map of the Dillon quadrangle, Summit and Grand Counties, Colorado

New 1:24,000-scale geologic mapping along the Interstate-70 urban corridor in western Colorado, in support of the USGS Central Region State/USGS Cooperative Geologic Mapping Project, is contributing to a more complete understanding of the stratigraphy, structure, tectonic evolution, and hazard potential of this rapidly developing region. The 1:24,000-scale Dillon quadrangle is near the headwaters of the Blue River and straddles features of the Blue River graben (Kellogg, 1999), part of the northernmost reaches of the Rio Grande rift, a major late Oligocene to recent zone of extension that extends from Colorado to Mexico. The Williams Range thrust fault, the western structural margin of the Colorado Front Range, cuts through the center of the quadrangle, although is mostly covered by surficial deposits. The oldest rocks in the quadrangle underlie the Williams Fork Mountains and the ridge immediately east of South Fork Middle Fork River, and include biotite-sillimanite schist and gneiss, amphibolite, and migmatite that are intruded by granite inferred to be part of the 1,667-1,750 Ma Routt Plutonic Suite (Tweto, 1987). The oldest exposed sedimentary unit is the Upper Jurassic Morrison Formation, but Pennsylvanian Maroon Formation, a sequence of red sandstone, conglomerate, and interbedded shale, underlies the southern part of the quadrangle. The thickest sequence of sedimentary rocks is Cretaceous in age and includes at least 500 m of the Upper Cretaceous Pierre Shale. Surficial deposits include (1) an old, deeply dissected landslide deposit, possibly as old as Pliocene, on the west flank of the Williams Fork Mountains, (2) deeply weathered, very coarse gravel deposits underlying a mesa in the southwest part of the quadrangle (the Mesa Cortina subdivision. The gravels are gold bearing and were mined by hydraulic methods in the 1800s), (3) moderately to deeply weathered, widespread, bouldery material that is a combination of till of the Bull Lake glaciation, debris-flow deposits, landslide deposits, and possibly pre-Bull Lake till, (4) glacial deposits of both Bull Lake (middle Pleistocene) and Pinedale (late Pleistocene)glaciations, (5) recent landslide deposits, and (6)extensive colluvial and alluvial deposits.

Miscellaneous Field Studies Map↗

U.S. Geological Survey middle Rio Grande basin study; proceedings of the third annual workshop, Albuquerque, New Mexico, February 24-25, 1999

Approximately 40 percent (about 600,000 people) of the total population of New Mexico lives within the Middle Rio Grande Basin, which includes the City of Albuquerque. Ongoing analyses of the central portion of the Middle Rio Grande Basin by the U.S. Geological Survey (USGS) in cooperation with the City of Albuquerque and other agencies have shown that ground water in the basin is not as readily accessible as earlier studies indicated. A more complete characterization of the ground-water resources of the entire Middle Rio Grande Basin is hampered by a scarcity of data in the northern and southern areas of the basin. The USGS Middle Rio Grande Basin study is a 5-year effort by the USGS and other agencies to improve the understanding of the hydrology, geology, and land-surface characteristics of the Middle Rio Grande Basin. The primary objective of this study is to improve the understanding of the water resources of the basin. Of particular interest is to determine the extent of hydrologic connection between the Rio Grande and the Santa Fe Group aquifer. Additionally, ground-water quality affects the availability of water supplies in the basin. Improving the existing USGS-constructed ground-water flow model of the Middle Rio Grande Basin will integrate all the various tasks that improve our knowledge of the various components of the Middle Rio Grande water budget. Part of this improvement will be accompanied by extended knowledge of the aquifer system beyond the Albuquerque area into the northern and southern reaches of the basin. Other improvements will be based on understanding gained through process-oriented research and improved geologic characterization of the deposits. The USGS and cooperating agencies will study the hydrology, geology, and land-surface characteristics of the basin to provide the scientific information needed for water-resources management and for managers to plan for water supplies needed for a growing population. To facilitate exchange of information among the scientists working on the Middle Rio Grande Basin study, yearly technical meetings have been held for each of the first 3 years of the anticipated 5-year study. These meetings provide an opportunity to present research results and plan new field efforts. This report documents the results of research presented at the third annual technical workshop held in Albuquerque, New Mexico, February 24-25, 1999. The report is organized into this introduction and five chapters that focus on Middle Rio Grande Basin study investigations in progress in the Middle Rio Grande Basin. The first chapter describes geographic data and analysis efforts in the basin. The second chapter details work being done on the hydrogeologic and geologic framework of the basin. The third chapter describes studies on ground-water recharge in the basin. The fourth chapter provides details on the research on the ground-water flow system in the basin, including modeling efforts. The fifth chapter is devoted to an overview of New Mexico District Cooperative Program studies in the basin. The information in this report presents preliminary results of an evolving study. As the study progresses and individual projects publish their results in more detail, the USGS hopes to expand the scientific basis needed for management decisions regarding the Middle Rio Grande Basin.

Open-File Report↗

The acoustic streamflow-measuring system on the Columbia River at The Dalles, Oregon

Records of discharge on the Columbia River at The Dalles, Oreg., are vital to the management of the complex water-development projects in the Columbia River basin. Accurate discharge figures are needed for consistent day-to-day management and are required to meet treaty obligations with Canada. Because dams have been erected that completely control watersurface elevations at nearly all points in the river from Bonneville Dam to the Canadian border, conventional stream-gaging methods, used historically, are no longer adequate. Consequently, new techniques must be used to obtain the accurate discharge records required--records that are computed independently from the hydroelectric operation logs and that stand alone as the recognized flow records in the basin. This need for an accurate, independent gaging system has been met by the installation of an acoustic streamflow-measuring system in the river channel at The Dalles, Oreg. This device provides an index of water velocity by measuring the difference in traveltimes of acoustic pulses transmitted through the water in each direction along a diagonal path across the river. The flow of water along the path increases the speed of one signal and retards the speed of the other. The difference in time of travel is related linearly to the water velocity along the path. The velocity index and river stage are used as a two-variable index in the computation of flow. These variables, correlated against current-meter measurements made with specialized boat equipment, provide a reliable basis for computations of instantaneous and daily mean discharges. Installation of this sytem, which is the first application of an AVM (acoustic velocity meter) in a large natural channel, was completed in April 1969. It has been in continuous operation since that date. Performance has been satisfactory, and similar installations at other key points in the Columbia River basin are now under consideration. This paper covers the general theory behind acoustic velocity meters, tracing development from earlier concepts to the present commercially available system. Conclusions are that the AVM can now be considered as an operational instrument which permits accurate gaging of river discharge at many sites where conventional stream-gaging procedures have proved to be unreliable.

Oregon↗

Magnitude conversion and earthquake recurrence rate models for the central and eastern United States

Development of Seismic Source Characterization (SSC) models, which is an essential part of Probabilistic Seismic Hazard Analyses (PSHA), can help forecast the temporal and spatial distribution of future damaging earthquakes (𝑀 w ≥ 5) in seismically active regions. Because it is impossible to associate all earthquakes with known faults, seismic source models for PSHA often include sources of diffuse seismicity in which future earthquake scenarios are not localized on mapped faults. These sources of diffuse seismicity are referred to as area source zones, distributed seismicity zones, or just source zones. During the early years of PSHA studies, it was assumed that earthquakes in seismotectonic zones have (1) uniform spatial distribution, (2) Poisson temporal distribution, and (3) exponential magnitude distribution (NRC, 2012). In seismically active regions (e.g., the Western United States), where active faults are readily identified, models of the spatial distribution of earthquakes include both the fault source geometries and the distributed seismicity (background) source zones. Source characterization of active faults is complemented by paleoseismic studies with estimates of earthquake magnitudes, dates of occurrences, and slip rates, which provide important information for PSHA studies. In the Central and Eastern United States (CEUS) very few Quaternary-active faults have the requisite information for use in PSHA (i.e., fault geometry and dimensions, event rates or slip rates, etc.), and we lack knowledge about the causative faults for most observed seismicity in the region. As a result, area source zones are frequently used in site-specific PSHA in the CEUS to represent diffuse seismicity that cannot be associated with faults. However, there are examples of active fault sources in the CEUS, such as the Meers fault, the Cheraw fault, and New Madrid region, where individual faults can be characterized. The source characterization models for background seismicity are based, to a large extent, on an assumption that spatial distribution of historical and recorded seismicity will not change substantially for time periods of interest for PSHA (approximately the next 50-100 years for engineered structures). Furthermore, studies such as those by Kafka (2007, 2009) found a correlation between the locations of small- to moderate-magnitude earthquakes and the locations of large-magnitude earthquakes, indicating that we can, with some level of confidence, use the spatial pattern of smaller earthquakes to forecast the future pattern of damaging earthquakes. Within background seismicity zones, the earthquake rate forecast is developed using spatial smoothing of the small to moderate magnitude events in earthquake catalogs. Different methodologies are used for this purpose and can predict varying distributions of seismicity rates. This in turn affects the results of a seismic hazard analysis. The U.S. Geological Survey (USGS) and Nuclear Regulatory Commission (NRC) use different methods for computing spatially smoothed seismicity rates in the CEUS; the USGS uses kernel-based spatial smoothing methods in developing the National Seismic Hazard Model (NSHM), and the method adopted in the Central and Eastern United States Seismic Source Characterization (CEUS-SSC) project is used when evaluating seismic hazard for nuclear power plant siting. These methods are described and the impact on seismic hazard are evaluated in this Research Information Letter (RIL). Another important input to estimating the rate of distributed seismicity is event magnitudes listed in earthquake catalogs. A substantial source of uncertainty in catalogs is the magnitude assigned to a given earthquake. Numerous different magnitude types exist, with each magnitude type computed in a different way. Therefore, for the sake of consistency, both the CEUS-SSC and the USGS NSHM have attempted to assemble a complete catalog with a uniform magnitude determination. To this end, moment magnitude, 𝑀 w , which is a physics-based measurement, has been adopted as the standard. However, 𝑀 w was not computed routinely until the past few decades. To address this issue, the CEUS-SSC conducted extensive analyses to determine conversion equations from which to take a routinely computed network (e.g., 𝑀 L or 𝑚 bLg ) and convert it into 𝑀 w . Another issue with using 𝑀 w is that it becomes increasingly difficult to compute for earthquakes with 𝑀 less than ~4. This study investigates the effects of moment magnitude estimation and spatial smoothing methods on estimation of the earthquake rate forecast and on seismic hazard. We investigate the validity of the magnitude conversion equations and their associated uncertainties by applying them to a case study for induced earthquakes in southern Kansas and northern Oklahoma, and summarize the use of the decay of the seismic coda to estimate 𝑀 w for small earthquakes (𝑀 w < 4. Furthermore, the study documents a comparison and assessment of background seismicity smoothing methods implemented by the USGS for the NSHM and used by the CEUS-SSC for siting nuclear facilities based on probabilistic seismic hazard estimates from multiple source zones in the CEUS and for multiple sites.

central and eastern United States↗

Geophysical logs and water-quality data collected for boreholes Kimama-1A and -1B, and a Kimama water supply well near Kimama, southern Idaho

In September 2010, a research consortium led by scientists from Utah State University began drilling the first of three continuously cored boreholes on the Snake River Plain in southern Idaho. The goals of this effort, the Snake River Scientific Drilling Project, are to study the interaction between the Earth's crust and mantle, to identify potential geothermal energy sources, and to track the evolution of the Yellowstone hotspot on the Snake River Plain. The first borehole, located near Kimama, Idaho, is about 50 miles southwest of the U.S. Department of Energy's Idaho National Laboratory. Because geohydrologic data are scarce for that area of the central Snake River Plain, the Kimama borehole, completed in January 2011, provided a unique opportunity to collect geophysical and water-chemistry data from the eastern Snake River Plain aquifer system, downgradient of the laboratory. Therefore, in conjunction with the Snake River Scientific Drilling Project, scientists from the U.S. Geological Survey's Idaho National Laboratory Project Office conducted geophysical logging and collected water samples at the Kimama site. Wireline geophysical logs were collected for the diverging borehole, Kimama-1A and -1B, from land surface to 976 and 2,498 feet below land surface (BLS), respectively. Water samples were collected from Kimama-1A at depths near 460 and 830 feet BLS, and from the Kimama Water Supply (KWS) well located about 75 feet away. Geophysical log data included a composite of natural gamma, neutron, gamma-gamma dual density, and gyroscopic analysis for boreholes Kimama-1A and -1B. Geophysical logs depicted eight sediment layers (excluding surficial sediment) ranging from 4 to 60 feet in thickness. About 155 individual basalt flows were identified, ranging from less than 3 feet to more than 175 feet in thickness (averaging 15 feet) for borehole Kimama-1B (0 to 2,498 feet BLS). Sediment and basalt contacts were selected based on geophysical traces and were confirmed with visual inspection of core photographs. Temperature logs from the water table surface (about 260 feet BLS) to the bottom of borehole Kimama-1B (2,498 feet BLS) were nearly isothermal, ranging from about 62 to 64 degrees Fahrenheit. Gyroscopic data revealed that borehole Kimama-1B begins to separate from borehole Kimama-1A near a depth of 676 feet BLS. Drillhole azimuth and horizontal deviation at total logged depth for boreholes Kimama-1A and -1B were 172.6 and 188.3 degrees and 25.9 and 82.0 feet, respectively. Water samples were collected and analyzed for common ions; selected trace elements; nutrients; isotopes of hydrogen, oxygen, and carbon; and selected radionuclides. One set of water samples was collected from the KWS well and the two other sample sets were collected from borehole Kimama-1A near 460 and 830 feet BLS. With one exception, data for all three zones sampled near Kimama generally indicated that the water chemistry was similar. The exception was found in the deepest zone in borehole Kimama-1A (830 feet BLS) where concentrations probably were affected by the drilling mud. A comparison of the inorganic, organic, and stable chemistry data between the KWS well and the 460-foot zone in borehole Kimama-1A indicated similar chemistry of the aquifer water, except for some variability with nitrate plus nitrite, orthophosphate, iron, zinc, and carbon-14. Radionuclide concentrations were either less than reporting levels or at background levels for the eastern Snake River Plain aquifer.

Idaho↗

Groundwater quality in the Indian Wells Valley, California

Groundwater provides more than 40 percent of California’s drinking water. To protect this vital resource, the State of California created the Groundwater Ambient Monitoring and Assessment (GAMA) Program. The Priority Basin Project of the GAMA Program provides a comprehensive assessment of the State’s groundwater quality and increases public access to groundwater-quality information. Indian Wells Valley is one of the study areas being evaluated. The Indian Wells study area is approximately 600 square miles (1,554 square kilometers) and includes the Indian Wells Valley groundwater basin (California Department of Water Resources, 2003). Indian Wells Valley has an arid climate and is part of the Mojave Desert. Average annual rainfall is about 6 inches (15 centimeters). The study area has internal drainage, with runoff from the surrounding mountains draining towards dry lake beds in the lower parts of the valley. Land use in the study area is approximately 97.0 percent (%) natural, 0.4% agricultural, and 2.6% urban. The primary natural land cover is shrubland. The largest urban area is the city of Ridgecrest (2010 population of 28,000). Groundwater in this basin is used for public and domestic water supply and for irrigation. The main water-bearing units are gravel, sand, silt, and clay derived from the Sierra Nevada to the west and from the other surrounding mountains. Recharge to the groundwater system is primarily runoff from the Sierra Nevada and to the west and from the other surrounding mountains. Recharge to the groundwater system is primarily runoff from the Sierra Nevada and direct infiltration from irrigation and septic systems. The primary sources of discharge are pumping wells and evapotranspiration near the dry lakebeds. The primary aquifers in the Indian Wells study area are defined as those parts of the aquifers corresponding to the perforated intervals of wells listed in the California Department of Public Health database. Public-supply wells in Indian Wells Valley are completed to depths between 240 and 800 feet (73 to 244 meters), consist of solid casing from the land surface to a depth of 180 to 260 feet (55 to 79 meters), and are screened or perforated below the solid casing.

California↗

GIS Representation of Coal-Bearing Areas in Africa

The African continent contains approximately 5 percent of the world's proven recoverable reserves of coal (World Energy Council, 2007). Energy consumption in Africa is projected to grow at an annual rate of 2.3 percent from 2004 through 2030, while average consumption in first-world nations is expected to rise at 1.4 percent annually (Energy Information Administration, 2007). Coal reserves will undoubtedly continue to be part of Africa's energy portfolio as it grows in the future. A review of academic and industrial literature indicates that 27 nations in Africa contain coal-bearing rock. South Africa accounts for 96 percent of Africa's total proven recoverable coal reserves, ranking it sixth in the world. This report is a digital compilation of information on Africa's coal-bearing geology found in the literature and is intended to be used in small scale spatial investigations in a Geographic Information System (GIS) and as a visual aid for the discussion of Africa's coal resources. Many maps of African coal resources often include points for mine locations or regional scale polygons with generalized borders depicting basin edges. Point locations are detailed but provide no information regarding extent, and generalized polygons do not have sufficient detail. In this dataset, the polygons are representative of the actual coal-bearing lithology both in location and regional extent. Existing U.S. Geological Survey (USGS) digital geology datasets provide the majority of the base geologic polygons. Polygons for the coal-bearing localities were clipped from the base geology that represented the age and extent of the coal deposit as indicated in the literature. Where the 1:5,000,000-scale geology base layer's ages conflicted with those in the publications, polygons were generated directly from the regional African coal maps (1:500,000 scale, approximately) in the published material. In these cases, coal-bearing polygons were clipped to the literature's indicated coal extent, without regard to the underlying geology base or topographic constraints. Indication of the presence of African coal is based on multiple sources. However, the quality of the sources varies and there is often disagreement in the literature. This dataset includes the rank, age, and location of coal in Africa as well as the detailed source information responsible for each coal-bearing polygon. The dataset is not appropriate for use in resource assessments of any kind. Attributes necessary for tasks, such as number of coal seams, thickness of seams, and depth to coal are rarely provided in the literature and accordingly not represented in this data set. Small-scale investigations, representations and display uses are most appropriate for this product. This product is the first to show coal distribution as bounded by actual geologic contacts for the entire African continent. In addition to the spatial component of this dataset, complete references to source material are provided for each polygon, making this product a useful first step resource in African coal research. Greater detail regarding the creation of this dataset as well as the sources used is provided in the metadata file for the Africa_coal.shp file.

Open-File Report↗

Recent planform changes in the Upper Mississippi River

Geomorphic changes in the Upper Mississippi River (UMR) have long been a concern of river agencies charged with maintaining and restoring river habitat (GREAT 1980; Jackson et al. 1981; USFWS 1992). Large meandering alluvial rivers like the UMR are expected to constantly change and adjust their fluvial landforms within their riparian corridors as a result of the natural interaction of hydrologic processes, sediment movement, and vegetation over time. However, present geomorphic changes in the UMR reflect altered hydrologic, hydraulic, and sediment conditions caused by regulated flows, constructed agricultural levees and navigation dams, altered land use in the watershed, and climate change. Levees reduce lateral hydrologic and sediment connectivity between channels and floodplains on many tributaries and on the Mississippi River downstream of Pool 13. Between each of the dams are a repeating series of landforms associated with tailwater, intermediate, and impounded conditions. The dams maintain a minimum water level, thus creating many off-channel areas that act as sediment traps. Whereas high-head dams cut off sedimentological connectivity longitudinally through the river corridor (Skalak et al., 2013), low head dams on the UMR only slightly altered transport longitudinally. Deltaic-like sedimentation can be common in the impounded sections of dammed rivers. Erosion of relict land surfaces that remained above the raised impounded water levels has been the dominant change in UMR impounded sections due to increased wind fetch leading to increased wave action. Even though upland sources of sediment from tributaries have decreased over the middle to late 20th century, increased annual precipitation, the interplay of increased variability in flood magnitudes from year to year, and more fall and winter flooding have likely changed erosion and sedimentation patterns in the UMR (Belby, et al., 2019). Paradoxically, monitoring and research indicates that the concentration of some water column constituents like total suspended solids and phosphorous has decreased during the 1991 to 2014 time period (Kreiling and Houser, 2016). In areas prone to increased sedimentation, bed elevations rise and thereby water depths are reduced at a given discharge, resulting in loss of fish habitat. Sediment deposition or erosion further influences water exchange rates between main channel and off-channel areas in the river by increasing resistance in connecting channels or enlarging existing connecting channels. Water depth and water exchange rates are the most prominent features describing habitat quality in the UMR (De Jager et al. 2018), and in some cases, the trajectory of planform change from heightened deposition promises to threaten deep backwater habitats particularly important for overwintering fish. Although information on the rate of vertical change in bed elevation is needed for a complete assessment of geomorphic change associated with the loss of deep backwater habitats, mapping planform changes over time (i.e., lateral changes between the land-water boundary) provide needed information on the location, potential cause, and progressive direction of deposition, especially in the mid sections between dams where deltaic processes are the most pronounced. Several types of planform changes have been observed and identified as concerns. For example, island loss in the large impounded areas of the upper part of the UMR was one of the concerns identified by river managers in the 1980s and 90s, and subsequently island construction became a common form of restoration implemented by the Upper Mississippi River Restoration (UMRR) Program (USACE 2012). Other subtler planform changes, such as channel bank erosion and delta formation in backwaters, are perceived to be important, but have largely gone unquantified. A systemwide reconnaissance of the UMR and IWW conducted in 1998 concluded that 14-percent of the river banks were eroding (Nakato and Anderson 1998). However, stabilization of existing river banks has never been widely pursued as a restoration measure, due to the high cost and uncertain benefits. Delta formation reduces the amount of backwater habitat; however, the deltas maintain and create a mix of riparian and aquatic habitats, and that is generally considered to be beneficial for wildlife and fish. If recent hydrologic trends of more frequent and longer duration flood events continue, a better understanding of planform changes can help in describing past changes, and then be used to forecast potential future trajectories of change. If UMR resource managers determine that past and forecasted conditions are undesirable, then UMRR projects could be identified and prioritized to address those concerns. Vegetative cover associations with landform changes have been used to detect and quantify planform changes in many rivers (Johnson 1985; Hiatt 2015; Volte et al. 2015). Freyer and Jefferson (2013) completed such a study in Pool 6 of the UMR using the landcover data from 12 dates over a 115-yr period, including the 1989, 2000, and 2010/2011 landcover/use (LCU) data from the UMRR Program. Planform change detected over the last 20 years represented by the UMRR Program data best reflect present-day geomorphic patterns, rates and processes. Changes occurring prior to dam construction and changes occurring soon after dam construction are likely not the same as those happening now, 50-70 years after dam construction and creation of the impoundments (McHenry et al., 1984; Bhowmik and Adams, 1986; WEST Consultants, 2000). The LCU data from each of the 1989, 2000, and 2010/2011 imagery was developed using similar methods and is available in a Geographical Information System (GIS) for the entire UMR and therefore provides the opportunity for a more comprehensive planform change analysis. This study used GIS overlays of LCU classes to map and quantify changes in planform features over two periods, looking specifically for depositional areas where terrestrial and wetland vegetation expanded at the expense of open water. The land expansion was grouped into four possible process-based types common in large floodplain rivers, some following that used by Lewin et al. (2017). The four types include: crevasse deltas emanating from a breach from a main channel through a natural levee or narrow floodplain into backwaters (crevasse deltas), tributary deltas expanding into backwaters (tributary deltas), deltaic bars at the upstream end of impoundments (impounded deltas), and linear-like bars extending from the downstream ends of narrow levees and remnant floodplains (bar-tail limbs). The methods deployed for change detection addressed possible errors from a variety of sources.

Illinois, Iowa, Minnesota, Missouri, Wisconsin↗

Evaluation of nonpoint-source contamination, Wisconsin: water year 1999

The objective of the watershed-management evaluation monitoring program in Wisconsin is to evaluate the effectiveness of best-management practices (BMPs) for controlling nonpoint-source pollution in rural and urban watersheds. This progress report provides a summary of the data collected by the U.S Geological Survey for the program and a discussion of the results from several different detailed analyses conducted within this program. A land-use and best-management-practice inventory is ongoing for each evaluation monitoring project to track the different sources of nonpointsource pollution in each watershed and to document implementation of best-management programs that may cause changes in the water quality of streams. Updated information is gathered each year, mapped, and stored in a geographic-information-system database. Summaries of BMP-implementation data collected through the 1999 water year are presented in this report. Suspended sediment and total phosphorus storm-load and annual-load data are summarized for eight rural sites. For all 8 rural sites a sufficient number of pre-BMP storm samples have been collected; for two of the sites (Brewery and Garfoot Creeks), a sufficient number of post-BMP storm samples have been collected to allow for a final assessment of the effectiveness of the BMPs. For the remaining sites, numerous transitional storm samples have been collected, but in all cases BMP implementation has lagged such that there are insufficient post-BMP storm samples for final analysis. For two sites (Rattlesnake and Kuenster Creeks) there are not enough planned BMPs to warrant further data collection. Continuous dissolved-oxygen data collected at 5 rural sites are summarized. In terms of instantaneous concentrations when comparing pre-BMP data to transitional and post-BMP data, the general trend is a reduction in the number of days that the dissolved oxygen concentration was less than the state standard. These results are anecdotal, however; the differences have not been rigorously tested statistically. For a level of dissolved oxygen sustained over a continuous hour, the results are mixed. In general the number of days with standard violations has decreased, but there are notable exceptions. For the four urban streams, the pre-BMP data were examined to determine the level of improvement that could potentially be detected with a statistical analysis. Regression analyses were performed relating constituent loads of suspended solids, total phosphorus and total copper to various independent variables, including seasonal terms and variables related to rainfall. On the basis of the residuals from the regressions, there is a wide range of potential change that could be detected with an analysis of pre- and post-BMP loads. This is likely a result of the high degree of variability in the data, particularly from site to site. For suspended solids, total phosphorus, and total recoverable copper the minimum detectable changes ranges from 20-80, 30-70 and 30-90 percent, respectively. For two of the eight rural streams (Rattlesnake and Kuenster Creeks) minimal BMP implementation has occurred, hence a comparison of pre- BMP and data collected after BMP implementation began is not warranted. For two other rural streams (Brewery and Garfoot Creeks), BMP implementation is complete. For the four remaining rural streams (Bower, Otter, Eagle, and Joos Valley Creeks), the pre-BMP load data were compared to the transitional data to determine if significant reductions in the loads have occurred as a result of the BMP implementation to date. For all sites, the actual constituent loads for suspended solids and total phosphorus exhibit no statistically significant reductions after BMP installation. Multiple regressions were used to remove some of the natural variability in the data. Based on the residual analysis, for Otter Creek, there is a significant difference in the suspended-solids regression residuals between the pre-BMP and transitional periods, indicating a potential reduction as a result of the BMP implementation after accounting for natural variability. For Joos Valley Creek, the residuals for suspended solids and total phosphorus both show a significant reduction after accounting for natural variability. It is possible that the other sites will also show statistically significant reductions in suspended solids and total phosphorus if additional BMPs are implemented.

Wisconsin↗

Simulated flow of groundwater and brine from a flooded salt mine in Livingston County, New York, and effects of remedial pumping on an overlying aquifer

Two ceiling collapses in the Retsof salt mine near Geneseo in upstate New York in spring 1994 resulted in the upward propagation of two columns of rubble through 600 feet of overlying shale and carbonate bedrock. This upward propagation formed a hydraulic connection between the lower confined aquifer (LCA) and the mine and allowed water from the aquifer and bedrock fracture zones that intersected the rubble columns to flow into the mine at a rate of 18,000 gallons per minute (gal/min) . All salt mining ceased in September 1995, and the mine was completely flooded by January 1996. The flow of water from the lower confined aquifer into the mine caused widespread drawdowns, and water levels in the aquifer declined by as much as 400 feet near the collapse area and by more than 50 feet at wells 7 miles to the north and south. Within 3 to 4 weeks of the collapses, water levels in about a dozen domestic and industrial wells had declined severely, and some wells went dry. Water levels in at least 58 wells in the lower and middle confined aquifers were affected by mine flooding. Groundwater in the upper unconfined aquifer and surface water in streams were unaffected by water-level drawdown, but channels of the Genesee River and Beards Creek were altered by land subsidence related to the mine collapse. Water levels recovered from 1996 through 2006, but the mine is now filled with about 15 billion gallons of saturated halite brine. The weight of the overlying rock and sediment is expected to cause the salt beds to deform and fill the mine cavity during the next several hundred years; this in turn could displace as much as 80 percent of the brine and cause it to move upward through the rubble chimneys, rendering the LCA unusable as a source of water supply. Saline water was detected in the LCA in 2002 but was found to be derived primarily from fractures in the limestone and shale units between the mine and the LCA, rather than from the mine. In September 2006, the mine company began a brine-mitigation project that entailed pumping five wells finished in limestone and shale units within the collapse areas to alter the flow gradient and thereby prevent further movement of brine and saline water into the LCA. The pumped brine was routed to an onsite desalination plant. At the same time, the U.S. Geological Survey (USGS) began a study in cooperation with the New York State Office of the Attorney General to construct numerical models to analyze the groundwater chemistry and delineate the directions of flow. Specific objectives of the study were to: * Assess the sources of salinity within the collapse area and identify the factors that control the movement and mixing of freshwater, saline waters from fracture zones, and brine; * Evaluate the likelihood that the pumping will induce anhydrite dissolution and lead to continued land subsidence; * Construct variable-density groundwater flow models to predict the effect of remedial pumping on salinity within the LCA; * Evaluate the effectiveness of remedial pumping in preventing the movement of saline water into the LCA; and * Predict the extent of brine migration 8 years after a hypothetical shutdown of all pumping in 2008. This report (1) summarizes the hydrogeologic setting and effects of mine flooding, (2) describes the geochemical and variable-density model simulations and their principal results, (3) discusses the implications of (a) continued pumping and desalination to protect the LCA and (b) a full shutdown of pumping after 2008, and (4) suggests further research that could lead to refinement of model predictions. Additional information may be found in Yager and others (2001 and 2009). These reports can be accessed at http://pubs.usgs.gov/pp/pp1611/ and http://pubs.usgs.gov/pp/pp1767/, respectively. A summary of simulation results can be accessed at http://ny.water.usgs.gov/projects/Coram/seawat/seawat.html.

New York↗

Assessment of undiscovered copper resources of the world, 2015

The U.S. Geological Survey completed the first-ever global assessment of undiscovered copper resources for the two most significant sources of global copper supply: porphyry copper deposits and sediment-hosted stratabound copper deposits. The geology-based study identified 236 areas for undiscovered copper in 11 regions of the world. Estimated amounts of undiscovered copper resources are reported at different levels of probability. The results of the assessment indicate that a mean of at least 3,500 million metric tons (Mt) of undiscovered copper associated with these deposit types may exist worldwide, exceeding the 2,100 Mt of identified copper resources tabulated for these deposit types. Porphyry copper deposits contain 1,800 Mt of identified copper resources and are estimated to contain a mean of at least 3,100 Mt of undiscovered copper resources. South America is the dominant source for both identified and undiscovered porphyry copper resources. However, several regions of Asia, including China, have significant potential for undiscovered porphyry copper resources. The amount of mean undiscovered porphyry copper resources that may be economic to extract varies as a function of likely depth to a deposit and quality of local infrastructure that could support mining. Sediment-hosted stratabound copper deposits contain 310 Mt of identified copper resources and are estimated to contain a mean of at least 420 Mt of undiscovered copper resources. The sedimentary basins that may contain significant undiscovered copper resources are the Katanga Basin in central Africa, the Southern Permian Basin of Poland and Germany, the Chu-Sarysu Basin of Kazakhstan, and the Kodar-Udokan area of Russia. Sedimentary basins in the Northwest Botswana Rift in Botswana and Namibia, the Benguela and Cuanza Basins of Angola, and the Cambrian rocks of Egypt, Israel, and Jordan are recognized as having significant potential for undiscovered copper resources in sediment-hosted stratabound copper deposits; however, these areas require additional research, analysis, and evaluation before quantitative resource estimates can be made. The estimate of at least 3,500 Mt of undiscovered copper in two deposit types provides a basis for long-range planning for this important commodity. U.S. copper consumption is 2 Mt per year, world consumption is about 20 Mt per year, and global production from these two deposit types is about 12 Mt per year. Total global copper production from all deposit types from 1879 to 2012 was about 600 Mt. The world’s use of mineral resources, such as copper, will continue to increase in the foreseeable future to support a growing world population and increasing standards of living. The world has sufficient copper to last for decades. However, increases in exploration and growth in mining capacity will be necessary to identify and develop undiscovered resources to supply projected demand.

Scientific Investigations Report↗

U.S.-Soviet Collaborative Geological and Geophysical Survey of the Mid-Atlantic Ridge near 31 degrees N, the Petrov Fracture Zone

Introduction In February 1989, the first formal U.S.-Soviet joint marine geologic-geophysical study in 10 years was undertaken along the Mid-Atlantic Ridge near 31°N on the 12th Cruise of the RN Akademik Boris Petrov of the Vernadsky Institute of Geochemistry (USSR Academy of Sciences, Moscow). This survey was initiated as part of the U.S.S.R.-U.S. cooperative research project "Mid-Atlantic Ridge Crest Processes" within the framework of the Soviet-U.S. bilateral Ocean Studies Agreement (Ostenso, 1989). U.S. scientists from the U.S. Geological Survey, University of Houston, and Woods Hole Oceanographic Institution participated in this program with Soviet scientists from the Vernadsky Institute of Geochemistry, Institute of Geology, and Schmidt Institute of Physics of the Earth, all institutes of the USSR Academy of Sciences in Moscow (Appendix 1 ). The ship departed from Rotterdam, Nederlands on February 2, 1989 and docked in Bridgetown, Barbados on February 28, 1989. A log of the ship's schedule during this cruise is given in Appendix 2. This study involved a limited multibeam-bathymetric, gravity, magnetic, and seismic- reflection survey. and dredging program of a short-offset transform fault named the Petrov Fracture Zone near 31 °N, located just north of the Atlantis Fracture Zone on the Mid Atlantic Ridge. A site survey at King's Trough in the northeast Atlantic for a MIR submersible program in June 1989 was originally planned as part of this program, but bad weather and the resultant poor quality geophysical data forced this work to be terminated after only one day. Nearly 6000 km of geophysical profile data and 13 dredge stations were completed during this cruise. A description of the geophysical systems aboard the RN Petrov is given in Appendices 3 and 4. All geophysical data were recorded on magnetic tape in data formats described in Appendix 5. Dredge locales and description summaries only are presented in Appendix 6. Detailed descriptions of dredge samples will be presented elsewhere. Operational plan for the studies on this cruise was developed as a cooperative effort between U.S. and Soviet scientists, who established jointly the basic objectives of the study. The U.S. scientists were given the responsibility for developing the detailed survey and dredge sampling plans. Dredge operations and basic geophysical systems operations were the responsibility of the Soviet personnel.

Open-File Report↗

Groundwater quality in the Owens Valley, California

Groundwater provides more than 40 percent of California’s drinking water. To protect this vital resource, the State of California created the Groundwater Ambient Monitoring and Assessment (GAMA) Program. The Priority Basin Project of the GAMA Program provides a comprehensive assessment of the State’s groundwater quality and increases public access to groundwater-quality information. Owens Valley is one of the study areas being evaluated. The Owens study area is approximately 1,030 square miles (2,668 square kilometers) and includes the Owens Valley groundwater basin (California Department of Water Resources, 2003). Owens Valley has a semiarid to arid climate, with average annual rainfall of about 6 inches (15 centimeters). The study area has internal drainage, with runoff primarily from the Sierra Nevada draining east to the Owens River, which flows south to Owens Lake dry lakebed at the southern end of the valley. Beginning in the early 1900s, the City of Los Angeles began diverting the flow of the Owens River to the Los Angeles Aqueduct, resulting in the evaporation of Owens Lake and the formation of the current Owens Lake dry lakebed. Land use in the study area is approximately 94 percent (%) natural, 5% agricultural, and 1% urban. The primary natural land cover is shrubland. The largest urban area is the city of Bishop (2010 population of 4,000). Groundwater in this basin is used for public and domestic water supply and for irrigation. The main water-bearing units are gravel, sand, silt, and clay derived from surrounding mountains. Recharge to the groundwater system is primarily runoff from the Sierra Nevada, and by direct infiltration of irrigation. The primary sources of discharge are pumping wells, evapotranspiration, and underflow to the Owens Lake dry lakebed. The primary aquifers in Owens Valley are defined as those parts of the aquifers corresponding to the perforated intervals of wells listed in the California Department of Public Health database. Public-supply wells in Owens Valley are completed to depths between 210 and 480 feet (64 to 146 meters), consist of solid casing from the land surface to a depth of 50 to 80 feet (15 to 24 meters), and are screened or perforated below the solid casing.

California↗

Abundance estimation and conservation biology

Abundance is the state variable of interest in most population–level ecological research and in most programs involving management and conservation of animal populations. Abundance is the single parameter of interest in capture–recapture models for closed populations (e.g., Darroch, 1958; Otis et al., 1978; Chao, 2001). The initial capture–recapture models developed for partially (Darroch, 1959) and completely (Jolly, 1965; Seber, 1965) open populations represented efforts to relax the restrictive assumption of population closure for the purpose of estimating abundance. Subsequent emphases in capture–recapture work were on survival rate estimation in the 1970’s and 1980’s (e.g., Burnham et al., 1987; Lebreton et al.,1992), and on movement estimation in the 1990’s (Brownie et al., 1993; Schwarz et al., 1993). However, from the mid–1990’s until the present time, capture–recapture investigators have expressed a renewed interest in abundance and related parameters (Pradel, 1996; Schwarz & Arnason, 1996; Schwarz, 2001). The focus of this session was abundance, and presentations covered topics ranging from estimation of abundance and rate of change in abundance, to inferences about the demographic processes underlying changes in abundance, to occupancy as a surrogate of abundance. The plenary paper by Link & Barker (2004) is provocative and very interesting, and it contains a number of important messages and suggestions. Link & Barker (2004) emphasize that the increasing complexity of capture–recapture models has resulted in large numbers of parameters and that a challenge to ecologists is to extract ecological signals from this complexity. They offer hierarchical models as a natural approach to inference in which traditional parameters are viewed as realizations of stochastic processes. These processes are governed by hyperparameters, and the inferential approach focuses on these hyperparameters. Link & Barker (2004) also suggest that our attention should be focused on relationships between demographic processes such as survival and recruitment, the two quantities responsible for changes in abundance, rather than simply on the magnitudes of these quantities. They describe a type of Jolly–Seber capture–recapture model that permits inference about the underlying relationship between per capita recruitment rates and survival rates (Link & Barker, this volume). Implementation used Bayesian Markov Chain Monte Carlo methods and appeared to work well, yielding inferences about the relationship between recruitment and survival that were robust to selection of prior distribution. We believe that readers will find their arguments compelling, and we expect to see increased use of hierarchical modeling approaches in capture–recapture and related fields. Otto (presentation without paper) also recommended use of hierarchical models in analysis of multiple data sources dealing with population dynamics of North American mallards. He integrated survival inferences from ringing data, abundance information from aerial survey data, and recruitment information based on age ratios from a harvest survey. He used a Leslie matrix population projection model as an integrating framework and obtained estimates of breeding population size using all data.Otto’s approach also permitted inference about biases in estimated quantities. As with the work of Link & Barker (2004), we find Otto’s recommendation to use hierarchical models to integrate data from multiple sources to be very compelling. Alisauskas et al. (2004) report results of an analysis of capture–recapture data for a askatchewan population of white–winged scoters. They used the approach of Pradel (1996) to estimate population growth rate (See the PDF) directly. Estimates for 1975–1985 were quite low, but estimates for the recent period, 2000–2003,increased to values > 1. Parameter estimates for seniority, survival and per capita recruitment (Pradel, 1996) led to the inference that increased recruitment was largely responsible for the improvements in population status and growth. However, various data sources also indicated that this increase in recruitment was likely a result of increased immigration rather than improved reproduction on the area. This latter inference is important from a conservation perspective in indicating the importance of birds in other locations to growth and health of the study population. Lukacs and Burnham presented material to be published elsewhere that dealt with the use of genetic markers in capture–recapture studies. The data sources for such studies are samples of hair or feces, which are then analyzed using molecular genetic techniques in order to determine individual genotypes with respect to a usually small number of loci. Two types of classification error can arise in such analyses. First, if only a small number of loci is examined, then there may be nonnegligible probabilities that multiple individual animals will have the same genotypes. The second type of error arises during the polymerase chain reaction (PCR) process and can result from failure of alleles to amplify (allelic dropout) or from PCR inhibitors in hair and feces that produce the appearance of false alleles or misprinting (Creel et al., 2003). Lukacs and Burnham developed models that formally incorporate possible misclassification of samples resulting from these errors. These models permit estimation of parameters such as abundance and survival in a manner that properly incorporates this uncertainty of individual identity. We anticipate that noninvasive sampling based on molecular genetic analyses of hair or feces will become extremely important for some species, and that the models of Lukacs and Burnham will become very popular for such analyses. MacKenzie & Nichols (2004) discuss the use of occupancy (proportion of patches or habitat area that is occupied) as a surrogate for abundance. In cases of territorial species and where birds occur at low densities, the number of occupied patches may provide a reasonable estimate of abundance. In other cases, occupancy can be viewed as providing information about one tail of the abundance distribution, P (N = 0). The motivation for considering occupancy as a surrogate for abundance is that occupancy is based on so–called presence–absence surveys that are frequently less expensive of time and effort than methods that estimate abundance directly. We describe one set of models that can be used to estimate occupancy for a single season and another that can be used to estimate parameters such as local probabilities of extinction and colonization that are associated with occupancy dynamics. We outline a possible hybrid approach that combines occupancy data with data on marked individuals in order to betterexplore the mechanisms underlying occupancy dynamics. These five presentations made for an interesting session containing useful information and recommendations for future work. A number of themes connecting these presentations could be emphasized. For example, two of the presentations considered alternatives to standard capture–recapture sampling that can be used to draw inferences about abundance, or a portion of the abundance distribution, with field methods that should be less expensive than usual capture–recapture approaches of handling animals. We believe that the most important theme of the session was the emphasis on the processes responsible for changes in abundance. In particular, we are excited by the potential for using hierarchical models as a means of investigating relationships among vital rates and as a means of combining multiple sources of data relevant to system dynamics. Indeed, we expect the importance of this session theme to be reflected in the content and presentations of the next EURING meeting.

Animal Biodiversity and Conservation↗